Citrus Sinensis ID: 004410
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XSC3 | 912 | WD repeat-containing prot | yes | no | 0.478 | 0.395 | 0.324 | 3e-49 | |
| Q6LA54 | 933 | Uncharacterized WD repeat | yes | no | 0.364 | 0.294 | 0.357 | 4e-48 | |
| Q498F0 | 912 | WD repeat-containing prot | N/A | no | 0.475 | 0.393 | 0.331 | 3e-47 | |
| Q5JSH3 | 913 | WD repeat-containing prot | yes | no | 0.430 | 0.355 | 0.323 | 1e-46 | |
| Q9R037 | 908 | WD repeat-containing prot | yes | no | 0.430 | 0.357 | 0.323 | 2e-46 | |
| Q6NVE8 | 915 | WD repeat-containing prot | yes | no | 0.430 | 0.355 | 0.323 | 2e-46 | |
| O60136 | 586 | Uncharacterized WD repeat | no | no | 0.376 | 0.484 | 0.320 | 3e-41 | |
| Q03177 | 834 | WD repeat-containing prot | yes | no | 0.431 | 0.390 | 0.294 | 4e-35 | |
| P32330 | 852 | 2-deoxy-glucose resistant | no | no | 0.356 | 0.315 | 0.286 | 1e-22 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.370 | 0.183 | 0.314 | 6e-21 |
| >sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 218/394 (55%), Gaps = 33/394 (8%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G++ TMKFS G+ LAS G+D VR+W + + FD + + N ++
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 559
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
P +E ++ +KS + + P K ++P +++GH++++LDLSWSKN
Sbjct: 560 SP-SPSQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 618
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+DGK+R+W +
Sbjct: 619 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 678
Query: 461 CQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKK 516
+V + ++ ++++A +C +GK ++GT G C FYD + + + Q + +G+
Sbjct: 679 KKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRN 738
Query: 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576
K+ G++ITG + P + +K++VTS DS +R+ ++ K + + SQ+ A+F+ D
Sbjct: 739 KV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHD 796
Query: 577 GKHVVSPSEDSNIYIWN-YSNQDKSSSRSK---SIWSCESFLSHNVSVAIPWVGLETTAG 632
++VS SED +YIW+ Y + K +S + W E +HN V T+A
Sbjct: 797 FNYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFW--EGIKAHNAVV--------TSAI 846
Query: 633 ALPSPTFGEKMQRNSLK-QNNHQNLEGDLDQNMP 665
P+P+ + S K + N + + ++ + MP
Sbjct: 847 FAPNPSLMLSLDVQSEKSEGNEKGEDAEVLETMP 880
|
Downstream effector for RAB11. May be involved in vesicle recycling. Bos taurus (taxid: 9913) |
| >sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 172/322 (53%), Gaps = 47/322 (14%)
Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQLI 343
+I MKFS DG+YLA GG+D +R+W V+ EH R + +DP
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSVASETCSSDP-------------- 363
Query: 344 PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLL 403
+ K++ L VF E P+ E+ GH++++LDLSWS+N FLL
Sbjct: 364 ----NNPKLN---------------LKAPVFS--EAPIREYAGHTADILDLSWSRNNFLL 402
Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
SSS DKT RLW CL F H+++VTS+AF+P DD +F+SGS+D K+R+W ++ V
Sbjct: 403 SSSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAV 462
Query: 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523
+ ++ E+++AV + PDG I GT G C FYD + + Q I K G ++
Sbjct: 463 SFWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKV 522
Query: 524 TGFQFSP------SDPSKVIVTSADSLVRV--LCGENVVGKFKASAFRVAGSQMFATFTS 575
TG Q + ++++VT+ DS +R+ L +++ KFK A A SQ A F
Sbjct: 523 TGIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHA--NAQSQNRAYFDD 580
Query: 576 DGKHVVSPSEDSNIYIWNYSNQ 597
DG +V+ SED ++IW+ Q
Sbjct: 581 DGNYVICGSEDHQVFIWDLPPQ 602
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/398 (33%), Positives = 216/398 (54%), Gaps = 39/398 (9%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G++ TMKFS G+ LAS G+D VR+W + + FD + + N ++
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIWVL-----KNAFDYFNN----MRIKYNTEGRV 562
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCV--VLPP-KVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
P +E ++ +KS + V P K + P +++GH++++LDLSWSKN
Sbjct: 563 SP-SPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFRQVPFCKYKGHTADLLDLSWSKN 621
Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+DGK+R+W +
Sbjct: 622 YFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIP 681
Query: 460 RCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGK 515
+V + +I ++++A +C +GK ++GT G C FYD + + + Q + +G+
Sbjct: 682 DKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGR 741
Query: 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575
++ G++ITG + P + +K++VTS DS +R+ ++ K + SQ+ A+F+
Sbjct: 742 NRV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGCVNSSSQIKASFSH 799
Query: 576 DGKHVVSPSEDSNIYIWN-YSNQDKSSSRSK---SIWSCESFLSHNVSVAIPWVGLETTA 631
D ++VS SED +YIW+ Y + K +S + W E +HN V T+A
Sbjct: 800 DFTYIVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFW--EGIKAHNAVV--------TSA 849
Query: 632 GALPSPTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPS 669
P+P + +S KQ EGD + + + PS
Sbjct: 850 IFAPNPGLMVSAETSSEKQ------EGDQAEPVENIPS 881
|
Downstream effector for rab11. May be involved in vesicle recycling. Xenopus laevis (taxid: 8355) |
| >sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 52/377 (13%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
H G++ TMKFS G+ LAS G+D VR+W + D F+ +T+
Sbjct: 510 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 567
Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
D D ++ DK R ++P +++GH+++
Sbjct: 568 SLSSSKSDTDTGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 609
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
+LDLSWSKN FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+D
Sbjct: 610 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 669
Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
GK+R+W + +V + ++ ++++A +C +GK ++GT G C FYD + + + Q
Sbjct: 670 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 729
Query: 508 NQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG 566
+ +G+ K+ G++ITG + P + +K++VTS DS +R+ ++ K + +
Sbjct: 730 IHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSS 787
Query: 567 SQMFATFTSDGKHVVSPSEDSNIYIWN-YSNQDKSSSRSK---SIWSCESFLSHNVSVAI 622
SQ+ A+F+ D ++VS SED +YIW+ Y + K +S + W E +HN V
Sbjct: 788 SQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFW--EGIKAHNAVV-- 843
Query: 623 PWVGLETTAGALPSPTF 639
T+A P+P+
Sbjct: 844 ------TSAIFAPNPSL 854
|
Downstream effector for RAB11. May be involved in vesicle recycling. Homo sapiens (taxid: 9606) |
| >sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 52/377 (13%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
H G++ TMKFS G+ LAS G+D VR+W + D F+ +T+
Sbjct: 505 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 562
Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
D D ++ DK R ++P +++GH+++
Sbjct: 563 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 604
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
+LDLSWSKN FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+D
Sbjct: 605 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 664
Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
GK+R+W + +V + ++ ++++A +C +GK ++GT G C FYD + + + Q
Sbjct: 665 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 724
Query: 508 NQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG 566
+ +G+ K+ G++ITG + P + +K++VTS DS +R+ ++ K + +
Sbjct: 725 IHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSS 782
Query: 567 SQMFATFTSDGKHVVSPSEDSNIYIWN-YSNQDKSSSRSK---SIWSCESFLSHNVSVAI 622
SQ+ A+F+ D ++VS SED +YIW+ Y + K +S + W E +HN V
Sbjct: 783 SQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFW--EGIKAHNAVV-- 838
Query: 623 PWVGLETTAGALPSPTF 639
T+A P+P+
Sbjct: 839 ------TSAIFAPNPSL 849
|
Downstream effector for RAB11. May be involved in vesicle recycling. Rattus norvegicus (taxid: 10116) |
| >sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 52/377 (13%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ----DTDPSCLYFTINH 338
H G++ TMKFS G+ LAS G+D VR+W + D F+ +T+
Sbjct: 512 HMGAVWTMKFSHCGRLLASAGQDNIVRIWAL--KNAFDYFNNMRMKYNTEGRVSPSPSQE 569
Query: 339 LSQLIPIDVD--------KEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390
D D ++ DK R ++P +++GH+++
Sbjct: 570 SLSSSKSDTDMGVCSGTDEDPDDKNAPFR------------------QRPFCKYKGHTAD 611
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450
+LDLSWSKN FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+D
Sbjct: 612 LLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLD 671
Query: 451 GKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507
GK+R+W + +V + ++ ++++A +C +GK ++GT G C FYD + + + Q
Sbjct: 672 GKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQ 731
Query: 508 NQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG 566
+ +G+ K+ G++ITG + P + +K++VTS DS +R+ ++ K + +
Sbjct: 732 IHVRSTRGRNKV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSS 789
Query: 567 SQMFATFTSDGKHVVSPSEDSNIYIWN-YSNQDKSSSRSK---SIWSCESFLSHNVSVAI 622
SQ+ A+F+ D ++VS SED +YIW+ Y + K +S + W E +HN V
Sbjct: 790 SQIKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFW--EGIKAHNAVV-- 845
Query: 623 PWVGLETTAGALPSPTF 639
T+A P+P+
Sbjct: 846 ------TSAIFAPNPSL 856
|
Downstream effector for RAB11. May be involved in vesicle recycling. Mus musculus (taxid: 10090) |
| >sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 175/331 (52%), Gaps = 47/331 (14%)
Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC-LYFTINHLSQLIP 344
S+ + S G+YLA+ G+D +RVWKVIE +++ SC +FT
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFT--------- 238
Query: 345 IDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLS 404
P +F +P+ E GH++EVL +SWSKN FLL+
Sbjct: 239 -------------------------PSSIFE--PEPVLECVGHNAEVLSISWSKNDFLLT 271
Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464
SSAD+TVRLW + L VF HN VT VAF+P+DD YF+SGS+D K+++W + R +++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331
Query: 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524
+T++ +VS +C+ PDG+ +VG G C Y+ K+ Q Y + + + R+T
Sbjct: 332 HWTELEYVVSTICFYPDGESIVVGMFYGLCAIYETKNLQ-YVSSWLIHHSPSRNKKCRVT 390
Query: 525 GFQFS---PSDPSK---VIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDG 577
G Q + P+D V+V++ D+ +R+ K S A RV G ++ + + D
Sbjct: 391 GLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNG-RVLSRLSEDN 449
Query: 578 KHVVSPSEDSNIYIWNYSNQDK-SSSRSKSI 607
+++S S+ + + +W+ N+ ++SR +S+
Sbjct: 450 SYIISGSDTNEVVLWHIPNKVLINASRKRSV 480
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 176/380 (46%), Gaps = 54/380 (14%)
Query: 265 KKQSRELSSLYTGQEFLAHEGSILT---------------MKFSLDGQYLASGGEDGTVR 309
+K ++ L+ QE +A+EG +T KFS DG+++A+G +DG +R
Sbjct: 139 RKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIR 198
Query: 310 VWKVI----EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK------IDKTKSLR 359
+WKVI E LD + + I Q+ ++ KEK +K +
Sbjct: 199 IWKVIGSPVERAELDSSAESNKEARAKSMRIKQ--QVSSLNNPKEKQFLDSATEKYEEKE 256
Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
K +L V P RL ++ H +VLD++WSKN F+LS+S DKTV+LW
Sbjct: 257 KLLNLYAPVFHPTPLRL-------YKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRK 309
Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
L+ F H ++VT V F+P DD +FISG +D K R+W + +V D ++++++V
Sbjct: 310 NSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLS 369
Query: 480 P-DGKGGIVGTMTGNCRF-----------YDIKDNQLYQQN---QICLQGKKKLPGKRIT 524
P +GK I+GT G + + D Q +QN + K G R+T
Sbjct: 370 PEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKIRHGPRVT 429
Query: 525 GFQFSPS---DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT--SDGKH 579
G Q S + +++VTS DS +R+ E F SQ A +
Sbjct: 430 GLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLSIWHGQPI 489
Query: 580 VVSPSEDSNIYIWNYSNQDK 599
VV+ S+D +Y W + D+
Sbjct: 490 VVNSSDDHWVYGWRLKSSDR 509
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 42/311 (13%)
Query: 272 SSLYTGQEFLAH----EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327
S+ Y G+ +A+ + SI FS DG+Y+ G +DG++ +WKVI + + ++ +
Sbjct: 157 STTYQGEPAVANSELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVI-NSPVKRSEMGRS 215
Query: 328 DPSCLYFTINHLS---QLIPIDVDKEKI--------DKTKSLRKSSDLTCVVLPPKVFRL 376
+ S N L L I I D+ + K L V VFR+
Sbjct: 216 EKSVSASRANSLKIQRHLASISSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRV 275
Query: 377 LEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAF 436
F H+ ++LD +WSKNGFL+++S DKT +LW L+ F H ++VTS F
Sbjct: 276 -------FMEHALDILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIF 328
Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC-PDGKGGIVGTMTGNCR 495
P DD + I+G +D + R+W + +V D +++++++ P G+ I+GT G
Sbjct: 329 FPNDDRFIITGCLDHRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIY 388
Query: 496 F---YDIKDNQLYQQNQICLQGKKK------------LPGKRITGFQ--FSPSDPS-KVI 537
+ +K + + QG K G RITG Q FS D + ++I
Sbjct: 389 VLLTHGLKFVSSFHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLI 448
Query: 538 VTSADSLVRVL 548
VT+ DS +++
Sbjct: 449 VTTNDSKIQIF 459
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 149/334 (44%), Gaps = 54/334 (16%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
LYT Q H + + FS DG LASG D TVR+W + + CLY
Sbjct: 1151 LYTLQ---GHTNWVNAVAFSPDGATLASGSGDQTVRLWDI-------------SSSKCLY 1194
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE----KPLHEFQGHSS 389
H S + + + D + SSD T RL E K L FQGH+S
Sbjct: 1195 ILQGHTSWVNSVVFNP---DGSTLASGSSDQTV--------RLWEINSSKCLCTFQGHTS 1243
Query: 390 EVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG 447
V + ++ +G +L+S S+DKTVRLW + +CL F H N+V SVAFNP D + SG
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASG 1302
Query: 448 SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ-LY 505
S D VR+WE+ + + + VS+V + PDG G+ R + I + LY
Sbjct: 1303 SGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLY 1362
Query: 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565
G G I FSP D + + S D VR+ + GK + +
Sbjct: 1363 -----TFLGHTNWVGSVI----FSP-DGAILASGSGDQTVRLWSISS--GK---CLYTLQ 1407
Query: 566 GSQMFA---TFTSDGKHVVSPSEDSNIYIWNYSN 596
G + F+ DG + S S+D + +WN S+
Sbjct: 1408 GHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISS 1441
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| 255555687 | 743 | WD-repeat protein, putative [Ricinus com | 0.977 | 0.993 | 0.598 | 0.0 | |
| 359473960 | 729 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.989 | 0.567 | 0.0 | |
| 224053745 | 509 | predicted protein [Populus trichocarpa] | 0.674 | 1.0 | 0.679 | 0.0 | |
| 449452206 | 743 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.993 | 0.541 | 0.0 | |
| 225470952 | 753 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.968 | 0.524 | 0.0 | |
| 297742407 | 665 | unnamed protein product [Vitis vinifera] | 0.870 | 0.987 | 0.538 | 0.0 | |
| 356527704 | 745 | PREDICTED: WD repeat-containing protein | 0.940 | 0.953 | 0.529 | 0.0 | |
| 224075176 | 500 | predicted protein [Populus trichocarpa] | 0.662 | 1.0 | 0.665 | 0.0 | |
| 356513249 | 720 | PREDICTED: WD repeat-containing protein | 0.939 | 0.984 | 0.525 | 0.0 | |
| 225455320 | 731 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.976 | 0.517 | 0.0 |
| >gi|255555687|ref|XP_002518879.1| WD-repeat protein, putative [Ricinus communis] gi|223541866|gb|EEF43412.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/757 (59%), Positives = 558/757 (73%), Gaps = 19/757 (2%)
Query: 3 GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVN 62
G +EEEEE+FFD+ EE S +SD S+ E CSSS++ S+L SQ E+W P+SV
Sbjct: 2 GNYSEEEEERFFDSREETSSMSDSGSNVYEDCSSSID-FDYSLLSESQYEVWIKSPESVY 60
Query: 63 ERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQ 122
+RR +FLK M DQ+ ++ D +ES +TQL +DR+ + +GAVLRTSG GD + ++
Sbjct: 61 DRRDRFLKWMN--SDQNTISEGDSINESFTKTQLGIDRLMDTTGAVLRTSGLGDGLLSTE 118
Query: 123 SSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQS 182
+ +SS+ E E LE ++ D+ C I + G + VV + DQD + SRL++ GS+QS
Sbjct: 119 TPVSSQSSETQESLEDGSVDDNFVCTIRNLDDGTEFVVDELDQDGML--SRLRKVGSNQS 176
Query: 183 VSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA---MARIIDRHG 239
+SF+EF T G SS VQ S+ E+RDL++ K+K K WL++LG AR++DRHG
Sbjct: 177 LSFEEFQRTIGVSS-LVQRFSSKYGGEARDLIEEKKKTKGSWLRRLGKSNHAARVVDRHG 235
Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
+ K D E M+RV+VHP KK+S+ELSSLY+GQEFLAH+GSILTMKFS DGQYL
Sbjct: 236 ATAFKNNDRE------MQRVKVHPSKKRSKELSSLYSGQEFLAHDGSILTMKFSPDGQYL 289
Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
ASGGED VRVWKVIE +RLD F +Q D SC+YFT+NHLS++ ++VDK K +KTK
Sbjct: 290 ASGGEDSVVRVWKVIEDDRLDQFHIQANDTSCVYFTMNHLSEIASLNVDKMKSEKTKK-H 348
Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
SSD TCV+ PPKVFR+LEKPLHEF GHS EVLDLSWSK FLLSSS DKTVRLWQVG D
Sbjct: 349 ISSDSTCVIFPPKVFRVLEKPLHEFHGHSGEVLDLSWSKKRFLLSSSVDKTVRLWQVGCD 408
Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
RCLRVFSHNNYVT V FNP+DDNYFISGSIDGKVRIWEV RC VVDYT IREIV+AVCY
Sbjct: 409 RCLRVFSHNNYVTCVDFNPMDDNYFISGSIDGKVRIWEVIRCLVVDYTVIREIVTAVCYR 468
Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539
P GKGGIVGTMTGNC FYDI DN+L +QI LQGKKKL G+RITGF+FSPSDPSKV+VT
Sbjct: 469 PGGKGGIVGTMTGNCLFYDIIDNKLQLDSQISLQGKKKLTGRRITGFEFSPSDPSKVVVT 528
Query: 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599
SADSLVRVLCG +V+ KF+AS+ VA +QM A+FTSDGKHV+S SEDSNIY+WNY++++K
Sbjct: 529 SADSLVRVLCGMDVICKFRASSIGVAANQMSASFTSDGKHVLSTSEDSNIYVWNYNSEEK 588
Query: 600 SSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNS-LKQNNHQNLEG 658
SSSR K I S +SF S N S+AIPW G+E G L P + NS L ++H G
Sbjct: 589 SSSRVKKIQSYQSFASQNASIAIPWCGIENVPGPLVPPKADGDLSGNSGLHGHSHHKFFG 648
Query: 659 DLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKLLKS 718
+ D + S DCFS R L+ +T+ +ATWPEEKLP++SP V+LSP + + LKS
Sbjct: 649 ETDHKVLPSSPDCFSLTRGLLLDSLTRGSATWPEEKLPDSSP--VALSPTKCKEYRFLKS 706
Query: 719 ACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
AC SI S+PHLWGLV+VTA WDGRIRTYLNYGLP+RI
Sbjct: 707 ACNSIFSSPHLWGLVIVTAGWDGRIRTYLNYGLPLRI 743
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473960|ref|XP_002263491.2| PREDICTED: uncharacterized protein LOC100249640 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/760 (56%), Positives = 532/760 (70%), Gaps = 39/760 (5%)
Query: 3 GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
G S+EEE ++FFDT EE S D SD S SS V+ +DS Y +W PQ
Sbjct: 2 GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54
Query: 60 SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
SVNERR KFLK M +DQ+ + +E+ E D + +++ DR TENSGAVLR S
Sbjct: 55 SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114
Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
D + Q S+S + E+LE KD+ C+I + G + VV + + + R
Sbjct: 115 DRVSSIQCSMSFR-SNGEELLEGGIRKDNLPCKIKNLDDGTEFVVDKLGGNGMHGKPR-- 171
Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
E GS++ VS +EF T G S VQ R+ EE + VD K+KVKRGWL++LGA+A +
Sbjct: 172 EVGSNRVVSMEEFQRTIGLSP-LVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 230
Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
DR G A G T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 231 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 286
Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
G YLASGGEDG VRVWK+IE D+QD DPS +YFT N S+L P+DVDKEK K
Sbjct: 287 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 345
Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 346 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 405
Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 406 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 465
Query: 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535
VCY PDGKGGIVG+M GNC FYDI DN L QI LQGKKKLPGKRITGFQFSPSDP+K
Sbjct: 466 VCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQFSPSDPTK 525
Query: 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595
V+V SADSLVR+LCG +V+ KF+ R GS +FT+DGKH+VS SEDSN+++W+Y+
Sbjct: 526 VMVASADSLVRILCGADVICKFRGGCVRNVGSHTSTSFTADGKHIVSASEDSNVHLWDYN 585
Query: 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQN 655
NQD++SSR+K IWSCESFLSHN ++AIPW G++TT PSPT + +N
Sbjct: 586 NQDRASSRAKDIWSCESFLSHNATIAIPWCGMKTTTETCPSPTLTTSLP-------GFEN 638
Query: 656 LEGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKL 715
Q M SP DCFS AR+F LE + + +ATWPEEKLP++SP + S+ +S+ K
Sbjct: 639 -----GQEMASSP-DCFSAAREFLLESLPRGSATWPEEKLPDSSPFSPSMR---RSEYKF 689
Query: 716 LKSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
LKSACQ+ S+PH WGLV+VTA WDG IRTY NYGLP R+
Sbjct: 690 LKSACQNTASSPHTWGLVIVTAGWDGWIRTYHNYGLPHRL 729
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053745|ref|XP_002297958.1| predicted protein [Populus trichocarpa] gi|222845216|gb|EEE82763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/543 (67%), Positives = 431/543 (79%), Gaps = 34/543 (6%)
Query: 213 LVDAKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS 272
+V+AKRK KR WLKKLG RIIDR G+A KP D E T G +M RV+VHP KK ++ELS
Sbjct: 1 MVEAKRKAKRSWLKKLGLKGRIIDRQGTAASKPCDLESTTGAKMHRVKVHPSKKHTKELS 60
Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
SL+TGQEFLAH+GSILTMKFSLDGQYLASGGEDG VRVWKVIE +R + FD+ TDPSCL
Sbjct: 61 SLFTGQEFLAHKGSILTMKFSLDGQYLASGGEDGVVRVWKVIEDDRSNQFDISATDPSCL 120
Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392
YFT+NHLS+L +DVDK+ IDKTK L SSD TCVV+PPKVFR+LEKPLHEFQGH+ EVL
Sbjct: 121 YFTMNHLSELASLDVDKKVIDKTKRL-GSSDSTCVVVPPKVFRVLEKPLHEFQGHNCEVL 179
Query: 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
DLSWSK FLLSSS DKTVRLWQVG DRCLRVFSHNNYVTSV FNPVDDNYFISGSIDGK
Sbjct: 180 DLSWSKKRFLLSSSIDKTVRLWQVGCDRCLRVFSHNNYVTSVDFNPVDDNYFISGSIDGK 239
Query: 453 VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512
VRIWEV C+VVDYTDIREIV+A CYCP GKGG+VGTMTGNC FYDI DN+L QICL
Sbjct: 240 VRIWEVLGCRVVDYTDIREIVTAACYCPGGKGGLVGTMTGNCLFYDIIDNRLQLDAQICL 299
Query: 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572
QGKKKLPG+RITGF+FSPSDPSK++VTSADSLVRV+ G +V+ KF+ R A +Q+ A+
Sbjct: 300 QGKKKLPGRRITGFEFSPSDPSKLVVTSADSLVRVISGLDVICKFRG-CLRFAANQISAS 358
Query: 573 FTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAG 632
FTSDGKH++S SEDSN+YIWNY++Q++ +SR+K+I SCESF+S N SVAIPW G+ET
Sbjct: 359 FTSDGKHIISTSEDSNVYIWNYTSQER-TSRTKNIQSCESFMSQNASVAIPWRGIETIE- 416
Query: 633 ALPSPTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPE 692
+ + SPS CFS AR F LE +T+ +ATWPE
Sbjct: 417 ----------------------------QKRLSSSPSVCFSLARGFLLESLTRGSATWPE 448
Query: 693 EKLPNASPKAVSLSPLCKSKLKLLKSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLP 752
EKLPN+SPKA S P + + K LK+ACQ++LS+ H+WGLV+VTA WDGRIRTYLNYGLP
Sbjct: 449 EKLPNSSPKAAS-PPKSRPEFKYLKNACQNMLSS-HMWGLVIVTAGWDGRIRTYLNYGLP 506
Query: 753 IRI 755
+R+
Sbjct: 507 LRL 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452206|ref|XP_004143851.1| PREDICTED: uncharacterized protein LOC101204856 [Cucumis sativus] gi|449501765|ref|XP_004161452.1| PREDICTED: uncharacterized LOC101204856 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/759 (54%), Positives = 530/759 (69%), Gaps = 21/759 (2%)
Query: 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLAD--SVLCYSQSEIWTGYP 58
M V EEE E+F+DT EEIS VSD SDCSE CS+S D L Y W
Sbjct: 2 MDLVYCEEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPENLRYVG---WIRNL 58
Query: 59 QSVNERRSKFLKLMGFILDQSLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDI 118
+SV ERR+KF K MG LDQ+ N ++ E +S ++ DRI E+ G VLR SG ++
Sbjct: 59 ESVYERRNKFFKWMGLDLDQNFDNTDEEEGDS---WKVYRDRIIEDCGTVLRLSGSEGEL 115
Query: 119 HFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESG 178
S +ISS EAPE + ++++ AC I + G + +V QD + + L+E G
Sbjct: 116 S-SSLTISSMSNEAPESSGNVAVEENHACTIRNLDNGTEFIVDSFRQDGML--NMLREVG 172
Query: 179 SSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH 238
S++S SFDEF G S VQ L + E++ +V+A+++ K+GWL+KLGA+A I+D +
Sbjct: 173 SNRSFSFDEFERNIGQSP-LVQQLFRKNVEKAGVIVNARKQAKKGWLRKLGAVACIVD-N 230
Query: 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
G +K G + +++VRVHP KKQS+ELSSL+ GQEF AH+GSI TMKFS+DG+Y
Sbjct: 231 GEGAMKTGVSNSSSKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSVDGRY 290
Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
LA+ GEDG VRVW+V+E R D FD+ + DPS LYF++NHLS+L P+DV KE + KTK L
Sbjct: 291 LATAGEDGVVRVWQVLEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETLGKTK-L 349
Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
++SS CV+ PPK+FR+LEKPLHEF GHS EVLDLSWSK G LLSSS DKTVRLWQ+G
Sbjct: 350 KRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGC 409
Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
D CLRV+ HNNYVT V+FNP+D+N+FISGSIDGKVRIWEV CQV+DY DIREIVSAVCY
Sbjct: 410 DTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVIDYIDIREIVSAVCY 469
Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538
PDGKGGIVG+MTGNCRFY+I DN+L QICL GKKK PGKRI GF+FSPSDPSK++V
Sbjct: 470 RPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMV 529
Query: 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598
SADS V ++ +V+ KFK R G++M A+FTSDGKH+VS SE+ N+Y+WNY+ +D
Sbjct: 530 CSADSPVHIISRSDVICKFK--GLRNGGNKMSASFTSDGKHIVSASEE-NVYVWNYNCKD 586
Query: 599 KSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPT-FGEKMQRNSLKQNNHQNLE 657
K +SR K IWS ESF S + ++AIPW G++ T SPT + + + + +
Sbjct: 587 K-ASRKKKIWSSESFFSRSTTIAIPWSGVKITPEPPLSPTRVCDTPGSIPEMEPKYSDDD 645
Query: 658 GDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPN-ASPKAVSLSPLCKSKLKLL 716
GD + +P S DCFS +R F E + K ATWPEEKL + +S +CK++ K L
Sbjct: 646 GDREHKVPSSSPDCFSLSRTLFPELL-KGTATWPEEKLHDSSSMTPSPSPSMCKTEFKFL 704
Query: 717 KSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
K+ACQS+LS+PH+WGLV+VTA WDGRIRT+LNYGLPIR+
Sbjct: 705 KNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 743
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/764 (52%), Positives = 509/764 (66%), Gaps = 35/764 (4%)
Query: 8 EEEEQFFDTCEEISYVSDRDSDCSEGCSS---SVEHLADSVLCYSQSEIWTGYPQSVNER 64
EEE+QFFDT E+I+ VSD SDC E S + + ++ S C E+W P+S+ ER
Sbjct: 7 EEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGC----EVWIKNPESIRER 62
Query: 65 RSKFLKLMGFILDQSLMNAEDLEDESRVRTQL--DVDRITENSGAVLRTSGFGDDIHFSQ 122
R+KFLK MG +D + E V +L ++DRITENSGAVL S
Sbjct: 63 RTKFLKWMGLGVDHVVREVP----EELVSGELKGEIDRITENSGAVLGMS----SSDDGF 114
Query: 123 SSISSKLCEAPEVLEHF--TLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
SS S +C + + +L+++ CRI G + +V + Q + SRL+E GS+
Sbjct: 115 SSSQSSMCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQ--YGMLSRLREVGSN 172
Query: 181 QSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIID-RHG 239
+ V+ +EF T G S VQ + ++ E++ + V+A ++ +RGW ++LGA+A I +
Sbjct: 173 RVVTIEEFERTLGLSP-LVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIE 231
Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
KP LG + + V+V P +++S+ELS+LY GQ+F+AHEGSILTMKFS DGQYL
Sbjct: 232 VGKFKPNGPYPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYL 291
Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
S GED VRVW V E ER DGFD D D S YFT+NHLS+L+PI DKEK K K+LR
Sbjct: 292 GSAGEDRVVRVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLR 351
Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
KS D CV+ P KVF++LEKPLHEF GH EVLD+SWSKN +LLSSS DKTVRLWQVG +
Sbjct: 352 KSLDAACVIFPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCN 411
Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
+CL+VFSHNNYVT V FNPVDDNYFISGSIDGKVRIWE+ QVVD+TDI EIV+AVCY
Sbjct: 412 QCLKVFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYR 471
Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539
PDGKG IVG+MTGNCRFYD D++L ICLQGKKK KRITGFQFSPSDPSK++VT
Sbjct: 472 PDGKGVIVGSMTGNCRFYDASDDRLQLHALICLQGKKKSSFKRITGFQFSPSDPSKLMVT 531
Query: 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD- 598
SADS VR+L G +V+ K++ R AGSQ+ A+FTSDG H+VS SEDSN+Y+WN +QD
Sbjct: 532 SADSQVRILDGVDVICKYR--GLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQDV 589
Query: 599 KSSSRSKSIWSCESFLSHNVSVAIPWVG-------LETTAGALPSPTFGEKMQRNSLKQN 651
S++K+ WSCE F S+N SVAIPW G +GA PSP + R+ +
Sbjct: 590 PVHSQAKNNWSCERFFSNNASVAIPWCGATCGNSIFSNISGAFPSPKLSVNLPRSDPENK 649
Query: 652 NHQNLEGDLDQN-MPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCK 710
HQ G+ +P S D FS FF E + K +ATWPEEKL S VS S +CK
Sbjct: 650 PHQCHLGESSSTILPFSSPDHFSVGHGFFSESLPKGSATWPEEKLLTPSSLVVS-SAMCK 708
Query: 711 SKLKLLKSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIR 754
S+ K LK++CQS+ +PH WGLV+VTA WDGRIR++ NYGLPIR
Sbjct: 709 SQYKFLKTSCQSMFGSPHAWGLVIVTAGWDGRIRSFQNYGLPIR 752
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742407|emb|CBI34556.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/760 (53%), Positives = 501/760 (65%), Gaps = 103/760 (13%)
Query: 3 GVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSS---VEHLADSVLCYSQSEIWTGYPQ 59
G S+EEE ++FFDT EE S D SD S SS V+ +DS Y +W PQ
Sbjct: 2 GSSSEEEGDRFFDTREEFS---DSASDGSVDFRSSNGVVDGDSDS-FGYG---LWIKNPQ 54
Query: 60 SVNERRSKFLKLMGFILDQSLMNAEDLE----DESRVRTQLDVDRITENSGAVLRTSGFG 115
SVNERR KFLK M +DQ+ + +E+ E D + +++ DR TENSGAVLR S
Sbjct: 55 SVNERRDKFLKWMNLDMDQNRITSEESESESGDVCCDKIKIETDRATENSGAVLRNSVSE 114
Query: 116 DDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQ 175
D + Q S+S + G +L L+
Sbjct: 115 DRVSSIQCSMSFR------------------------SNGEEL---------------LE 135
Query: 176 ESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARII 235
GS++ VS +EF T G S VQ R+ EE + VD K+KVKRGWL++LGA+A +
Sbjct: 136 GVGSNRVVSMEEFQRTIG-LSPLVQQHLQREVEEVSNSVDMKKKVKRGWLRRLGAVACVR 194
Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
DR G A G T+G + RRVRVHP +K+S+ELSSLY G+EF AH G ILTMKFSLD
Sbjct: 195 DRQGEA----GSTHATVGAKTRRVRVHPYRKRSKELSSLYKGREFAAHRGPILTMKFSLD 250
Query: 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355
G YLASGGEDG VRVWK+IE D+QD DPS +YFT N S+L P+DVDKEK K
Sbjct: 251 GHYLASGGEDGIVRVWKIIEDGSSKEVDIQDIDPSSVYFTRND-SELTPLDVDKEKRGKK 309
Query: 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQ 415
K L++SSD TCV++PPKVFR+LE+PLHEFQGHS ++LDLSWSK G+LLSSS DKTVRLWQ
Sbjct: 310 KRLKRSSDSTCVIIPPKVFRILEEPLHEFQGHSGDILDLSWSKKGYLLSSSTDKTVRLWQ 369
Query: 416 VGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475
VG ++CLRVF HN+YVT V FNPVDDNYFISGSIDGKVRIWEV R +VVD+TDIR+IV+A
Sbjct: 370 VGQEQCLRVFYHNDYVTCVDFNPVDDNYFISGSIDGKVRIWEVHRHKVVDWTDIRDIVTA 429
Query: 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535
VCY PDGKGGIVG+M GNC FYDI DN L QI LQGKKKLPGKRITGFQFSPSDP+K
Sbjct: 430 VCYRPDGKGGIVGSMVGNCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQFSPSDPTK 489
Query: 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595
V+V SADSLVR+LCG +V+ KF+ R GS +FT+DGKH+VS SEDSN+++W+Y+
Sbjct: 490 VMVASADSLVRILCGADVICKFR--GVRNVGSHTSTSFTADGKHIVSASEDSNVHLWDYN 547
Query: 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQN 655
NQD++SSR+K IWSCESFLSHN ++AIPW G++TT PSPT K
Sbjct: 548 NQDRASSRAKDIWSCESFLSHNATIAIPWCGMKTTTETCPSPTLTTKS------------ 595
Query: 656 LEGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKL 715
+ + +ATWPEEKLP++SP + S+ +S+ K
Sbjct: 596 ---------------------------LPRGSATWPEEKLPDSSPFSPSMR---RSEYKF 625
Query: 716 LKSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
LKSACQ+ S+PH WGLV+VTA WDG IRTY NYGLP R+
Sbjct: 626 LKSACQNTASSPHTWGLVIVTAGWDGWIRTYHNYGLPHRL 665
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527704|ref|XP_003532448.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/755 (52%), Positives = 510/755 (67%), Gaps = 45/755 (5%)
Query: 7 EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
EEEE+QF++T EE+ VSD SDCSE SS + ++ ++W +SV++RR
Sbjct: 28 EEEEDQFYETREELCSVSDGGSDCSESDESSSGNNGH----VTRYQVWAQNLESVHQRRL 83
Query: 67 KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSS- 124
FL+ MG D + M E+L D+ +DRIT SGAVLRTS F + +S
Sbjct: 84 NFLRWMGLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTS-FAIEEGLPSTSN 137
Query: 125 ---ISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSSQ 181
+ S EA E+ +++ AC I + G + +V QD S L+ GS+Q
Sbjct: 138 QIVLDSLSDEASGSQEN---RENLACMIRNLDDGTEYIVDKLGQDGAP--STLRVLGSNQ 192
Query: 182 SVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHGSA 241
+S +EF G SS F++ R E +R L KRK+KRGWL+KL ++A + HG
Sbjct: 193 LISLEEFQKNIGPSS-FIRRHLQRDTENTRLLGVGKRKMKRGWLRKLDSIACFVHNHGFD 251
Query: 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLAS 301
K D + ++RVRVH +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YLAS
Sbjct: 252 ETKCKDCDSVDRSGIQRVRVHSYRKRFKELSSLYTEQEFKAHKGVILTMKFSLDGKYLAS 311
Query: 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361
GGEDG VRVWKVIE ER D+ D DPS +YF IN+ S + P+DVDKEK+ KT+ LR+S
Sbjct: 312 GGEDGMVRVWKVIEDERSSELDILDNDPSNIYFKINNFSCVAPLDVDKEKLVKTEKLRRS 371
Query: 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC 421
S+ TCV++PPK FR+ KPLHEFQGHSS+++DL+WSK GFLLSSS DKTVRLW VGIDRC
Sbjct: 372 SEATCVIVPPKTFRISAKPLHEFQGHSSDIIDLAWSKRGFLLSSSVDKTVRLWHVGIDRC 431
Query: 422 LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
LRVF HNNYVT V FNPV+DN+FISGSIDGKVRIWEV C+V DY DIREIV+AVC+ PD
Sbjct: 432 LRVFYHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFRPD 491
Query: 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541
GKG IVGTM GNCRFYDI DN L Q+CL+GKKK GK+ITGFQFSPSDPSK++V SA
Sbjct: 492 GKGTIVGTMAGNCRFYDIVDNHLQLDAQLCLRGKKKTSGKKITGFQFSPSDPSKLLVASA 551
Query: 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSS 601
DS V +L G +V+ KFK R AG QM A+FT+DGKH++S SEDSN+ IWNY+ QD+++
Sbjct: 552 DSHVCILSGVDVIYKFKG---RSAG-QMHASFTTDGKHIISVSEDSNVCIWNYTGQDRNT 607
Query: 602 SRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLEGDLD 661
S++K IWS ESFLSHN ++A+PW G+E+ G L SP+ GE D++
Sbjct: 608 SKAKKIWSSESFLSHNAAIAVPWCGIESMPGTLLSPSLGE-----------------DVN 650
Query: 662 QNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVS-LSP-LCKSKLKLLKSA 719
Q DCF +R F E + K +ATWPEE L ++S + + +SP +CKS+ K L+SA
Sbjct: 651 QRCSLPSPDCFFLSRGFLSELIPKVSATWPEETLVDSSCQTQTVVSPTMCKSEYKFLRSA 710
Query: 720 CQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIR 754
C+ +SN HLWG V+VTA WDG IR Y NYGLP+R
Sbjct: 711 CKG-MSNSHLWGQVIVTAGWDGYIRVYQNYGLPVR 744
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075176|ref|XP_002304571.1| predicted protein [Populus trichocarpa] gi|222842003|gb|EEE79550.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/538 (66%), Positives = 414/538 (76%), Gaps = 38/538 (7%)
Query: 218 RKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG 277
RK KR WLKKLG + RI+DR G+A K D E T RM+RV+VHP KK +++SSL+TG
Sbjct: 1 RKDKRSWLKKLGLVRRIVDRQGTAASKTRDLESTAEARMQRVKVHPSKKNIKDMSSLFTG 60
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
QEFLAH+GSILT+KFSLDGQYLASGGEDG VRVWKVIE +R + FD+ TDPS LYFT+N
Sbjct: 61 QEFLAHKGSILTIKFSLDGQYLASGGEDGVVRVWKVIEDDRSNHFDIPATDPSRLYFTMN 120
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H S L +DVD +KI K K SSD TCVV+PPKVFR+LEKPLHEFQGHS EVLDLSWS
Sbjct: 121 HHSDLASLDVDMKKIYKMKR-HGSSDSTCVVVPPKVFRVLEKPLHEFQGHSGEVLDLSWS 179
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
K FL+SSS D+TVRLWQVG DRCLRVFSHNNYVTSV FNPVDDNYFISGSIDGKVRIWE
Sbjct: 180 KKRFLVSSSVDQTVRLWQVGCDRCLRVFSHNNYVTSVDFNPVDDNYFISGSIDGKVRIWE 239
Query: 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
V CQVVDYTDIREIV+AVCY P GKGG+VGTMTGNC FYDI DNQL QICLQGKKK
Sbjct: 240 VLGCQVVDYTDIREIVTAVCYHPGGKGGLVGTMTGNCLFYDIIDNQLQLDAQICLQGKKK 299
Query: 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577
LPGKRITGF+FSPSDPSKV+VTSADSLVRVLCG +V+ KF+AS R +Q A+FTSDG
Sbjct: 300 LPGKRITGFEFSPSDPSKVVVTSADSLVRVLCGLDVICKFRASGLRSVANQTSASFTSDG 359
Query: 578 KHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSP 637
KH++S SED N+++WNY++Q++ +SR+K+I SCESFLS N SVAIPW
Sbjct: 360 KHIISTSEDFNVHVWNYASQER-TSRAKNIQSCESFLSQNASVAIPW------------- 405
Query: 638 TFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPN 697
LDQ S SDCFS AR F LE +T+ +ATWPEEKLPN
Sbjct: 406 ---------------------QLDQKKLSSSSDCFSLARGFLLESLTRGSATWPEEKLPN 444
Query: 698 ASPKAVSLSPLCKSKLKLLKSACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
+SPK S + + + K LK+AC ++LS+ HLWGLV+VTA WDGRIRTYLNYGLP+R+
Sbjct: 445 SSPKTASPTK-SRPEFKYLKNACHNMLSS-HLWGLVIVTAGWDGRIRTYLNYGLPLRL 500
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513249|ref|XP_003525326.1| PREDICTED: WD repeat-containing protein YMR102C-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/757 (52%), Positives = 505/757 (66%), Gaps = 48/757 (6%)
Query: 7 EEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRS 66
EEEE+QF++T EE+ VSD SDCSE SS + ++ ++W +SV++RR
Sbjct: 2 EEEEDQFYETREELCSVSDVGSDCSESDESSSGNNGH----VTRYQVWAKKLESVHQRRL 57
Query: 67 KFLKLMGFILDQSL-MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQS-- 123
FL+ M D + M E+L D+ +DRIT SGAVLRTS ++ S S
Sbjct: 58 NFLRWMDLESDLNYSMKGEELGDQP-----CGIDRITATSGAVLRTSFAVEEGLPSTSNQ 112
Query: 124 ----SISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGS 179
S+S + + E E+ AC I + G +V QD S L+ GS
Sbjct: 113 IVLDSLSDEASGSQENCENL------ACMIRNLDDGTQYIVDKLGQDGAP--STLRVLGS 164
Query: 180 SQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
+Q +S +EF G SS FV+ R E +R L KRK+KRGWL+KL ++A + HG
Sbjct: 165 NQLISLEEFQRNIGPSS-FVRRHLQRDTENTRLLRVGKRKMKRGWLRKLDSIACFVHNHG 223
Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
K D + ++RVRVH +K+ +ELSSLYT QEF AH+G ILTMKFSLDG+YL
Sbjct: 224 LDETKYKDCDSVDRSGVQRVRVHSYRKRVKELSSLYTEQEFKAHKGVILTMKFSLDGKYL 283
Query: 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359
ASGGEDG VRVWKV+E ER D+ D D S +YF IN+ S + P+DVDKEK+ KT+ LR
Sbjct: 284 ASGGEDGMVRVWKVVEDERSSELDILDDDASNIYFKINNFSCVAPLDVDKEKLVKTEKLR 343
Query: 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
+SS+ TCV++PPK FR+ KPLHEFQGHS ++LDL+WSK GFLLSSS DKTVRLW VGID
Sbjct: 344 RSSEATCVIVPPKTFRISSKPLHEFQGHSGDILDLAWSKRGFLLSSSVDKTVRLWHVGID 403
Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
RCLRVFSHNNYVT V FNPV+DN+FISGSIDGKVRIWEV C+V DY DIREIV+AVC+
Sbjct: 404 RCLRVFSHNNYVTCVNFNPVNDNFFISGSIDGKVRIWEVVHCRVSDYIDIREIVTAVCFR 463
Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539
PDGKG IVGTM NCRFYDI DN L Q+CL+GKKK GK+ITGFQFSPSDPSK++V
Sbjct: 464 PDGKGTIVGTMASNCRFYDIVDNHLQLDVQLCLRGKKKTSGKKITGFQFSPSDPSKLLVA 523
Query: 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599
SADS V +L G +V+ KFK R AG QM A+FT+DGKH++S SEDS++ IWNY+ QD+
Sbjct: 524 SADSHVCILSGVDVIYKFK--GLRSAG-QMHASFTTDGKHIISVSEDSHVCIWNYTGQDR 580
Query: 600 SSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLEGD 659
S+S++K IWS ESFLSHN ++A+PW G+E+ G L SP+ GE D
Sbjct: 581 STSKAKKIWSSESFLSHNAAIAVPWCGIESMPGTLLSPSLGE-----------------D 623
Query: 660 LDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVS-LSP-LCKSKLKLLK 717
++Q DCF +R F E + K +ATWPEE L ++S + + +SP +CKS+ K L+
Sbjct: 624 VNQKCSLPSPDCFFLSRGFLSELIPKVSATWPEETLVDSSCQTQTVVSPTMCKSEYKFLR 683
Query: 718 SACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLPIR 754
SAC+ +SN HLWG V+VTA WDG IR Y NYGLP+R
Sbjct: 684 SACKG-MSNSHLWGQVIVTAGWDGYIRVYQNYGLPVR 719
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/755 (51%), Positives = 509/755 (67%), Gaps = 41/755 (5%)
Query: 6 NEEEEEQFFDTCEEISYVSDRDSD--CSEG--CSSSVEHLADSVLCYSQSEIWTGYPQSV 61
NE+E+ Q+FD +++ S DS C++ SS + A Y ++W G P SV
Sbjct: 7 NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQY---DVWAGSPGSV 63
Query: 62 NERRSKFLKLMGFILDQ-SLMNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHF 120
ERR+KFL MG LD+ S N+ D+ +S VDR+ E+SGAVLRT GF D+
Sbjct: 64 KERRNKFLNWMGLSLDRFSCDNSVDVCSDS---LGGGVDRVRESSGAVLRTLGFEDEFCS 120
Query: 121 SQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSDNDQDEIEIESRLQESGSS 180
S+SS+S E E L++ CRI + GA+ V ++ E S +E G
Sbjct: 121 SRSSMSRWSNEQDES----GLQEKFVCRIGNLDVGAEFDV--DEMGEGSEVSEFREVGLD 174
Query: 181 QSVSFDEFLGTPGSS-SSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRHG 239
+ V+ +E S SS VQ + R+ EE+ + V A ++VK+GWL +L +M+ I+DRHG
Sbjct: 175 RLVTINECQNISDSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHG 234
Query: 240 SA-TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298
L D G R++RVRV +KQ +ELS+LY GQ+ AHEGSIL+MKFS DG+Y
Sbjct: 235 EIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKY 294
Query: 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358
LAS GEDG VR+W+V+E ER + D+ + DP C+YFT+NHLS+L P+ +KEK+ K +SL
Sbjct: 295 LASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSL 354
Query: 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI 418
RK+SD CV+ PPKVFR+LEKPLHEF GHSSE+LDLSWS N +LLSSS DKTVRLW+VG
Sbjct: 355 RKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGC 414
Query: 419 DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCY 478
D CL++FSHNNYVT V FNPVDDNYFISGSIDGKVRIW + CQVVD+TDIRE+V+AVCY
Sbjct: 415 DHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCY 474
Query: 479 CPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538
PDG+GGIVG+MTG CRFY++ DN L ++Q+CL GKKK KRITGFQFSP DPS V+V
Sbjct: 475 RPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMV 534
Query: 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598
T ADS VR+L G NV+GK+K R AG+QM A+FTSDGKH+VS +DSN+Y+WN SN+
Sbjct: 535 TCADSQVRILHGTNVIGKYK--GLRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEG 592
Query: 599 KSS-SRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLE 657
+ + S+SKSI + E FL+ N SVAIPW G++ +P G Q ++L +++ L
Sbjct: 593 EPALSQSKSIRAFEHFLT-NASVAIPWCGMK-----YGNPENG--WQFHALDESSPNTL- 643
Query: 658 GDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKLLK 717
P FS +++FF E K +ATWPEEKLP +S +V S + KS+ K LK
Sbjct: 644 -------PFPSPASFSLSQEFFSESFPKGSATWPEEKLPTSSLVSVP-SKIHKSEHKFLK 695
Query: 718 SACQSILSNPHLWGLVVVTASWDGRIRTYLNYGLP 752
ACQS S+ H WGLV+VTA WDGRIR++ NYGLP
Sbjct: 696 -ACQST-SSSHAWGLVIVTAGWDGRIRSFHNYGLP 728
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 755 | ||||||
| TAIR|locus:2019494 | 647 | AT1G64610 "AT1G64610" [Arabido | 0.594 | 0.693 | 0.512 | 1.9e-140 | |
| TAIR|locus:2165700 | 709 | AT5G42010 "AT5G42010" [Arabido | 0.605 | 0.644 | 0.530 | 1.7e-139 | |
| TAIR|locus:2169769 | 698 | AT5G24320 "AT5G24320" [Arabido | 0.687 | 0.743 | 0.447 | 2.4e-136 | |
| TAIR|locus:2168606 | 654 | AT5G53500 "AT5G53500" [Arabido | 0.639 | 0.738 | 0.467 | 3.7e-116 | |
| TAIR|locus:2153443 | 825 | AT5G54200 "AT5G54200" [Arabido | 0.639 | 0.585 | 0.418 | 3.9e-106 | |
| TAIR|locus:2090146 | 883 | AT3G15470 "AT3G15470" [Arabido | 0.641 | 0.548 | 0.422 | 2.2e-101 | |
| TAIR|locus:2040731 | 903 | AT2G37670 "AT2G37670" [Arabido | 0.491 | 0.410 | 0.432 | 8.3e-97 | |
| TAIR|locus:2181733 | 905 | AT5G02430 "AT5G02430" [Arabido | 0.683 | 0.570 | 0.383 | 8.9e-92 | |
| TAIR|locus:2028539 | 593 | AT1G48870 [Arabidopsis thalian | 0.336 | 0.428 | 0.445 | 1.7e-69 | |
| UNIPROTKB|Q9XSC3 | 912 | WDR44 "WD repeat-containing pr | 0.396 | 0.327 | 0.350 | 3.6e-45 |
| TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1176 (419.0 bits), Expect = 1.9e-140, Sum P(3) = 1.9e-140
Identities = 242/472 (51%), Positives = 315/472 (66%)
Query: 160 VSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRK 219
VS +D D+ + +R S S+ ++ + S SF S + RD D +K
Sbjct: 106 VSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQ--RD--DLLKK 161
Query: 220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE 279
+ WLKKLG + +++ +++ H++ RV+ H KKQ +ELSS+ QE
Sbjct: 162 GAKSWLKKLGVLTHVLESMDCESVRTQLHQVA------RVQTH--KKQFKELSSMCIDQE 213
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339
F AH+GSIL MKFS DG+Y+AS GED VRVW + E ER D ++V + D S +YF +N
Sbjct: 214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272
Query: 340 SQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
SQ+ P+ ++ EK +K S LRKSSD TCVVLPP +F + EKPLHEF+GH E+LDLSWS+
Sbjct: 273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332
Query: 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458
G+LLSSS D+TVRLW+VG D CLR F+HNN+VT VAFNPVDDNYFISGSIDGKVRIW+V
Sbjct: 333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Query: 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518
RC+VVDYTDIR+IV+AVCY PD KG ++G+MTGNCRFY I +NQL +I + GKKK+
Sbjct: 393 TRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKV 452
Query: 519 PGKRITGFQFSPSDPS--KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576
KRI+G Q+ PSD KV+VTSADS +R++CGE+V+ K KAS+ R A+F SD
Sbjct: 453 ASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGEDVICKLKASSLRTTS----ASFISD 508
Query: 577 GKHVVSPSEDSNIYIWNYXXXXXX---XXXXXXXXXXXXFLSHNVSVAIPWV 625
GKH++S SEDS I +W+Y FLSHN SVAIPW+
Sbjct: 509 GKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFLSHNASVAIPWL 560
|
|
| TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 251/473 (53%), Positives = 315/473 (66%)
Query: 163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSS-SFVQPLPSRQDEESRDLVDAKRKVK 221
N I+ + L SS S S E L SS LP+ SR ++ +K
Sbjct: 141 NRAKNIDDQILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPN--SPMSR-YEESPKKGA 197
Query: 222 RGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRV-RVHPVKKQSRELSSLYTGQEF 280
+GWLKKLG + ++D+ T D E T R++ RV KKQ +ELSSL GQEF
Sbjct: 198 KGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKKQFKELSSLCVGQEF 253
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHL 339
AH+GSI+ MKFS DG+YLAS GED VRVW +IE ER D F+V ++D SC+YF +N
Sbjct: 254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAESDSSCVYFGMNDK 313
Query: 340 SQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
SQ+ P+ + EKI+K++ L RK S+ TC VLP KVF + E P HEF+GH+ E+LDLSWS+
Sbjct: 314 SQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEFRGHTGEILDLSWSE 373
Query: 399 NGFLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
GFLLSSS D+TVRLW+VG D C+RVFSH ++VT VAFNPVDDNYFISGSIDGKVRIW+
Sbjct: 374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
Query: 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
V + +VVDYTDIR+IV+A+CY PDGKG +VG+MTG CRFY DNQL I L GKKK
Sbjct: 434 VSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQLQLDRDISLHGKKK 493
Query: 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK-ASAFRVA-GSQMFATFTS 575
+P KRITGFQF P D KV+VTSADS +R++CG + + K K AS+ R S FA+FTS
Sbjct: 494 VPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTICKLKKASSLRTTLMSPTFASFTS 553
Query: 576 DGKHVVSPSEDSNIYIWNYXXXXXXXXXXX--XXXXXXXFLSHNVSVAIPWVG 626
DGKH+VS E+S I++W++ FLS NVSVAIPW+G
Sbjct: 554 DGKHIVSTIEESGIHVWDFSQPNKKASSQKPKTIRSYEGFLSRNVSVAIPWLG 606
|
|
| TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 2.4e-136, Sum P(3) = 2.4e-136
Identities = 246/550 (44%), Positives = 341/550 (62%)
Query: 104 NSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVVSD- 162
N AVL + DD FS S S E ++ + + C+ ++ + +V+ +
Sbjct: 84 NESAVLMSLKSDDD-EFSSSRCDS--FSPSESVDRVV--NESLCK-EEGEVDSGMVLRNL 137
Query: 163 NDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKR 222
D+ +I S L S SS VS D+ + G P+ + EE R++ ++VK
Sbjct: 138 GFVDDGDISSSLC-SLSSSPVS-DKIVKEHGEPKLLPDPMVA---EEEREVSGIMKRVKE 192
Query: 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA 282
WL +L ++ ++ + G G R+ RV+V KK+++ELS+L+ GQE A
Sbjct: 193 KWLSRL---YKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSALFKGQEIQA 249
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
HEG+IL MKFS DG+YLAS GEDG +RVW V+E ER + DV DPSC+YF ++ LS+L
Sbjct: 250 HEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSEL 309
Query: 343 IPIDVDKEKIDKT-KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
P+ V+K+ I + S RK+++ CV++PPK+FR+L+KPLHEF GHS ++LD+SWSKN
Sbjct: 310 RPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNR 369
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
LLS+S D +VRLWQ+G + CL +FSHNNYVTSV FNPVDD++FISGSIDGKVRIW +C
Sbjct: 370 LLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQC 429
Query: 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521
QVVD+ D R IV+AVCY PDG+ I+GT+T +CRFY++ + L ICL KKK K
Sbjct: 430 QVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHCLQLDGHICLHNKKKSSNK 489
Query: 522 RITGFQF----SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577
RI GFQF +DPS+V+V SADS VR++ G NVV K+K S R AG+Q+ A+FT+DG
Sbjct: 490 RIIGFQFLLQFDSTDPSRVMVASADSQVRIISGRNVVHKYKGS--RNAGNQISASFTADG 547
Query: 578 KHVVSPSEDSNIYIWNYXX-----XXXXXXXXXXXXXXXXF--LSHNVSVAIPWVGLET- 629
KH+VS +DS++Y+WN F S +VSVAIPW G
Sbjct: 548 KHIVSACDDSSVYVWNCVGHDPEQSSPGFFSHTKRLKIRSFEKFSADVSVAIPWCGFTPV 607
Query: 630 -TAGALPSPT 638
+ G+ SP+
Sbjct: 608 LSGGSELSPS 617
|
|
| TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
Identities = 238/509 (46%), Positives = 320/509 (62%)
Query: 194 SSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGAMARIIDRH--GSATLKPGDHELT 251
SSS + Q ++ E+ R++ K+GWL +L +M D + ++
Sbjct: 135 SSSRYCQV---KETEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG--- 188
Query: 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311
G + RV+V KKQ++ELS+LY Q+ AH+G+IL MKFS DG++LAS GEDG VRVW
Sbjct: 189 YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVW 248
Query: 312 KVIEHE--RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT-KSLRKSSDLTCVV 368
KV+E + RL + + DPSC+YF +N LSQL P+ V++EK KT +S RK+SD CVV
Sbjct: 249 KVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVV 308
Query: 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN 428
PPKVFR++EKPL+EF+GH+ EVLD+SWSK+ +LLS+S DKTVRLW+VG + CL VF+HN
Sbjct: 309 FPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHN 368
Query: 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG 488
+YVTSV FNPV++NYF+SGSIDGKVRIW + C VVD+ D+++I+SAVCY PDG+GGI+G
Sbjct: 369 SYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIG 428
Query: 489 TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548
++ G+CRF+++ L +QI L KKK KRITGFQF P +P+KV+V SADS VR+L
Sbjct: 429 SLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVRIL 488
Query: 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYXXXXXXXXXXXXXX 608
G NVV K+K S A+ TSDGKH+VS EDSN+YIW+
Sbjct: 489 QGNNVVRKYKGVC--KTRSLTSASLTSDGKHIVSACEDSNVYIWSNDEESETKKIRSFER 546
Query: 609 XXXXFLSHNVSVAIPWVGLETTAGALP--SPT---FGEKMQRNSLKQNNHQNLEGDLDQN 663
S N SVA W G LP SP+ E S+ + + E +L N
Sbjct: 547 -----FSANASVAATWCGFSDHNTTLPFSSPSCLSHNEGFVPGSISKGSATWPEENLPAN 601
Query: 664 MPHSPSDC-FSHARDFFLEYMTKSAA-TW 690
P S S SH + Y S++ +W
Sbjct: 602 -PLSTSAMNASHYKFLKSSYQRASSSLSW 629
|
|
| TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 3.9e-106, Sum P(3) = 3.9e-106
Identities = 211/504 (41%), Positives = 289/504 (57%)
Query: 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
RV+V K +EL++L+ QE AH+GSI ++KFSLDG+YLAS GED +++WKV+E E
Sbjct: 337 RVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYLASAGEDCVIQIWKVVESE 396
Query: 318 R---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374
R L D Q+ L+ N + P+ + ++ +T RKS L V++P VF
Sbjct: 397 RKGELLSMDKQEDGSINLFLLANGSPE--PVSMSPKRRGRTSFSRKSVSLDNVLVPEAVF 454
Query: 375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
L EKP+ F GH +VLDLSWSK+ LLSSS DKTVRLW + CL+VFSH++YVT +
Sbjct: 455 GLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCI 514
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
FNPVDDNYFISGS+D KVRIW + QVVD+ D+ E+V+A CY PDG+G +VG+ G C
Sbjct: 515 QFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSYKGTC 574
Query: 495 RFYDIKDNQLYQQNQICLQG-KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553
Y+ DN+L Q+ +I L+ KKK K+ITGFQF S+V+VTSADS RV+ G ++
Sbjct: 575 CLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRTRVVDGVDL 634
Query: 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYXXXXXXXXXXXXXXXXXX- 612
V KFK FR SQ+ A+ TS+GK +VS SEDSN+Y+WNY
Sbjct: 635 VHKFKG--FRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVTVTNSYE 692
Query: 613 -FLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDC 671
F +VSVA PW G + SP +++S NN+ + N +
Sbjct: 693 NFYCRDVSVAAPWPGKISNNHTNNSP------EQSSFTANNNPPTPVNDPTNNKTVTNGI 746
Query: 672 FSHARDFFLEYMTKSAATWPEEKLPNASPKAVXXXXXXXXXXXXXXXACQSILSNPHLWG 731
S A + + + + +ATWPEEKL A+ + S W
Sbjct: 747 ISSATNRY--FFDRVSATWPEEKLLLAAKNRARTSPRVSVDMSNIQVNTKPSAS---AWS 801
Query: 732 LVVVTASWDGRIRTYLNYGLPIRI 755
+V+VT S G IR + N+G P+R+
Sbjct: 802 MVIVTGSLRGEIRIFQNFGFPVRL 825
|
|
| TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 216/511 (42%), Positives = 296/511 (57%)
Query: 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317
RVRV K S+EL++LY QE AH GSI ++KFSLDG+YLAS GED + +W+V+E E
Sbjct: 387 RVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEAE 446
Query: 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377
+ G + D P L N + P + + +T RKS L + +P +F L
Sbjct: 447 K-KGELLLDR-PELLLLATNGSPE--PTTMSPRRRGRTSISRKSLSLENIFVPDSLFGLS 502
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
EKP FQGH +VLDL+WSK+ LLSSS DKTVRLW + CL+VFSH++YVT + FN
Sbjct: 503 EKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFN 562
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
PVDD YFISGS+D KVR+W + QVVD+ D+ E+V++ CY PDG+G +VG+ G+CR Y
Sbjct: 563 PVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMY 622
Query: 498 DIKDNQLYQQNQICLQGKKKLPG-KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK 556
DN+L Q++QI LQ KKK K+ITGFQF P S+V+VTS+DS +RV+ G ++V K
Sbjct: 623 SASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLVNK 682
Query: 557 FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYXXXXXXXXXX------XXXXXX 610
K FR SQ+ A+ T+DGK+VVS SEDS++YIW Y
Sbjct: 683 LKG--FRNTSSQISASITADGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTNSY 740
Query: 611 XXFLSHNVSVAIPWVGLETTA--GALPSPTF-GEKMQRNSLKQNNHQNLEGDLDQNMP-- 665
F S +VS AI W G+ +T G F G +++ NH D +
Sbjct: 741 EHFHSQDVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTANHPPTPVDQLGTVERL 800
Query: 666 HSPSD-CFSHARDFFLEYMTKSAATWPEEKLPNASPKAVXXXXXXXXXXXXXXXACQSIL 724
+SP + S A + + + + +ATWPEEKL A ++ ++
Sbjct: 801 NSPRNGIISSATNGY--FFDRMSATWPEEKLLFARNRSGNRLSTDMSSSNGNSG---NVS 855
Query: 725 SNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
++ WG+V+VTA G IRT+ N+GLPIRI
Sbjct: 856 AS---WGMVIVTAGLRGEIRTFQNFGLPIRI 883
|
|
| TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.3e-97, Sum P(4) = 8.3e-97
Identities = 168/388 (43%), Positives = 239/388 (61%)
Query: 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303
K DH+ G+ V+V P K +ELS+L+ QE AHEG++ T+KFS D YLASGG
Sbjct: 366 KGKDHKH--GKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 423
Query: 304 EDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360
D + VW+V E E + +G + PS + N ++ V+K+K K S R+
Sbjct: 424 ADRVIHVWEVQECELMSMNEG-SLTPIHPSLCDSSGNEITV-----VEKKKKGKGSSGRR 477
Query: 361 SSDLTCVV-LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID 419
+ + V +P VF +KP+ +GH +LDLSWSK+ LLSSS DKTVRLW +
Sbjct: 478 HNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETK 537
Query: 420 RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC 479
CL++F+HN+YVT + F+PVD+NYF+SGS+D K+RIW ++ VV+++D+ E+V+A CY
Sbjct: 538 TCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYT 597
Query: 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR-ITGFQFSPSDPSKVIV 538
PDG+G ++G+ G CR YD +D +L Q NQI +Q KK KR IT FQFSP +PS+V+V
Sbjct: 598 PDGQGALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLV 657
Query: 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYXXXX 598
TSADS +R+L G V+ KFK FR SQ+ A+++ DGK+++ SEDS +Y+W
Sbjct: 658 TSADSRIRILDGSEVIHKFKG--FRNTCSQLSASYSQDGKYIICASEDSQVYLWK--NDF 713
Query: 599 XXXXXXXXXXXXXXFLSHNVSVAIPWVG 626
F +VS A+PW G
Sbjct: 714 HRTRSTLTTQSHEHFHCKDVSAAVPWHG 741
|
|
| TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 207/540 (38%), Positives = 285/540 (52%)
Query: 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD 295
D GS T P E Q + V+V K ++LS+L+ QE AH+G I TMKFS D
Sbjct: 363 DSTGSGTSSPKVAEKNNEQANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPD 422
Query: 296 GQYLASGGEDGTVRVWKVIEHE--RLDGFDVQDTDPSCLYFTINHLS-QLIPIDVDKEKI 352
LAS GED + VW+V E E ++ + PS T + DK+K
Sbjct: 423 SHLLASAGEDCAIHVWEVQECEIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKK 482
Query: 353 DKTKSLRKSSDLTCVVLPPK-VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTV 411
KT +K + + V P+ VF L +KP+ F GH +VLDLSWS++ LLSSS DKTV
Sbjct: 483 GKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTV 542
Query: 412 RLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471
RLW + CL++F+HN+YVT V FNP+D++YFISGS+D K+RIW + QVV++ D++E
Sbjct: 543 RLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKE 602
Query: 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531
+V+AVCY PDG+ VG++ G+CR Y +D +L Q NQI LQ KKK K+IT FQFSP
Sbjct: 603 MVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPI 662
Query: 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591
+PS+V+VTSADS +RVL G +V KF+ F+ SQM A++T D KH+V SEDS +Y+
Sbjct: 663 NPSEVLVTSADSRIRVLDGTELVQKFRG--FKNMNSQMTASYTVDAKHIVCASEDSQVYV 720
Query: 592 WNYXX---XXXXXXXXXXXXXXXXFLSHNVSVAIPWVGLETTAGALPSPTFGEKM--QRN 646
W + F +VSVA+PW G+ G PS K ++
Sbjct: 721 WKHEEPRLGITGRKTVTMCTSYETFPCKDVSVAVPWNGV--VKGEPPSTQHQSKRNPKKP 778
Query: 647 SLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLE-YMTKSAATWPE---------EKLP 696
S +N +P P D E + AT E +
Sbjct: 779 STTTTTPENTTTGKKSGLPPLPKKNNDGTADGATEQHQEDDPATHISHNESENNTGESIK 838
Query: 697 NASPKAVXXXXXXXXXXXXXXXACQSILS-NPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755
+ ++ S P WG+V+VTA+ G+IRTY N+GLP R+
Sbjct: 839 HGDSPSISISSRISSWSWFDSSGSHGTHSVQPTAWGMVIVTATIKGQIRTYQNFGLPRRV 898
|
|
| TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 1.7e-69, Sum P(3) = 1.7e-69
Identities = 118/265 (44%), Positives = 154/265 (58%)
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426
V+ P K F + E P E GH+ +VLDL+WS + LLS+S DKTVRLW+ G D+CL VF
Sbjct: 251 VLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFH 310
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486
HNNYVT V FNPV+ N F SGSIDGK RIW + +VV +TD+R+ +SA+ Y P+G G +
Sbjct: 311 HNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFV 370
Query: 487 VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546
VG +TGNCRFY I DN + QI ++G+ RIT +F P K++V+S DS VR
Sbjct: 371 VGCITGNCRFYQILDNDVIMDEQILIRGRN-----RITAVEFCPGSSEKILVSSEDSKVR 425
Query: 547 VLCGENVVGKFKA-SAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWNYXXXXXXXXXX 604
+ ++ KFKA S F G Q A+F S GKH++S +Y+WN
Sbjct: 426 IFDKTQMIHKFKAPSNF---GRQSSASFVSSTGKHILSVRRGVGVYLWN-NDAFPSRKGA 481
Query: 605 XXXXXXXXFLSHNVSVAIPWVGLET 629
F S VS W ET
Sbjct: 482 KSSRSFEYFHSPGVSAVAAWTQPET 506
|
|
| UNIPROTKB|Q9XSC3 WDR44 "WD repeat-containing protein 44" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 3.6e-45, P = 3.6e-45
Identities = 111/317 (35%), Positives = 187/317 (58%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H G++ TMKFS G+ LAS G+D VR+W + + FD + + N ++
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWAL-----KNAFDYFNN----MRMKYNTEGRV 559
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPP--KVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
P +E ++ +KS + + P K ++P +++GH++++LDLSWSKN
Sbjct: 560 SP-SPSQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNY 618
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
FLLSSS DKTVRLW + CL F H ++VT++AF+P DD YF+SGS+DGK+R+W +
Sbjct: 619 FLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPD 678
Query: 461 CQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKK 516
+V + ++ ++++A +C +GK ++GT G C FYD + + + Q + +G+
Sbjct: 679 KKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRN 738
Query: 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576
K+ G++ITG + P + +K++VTS DS +R+ ++ K + + SQ+ A+F+ D
Sbjct: 739 KV-GRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHD 796
Query: 577 GKHVVSPSEDSNIYIWN 593
++VS SED +YIW+
Sbjct: 797 FNYLVSGSEDKYVYIWS 813
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 755 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 51/327 (15%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
+ H G + + FS DG+ LA+G DGT++VW + L
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-------------ETGELLRTLKG 49
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL-LEKPLHEFQGHSSEVLDLSW 396
H + + D T SSD T +++ L + + GH+S V +++
Sbjct: 50 HTGPVRDVAASA---DGTYLASGSSDKTI-----RLWDLETGECVRTLTGHTSYVSSVAF 101
Query: 397 SKNGFLL-SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
S +G +L SSS DKT+++W V +CL H ++V SVAF+P D + S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160
Query: 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513
+W++R + V T V++V + PDG+ + + G + +D+ + L+
Sbjct: 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT----LR 216
Query: 514 GKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLVRV--LCGENVVGKFKA---SAFRVAG 566
G + + FSP ++ S D +RV L V S +A
Sbjct: 217 GHE----NGVNSVAFSPDG---YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA- 268
Query: 567 SQMFATFTSDGKHVVSPSEDSNIYIWN 593
++ DGK + S S D I IW+
Sbjct: 269 ------WSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 19/230 (8%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435
+ L +GH+ V D++ S +G +L S S+DKT+RLW + C+R H +YV+SVA
Sbjct: 41 GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100
Query: 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
F+P D S S D +++W+V + + + V++V + PDG + G
Sbjct: 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
Query: 495 RFYDIKDNQLYQQNQICLQGKKKLPG--KRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552
+ +D++ + L G + FSP D K++ +S+D +++ +
Sbjct: 160 KLWDLRTGKCVAT----------LTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLW--DL 206
Query: 553 VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSS 602
GK + F+ DG + S SED I +W+ + +
Sbjct: 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (234), Expect = 2e-20
Identities = 82/393 (20%), Positives = 143/393 (36%), Gaps = 42/393 (10%)
Query: 264 VKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER-LDGF 322
+ S + HE SI ++ FS DG+ L SG DGT+++W + E+ +
Sbjct: 45 LLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL 104
Query: 323 DVQDTDPSCLYFTINHLSQLIPI------------DVDKEKIDKTKSLRKSSDLTCVVLP 370
+ + I + D+ S +T +
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164
Query: 371 P---------------KVFRLLE-KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVR 412
P K++ L KPL GH+ V L++S +G + S S+D T+R
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224
Query: 413 LWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR-- 470
LW + + LR + + V+ D + SGS DG +R+W++R + T
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284
Query: 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530
V +V + PDGK G+ G R +D++ +L K ++ FSP
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------TLKGHEGPVSSLSFSP 338
Query: 531 SDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590
V S D +R+ ++ + + +F+ DG+ V S S D +
Sbjct: 339 DGSLLVSGGSDDGTIRL---WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 591 IWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIP 623
+W+ S + S ++
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.8 bits (229), Expect = 8e-20
Identities = 86/336 (25%), Positives = 133/336 (39%), Gaps = 38/336 (11%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336
+ H S+ ++ FS DG+ LASG DGT+++W + + L S L F+
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
+ SSD T + +LL GHS V+
Sbjct: 209 D---------------GGLLIASGSSDGTIRLWDLSTGKLLRS---TLSGHSDSVVSSFS 250
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
L S S+D T+RLW + L + H++ V SVAF+P D SGS DG VR
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVR 309
Query: 455 IWEVRRCQVVDYTDIREI---VSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQLYQQNQI 510
+W++ +++ ++ VS++ + PDG + G G R +D++ +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL----- 364
Query: 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF 570
K + FSP D V S D VR+ + G +
Sbjct: 365 ----KTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLW--DLSTGSLLRNLDGHTSRVTS 417
Query: 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKS 606
F+ DGK + S S D+ I +W+ KS S S
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 26/241 (10%)
Query: 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
+GH+ V +++S +G L + S D T+++W + LR H V VA +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMT-GNCR 495
D Y SGS D +R+W++ + V T VS+V + PDG+ + + +
Sbjct: 61 A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIK 118
Query: 496 FYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRV--LCGEN 552
+D++ + L+G + FSP + + S D +++ L
Sbjct: 119 VWDVETGKC----LTTLRGHT----DWVNSVAFSPDG--TFVASSSQDGTIKLWDLRTGK 168
Query: 553 VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS---SSRSKSIWS 609
V V F+ DG+ ++S S D I +W+ S + S
Sbjct: 169 CVATLTGHTGEV----NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224
Query: 610 C 610
Sbjct: 225 V 225
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329
+L + H G + ++ FS DG+ L S DGT+++W D+
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211
Query: 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHS 388
H + + + L S + +V+ L + + GH+
Sbjct: 212 LGTL--RGHENGVNSVAF-----SPDGYLLASGSEDGTI---RVWDLRTGECVQTLSGHT 261
Query: 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQ 415
+ V L+WS +G L S SAD T+R+W
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (147), Expect = 1e-09
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 27/219 (12%)
Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
P L G +R+ ++ S L +L H S+L++ FS DG+ LASG
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS------GHSSSVLSVAFSPDGKLLASGSS 304
Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
DGTVR+W D++ H + + + S D
Sbjct: 305 DGTVRLW-----------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG--SDDG 351
Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS-SADKTVRLWQVGIDRCLR 423
T +++ L + S VL +S+S +G ++SS S D TVRLW + LR
Sbjct: 352 TI-----RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406
Query: 424 VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
H + VTS+ F+P D SGS D +R+W+++
Sbjct: 407 NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
K L +GH+ V +++S +G L S S D TVR+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
+ H G + ++ FS DG LASG +DGTVRVW
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312
+ H G + ++ FS DG+YLASG +DGT+++W
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLW 414
+ L +GH+ V +++S +G +L S S D T++LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-07
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
L+ H VTSVAF+P D Y SGS DG +++W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+ LR H VTSVAF+P D N SGS DG VR+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 380 PLHEFQGHSSEVLDLSW--SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
P+ QGH+ +V +S+ S L S+ AD V +W V + + V H++ +TS+ +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176
Query: 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV 464
N +D + + S D K+ I + R +V
Sbjct: 177 N-LDGSLLCTTSKDKKLNIIDPRDGTIV 203
|
Length = 493 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 4e-04
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 23/161 (14%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
HEG + ++ FS DG L SGG +DGT+R+W D T+
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW--------------DLRTGKPLKTLEG 369
Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398
S ++ + D S+D T + L GH+S V L +S
Sbjct: 370 HSNVLSVSF---SPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGHTSRVTSLDFSP 422
Query: 399 NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438
+G L S S+D T+RLW + FS + V + +
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 17/93 (18%)
Query: 380 PLHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGID----------RCLRVFSH 427
P+ + +GH+S +LDL ++ + L S S D T+R+W++ + +C+ + H
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGH 124
Query: 428 NNYVTSVAFNPVDDNYFI--SGSIDGKVRIWEV 458
++ + +NP+ NY+I S D V IW++
Sbjct: 125 KKKISIIDWNPM--NYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.77 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.65 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.63 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.56 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.52 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.48 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.45 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.44 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.4 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.32 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.25 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.18 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.17 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.14 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.13 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.12 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.11 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.1 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.06 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.06 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.05 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.05 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.0 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.99 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.96 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.94 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.92 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.91 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.89 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.82 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.8 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.78 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.76 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.75 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.72 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.66 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.65 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.62 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.59 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.58 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.56 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.55 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.48 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.47 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.45 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.4 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.39 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.39 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.24 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.22 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.2 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.19 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.09 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.04 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.01 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.0 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.95 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.95 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.93 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.83 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.83 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.82 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.81 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.81 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.8 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.75 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.75 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.71 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.68 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.64 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.61 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.57 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.55 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.52 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.5 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.48 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.43 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.32 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.27 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.19 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.19 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.19 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.14 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.1 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.1 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.04 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.03 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.01 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.99 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.9 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.84 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.7 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.64 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.58 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.58 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.53 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.51 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.42 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.4 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.36 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.32 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.32 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.25 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.15 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.96 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.86 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.73 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.58 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.56 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.38 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.26 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.26 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.99 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.95 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.94 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.92 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.87 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.8 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.79 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.77 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.31 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.2 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.09 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.05 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.74 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.73 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.65 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.49 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.29 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.23 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.01 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.61 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.47 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.45 | |
| PRK10115 | 686 | protease 2; Provisional | 92.45 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.26 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.21 | |
| PF08145 | 260 | BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR01295 | 92.06 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.99 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 91.95 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.94 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.6 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.78 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.55 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.24 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.12 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.86 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.35 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.23 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.14 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.08 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.65 | |
| PLN02153 | 341 | epithiospecifier protein | 88.48 | |
| PLN02193 | 470 | nitrile-specifier protein | 88.47 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.6 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 87.44 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.32 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.9 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.6 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.89 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.72 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.46 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.35 | |
| PRK10115 | 686 | protease 2; Provisional | 85.25 | |
| PLN02153 | 341 | epithiospecifier protein | 85.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.93 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 84.88 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 84.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.64 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.19 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 83.57 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 82.42 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.71 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.47 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 81.26 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 81.21 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 81.04 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 80.86 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 80.65 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.64 |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=692.03 Aligned_cols=674 Identities=43% Similarity=0.724 Sum_probs=498.5
Q ss_pred CCCCCcccccccccccccccccCCCCCCCCCCCCCCcccccccccccCCccccccCCCCcHHHHHHHHHHHhCccccccc
Q 004410 1 MAGVSNEEEEEQFFDTCEEISYVSDRDSDCSEGCSSSVEHLADSVLCYSQSEIWTGYPQSVNERRSKFLKLMGFILDQSL 80 (755)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (755)
|.-..+ |||++|||+.|+|++ . |++|+..|.||.|||+|||++|||+....+
T Consensus 1 ~~~~~~-ee~~~f~~~~~~~~~-------------------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~ 52 (712)
T KOG0283|consen 1 MGAPGE-EEEDRFFDASERVSP-------------------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTL 52 (712)
T ss_pred CCCccc-cccccccccccccCc-------------------------c--hhhhhcCccchhHHHHHHhhhhcccccccc
Confidence 444444 555999999999981 0 999999999999999999999998766444
Q ss_pred ccccCCCcccccccccccccccccccceeccCCCCCCcccccccccccCCCCccccccccccCCcceeeeeCCCCceEEE
Q 004410 81 MNAEDLEDESRVRTQLDVDRITENSGAVLRTSGFGDDIHFSQSSISSKLCEAPEVLEHFTLKDHAACRIDDWGKGADLVV 160 (755)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~g~~~~~ 160 (755)
++.+............++ ..+.-.+-++..++ ++.-++.++-. . ......+.. +|.|.+++|
T Consensus 53 ~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~-~~~~~~~~s~~-~------~~~~~~~~~--~~~~~e~~v 114 (712)
T KOG0283|consen 53 SRSETVDRLSSSSVESNV--------DESNHNSVEDTDSE-QCRPSSSSSKS-R------VSQSSSSIE--LDTGDEFSV 114 (712)
T ss_pred cccccccccccccccccc--------cccccccccccccc-cCCcccccccc-c------cccccccee--ecccceeeE
Confidence 433221111111111111 00000011111111 11100000000 0 001111111 689999999
Q ss_pred ccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcch-----------hhhh--hhhhhhhccccccc
Q 004410 161 SDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEE-----------SRDL--VDAKRKVKRGWLKK 227 (755)
Q Consensus 161 ~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~-----------~~~~--~~~~k~~~~~w~~~ 227 (755)
++...++++++ +.++++..++++++|+.+.+.++. +.++++++..+ .... ....++....|++.
T Consensus 115 ~e~~~~~~~~~--~sd~~~~~~~~~e~~e~~~g~~~~-v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~ 191 (712)
T KOG0283|consen 115 SENPEDGSVNR--LSDVGTGASSTLEELESSPGESSR-VKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKS 191 (712)
T ss_pred eeccCcccccc--ccCCCcccccccccccCCcCcccc-hhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhh
Confidence 99999999998 999999999999999999998888 89988866553 1111 11234444559998
Q ss_pred ccceeeeeccCcc---eeecCCCCe-----e--EEeeCC--------CeEEEEECCCCcccccccccceeee-cccccEE
Q 004410 228 LGAMARIIDRHGS---ATLKPGDHE-----L--TLGQRM--------RRVRVHPVKKQSRELSSLYTGQEFL-AHEGSIL 288 (755)
Q Consensus 228 ~~~~~~~~~~~~~---~~~spdg~~-----l--asgs~d--------g~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~ 288 (755)
++.+....+.... -.+..+..- + .++..+ ..+++-...+..+++.+++..|++. +|+++|+
T Consensus 192 ~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw 271 (712)
T KOG0283|consen 192 LKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIW 271 (712)
T ss_pred ccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEE
Confidence 8877665443211 111111111 0 111111 5788889999999999999999999 9999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC-cceeeeeeeeecCCceEE
Q 004410 289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-EKIDKTKSLRKSSDLTCV 367 (755)
Q Consensus 289 ~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 367 (755)
+|+||+||+|||+||+||.|+||.+...+. .........++.+.......+....... ................++
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~ 348 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV 348 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence 999999999999999999999999987554 2333344455555555544444444443 222334444555556668
Q ss_pred EeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE
Q 004410 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG 447 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg 447 (755)
.++.+.+.+.++|++.+.||.+.|++|.|+.+++|+++++|+|||||++...+|+++|.|.+.||||+|+|.|++||++|
T Consensus 349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
+.||+||||++...+++.|.+.+..|+++||.|||++.++|+.+|.|++|++...+++....+.+...++...++||+++
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred ccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887777999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEEC--CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC--cccCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCG--ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD--KSSSR 603 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~--~~~~~ 603 (755)
|.|.+...|+++++|..|||+|+ ..+..++++ .........+.|+.||++|+++++|..||||++.... .....
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG--~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~ 586 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG--FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKK 586 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhcc--cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcccccccc
Confidence 99988889999999999999999 667788887 7777888999999999999999999999999997665 23456
Q ss_pred CccccceeeeecCCeEEEEcCCCCCcCCCCCCCCCCCccccccccccCCCCCcCCCcCCCCCCCCCCCccCCcccccccC
Q 004410 604 SKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLEYM 683 (755)
Q Consensus 604 ~~~~~~~~~f~~~~~~va~~w~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (755)
.+.++++++|.+..++++++|+|..........|...... . +...+ .. .+....+ ..
T Consensus 587 ~~~~~s~e~f~s~~vs~a~~w~g~~~~n~ss~~p~~~~~~---~------~~~~~----------~~-~s~~~~~---~~ 643 (712)
T KOG0283|consen 587 TKSIRSYEHFSSVDVSVAIPWPGFHAHNPSSNLPPLIKAA---L------RPVNE----------FK-LSSPMRS---LN 643 (712)
T ss_pred ccccccccccccccccccccccccccccccccCCCCcccc---c------Ccccc----------cc-cCCcccc---cc
Confidence 6678899999999999999999986544211111111000 0 00000 00 0000001 12
Q ss_pred CCCccCCCCCCCCCCCCCcccCCccchhhhhhhhhhccccC-CCCCCCceEEEecCCCCEEeeeeccCccccC
Q 004410 684 TKSAATWPEEKLPNASPKAVSLSPLCKSKLKLLKSACQSIL-SNPHLWGLVVVTASWDGRIRTYLNYGLPIRI 755 (755)
Q Consensus 684 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~t~~~dg~ir~~~n~~~~~~~ 755 (755)
.++++|||||+|..... + +...+..++++...|+... ..+++||+|||||+|||.||+|||||||+++
T Consensus 644 ~~~s~t~~e~~~~~s~~--~--~~~~~~~~~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 644 SRGSATWPEEKLLDSPG--A--SASSRSSIKFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCcccccccccC--c--ccccccccccccCCCccccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 38999999999876421 1 2233455577777777653 3478999999999999999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=349.10 Aligned_cols=336 Identities=19% Similarity=0.311 Sum_probs=289.2
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+.-.++.+|...|-+++|+|+|..||+|+.|.++|+||..+.. +..+.++|...|.|++|+|||+.||+|+.
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCcchhhcccc
Confidence 34456788999999999999999999999999999999976543 34568999999999999999999999999
Q ss_pred CCcEEEEEccCCeee-eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 305 DGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
||.|++||..+++.+ ..+..+...+.+++|.+.+...- .......+.|+.+.+|+... ++.+..
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~-----------~r~las~skDg~vrIWd~~~----~~~~~~ 242 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP-----------CRRLASSSKDGSVRIWDTKL----GTCVRT 242 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCC-----------ccceecccCCCCEEEEEccC----ceEEEE
Confidence 999999999988765 45677777788888877654321 12445677889999998775 345788
Q ss_pred ecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEe-----------eC------------
Q 004410 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN-----------PV------------ 439 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fs-----------p~------------ 439 (755)
+.||+..|+|+.|--+|+|++++.|++|++|+...|.+.+.+. |...|+.|+.+ |.
T Consensus 243 lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred eccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999999999999999999999999999999999884 99999999887 20
Q ss_pred ------------CCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 440 ------------DDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 440 ------------d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.+..|++|+.|.++.+|+....+ .+ ...+|...|..+.|+||+++||+++.|..|++||.++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l 402 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL 402 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence 23359999999999999976543 44 68899999999999999999999999999999999999976
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ...|-..|+.++|+. |.++|++|+.|.+++||+..+.+..+.. .+|...|.++.|+|||..+++|+.
T Consensus 403 as--------fRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DL--pGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 403 AS--------FRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDL--PGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred hh--------hhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccC--CCCCceEEEEEecCCCceeecCCC
Confidence 54 344678999999999 9999999999999999999886555554 889999999999999999999999
Q ss_pred CCcEEEEE
Q 004410 586 DSNIYIWN 593 (755)
Q Consensus 586 Dg~I~iWd 593 (755)
|..+++|.
T Consensus 472 dkv~~lw~ 479 (480)
T KOG0271|consen 472 DKVLRLWR 479 (480)
T ss_pred ceEEEeec
Confidence 99999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=336.66 Aligned_cols=278 Identities=22% Similarity=0.375 Sum_probs=251.2
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~Dg~I~vWdv 313 (755)
..+..+.|++|++.||||+.+|.++||..... ...++|.+|...|.++.|+|. +..||||+.||+|++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCc-------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 44666999999999999999999999996543 355789999999999999996 678999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+. .++..+.+|...|..
T Consensus 249 ~~e--------------------------------------------------------------~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 249 SQE--------------------------------------------------------------TPLQDLEGHLARVSR 266 (459)
T ss_pred CCC--------------------------------------------------------------cchhhhhcchhhhee
Confidence 653 346778899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~ 470 (755)
++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| ||.++++|+.|..-||||++++.++ .+.+|.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccc
Confidence 9999999 9999999999999999998876655 5999999999999 9999999999999999999999877 788899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..|.+|.|+|+|..||+|+.|++++|||++....+.. ...|..-|+.+.|.|..+.+|++++.|++++||..
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~--------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT--------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeeccccccee--------cccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 9999999999999999999999999999998877543 45678899999999988999999999999999998
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.+....... .+|.+.|.++.+++|+++|+|++.|.+|++|.
T Consensus 418 ~~~~~~ksL--aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSL--AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhh--cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 876554444 78999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=291.74 Aligned_cols=293 Identities=19% Similarity=0.310 Sum_probs=256.1
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+++++|...|.++.|++|.+++++++.||.+.|||.-+..++ +.+.--...|..++|+|.|+++|.|+-|+..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-------haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-------HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-------eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 678999999999999999999999999999999997655443 2244456789999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.||++.+.+.-.. .+...++.+|.
T Consensus 122 siy~ls~~d~~g~--------------------------------------------------------~~v~r~l~gHt 145 (343)
T KOG0286|consen 122 SIYPLSTRDAEGN--------------------------------------------------------VRVSRELAGHT 145 (343)
T ss_pred EEEeccccccccc--------------------------------------------------------ceeeeeecCcc
Confidence 9999875421000 01245678999
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
+.+.++.|-+|++|++++.|.+..+||+++++.+..| +|.+.|.++.+.|.+++.|++|+-|+..+|||++.+.++ .+
T Consensus 146 gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF 225 (343)
T KOG0286|consen 146 GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF 225 (343)
T ss_pred ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence 9999999999889999999999999999999999999 499999999999989999999999999999999999888 58
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.+|...|.+++|.|+|.-|++|+.|+++++||++..+.+..+. .......|++++|+. .+++|++|..|.++.
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys------~~~~~~gitSv~FS~-SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS------HDSIICGITSVAFSK-SGRLLFAGYDDFTCN 298 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec------cCcccCCceeEEEcc-cccEEEeeecCCcee
Confidence 8999999999999999999999999999999999887665433 233456899999999 899999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+||.-.... ...+.+|...|.++..+|||.-|+||+.|..|+||.
T Consensus 299 vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 299 VWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999765443 444489999999999999999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=304.19 Aligned_cols=312 Identities=20% Similarity=0.279 Sum_probs=262.8
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+....||.-..-.+.-....+...+.||.++|.|++|+|+|..||||+.|.++|+||+.+.....+.+.+..-+.|+.|.
T Consensus 87 ~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 87 DVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred heeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC
Confidence 44455555443333333344567789999999999999999999999999999999999999999999999989999988
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-----C-eEEEEeCCC
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-----G-FLLSSSADK 409 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-----~-~L~s~s~Dg 409 (755)
|++. .+..++.++.+.+|+++.....+ ..+.+|...|++|+|.|- . +|++++.||
T Consensus 167 PDgk----------------~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 167 PDGK----------------KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CCcc----------------hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCC
Confidence 8863 34567889999999998766544 457899999999999872 2 899999999
Q ss_pred cEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEc--------
Q 004410 410 TVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYC-------- 479 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~s-------- 479 (755)
.|+|||+..++++..+ +|+..|+|+.|- ...++++|+.|++|++|+...+.+. .+.+|...|+.++.+
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence 9999999999999888 599999999996 4789999999999999999998877 578899999988776
Q ss_pred ---cCCC-------------------------eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 480 ---PDGK-------------------------GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 480 ---pdg~-------------------------~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
|.++ .|++|+.|+++.+|+....+.. ..+...|..-|+.+.|+|
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp-------i~rmtgHq~lVn~V~fSP- 377 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP-------ITRMTGHQALVNHVSFSP- 377 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc-------hhhhhchhhheeeEEECC-
Confidence 3333 4999999999999997654421 123456788999999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+++|++++.|..|++|++.+......+ .+|-+.|+.++|+.|.++|++|+.|.++++|++.+.+
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasf--RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASF--RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhh--hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 9999999999999999999986544443 7799999999999999999999999999999998765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=282.93 Aligned_cols=282 Identities=20% Similarity=0.357 Sum_probs=245.4
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
-+|++++.|.+||+|+..++. +.++++..++.|+.+...||+++||+|+. ..||+||+.++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n---------- 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN---------- 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------EEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC----------
Confidence 378999999999999966543 55677777889999999999999999986 579999998764
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
..|+.++.+|...|+.+.|..+| .+++|+
T Consensus 73 --------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs 102 (311)
T KOG0315|consen 73 --------------------------------------------------PNPVATFEGHTKNVTAVGFQCDGRWMYTGS 102 (311)
T ss_pred --------------------------------------------------CCceeEEeccCCceEEEEEeecCeEEEecC
Confidence 23678899999999999999999 999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEEEEEccCCCe
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~v~~spdg~~ 484 (755)
.||+++|||++.-.+.+.+.|..+|+++..+| +...|++|..+|.|++||+....+.. .......|.++...|||+.
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM 181 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE
Confidence 99999999999999999999999999999999 88999999999999999999876552 3344578999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc
Q 004410 485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV 564 (755)
Q Consensus 485 la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 564 (755)
++.+...|++++|++.+......+ ....+.+.|...|..+.++| +.++|++++.|.+++||+..+. .+......+|
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l--~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~-~kle~~l~gh 257 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASEL--EPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH 257 (311)
T ss_pred EEEecCCccEEEEEccCCCccccc--eEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc-eeeEEEeecC
Confidence 999999999999999875443322 23334677899999999999 9999999999999999999887 4444455788
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccC
Q 004410 565 AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSS 602 (755)
Q Consensus 565 ~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~ 602 (755)
...+..++||.||+||+||+.|+.+++|++..+++...
T Consensus 258 ~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 258 QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 99999999999999999999999999999999984443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=287.62 Aligned_cols=294 Identities=21% Similarity=0.349 Sum_probs=245.2
Q ss_pred cccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
...++.+|.+.|..++..+.+. .+++++.|..+.+|++..... ......+.+.||...|..+..++||++.++++.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--ccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3457888999999999988854 788899999999999886633 2334567799999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+++++||+.+++. .+.|.
T Consensus 85 ~~lrlWDl~~g~~--------------------------------------------------------------t~~f~ 102 (315)
T KOG0279|consen 85 GTLRLWDLATGES--------------------------------------------------------------TRRFV 102 (315)
T ss_pred ceEEEEEecCCcE--------------------------------------------------------------EEEEE
Confidence 9999999988753 45678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
||...|++++|++|+ .+++|+.|++|++|++.......... +.+.|+|+.|+|.. ..+|++++.|++|++||+++.
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 999999999999999 99999999999999987665555444 47999999999943 678999999999999999999
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
++. .+.+|.+.++.++++|||...++|+.||.+.+||++.++.++. ..+...|.+++|+| +..+|+.+.
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fsp-nrywL~~at 252 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSP-NRYWLCAAT 252 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecC-CceeEeecc
Confidence 887 5888999999999999999999999999999999999887653 23567899999999 666666555
Q ss_pred CCCcEEEEECCcceeeEEEe--eecc-----CCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGENVVGKFKAS--AFRV-----AGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~--~~~~-----~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
. ..|+|||........... ..+. .....+++|++||..|++|-.|+.|++|.+.
T Consensus 253 ~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 A-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred C-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 4 459999987643322211 1111 3345789999999999999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=296.44 Aligned_cols=264 Identities=23% Similarity=0.326 Sum_probs=231.7
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
|-+.+|..+.|++|++.||||+.+|.++||+..+...
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~------------------------------------------- 209 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL------------------------------------------- 209 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce-------------------------------------------
Confidence 4567899999999999999999999999999866532
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEe
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFN 437 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fs 437 (755)
+++|.||...|.++.|+|. + .|++++.||+|++|++.+...+..+ +|...|..++|+
T Consensus 210 -------------------~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 210 -------------------LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred -------------------eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 5678999999999999997 4 9999999999999999998888888 599999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
| +|++|++++.|.+-++||+.++..+ ...+|...|.+++|+|||..+++|+.|..-+|||+++++.+.. +
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~----L---- 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF----L---- 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE----e----
Confidence 9 9999999999999999999998766 6789999999999999999999999999999999999998764 2
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~ 595 (755)
..|.+.|.+|.|+| ++..|++|+.|++++|||++.....+.. ..|..-|+.++|+| .|.+|+|++.|++++||...
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~i--pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTI--PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceec--ccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 23778999999999 9999999999999999999887766665 78999999999998 78999999999999999998
Q ss_pred CCCcccCCCccccceeeeecCCeEEEEcCCC
Q 004410 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVG 626 (755)
Q Consensus 596 ~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g 626 (755)
+..+... .........++.++.++
T Consensus 419 ~~~~~ks-------LaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 419 TWSPLKS-------LAGHEGKVISLDISPDS 442 (459)
T ss_pred Ccccchh-------hcCCccceEEEEeccCC
Confidence 8774433 22333344555665554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=275.25 Aligned_cols=299 Identities=22% Similarity=0.323 Sum_probs=256.9
Q ss_pred cccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE
Q 004410 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg 302 (755)
....++-.+.+|...+..+.|+|+|..||+|+.|..|.+|+.....+.+. .+.+|.++|..+.|.+|++.|+++
T Consensus 35 ~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~------~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 35 SLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW------VLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred cccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee------eeccccceeEeeeeccCCCEEEEe
Confidence 34445566778888999999999999999999999999999665443333 367999999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.|.+|+.||+++|++. .
T Consensus 109 gtDk~v~~wD~~tG~~~--------------------------------------------------------------r 126 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRI--------------------------------------------------------------R 126 (338)
T ss_pred cCCceEEEEecccceee--------------------------------------------------------------e
Confidence 99999999999998754 3
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+++|..-|..+.-+.-| ++.+++.|++++|||+++..+++++.....++++.|.. .+..+++|+.|+.|++||++.
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeecccc
Confidence 456788888888865556 77789999999999999999999999899999999998 899999999999999999998
Q ss_pred CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.... .+.+|.+.|+.+..+|+|.++.+-+.|.++++||++-....+....-++++..........++|+| ++..+.+|
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ag 284 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAG 284 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccc
Confidence 8777 688999999999999999999999999999999998654433322224444444456677899999 99999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+.|..+++||.......++. .+|.+.|..+.|+|...+|.+++.|.+|++=.
T Consensus 285 s~dr~vyvwd~~~r~~lykl--pGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 285 SADRFVYVWDTTSRRILYKL--PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccceEEEeecccccEEEEc--CCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999998876666666 89999999999999999999999999998743
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=281.82 Aligned_cols=336 Identities=20% Similarity=0.232 Sum_probs=265.4
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+...|..-|.++.|+|||..+|+.+.||+|.+||-+++.+.-. + ..-.+|++.|.+|.|+||++.|+|++.|.+++
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~-l---~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE-L---EDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE-e---cCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 4566777889999999999999999999999999877654221 1 11248999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.+.+++.++.....- ..+.+.+.+.+ ..++..+..+.+..+++... .++..+.||..
T Consensus 261 IWdVs~~slv~t~~~~~~v----------~dqqvG~lWqk-----d~lItVSl~G~in~ln~~d~----~~~~~i~GHnK 321 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTV----------EDQQVGCLWQK-----DHLITVSLSGTINYLNPSDP----SVLKVISGHNK 321 (603)
T ss_pred EEEeeccceEEEeecCCch----------hceEEEEEEeC-----CeEEEEEcCcEEEEecccCC----Chhheeccccc
Confidence 9999999988887654430 11222222221 12233444555555555442 36888999999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---- 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---- 462 (755)
.|++|..++++ +|++|+.||.|.-|+..++..-+.. .|...|.+++-+. ...+++.+.|.+|++.++....
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~ 399 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKS 399 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecCCeEEEEecccCccccc
Confidence 99999999999 9999999999999999999888775 4999999999764 4668888899999999774211
Q ss_pred ----------------------------EEEec--------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 463 ----------------------------VVDYT--------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 463 ----------------------------~~~~~--------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
++-+. ...-...+++++|+++.+++|+.||.|+||.+....+..
T Consensus 400 ~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 400 EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 00011 122346789999999999999999999999999877643
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+. ....|...|++++++| ++.+|+++...+.+.+||..+........ .-|...|.+++|+|+.+++|||+.|
T Consensus 480 e~------~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 480 EA------KLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred ee------eeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEecccc
Confidence 32 2345778999999999 99999999999999999998866544332 3488999999999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
-+|.||+++.+.
T Consensus 552 t~Viiysv~kP~ 563 (603)
T KOG0318|consen 552 TNVIIYSVKKPA 563 (603)
T ss_pred ceEEEEEccChh
Confidence 999999998776
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=292.88 Aligned_cols=280 Identities=21% Similarity=0.350 Sum_probs=240.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
|..+.|.|+|+.|++|+..|.+.+|+... +.....+++|+.+|.+|.|+++|.+++||..+|.|++|+..-..
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh
Confidence 44589999999999999999999999532 22223478999999999999999999999999999999864321
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCCEEEEEE
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSW 396 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~ 396 (755)
+..+..| ...|.+++|
T Consensus 172 ---------------------------------------------------------------Vk~~~ahh~eaIRdlaf 188 (464)
T KOG0284|consen 172 ---------------------------------------------------------------VKIIQAHHAEAIRDLAF 188 (464)
T ss_pred ---------------------------------------------------------------hHHhhHhhhhhhheecc
Confidence 2223444 489999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
+|+. .+++++.||+|+|||....+....+ +|.-.|.+++|+| ...++++|+.|..|++||.+++.++ .+..|+..|
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 9987 9999999999999999888777776 5999999999999 8899999999999999999999988 788899999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
..+.|+|++++|++++.|..|++||+++.+.+.. ...|.+.++++.|+|-...++.+|+.||.|..|.....
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--------~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--------YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------hhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence 9999999999999999999999999996554432 34577899999999999999999999999999997732
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
... ......|...|++++|+|=|.+|++|+.|.++++|.-...
T Consensus 340 ~p~-~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 340 EPL-GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccc-cCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 222 2223679999999999999999999999999999986543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=289.35 Aligned_cols=351 Identities=22% Similarity=0.345 Sum_probs=268.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc-cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~-~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+..+.++.|||+|+++|.|.. ..+.||...+..+ ++.++...+++.+|...|.++.|+.|.++|++|+.|.+++||.+
T Consensus 96 k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 456888999999999998866 4799999876655 67788888999999999999999999999999999999999999
Q ss_pred cCCee--eeeeecCCCCCceeEEeeCCC--------CceeEEeec-------------------------Ccc-----ee
Q 004410 314 IEHER--LDGFDVQDTDPSCLYFTINHL--------SQLIPIDVD-------------------------KEK-----ID 353 (755)
Q Consensus 314 ~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~-------------------------~~~-----~~ 353 (755)
...+. ...+..+...+....|..+.. ..+..+.++ ..+ ..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87665 333444444444433332221 122222222 000 00
Q ss_pred ee---eeeeecCCceEEEeCC-----------cce---------------------------------------------
Q 004410 354 KT---KSLRKSSDLTCVVLPP-----------KVF--------------------------------------------- 374 (755)
Q Consensus 354 ~~---~~~~~~~~~~~~~~~~-----------~~~--------------------------------------------- 374 (755)
+. .....+....+..+++ ..+
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlV 334 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLV 334 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEE
Confidence 00 0000001111111110 000
Q ss_pred -ec-cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 375 -RL-LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 -~~-~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.. .+..+...++|...+.+++|+||| ++++|+.||.|+|||..++-|+.+|. |+..|+.++|+. .++.+++.+.|
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLD 413 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLD 413 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecC
Confidence 00 122344568999999999999999 99999999999999999999999995 999999999999 99999999999
Q ss_pred CcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 451 GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
|+||.||+...+........ ....+++..|.|..+++|+.|.- |++|++.+|+++.. ...|.++|.+++
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--------LsGHEgPVs~l~ 485 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--------LSGHEGPVSGLS 485 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--------hcCCCCcceeeE
Confidence 99999999988777544444 34678888888999999998864 99999999998753 456889999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+| .+..|++++.|.+|++||+-........ ..+...++.++|.|||+.|+++.-||.|.+||...+.
T Consensus 486 f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 486 FSP-DGSLLASGSWDKTVRIWDIFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred Ecc-ccCeEEeccccceEEEEEeeccCceeee--EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 999 8899999999999999998775555544 5677789999999999999999999999999987654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=305.29 Aligned_cols=250 Identities=29% Similarity=0.457 Sum_probs=220.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCc-------cccc-----------------ccccceeeecccccEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS-------RELS-----------------SLYTGQEFLAHEGSILTM 290 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~-------~~~~-----------------~~~~~~~l~~H~~~V~~l 290 (755)
...+.|+.|++|+++||.|..|..|++|.+.... ..+. .-...+++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3457889999999999999999999999987321 1111 112235688999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeC
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (755)
.|+|+.++|+++++|++||+|.+.+..+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~---------------------------------------------------- 485 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSC---------------------------------------------------- 485 (707)
T ss_pred eecccccceeeccCCcceeeeeccccee----------------------------------------------------
Confidence 9999999999999999999999987653
Q ss_pred CcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEe
Q 004410 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs 448 (755)
+..+.||..+|+++.|+|.| ++||++.|++.++|.....++++.| .|...|.|+.|+| +.+|+++||
T Consensus 486 ----------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGS 554 (707)
T KOG0263|consen 486 ----------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGS 554 (707)
T ss_pred ----------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCC
Confidence 23457999999999999999 9999999999999999999999999 4999999999999 999999999
Q ss_pred CCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 449 IDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.|.+||+||+.++..+ .+.+|..+|++++|+|+|++|++|+.||.|.+||+.++.++.. ...|.+.|+++.
T Consensus 555 sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~--------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ--------LKGHTGTIYSLS 626 (707)
T ss_pred CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh--------hhcccCceeEEE
Confidence 9999999999999888 5789999999999999999999999999999999999987754 334678999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceee
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGK 556 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~ 556 (755)
|+. ++..|++++.|++|++||.......
T Consensus 627 FS~-dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 627 FSR-DGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred Eec-CCCEEEecCCCCeEEEEEchhhccc
Confidence 999 9999999999999999997764433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=293.91 Aligned_cols=253 Identities=23% Similarity=0.453 Sum_probs=218.4
Q ss_pred ccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 275 YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
.....+.||+..|.++.|.| .+.+|++++.|+.|+||++....
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------------------------------------ 248 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------------------------------------ 248 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------------------------------------
Confidence 34567899999999999999 89999999999999999986521
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~ 432 (755)
..++++.+|..+|.+++|+++| .+++++.|++|++||+++|+++..+.....++
T Consensus 249 -------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~ 303 (503)
T KOG0282|consen 249 -------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT 303 (503)
T ss_pred -------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce
Confidence 2367789999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
|+.|+|.+.+.|++|+.|++|+.||++++++++ +..|-..|..+.|-++|+++++.+.|++++||+.+..-.+..
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~---- 379 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN---- 379 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh----
Confidence 999999555999999999999999999999885 556778999999999999999999999999999988765432
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-----eeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-----VGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
..........++..+| ++.+++.-+.|+.|.++.+... ...+.+ ....+.-..+.|||||.+|++|+.|
T Consensus 380 ---i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG--h~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 380 ---IADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG--HSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred ---hcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcc--eeccCceeeEEEcCCCCeEEeecCC
Confidence 1223445677899999 8999999999999999986542 233333 3345667889999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.+++||.++-+
T Consensus 454 G~v~~wdwkt~k 465 (503)
T KOG0282|consen 454 GKVNFWDWKTTK 465 (503)
T ss_pred ccEEEeechhhh
Confidence 999999987654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=262.63 Aligned_cols=291 Identities=19% Similarity=0.330 Sum_probs=238.2
Q ss_pred cccccceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEE
Q 004410 225 LKKLGAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSg 302 (755)
+..++.+.+|.+++..++|+|. |.+||+++.|..|+||+... .. .+.+...+ .+|+..|..++|+|.|+|||+|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~---s~~ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GD---SWTCKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CC---cEEEEEeccccchheeeeeeecCCCcEEEEe
Confidence 3455678888999999999999 99999999999999999874 11 12222222 3799999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.|.++.||.-..++. +.+.
T Consensus 80 SFD~t~~Iw~k~~~ef------------------------------------------------------------ecv~ 99 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEF------------------------------------------------------------ECVA 99 (312)
T ss_pred eccceEEEeecCCCce------------------------------------------------------------eEEe
Confidence 9999999997544321 2256
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~---~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
++.||...|.+++|+++| +|++++.|+.|-||.+..+ .|+.+++ |...|..+.|+| ...+|+++++|++|++|+
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEe
Confidence 788999999999999999 9999999999999998744 5666664 999999999999 999999999999999998
Q ss_pred cCCC---eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 458 VRRC---QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 458 l~~~---~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
-... .++ ++.+|...|.+++|++.|..|++++.|++++||-..+.- ...|...++.+.|. .
T Consensus 179 ~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------~~~~sr~~Y~v~W~---~ 243 (312)
T KOG0645|consen 179 DEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------SGMHSRALYDVPWD---N 243 (312)
T ss_pred ecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------chhcccceEeeeec---c
Confidence 7732 334 677888899999999999999999999999999866321 23356789999997 4
Q ss_pred CEEEEEECCCcEEEEECCcce--eeE---EEeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 004410 534 SKVIVTSADSLVRVLCGENVV--GKF---KASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~--~~~---~~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd~~ 595 (755)
..|++++.|+.|+++...... ..+ ......|...|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 789999999999999855421 111 1112457789999999995 7789999999999999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=260.41 Aligned_cols=277 Identities=21% Similarity=0.318 Sum_probs=229.3
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.++.+|++.|+.++..+. .+.|++++.|.++.+|++.....
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------------------------------------- 50 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------------------------------------- 50 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------------------------------
Confidence 468899999999999886 57899999999999999865421
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
..+.++..+.||...|.++..++++ +.++++.|+++++||+.+++..+.| +|...|.++
T Consensus 51 -------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv 111 (315)
T KOG0279|consen 51 -------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV 111 (315)
T ss_pred -------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE
Confidence 1145678899999999999999999 9999999999999999999888888 699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC--CcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI--REIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~--~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
+|+| +.+.+++|+.|.+|++|++........... .+.|+|++|+|+ ..+|+.++.|++|++||+++.++...
T Consensus 112 a~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--- 187 (315)
T KOG0279|consen 112 AFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--- 187 (315)
T ss_pred EecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---
Confidence 9999 999999999999999999998877765544 789999999997 78999999999999999999887653
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|.+.++.++++| |+.+.++|+.||.+.+||+...+..+. ..+...|.+++|+|+. |.+++..+..|+
T Consensus 188 -----~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lys---l~a~~~v~sl~fspnr-ywL~~at~~sIk 257 (315)
T KOG0279|consen 188 -----FIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYS---LEAFDIVNSLCFSPNR-YWLCAATATSIK 257 (315)
T ss_pred -----cccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEe---ccCCCeEeeEEecCCc-eeEeeccCCceE
Confidence 344788999999999 999999999999999999998777544 5688899999999985 445555566799
Q ss_pred EEEcCCCCcccCCCccccceeeeecCCeEEEEcCC
Q 004410 591 IWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWV 625 (755)
Q Consensus 591 iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~ 625 (755)
|||+.++...............-...+.++..+|+
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 99999987443322222222112223455666665
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=285.66 Aligned_cols=283 Identities=24% Similarity=0.380 Sum_probs=240.4
Q ss_pred ccCcceeecCCCCeeEEeeC-CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
..+..++|+..|.+||.|+. -|.+.||++......+. .++|...|.+++++|||+++|||++||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------ccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 45667999999999999875 58999999876544332 57999999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++-+ +.+|..|++.|+.+
T Consensus 381 SgfC--------------------------------------------------------------~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 381 SGFC--------------------------------------------------------------FVTFTEHTSGVTAV 398 (893)
T ss_pred CceE--------------------------------------------------------------EEEeccCCCceEEE
Confidence 7754 45677899999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcCCCeEEE-eccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVD-YTDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg-~V~iwdl~~~~~~~-~~~~ 469 (755)
+|+..+ .+++++.||+|+.||+...++.++|... -...|++..| .|.+++.|+.|. .|.||++++|+++. +.+|
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 999999 9999999999999999999999999744 4467888888 899999999887 59999999999994 7899
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
.++|.+++|+|+|..|++|+.|.+|++||+-...- ..++. ..+.++.+.|.| ++..|++++-||.|.+|
T Consensus 478 EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---------i~sdvl~vsfrP-dG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 478 EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE---------IRSDVLAVSFRP-DGKELAVATLDGQITFF 547 (893)
T ss_pred CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe---------eccceeEEEEcC-CCCeEEEEEecceEEEE
Confidence 99999999999999999999999999999875422 22211 346899999999 99999999999999999
Q ss_pred ECCcceeeEE------------------EeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 549 CGENVVGKFK------------------ASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~------------------~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|.....+... ..........+.+++++||.+|++|+....|+||++.++-
T Consensus 548 d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 548 DIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 9776543311 1111233578999999999999999999999999999876
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=268.57 Aligned_cols=285 Identities=19% Similarity=0.322 Sum_probs=254.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|...+..+.|+|+-.++++++.|++|++||+.++.. ...++||.+.|..|+|+..|++||+++.|=.++
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 3556777788899999999999999999999999876553 345899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+||..+.. ..+..+.+|..
T Consensus 176 LWd~~~~~-------------------------------------------------------------~c~ks~~gh~h 194 (406)
T KOG0295|consen 176 LWDFDTFF-------------------------------------------------------------RCIKSLIGHEH 194 (406)
T ss_pred heeHHHHH-------------------------------------------------------------HHHHHhcCccc
Confidence 99986531 12445678999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
.|.+++|-|.| ++++++.|.+|+.|++.++.|+++|. |...|..++.+. |+.++++++.|.+|++|-+.++++. .+
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhh
Confidence 99999999999 99999999999999999999999995 999999999998 9999999999999999999999776 57
Q ss_pred ccCCcceEEEEEccC---------------CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 467 TDIREIVSAVCYCPD---------------GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 467 ~~~~~~V~~v~~spd---------------g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
..|..+|.+++|.|. ++++.+++.|++|++||+.++.++.+ ...|...|.+++|+|
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t--------L~ghdnwVr~~af~p- 344 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT--------LVGHDNWVRGVAFSP- 344 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------EecccceeeeeEEcC-
Confidence 789999999999873 25899999999999999999998865 334788999999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.|++|+++..|+++++||+.+..+.... ..|..-++++.|+.+-.|++||+-|..+++|.-
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~--~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTL--EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeecc--CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999998777766 578889999999999999999999999999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=263.13 Aligned_cols=330 Identities=17% Similarity=0.184 Sum_probs=273.7
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
...+.++..|.+.+.+++++|+.+++|||+.|..-.||+...+.. .-++.+|++.|+++.|+.||.|||||+.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-------~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-------AGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-------eeEecCCCCceEEEEEccCceEEEecCC
Confidence 345567888999999999999999999999999999999877652 2357899999999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+|.|+||+..++.....+........-+.|.+.. ..++.++.++.+.+|..... .....+
T Consensus 127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a----------------~illAG~~DGsvWmw~ip~~----~~~kv~ 186 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA----------------HILLAGSTDGSVWMWQIPSQ----ALCKVM 186 (399)
T ss_pred CccEEEEEcccCceEEEeecccCceEEEEecccc----------------cEEEeecCCCcEEEEECCCc----ceeeEe
Confidence 9999999999998777765333333333333321 23456777888887765432 446778
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.||..++++=.|.|+| +++++..||+|++||+.+++++..+. .....+++.++. .+..++.|+.++.+++-+..++
T Consensus 187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccc
Confidence 9999999999999999 99999999999999999999998885 455678999988 8999999999999999999999
Q ss_pred eEEEecc---------CCcc---eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 462 QVVDYTD---------IREI---VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 462 ~~~~~~~---------~~~~---V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
+++.... +... |..+.++..-.+.|+|+.||+|.|||+...++.. .-.|...|+.+.|.
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWL 336 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEc
Confidence 9885333 2233 4444555566788999999999999999877654 22356779999998
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+ ..+|++++.+|.|+.||.++...++.. .+|...|.+++++|+.++++|+|.|+..+||++.
T Consensus 337 ~--t~~l~t~c~~g~v~~wDaRtG~l~~~y--~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N--TDYLLTACANGKVRQWDARTGQLKFTY--TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C--cchheeeccCceEEeeeccccceEEEE--ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7 578999999999999999998888777 8999999999999999999999999999999875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=267.00 Aligned_cols=297 Identities=19% Similarity=0.336 Sum_probs=252.9
Q ss_pred hccccccc---ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC
Q 004410 220 VKRGWLKK---LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG 296 (755)
Q Consensus 220 ~~~~w~~~---~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg 296 (755)
.++.|..+ .+.+.+|.+.|.++++.|.+.++++|+.|++|+|||+.++... .++.||-..|..+++|+--
T Consensus 133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-------ltltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-------LTLTGHIETVRGVAVSKRH 205 (460)
T ss_pred CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-------EeecchhheeeeeeecccC
Confidence 45667554 4568899999999999999999999999999999998765533 3588999999999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
.||++++.|+.|+.||++..+.
T Consensus 206 pYlFs~gedk~VKCwDLe~nkv---------------------------------------------------------- 227 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKV---------------------------------------------------------- 227 (460)
T ss_pred ceEEEecCCCeeEEEechhhhh----------------------------------------------------------
Confidence 9999999999999999977653
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.||.+.|.+|+.+|.- .|++++.|.++||||+++...+.++. |...|..+.+.| .+..+++|+.|++|+
T Consensus 228 ----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 228 ----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVR 302 (460)
T ss_pred ----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEE
Confidence 45667999999999999987 99999999999999999999999985 999999999999 677899999999999
Q ss_pred EEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+||++.++.. .+..|+..|.+++.+|....+|+++.| .|+-|++..+..... ...|...|+.+..+. .
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D 371 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--D 371 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--C
Confidence 9999988766 788899999999999999999998866 689999998876543 334667888888874 4
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEe------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKAS------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..+++|+..|.+.+||..+...-.... .......|.+.+|...|..|++|..|.+|++|.-+..
T Consensus 372 ~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 789999999999999987643322221 1123457899999999999999999999999986543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=283.45 Aligned_cols=359 Identities=21% Similarity=0.323 Sum_probs=267.6
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEEcCCCcEEEE
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGEDGTVRVW 311 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSgs~Dg~I~vW 311 (755)
|..++-.++|+|.+.+||+|+.|++|+|||+.. .++.+.|+||.+.|.++.|+|+-. .|++|..|++|++|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vw 176 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKN-------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVW 176 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeC-------CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEE
Confidence 455666699999999999999999999999654 456778999999999999999754 58999999999999
Q ss_pred EccCCee-eeeeecCCCCCceeEEeeCCCCce--------eEEeecC--------------------c--ceeeeeeeee
Q 004410 312 KVIEHER-LDGFDVQDTDPSCLYFTINHLSQL--------IPIDVDK--------------------E--KIDKTKSLRK 360 (755)
Q Consensus 312 dv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~--------------------~--~~~~~~~~~~ 360 (755)
|+.+... +..+..+...+..+.+..+....+ ..++... . .......++.
T Consensus 177 nl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 177 NLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred EcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9985543 444444544444444444322111 1110000 0 0001122222
Q ss_pred cCCceEEEeCCc--------------------------------------------------------------------
Q 004410 361 SSDLTCVVLPPK-------------------------------------------------------------------- 372 (755)
Q Consensus 361 ~~~~~~~~~~~~-------------------------------------------------------------------- 372 (755)
+.++....|+..
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 222222222211
Q ss_pred -------------ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCcEEE
Q 004410 373 -------------VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTS 433 (755)
Q Consensus 373 -------------~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-----~h~~~V~~ 433 (755)
.+.........+.||...|.++....+| .|++++.|+++++|.++.+...... .|...|.+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 0111111123467999999999966677 9999999999999988544433222 49999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeE----E------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQV----V------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~----~------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
++++.....+|+++|.|+++++|+++..+. + ....|...|++++++|+.++||+|+.|.+.+||++..+.
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 999886778999999999999999987221 1 234688899999999999999999999999999999666
Q ss_pred EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
+... ...|...|.++.|+| ..+.++++|.|.+|+||.+.+..+.-.. .+|...|..+.|-.+|+.|+++
T Consensus 497 l~~v--------LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~--eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 497 LLGV--------LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTF--EGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred EEEE--------eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeee--cCccceeEeeeeeeCCcEEEec
Confidence 5542 445778999999999 8899999999999999999987777666 7899999999999999999999
Q ss_pred eCCCcEEEEEcCCCCccc---CCCccccce
Q 004410 584 SEDSNIYIWNYSNQDKSS---SRSKSIWSC 610 (755)
Q Consensus 584 s~Dg~I~iWd~~~~~~~~---~~~~~~~~~ 610 (755)
+.||-|+||++++.+.+. .+...+|..
T Consensus 566 ~adGliKlWnikt~eC~~tlD~H~DrvWaL 595 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNECEMTLDAHNDRVWAL 595 (775)
T ss_pred cCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence 999999999999998544 345566654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=274.35 Aligned_cols=290 Identities=20% Similarity=0.309 Sum_probs=243.7
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccc-cccce--eeec----ccccEEEEEEecCCCEEEEEcCC
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSS-LYTGQ--EFLA----HEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~-~~~~~--~l~~----H~~~V~~l~fspdg~~LaSgs~D 305 (755)
|...|.+.+|+|-.. +|++|+.+-..++|++......... +...+ .+-+ ....|++++|+.+|.+||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 677788899999988 9999999999999997641111111 00000 0111 23579999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.++||+.... .+.++.
T Consensus 257 G~~riw~~~G~---------------------------------------------------------------l~~tl~ 273 (524)
T KOG0273|consen 257 GEARIWNKDGN---------------------------------------------------------------LISTLG 273 (524)
T ss_pred cEEEEEecCch---------------------------------------------------------------hhhhhh
Confidence 99999996432 244567
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.|.++|.+|.|+..| +|++++.|+++.+||..++.....|. |..+-..+.|- +..-|++++.|+.|+|+-+.....
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCc
Confidence 799999999999999 99999999999999999999999987 66665788886 577899999999999999987665
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--------CCC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--------DPS 534 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--------d~~ 534 (755)
+ ++.+|++.|.++.|+|.|.+|++++.|++++||.+........ ...|...|+.+.|+|. .+.
T Consensus 352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~--------l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD--------LQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh--------hhhhccceeeEeecCCCCccCCCcCCc
Confidence 5 7888999999999999999999999999999999877655432 3457788999999885 346
Q ss_pred EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 535 KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+++++.|++|++||.....+.+.. ..|..+|++++|+|+|+||++|+.||.|.||++.+++
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f--~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTL--MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEee--ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 8999999999999999998888876 7899999999999999999999999999999999887
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=268.82 Aligned_cols=284 Identities=27% Similarity=0.465 Sum_probs=241.7
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+.+|.+.+.+++|+|++++|++++.+|.|++|+..... ....+.+|...|..+.|+|++++|++++.||.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 4566788899999999999999999999999999987543 234567899999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++. +..+..|.
T Consensus 76 ~i~~~~~~~~--------------------------------------------------------------~~~~~~~~ 93 (289)
T cd00200 76 RLWDLETGEC--------------------------------------------------------------VRTLTGHT 93 (289)
T ss_pred EEEEcCcccc--------------------------------------------------------------eEEEeccC
Confidence 9999876432 23445688
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..|.++.|++++ .+++++.|+.|++||+.+++....+. |...|.+++|+| ++.++++++.|+.|++||+++++.+ .
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccccee
Confidence 899999999998 77777779999999999888888886 888999999999 7888888888999999999977665 4
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..+...+.+++|+|+++.+++++.+|.|++||+..++..... ..+...+.++.|+| ++.++++++.|+.|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~-~~~~~~~~~~~~~i 243 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL--------RGHENGVNSVAFSP-DGYLLASGSEDGTI 243 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch--------hhcCCceEEEEEcC-CCcEEEEEcCCCcE
Confidence 5567779999999999999999999999999999987665432 23556899999999 67888888889999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++|+.......... ..|...+.+++|++++++|++++.||.|++|+
T Consensus 244 ~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 244 RVWDLRTGECVQTL--SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCceeEEEc--cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99998865444443 46778999999999999999999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=271.94 Aligned_cols=299 Identities=17% Similarity=0.237 Sum_probs=250.2
Q ss_pred ccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
..+..+.+..|.+.|..+.||++|++||+++.|.+..||++..... +...+++.+|..+|..+.||||.+||++|+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 3445567788999999999999999999999999999999764433 456678999999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|..+++||+.+|.....+.
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~------------------------------------------------------------ 308 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYP------------------------------------------------------------ 308 (519)
T ss_pred chHheeeccCCcchhhhhcc------------------------------------------------------------
Confidence 99999999999987543322
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+|...+.+++|.||| .+++|+.|++|..||+.... +..+. ....|.+++..+ ||.++++.+.|..|++++..+
T Consensus 309 -~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 -SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh
Confidence 2345778999999999 99999999999999987554 33332 346699999999 999999999999999999998
Q ss_pred CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
...+.......+|++++.+.||+++++.-.+..+++||+..++++.... |++ .+.-|..-+|.-.+..++++|+
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~----Ghk--q~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF----GHK--QGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh----ccc--ccceEEEeccCCCCcceEEecC
Confidence 7777677778899999999999999999999999999999887765432 222 2345666677766778999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.|+.|+||+.......... .+|...|++++|+|.. .++|+||+||+|+||.....
T Consensus 460 ED~kvyIWhr~sgkll~~L--sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVL--SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceEEEEEccCCceeEee--cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999998876655555 8999999999999965 56899999999999987644
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=267.94 Aligned_cols=277 Identities=20% Similarity=0.346 Sum_probs=242.1
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+++++|+.+|..||+|..+|.++||+..... ..+|..|+++|.+++|+.+|.||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 457889999999999999999999999965432 235677999999999999999999999999999999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+..... +.-|..+-.++.
T Consensus 308 g~~~q~--------------------------------------------------------------f~~~s~~~lDVd 325 (524)
T KOG0273|consen 308 GTVKQQ--------------------------------------------------------------FEFHSAPALDVD 325 (524)
T ss_pred ceEEEe--------------------------------------------------------------eeeccCCccceE
Confidence 875433 334666667899
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
|-.+..+++++.|+.|+|+.+....++.++ .|.+.|.+|.|+| .+.+|++++.|++++||.+...... .+..|...|
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 998889999999999999999999999888 5999999999999 9999999999999999998776666 688899999
Q ss_pred EEEEEccCC---------CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 474 SAVCYCPDG---------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 474 ~~v~~spdg---------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
..+.|+|+| ..+++++.|++|++||+..+..+.. ...|..+|++++|+| +++++++|+.||.
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--------f~kH~~pVysvafS~-~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--------LMKHQEPVYSVAFSP-NGRYLASGSLDGC 475 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--------eccCCCceEEEEecC-CCcEEEecCCCCe
Confidence 999999965 4689999999999999999988764 224788999999999 9999999999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|.+|+..+...... ....+.|..++|+.+|.+|..+-.|+.+.+-|+.
T Consensus 476 V~iws~~~~~l~~s---~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKS---YQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEe---ecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999887543332 4456779999999999999999999999999875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=251.37 Aligned_cols=270 Identities=19% Similarity=0.311 Sum_probs=226.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
++|+||.+.|.+|.|++|.++|++++.||.+.|||..+....+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h------------------------------------- 91 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH------------------------------------- 91 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-------------------------------------
Confidence 5689999999999999999999999999999999987665332
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------eEEEEE-ecCC
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID------RCLRVF-SHNN 429 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~------~~~~~~-~h~~ 429 (755)
.+.-....|..++|+|++ ++++|+.|+...||++.+. +..+.+ .|.+
T Consensus 92 -------------------------aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg 146 (343)
T KOG0286|consen 92 -------------------------AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG 146 (343)
T ss_pred -------------------------EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc
Confidence 223356789999999999 9999999999999999855 233344 5999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
++.|+.|.+ +..|++++.|.+..+||+++++.+ .+.+|.+.|.++.++| +++.+++|+-|+..++||++.+...+.
T Consensus 147 ylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 147 YLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred eeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 999999975 678999999999999999999887 6889999999999999 999999999999999999999988775
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
...|...|+.+.|.| ++.-+++|+.|++.++||++...............+|++++||..|++|++|..|.
T Consensus 225 --------F~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 225 --------FEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred --------ecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 334788999999999 99999999999999999998755555544355667899999999999999999999
Q ss_pred cEEEEEcCCCCcccCCCccc--cceeeeecCCeEE
Q 004410 588 NIYIWNYSNQDKSSSRSKSI--WSCESFLSHNVSV 620 (755)
Q Consensus 588 ~I~iWd~~~~~~~~~~~~~~--~~~~~f~~~~~~v 620 (755)
++.+||.-.++......... .+|......+.++
T Consensus 296 ~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 296 TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred ceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 99999998887433222221 2555555555555
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=293.58 Aligned_cols=293 Identities=23% Similarity=0.372 Sum_probs=244.0
Q ss_pred ccceeee-eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARI-IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~-~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
...+..+ ...+.++.|+|+|+++++++.++.+++|+...... ...+++.+|...|.+++|+||+++|++++.|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCc
Confidence 3444443 45577799999999999999999999999844332 23355689999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.... ..+.++.+
T Consensus 226 tiriwd~~~~~-------------------------------------------------------------~~~~~l~g 244 (456)
T KOG0266|consen 226 TLRIWDLKDDG-------------------------------------------------------------RNLKTLKG 244 (456)
T ss_pred eEEEeeccCCC-------------------------------------------------------------eEEEEecC
Confidence 99999983331 12567789
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
|...|++++|+|++ .+++|+.|++|+|||+++++++..+. |...|++++|++ ++++|++++.|+.|+|||+.++.
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee
Confidence 99999999999999 99999999999999999999999995 999999999999 99999999999999999999998
Q ss_pred EE-EeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VV-DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~-~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
++ ....+.. .++.++|+|++++|++++.|+.+++||+..+........+... ...+.....++ ++.+++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~i~sg 397 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-----VRCIFSPTLST-GGKLIYSG 397 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-----ceeEecccccC-CCCeEEEE
Confidence 33 3444433 5899999999999999999999999999988876543321111 12444555566 89999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPS--EDSNIYIWNYS 595 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs--~Dg~I~iWd~~ 595 (755)
+.|+.|.+|+..+....... .+| ...+..+.+++...++++++ .|+.|++|..+
T Consensus 398 ~~d~~v~~~~~~s~~~~~~l--~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSGGILQRL--EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eCCceEEEEeCCccchhhhh--cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999885555444 567 88899999999999999998 78999999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-30 Score=264.50 Aligned_cols=363 Identities=19% Similarity=0.287 Sum_probs=273.2
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC--CcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D--g~I 308 (755)
+..|...++-+.++|.|.++|+|...|+||||+.......+. .+++.-.++|..|+|+.|++.|+..++. +..
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK-----nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK-----NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee-----eeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 444555556688999999999999999999999765443333 4567778999999999999999887753 334
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+++-+.+|..+.++..+......+.|.+.. .+....++.|..+.++.-..|+. ..++..|.
T Consensus 130 ~~F~~DSG~SvGei~GhSr~ins~~~KpsR---------------PfRi~T~sdDn~v~ffeGPPFKF----k~s~r~Hs 190 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEITGHSRRINSVDFKPSR---------------PFRIATGSDDNTVAFFEGPPFKF----KSSFREHS 190 (603)
T ss_pred EEEEecCCCccceeeccceeEeeeeccCCC---------------ceEEEeccCCCeEEEeeCCCeee----eecccccc
Confidence 444445677677777665555555444433 23445667777777776554433 34667899
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.-|.|+.|+||| ++++++.||+|.+||-.+++.+..+. |.+.|.++.|+| |...|++++.|.+++|||+.+.++
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccce
Confidence 999999999999 99999999999999999999999985 999999999999 999999999999999999976432
Q ss_pred E--------------------------------------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 464 V--------------------------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 464 ~--------------------------------------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
+ ...+|...|+++..+||+++|++|+.||.|.-||.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 2 12457788999999999999999999999999998
Q ss_pred CCCeEeee------ee-----------------------EE---------------------------------------
Q 004410 500 KDNQLYQQ------NQ-----------------------IC--------------------------------------- 511 (755)
Q Consensus 500 ~~~~~~~~------~~-----------------------~~--------------------------------------- 511 (755)
.++..-.. .+ +.
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 65432100 00 00
Q ss_pred -eccccc----CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 512 -LQGKKK----LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 512 -~~~~~~----~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
++.... ...-...+++++| ++..+++|+.|+.|+||.+......-......|.+.|++++||||+.|||++...
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred EEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence 000000 0112356788899 9999999999999999998875544444457899999999999999999999999
Q ss_pred CcEEEEEcCCCCcccCCCccccceeeeecCCeEEEEcCCCC
Q 004410 587 SNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 587 g~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~ 627 (755)
+.|.+||+.+.+. ....|. | .......++|++.
T Consensus 509 rkvv~yd~~s~~~----~~~~w~---F-HtakI~~~aWsP~ 541 (603)
T KOG0318|consen 509 RKVVLYDVASREV----KTNRWA---F-HTAKINCVAWSPN 541 (603)
T ss_pred CcEEEEEcccCce----ecceee---e-eeeeEEEEEeCCC
Confidence 9999999998763 111122 1 2244557888654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=279.47 Aligned_cols=335 Identities=21% Similarity=0.260 Sum_probs=268.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeec-ccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+.+++.++.||+..|+++...+.+++|++..+. ..+.+++ |+++|..|+|+|.|.+||+|+.|+.|+|||+
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-------~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi 134 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-------LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDI 134 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccch-------HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEe
Confidence 3567789999999999999999999999987652 3345666 9999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..+.+.+.+..++..+..+.|.++... .....+..++.+.+|+...... .++.+..|.+.|++
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~--------------~lL~sg~~D~~v~vwnl~~~~t---cl~~~~~H~S~vts 197 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNR--------------WLLASGATDGTVRVWNLNDKRT---CLHTMILHKSAVTS 197 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccch--------------hheeecCCCceEEEEEcccCch---HHHHHHhhhhheee
Confidence 999999999998888888888776543 2234566777788887654322 57788899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE-------------------------------------------------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLR------------------------------------------------- 423 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~------------------------------------------------- 423 (755)
+++++++ .+++++.|+.|.|||+.+.++++
T Consensus 198 L~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~ 277 (775)
T KOG0319|consen 198 LAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR 277 (775)
T ss_pred eeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhc
Confidence 9999999 89999999999999874221100
Q ss_pred ------------------------------------------------------------------------E-------
Q 004410 424 ------------------------------------------------------------------------V------- 424 (755)
Q Consensus 424 ------------------------------------------------------------------------~------- 424 (755)
.
T Consensus 278 ~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~ 357 (775)
T KOG0319|consen 278 QSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY 357 (775)
T ss_pred cCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCc
Confidence 0
Q ss_pred ----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccCC-CeEEEEeCCCcE
Q 004410 425 ----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDG-KGGIVGTMTGNC 494 (755)
Q Consensus 425 ----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spdg-~~la~gs~dg~I 494 (755)
-+|...|.++.... ++.+|++|+.|.++++|.+..+... ...+|...|.+++++..+ .+|++++.|+++
T Consensus 358 c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred eEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 01445555555333 5679999999999999988544322 467899999999997755 678999999999
Q ss_pred EEEECCCCeEeeeeeEE--ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 495 RFYDIKDNQLYQQNQIC--LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~--~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
++|++...+.... ++. .......|.+.|++++++| +..++++|+.|.+.+||++.+ ....+.+.+|...|.++.
T Consensus 437 K~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~--~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 437 KLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred EEecCCCcccccc-cceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC--ceEEEEeeCCccceEEEE
Confidence 9999987322211 121 2223457899999999999 889999999999999999995 444555589999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++..+.++|+|.|++|+||.+.+..
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred eccccceeEeccCCceEEEEEeccce
Confidence 99999999999999999999999876
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=303.72 Aligned_cols=297 Identities=14% Similarity=0.161 Sum_probs=233.4
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccc-cccceeeecccccEEEEEEec-CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I 308 (755)
+..|.+.+.+++|+|+|++||+|+.|+.|+||+.......... ......+. +...|.+++|+| ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3446677888999999999999999999999997542111000 01112233 456899999987 57899999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++. +..+.+|.
T Consensus 558 ~lWd~~~~~~--------------------------------------------------------------~~~~~~H~ 575 (793)
T PLN00181 558 QVWDVARSQL--------------------------------------------------------------VTEMKEHE 575 (793)
T ss_pred EEEECCCCeE--------------------------------------------------------------EEEecCCC
Confidence 9999876643 34456899
Q ss_pred CCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--EE
Q 004410 389 SEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VV 464 (755)
Q Consensus 389 ~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~ 464 (755)
..|++++|+| ++ +|++++.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.. ..
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~ 655 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 9999999997 55 89999999999999999999998888778899999976589999999999999999998765 33
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+..|...|.++.|. ++.+|++++.|++|++||++......... .......|...++.+.|+| ++.+|++|+.|+.
T Consensus 656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~--~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~ 731 (793)
T PLN00181 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET--PLHSFMGHTNVKNFVGLSV-SDGYIATGSETNE 731 (793)
T ss_pred EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc--ceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCE
Confidence 567888999999997 78899999999999999998542100000 0001234667889999999 7889999999999
Q ss_pred EEEEECCcceeeEEE-----------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 545 VRVLCGENVVGKFKA-----------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 545 I~iwd~~~~~~~~~~-----------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
|++|+.......... ....+...|.+++|++++.+|++|+.||.|+||++
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999997643222111 01234457999999999999999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=250.68 Aligned_cols=257 Identities=24% Similarity=0.427 Sum_probs=218.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
..+.+|++.|..++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3478999999999999999999999999999999974332
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
+....+.+|.+.|..+.|.+++ .|++++.|++|+.||++++++++.++ |..-|+.+.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 1134467999999999999999 99999999999999999999999985 999999998
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
-+.....++.+|+.|+++++||++++..++....+..+++++|..++..+++|+-|+.|++||++.+.....
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------- 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------- 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE--------
Confidence 665455678899999999999999999998888889999999999999999999999999999998877653
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee------eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
...|...|+.+..+| ++.++++-+.|.++++||...... .+.+...........++|+|++.++.+|+.|..+
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 344678999999999 999999999999999999875432 2333222223345678999999999999999999
Q ss_pred EEEEcCCCCcccCCC
Q 004410 590 YIWNYSNQDKSSSRS 604 (755)
Q Consensus 590 ~iWd~~~~~~~~~~~ 604 (755)
++||.....-....+
T Consensus 291 yvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLP 305 (338)
T ss_pred EEeecccccEEEEcC
Confidence 999988765333333
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=283.67 Aligned_cols=272 Identities=25% Similarity=0.367 Sum_probs=221.7
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...++|..|++|+.+||.|-.|..|++|.+...+ +..++....-. . .+ ..+.+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~-------~-------~d------------~~sad 430 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLS-------N-------ID------------TESAD 430 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhc-------c-------cc------------ccccc
Confidence 3569999999999999999999999999987542 11111100000 0 00 00000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~ 441 (755)
......+. .......++.||.++|..+.|+|+. +|++++.|++||+|.+.+..++..+. |..+|.+++|+| .|
T Consensus 431 ~~~~~~D~----~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~G 505 (707)
T KOG0263|consen 431 VDVDMLDD----DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RG 505 (707)
T ss_pred hhhhhccc----cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-Cc
Confidence 00000000 0112245688999999999999999 99999999999999999999998884 999999999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
-||++++.|++-++|........ -+.+|...|.|+.|+|+..++++|+.|.+|++||+.+|..+.. ...|.
T Consensus 506 yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------F~GH~ 577 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------FTGHK 577 (707)
T ss_pred eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------ecCCC
Confidence 99999999999999999887666 4778899999999999999999999999999999999988764 24478
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|++++|+| ++.+|++|+.|+.|.+||+.+....... .+|.+.|.++.|+.||..||+|+.|++|++||+....
T Consensus 578 ~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 578 GPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhh--hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999 9999999999999999999886555444 7789999999999999999999999999999997654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=263.73 Aligned_cols=266 Identities=23% Similarity=0.457 Sum_probs=224.3
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
+.-|+..+++|..|.+|+|||.+. +.+...+.||+|.|.|+.| |.+.|++|+.|.+|+|||+++++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~---- 269 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP---- 269 (499)
T ss_pred EEecchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch----
Confidence 345677889999999999999653 3455678999999999999 567999999999999999998864
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeE
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L 402 (755)
+.++.+|...|..+.|+. |++
T Consensus 270 ----------------------------------------------------------l~tlihHceaVLhlrf~n-g~m 290 (499)
T KOG0281|consen 270 ----------------------------------------------------------LNTLIHHCEAVLHLRFSN-GYM 290 (499)
T ss_pred ----------------------------------------------------------hhHHhhhcceeEEEEEeC-CEE
Confidence 445668999999999984 599
Q ss_pred EEEeCCCcEEEEeCCCCeEEE---EE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 403 LSSSADKTVRLWQVGIDRCLR---VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s~~~~~---~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
++++.|.+|.+||+....-+. ++ +|...|+.+.|+ .+++++++.|.+|++|++.+++.+ .+.+|+..|-|+.
T Consensus 291 vtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred EEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehh
Confidence 999999999999998665322 22 599999999995 469999999999999999999998 5788999998888
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee-
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK- 556 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~- 556 (755)
| .|+++++|+.|.+|++||+..|.++.. ...|..-|.++.| +.+.+++|+.||+|+|||+......
T Consensus 368 Y--r~rlvVSGSSDntIRlwdi~~G~cLRv--------LeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 368 Y--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred c--cCeEEEecCCCceEEEEeccccHHHHH--------HhchHHhhhheee---cCceeeeccccceEEEEecccccCCc
Confidence 7 789999999999999999999988653 3346678999999 5589999999999999998765443
Q ss_pred ------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 557 ------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 557 ------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.......|.+.|..+.| |...|++++.|.+|.|||+.++-
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 22233568889999998 56789999999999999998876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=265.79 Aligned_cols=360 Identities=19% Similarity=0.293 Sum_probs=264.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
.+-.+.+|..+|+++.|+..|..||+|+.|+.|.|||+-..... -.+.||++.|+.+-|..+.++|++.+.|+
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-------~rL~GHkd~iT~~~F~~~~~~lvS~sKDs 171 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-------FRLRGHKDSITQALFLNGDSFLVSVSKDS 171 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-------EEeecchHHHhHHhccCCCeEEEEeccCc
Confidence 34467889999999999999999999999999999997643322 24889999999999998889999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEee------CCCCceeEEee--cCcc---------------------------
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTI------NHLSQLIPIDV--DKEK--------------------------- 351 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~--------------------------- 351 (755)
.|++||+.+..+..+.-.+......+.+.. .....+..+.. ..+.
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 999999999887766554444333332221 00111111100 0000
Q ss_pred -----------------------------------------------------------------------eeeeeeeee
Q 004410 352 -----------------------------------------------------------------------IDKTKSLRK 360 (755)
Q Consensus 352 -----------------------------------------------------------------------~~~~~~~~~ 360 (755)
+........
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 000000000
Q ss_pred cCC-ceEEEeCCcc---eecc--Cc--------cceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe
Q 004410 361 SSD-LTCVVLPPKV---FRLL--EK--------PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426 (755)
Q Consensus 361 ~~~-~~~~~~~~~~---~~~~--~~--------~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~ 426 (755)
... ..++.+.... +.+. .+ ...++.||...|..++++.+..++..+..+.|++|+..+.+|++++.
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence 000 0111111000 0000 00 11456799999999999999966666677899999999999999996
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.. ++.+..|.| .++++++|...|.+.+||+.....+ ....|.+.|..++.+||++.+++|+.|.+|++||..--.-.
T Consensus 412 ~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 412 CG-YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred cc-cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 55 899999999 9999999999999999999998877 56689999999999999999999999999999997421110
Q ss_pred ee---eeEEecc-cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 506 QQ---NQICLQG-KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 506 ~~---~~~~~~~-~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
.. ..+.+.. ..-.-...|.++.++| |+++|+++--|++|+||-+.+.... ..+.+|.-+|.++.+|||++.|+
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--lsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--LSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--eeecccccceeEEeccCCcCeEE
Confidence 00 0011111 0111246799999999 9999999999999999998885444 44499999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
|||.|.+|+||-++=|.
T Consensus 567 TgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGD 583 (888)
T ss_pred eccCCCceEEeccccch
Confidence 99999999999998887
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=276.12 Aligned_cols=288 Identities=18% Similarity=0.319 Sum_probs=244.5
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
+....++..++|+|...+++++-..|.|.+||++-+. +...|..|+|+|..+.|+|++.++++||.|-.|+||
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 3345677889999999999999999999999987543 335688999999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
+..+.++ +.++.||...|
T Consensus 79 nYk~rrc--------------------------------------------------------------lftL~GHlDYV 96 (1202)
T KOG0292|consen 79 NYKTRRC--------------------------------------------------------------LFTLLGHLDYV 96 (1202)
T ss_pred eccccee--------------------------------------------------------------hhhhcccccee
Confidence 9977654 45678999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--------
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-------- 461 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-------- 461 (755)
..+.|++.- .++++|.|.+|+||+..+++|+.++ +|+.+|.|.+|+| ..++++++|.|.+|||||+..-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCC
Confidence 999999988 9999999999999999999999999 5999999999999 9999999999999999998531
Q ss_pred --------------------eEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 462 --------------------QVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 462 --------------------~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
.++ .+.+|...|+.++|+|.-..|++|+.|..|++|.+...+.... .....|
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv------DtcrgH 249 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV------DTCRGH 249 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee------hhhhcc
Confidence 012 2557888899999999999999999999999999987654321 124457
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+.|+++-|+| ...+|++.+.|+.|+|||+......... .......+.++-+|..+++++| .|+-+.+|.++..++
T Consensus 250 ~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tf--rrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 250 YNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTF--RRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred cCCcceEEecC-ccceeEecCCCccEEEEecccccceeee--eccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc
Confidence 88999999999 8899999999999999999876555544 4456788899999998866654 677788888876553
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=268.50 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=240.5
Q ss_pred cccceeeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 227 KLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
.+-++.+|.+.++++.|.| .+++|++++.|+.|+||++-... .+.+++.+|..+|.+++|+++|..++|++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR------RCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc------ceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 3445678899999999999 89999999999999999976533 3456789999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++||+++|+++..+..
T Consensus 280 ~~lKlwDtETG~~~~~f~~------------------------------------------------------------- 298 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHL------------------------------------------------------------- 298 (503)
T ss_pred eeeeeeccccceEEEEEec-------------------------------------------------------------
Confidence 9999999999987655431
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
...+.|+.|+|++ .+++|+.|+.|+.||+++++.++.+. |-+.|..|.|-+ ++.+|++.+.|+.++||+.+..-
T Consensus 299 --~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 299 --DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred --CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCc
Confidence 2356789999988 88999999999999999999888884 889999999999 99999999999999999999887
Q ss_pred EEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC--CCCeEEEEEcCCCCCEEEE
Q 004410 463 VVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP--GKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 463 ~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~--~~~I~~v~fsp~d~~~l~s 538 (755)
.+... .......++..+|+++.++.-+.|+.|.+|.+...-... .......| .+.-..+.|+| |+.+|++
T Consensus 376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n-----kkK~feGh~vaGys~~v~fSp-DG~~l~S 449 (503)
T KOG0282|consen 376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN-----KKKRFEGHSVAGYSCQVDFSP-DGRTLCS 449 (503)
T ss_pred cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC-----HhhhhcceeccCceeeEEEcC-CCCeEEe
Confidence 66433 334456789999999999999999999999865432211 11111112 23456789999 9999999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEE
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWN 593 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd 593 (755)
|..||.+.+||..+....-+. ..|..+++.+.|+|.. ..+||++.||.|++|+
T Consensus 450 GdsdG~v~~wdwkt~kl~~~l--kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 450 GDSDGKVNFWDWKTTKLVSKL--KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCccEEEeechhhhhhhcc--ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999998875554444 6688999999999965 5799999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=232.70 Aligned_cols=264 Identities=16% Similarity=0.261 Sum_probs=218.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
++......|+.+.+.||++.||+++. ..||+||++.... .+..++.+|++.|.++.|..||++++||++||+++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----CceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 33333345778999999999998876 4799999986543 24467899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+....+ .....|..
T Consensus 109 IWdlR~~~~---------------------------------------------------------------qR~~~~~s 125 (311)
T KOG0315|consen 109 IWDLRSLSC---------------------------------------------------------------QRNYQHNS 125 (311)
T ss_pred EEeccCccc---------------------------------------------------------------chhccCCC
Confidence 999976432 22345779
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE---
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--- 463 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--- 463 (755)
+|+++..+|+. .|+++..+|.|++||+....|...+- ....|.++.+.| ++.+++.+...|..++|++...+.
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcccc
Confidence 99999999998 99999999999999999998877773 567899999999 999999999999999999976532
Q ss_pred ----EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 ----VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ----~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.++..|...+..+.++||+++||+++.|.+++||++.+. +..+. ....|...+.+++|+. ++.+|+++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~------~l~gh~rWvWdc~FS~-dg~YlvTa 276 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLEL------VLTGHQRWVWDCAFSA-DGEYLVTA 276 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEE------EeecCCceEEeeeecc-CccEEEec
Confidence 257788899999999999999999999999999999987 22221 2344667999999999 99999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEE
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATF 573 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f 573 (755)
+.|+.+++|+....+..... .+|.....+++.
T Consensus 277 ssd~~~rlW~~~~~k~v~qy--~gh~K~~vc~~l 308 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGKEVRQY--QGHHKAAVCVAL 308 (311)
T ss_pred CCCCceeecccccCceeeec--CCcccccEEEEe
Confidence 99999999999887655554 556666555554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=233.24 Aligned_cols=244 Identities=28% Similarity=0.510 Sum_probs=210.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+..|+++|.++.|+-||+|.+|++.|.+|++|+...+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--------------------------------------- 51 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--------------------------------------- 51 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce---------------------------------------
Confidence 45778999999999999999999999999999999876654
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
++++.+|..+|.+++.+.|+ .+++++.|+.|.+||+.+|+.++.|. |.+.|+.++
T Consensus 52 -----------------------iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 52 -----------------------IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred -----------------------eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 56678899999999999999 99999999999999999999999995 999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCe--EEE-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ--VVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
|+. +...+++|+.|.++++||.++.. +++ +......|.+|.. .+..|++|+.||+++.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 333 4456678888888 55789999999999999999998753
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
..-+.+|+++.|++ +++..++++.|+++++.|-.+.+ ..+++ ..+...-...+++....++++|++||.|+
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkG--hkn~eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKG--HKNMEYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcc--cccceeeeeeeecccceeEEeccCCceEE
Confidence 23467999999999 99999999999999999977644 33333 33444556778888889999999999999
Q ss_pred EEEcCCCCc
Q 004410 591 IWNYSNQDK 599 (755)
Q Consensus 591 iWd~~~~~~ 599 (755)
+||+.+...
T Consensus 253 ~wdLvd~~~ 261 (307)
T KOG0316|consen 253 FWDLVDETQ 261 (307)
T ss_pred EEEecccee
Confidence 999998763
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=261.42 Aligned_cols=286 Identities=20% Similarity=0.291 Sum_probs=244.9
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+.++|.++.|+|...+++++--+|.|.||++++.. +.+.+.-.+-+|.+.+|-+-.+++++|+.|..|+||+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 357899999999999999999999999999987654 3345666788999999999999999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
..+++. ++.|..|..-|.
T Consensus 84 ynt~ek--------------------------------------------------------------V~~FeAH~DyIR 101 (794)
T KOG0276|consen 84 YNTGEK--------------------------------------------------------------VKTFEAHSDYIR 101 (794)
T ss_pred ccccee--------------------------------------------------------------eEEeecccccee
Confidence 988865 456778999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
+++.+|.. +++++|.|-+|++||.+.+ .|.++| +|..+|.+++|+|.|.+.|++++.|++|+||.+....+. ++.+
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g 181 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG 181 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence 99999999 9999999999999998754 677777 599999999999999999999999999999999887665 7889
Q ss_pred CCcceEEEEEccCC--CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 469 IREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 469 ~~~~V~~v~~spdg--~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
|...|.+++|-+-| .+|++|+.|.+|+|||..+..++++ ...|...|..+.|+| .-.++++|+.||+++
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVR 252 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEE
Confidence 99999999999854 7999999999999999999988765 334678899999999 889999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
||...+....-.. .-....+++++-.+.+..++.|.+.|.|. .++-.+++
T Consensus 253 iWhs~Ty~lE~tL--n~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 253 IWNSKTYKLEKTL--NYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred EecCcceehhhhh--hcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC
Confidence 9998775443332 23456899999888888888887776654 45555443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=249.07 Aligned_cols=253 Identities=21% Similarity=0.329 Sum_probs=224.8
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+.+.+|..+|+.+-|+|+-..++++++|++|++||..+++.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~------------------------------------- 142 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL------------------------------------- 142 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------------------------------------
Confidence 4456788999999999999999999999999999999988864
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEE-ecCCcEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVF-SHNNYVT 432 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~-~h~~~V~ 432 (755)
...++||...|.+++|+..| +|++++.|-.+++||..+ .+|++.. +|...|.
T Consensus 143 -------------------------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 143 -------------------------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVS 197 (406)
T ss_pred -------------------------hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccccee
Confidence 34568999999999999999 999999999999999876 4555554 6999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
+++|-| .++++++++.|.+|+.|++.++-++ ++.+|.+.|..+..+.||..+++++.|.++++|-+.+++....
T Consensus 198 ~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~---- 272 (406)
T KOG0295|consen 198 SVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE---- 272 (406)
T ss_pred eEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh----
Confidence 999999 8999999999999999999999888 6889999999999999999999999999999999998855432
Q ss_pred ecccccCCCCCeEEEEEcCC--------------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 512 LQGKKKLPGKRITGFQFSPS--------------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~--------------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
...|...|.+++|.|. .+.++.+++.|++|++||+.+....+.. .+|...|..++|+|.|
T Consensus 273 ----lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ----LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--VGHDNWVRGVAFSPGG 346 (406)
T ss_pred ----hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--ecccceeeeeEEcCCC
Confidence 3346778889988772 2358999999999999999998877777 8999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccc
Q 004410 578 KHVVSPSEDSNIYIWNYSNQDKSS 601 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~~~~~~~ 601 (755)
+||+++.+|+++++||+++.+...
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeee
Confidence 999999999999999999988443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=231.37 Aligned_cols=285 Identities=18% Similarity=0.274 Sum_probs=236.0
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+++..+.++...+..+.|+-||++.++++.|.+|++|+...+. +.+++.+|...|..++.+.|...+++|+.|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------LIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------eeeeecCCCceeeeccccccccccccCCCC
Confidence 4566788889999999999999999999999999999965433 457899999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
..|.+||+.+|+. +..+.
T Consensus 81 k~v~vwDV~TGkv--------------------------------------------------------------~Rr~r 98 (307)
T KOG0316|consen 81 KAVQVWDVNTGKV--------------------------------------------------------------DRRFR 98 (307)
T ss_pred ceEEEEEcccCee--------------------------------------------------------------eeecc
Confidence 9999999999875 45678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~--~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
+|.+.|+.++|+.+. .+++|+.|.+|++||.++. ++++++. ..+.|.+|.++ +..+++|+.||++|.||++.+
T Consensus 99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecc
Confidence 999999999999988 9999999999999998754 6677774 67889999874 588999999999999999999
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+... .....+|++++|++|++..++++.++++++.|-.+++++...+ +++. ...-...+++. ....+++|+.
T Consensus 176 ~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk----Ghkn--~eykldc~l~q-sdthV~sgSE 247 (307)
T KOG0316|consen 176 TLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK----GHKN--MEYKLDCCLNQ-SDTHVFSGSE 247 (307)
T ss_pred eeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc----cccc--ceeeeeeeecc-cceeEEeccC
Confidence 8763 3345789999999999999999999999999999999876422 2111 11234456666 6789999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCc-eEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGS-QMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~-v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
||.|++||+.+.....+. ..+... +++++++|.-..++++.. +.+.+|-
T Consensus 248 DG~Vy~wdLvd~~~~sk~--~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKL--SVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred CceEEEEEeccceeeeee--ccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 999999999886666554 334444 789999998877777754 4566664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=255.33 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=250.8
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+..|...+..+.|-++...|++|+.|..|++|+...... ....+|.|..+.|+.++|.+++.++++++.|+.++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-----~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-----ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-----hhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 4566777888899999999999999999999999875542 23456788889999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++...+. .+++.||.+
T Consensus 245 ~Wnvd~~r~--------------------------------------------------------------~~TLsGHtd 262 (459)
T KOG0288|consen 245 LWNVDSLRL--------------------------------------------------------------RHTLSGHTD 262 (459)
T ss_pred eeeccchhh--------------------------------------------------------------hhhhccccc
Confidence 999976643 567889999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++||+||+++...+....
T Consensus 263 kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 263 KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred ceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEee
Confidence 99999999877 6999999999999999999999998777778888875 4789999999999999999999988788
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
..+.|+++..+++|..|++++.|.++.+.|+++......+.. .+.+ .....+.++|+| ++.++++|+.||.|+||
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA--~g~k--~asDwtrvvfSp-d~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA--EGFK--CASDWTRVVFSP-DGSYVAAGSADGSVYIW 414 (459)
T ss_pred cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec--cccc--cccccceeEECC-CCceeeeccCCCcEEEE
Confidence 888999999999999999999999999999999887765432 1222 234589999999 99999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+..+.+.............|++++|+|.|.+|++++.++.+.+|.
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999988887775444444799999999999999999999999993
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=267.70 Aligned_cols=250 Identities=32% Similarity=0.563 Sum_probs=211.5
Q ss_pred eeecc-cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAH-EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.+.+| ...|.++.|+++|++|++++.|+.+++|+......
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------------------------- 193 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------------------------- 193 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------------------------
Confidence 34444 78999999999999999999999999999854431
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCeEEEEE-ecCCcEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl-~s~~~~~~~-~h~~~V~~i 434 (755)
.....+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ .|...|+++
T Consensus 194 ---------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~ 252 (456)
T KOG0266|consen 194 ---------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSV 252 (456)
T ss_pred ---------------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEE
Confidence 0134457899999999999999 9999999999999999 556888888 599999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe--eeeeEE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY--QQNQIC 511 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~--~~~~~~ 511 (755)
+|+| +++++++|+.|++|+|||+++++++ .+..|...|++++|+++|.+|++++.||.|++||+.++... ..
T Consensus 253 ~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~---- 327 (456)
T KOG0266|consen 253 AFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL---- 327 (456)
T ss_pred EecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec----
Confidence 9999 7799999999999999999998887 68899999999999999999999999999999999999843 21
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCC---ceEEEEEecCCCEEEEEeCCCc
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG---SQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~---~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+.+. .... .++.++|+| ++.++++++.|+.+++||+......... ..|.. .+.+...++.++++++|+.|+.
T Consensus 328 ~~~~-~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~ 402 (456)
T KOG0266|consen 328 LSGA-ENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY--TGHSNLVRCIFSPTLSTGGKLIYSGSEDGS 402 (456)
T ss_pred ccCC-CCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee--cccCCcceeEecccccCCCCeEEEEeCCce
Confidence 1111 1122 799999999 9999999999999999999876544444 33333 4556666889999999999999
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|++||+.++.
T Consensus 403 v~~~~~~s~~ 412 (456)
T KOG0266|consen 403 VYVWDSSSGG 412 (456)
T ss_pred EEEEeCCccc
Confidence 9999999866
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=245.83 Aligned_cols=246 Identities=19% Similarity=0.340 Sum_probs=216.0
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|.|+++.|-.++++||+.|++|+|||+.+++.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-------------------------------------- 185 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-------------------------------------- 185 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--------------------------------------
Confidence 345789999999999999999999999999999999999864
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
..++.||...|..+++++-. +|++++.|+.|+.||++..+.++.+ +|-..|.|+
T Consensus 186 ------------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 186 ------------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred ------------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 34567899999999999988 9999999999999999999999887 699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~ 513 (755)
+.+| .-+.|++|+.|.++||||+++...+ .+.+|...|..+.+.|-...+++|+.|++|++||++.++....
T Consensus 242 ~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------ 314 (460)
T KOG0285|consen 242 DLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------ 314 (460)
T ss_pred eccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe------
Confidence 9999 8899999999999999999998766 6888999999999999888999999999999999999987643
Q ss_pred ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
...|...+.+++.+| ....+++++.| .|+-|++........ ..+|...|.+++...|| ++++|++.|.|.+||
T Consensus 315 --lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n--lsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 315 --LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN--LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc--cccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 223667899999999 77777777766 578888776443333 37788999999998775 788999999999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
..++-
T Consensus 388 wksg~ 392 (460)
T KOG0285|consen 388 WKSGH 392 (460)
T ss_pred cCcCc
Confidence 99875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=242.57 Aligned_cols=283 Identities=19% Similarity=0.258 Sum_probs=233.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC---CEEEEEcCCCcEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVW 311 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~LaSgs~Dg~I~vW 311 (755)
.|.|.++... ++++++|+.||.++||+..... ..++.||.++|.+++|.-.. ..|++++.|.++++|
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 4566666655 7899999999999999976433 34678999999999885433 369999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
.++.++... +.+..-.||...|
T Consensus 175 ~~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 175 KWNVGENKV----------------------------------------------------------KALKVCRGHKRSV 196 (423)
T ss_pred EecCchhhh----------------------------------------------------------hHHhHhcccccce
Confidence 987765321 1123335999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCC-------------------------CeEEEEE-ecCCcEEEEEEeeCCCCEE
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGI-------------------------DRCLRVF-SHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-------------------------~~~~~~~-~h~~~V~~i~fsp~d~~~l 444 (755)
.++...+++ .+++|+.|.+|.||+..+ +.++.++ +|...|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 999999999 999999999999999321 1223333 4999999999986 7889
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.--.. .. ....|...|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-~~----s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-SQ----SLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCcee-EE----eeecchhhhh
Confidence 999999999999999999998888889999999999999999999999999999997643221 11 1334677999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcce-eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVV-GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++.|+|.+..++++++.|+++++||.+... ..+.. .+|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceee--ccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999999999999999999876 55555 7899999999997 67899999999999999754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=244.23 Aligned_cols=287 Identities=22% Similarity=0.339 Sum_probs=238.8
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCccccc-ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
..+.|+.|+|||++|++|+.||.|.||++-.+...-. .+.....+.-|+.+|.|+.||.|...||+|+.||.|+||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 3456789999999999999999999999875542111 112223466789999999999999999999999999999999
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+|.+++.+. ..|...|+++
T Consensus 294 tG~ClRrFd-------------------------------------------------------------rAHtkGvt~l 312 (508)
T KOG0275|consen 294 TGQCLRRFD-------------------------------------------------------------RAHTKGVTCL 312 (508)
T ss_pred cchHHHHhh-------------------------------------------------------------hhhccCeeEE
Confidence 998765543 3699999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe---ccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY---TDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~---~~~ 469 (755)
.|+.|+ .+++++.|.+|+|--+.+|++++.|. |..+|+...|.+ +|..+++++.||+|++|+..+.+++.. .+.
T Consensus 313 ~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 313 SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 999999 99999999999999999999999995 999999999999 999999999999999999999988742 234
Q ss_pred CcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 470 REIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 470 ~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
...|.++-.-| +...++++...++|+|.++...-. ..+. . -+..++...+...+| .+.++.+.+.|+.++-+
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV-rsfs---S--GkREgGdFi~~~lSp-kGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV-RSFS---S--GKREGGDFINAILSP-KGEWIYCIGEDGVLYCF 464 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE-eeec---c--CCccCCceEEEEecC-CCcEEEEEccCcEEEEE
Confidence 45688888877 567899999999999999975433 2211 1 122456677888999 99999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
........... .-|..-+..++-+|..+.|++-++||.+++|.
T Consensus 465 ~~~sG~LE~tl--~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTL--PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeee--ecccccccccccCcccchhhhhcccchhhhcC
Confidence 87765544444 56778889999999999999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=254.42 Aligned_cols=242 Identities=19% Similarity=0.334 Sum_probs=209.1
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+..|-+.|+++.|+++|.++++|..+|.|++|+..-. ..+.+++|. ..|++++|+|+...++||+.||+|+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEE
Confidence 3456678899999999999999999999999996532 233455555 9999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||....+ +-..+.||.-
T Consensus 206 iWdf~~~k--------------------------------------------------------------ee~vL~GHgw 223 (464)
T KOG0284|consen 206 IWDFRMPK--------------------------------------------------------------EERVLRGHGW 223 (464)
T ss_pred EEeccCCc--------------------------------------------------------------hhheeccCCC
Confidence 99975442 2344689999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~ 466 (755)
.|.++.|+|.. .|++++.|..|++||.+++.|+.++ .|...|..+.|+| ++++|++++.|..++++|+++. ++..+
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 99999999988 9999999999999999999999998 4999999999999 8899999999999999999954 44578
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
.+|+..|+++.|+| ...+|.+|+.||.|..|.+...+.+ ......|...|++++|+| =+.+|++|+.|.++
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-------~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~ 374 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-------GEIPPAHDGEIWSLAYHP-LGHILATGSNDRTV 374 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccc-------cCCCcccccceeeeeccc-cceeEeecCCCcce
Confidence 88999999999999 5678888999999999999844433 233456889999999999 89999999999999
Q ss_pred EEEECC
Q 004410 546 RVLCGE 551 (755)
Q Consensus 546 ~iwd~~ 551 (755)
++|.-.
T Consensus 375 rfw~r~ 380 (464)
T KOG0284|consen 375 RFWTRN 380 (464)
T ss_pred eeeccC
Confidence 999744
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=280.76 Aligned_cols=276 Identities=16% Similarity=0.304 Sum_probs=213.4
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+|.+++|+...... ........+.+|.+.|.+++|+|+|++||+|+.|+.|+||++....... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~------~~------- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG------RD------- 521 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc------cc-------
Confidence 56678887654322 1111223466799999999999999999999999999999975421000 00
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEE
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRL 413 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~i 413 (755)
...+...+. +...|.+++|++. + +|++++.||+|++
T Consensus 522 -----------------------------------------~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 522 -----------------------------------------IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred -----------------------------------------cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 000112222 3457899999875 4 9999999999999
Q ss_pred EeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEc-cCCCeEEEEeCC
Q 004410 414 WQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYC-PDGKGGIVGTMT 491 (755)
Q Consensus 414 Wdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~s-pdg~~la~gs~d 491 (755)
||+.+++.+..+ .|...|++++|+|.++.+|++|+.||+|++||++++..+....+...+.++.|+ ++|.+|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 999999988888 499999999999767899999999999999999998877555556789999995 579999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCc
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGS 567 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~ 567 (755)
|.|++||+++...... ....|...|+.+.|. ++.++++++.|++|+|||..... ........+|...
T Consensus 640 g~I~iwD~~~~~~~~~-------~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPLC-------TMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccce-------EecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 9999999987642110 123467789999996 56789999999999999986421 1112223568888
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 568 v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+..++|++++.+|++|+.|+.|+||+...+
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999999999997654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=234.98 Aligned_cols=283 Identities=18% Similarity=0.267 Sum_probs=239.3
Q ss_pred eeeccCcceeec---CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 233 RIIDRHGSATLK---PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 233 ~~~~~~~~~~~s---pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+|...|-.++|+ |+|-+|+++++|+.-.+.+-.++.+ .-++.||+++||...++.+...-|+++.|-+-+
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------igtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------IGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------EEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 344555567776 6899999999999988887665554 246899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||..+|..+..+ .|..
T Consensus 85 vw~a~tgdelhsf---------------------------------------------------------------~hkh 101 (334)
T KOG0278|consen 85 VWDAVTGDELHSF---------------------------------------------------------------EHKH 101 (334)
T ss_pred hhhhhhhhhhhhh---------------------------------------------------------------hhhh
Confidence 9999887644322 3788
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.|..++|+.|. +|++|+.++.+||||++..+. ...+ +|.+.|..+.|.. .++.|++.+.|++||+||.+++..++.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEE
Confidence 89999999998 999999999999999976543 3333 5999999999998 888899999999999999999999998
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......|+++.++++|.+|.++ ..+.|.+||..+..++....+ ...|.+..++| +...+++|+.|..++
T Consensus 181 L~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---------P~nV~SASL~P-~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 181 LEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---------PCNVESASLHP-KKEFFVAGGEDFKVY 249 (334)
T ss_pred EecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---------ccccccccccC-CCceEEecCcceEEE
Confidence 8899999999999999887664 467899999998887754332 35688899999 779999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.||..+....-.. ..+|.++|.++.|+|||...++|++||+|+||.+..++
T Consensus 250 kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9998876544332 27899999999999999999999999999999988765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=228.80 Aligned_cols=249 Identities=20% Similarity=0.264 Sum_probs=202.7
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
.+|+..+++++|+|.|++||+|+.|.++.||.-... .+.+..+|.||+..|.|++|+++|+|||||+.|+.|.||
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-----EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 356777889999999999999999999999985533 344567899999999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
.+..+... ..+..+++|...|
T Consensus 133 e~deddEf-----------------------------------------------------------ec~aVL~~HtqDV 153 (312)
T KOG0645|consen 133 EIDEDDEF-----------------------------------------------------------ECIAVLQEHTQDV 153 (312)
T ss_pred EecCCCcE-----------------------------------------------------------EEEeeeccccccc
Confidence 98755421 1134578899999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCC---CCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
..+.|+|.. .|++++.|.+|++|.-. .-.|..++. |...|.+++|+| .+..|++++.|++|+||-+...- .
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~---~ 229 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDL---S 229 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCc---c
Confidence 999999987 99999999999999765 346777774 888999999999 99999999999999999866321 1
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..|...+..+.|. ...|++++.|+.|++|.-........+.. +......|...|++++|+|...+.|++++.||.|+
T Consensus 230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCceEE
Confidence 2355778889997 45899999999999998764311111111 22234568889999999996689999999999999
Q ss_pred EEECC
Q 004410 547 VLCGE 551 (755)
Q Consensus 547 iwd~~ 551 (755)
+|.+.
T Consensus 307 ~W~l~ 311 (312)
T KOG0645|consen 307 FWELE 311 (312)
T ss_pred EEEec
Confidence 99753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=242.78 Aligned_cols=264 Identities=25% Similarity=0.354 Sum_probs=219.7
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
.+..|.+..|.+.||-+.||++|+|||||+.|.+..+|++.....+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---------------------------------- 259 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---------------------------------- 259 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce----------------------------------
Confidence 3455778999999999999999999999999999999997543211
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--Cc
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NY 430 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~ 430 (755)
+..+++.+|..+|..+.|+||. +|++++.|..+.+||+.++.+...+.+. ..
T Consensus 260 -------------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 260 -------------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred -------------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 2357788999999999999999 9999999999999999999999999754 88
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc-ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~-~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+.+.+|.| |+..|++|+.|+.+..||+.....-.|.+... .|.+++.++||+++++.+.|..|++|+..+.....
T Consensus 315 ~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--- 390 (519)
T KOG0293|consen 315 VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--- 390 (519)
T ss_pred cceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc---
Confidence 99999999 99999999999999999999887767776554 59999999999999999999999999988654331
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCc
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSN 588 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~ 588 (755)
......+|++++++. +++++++.-.+..|++||+.+.....+........-+..-||.- +..++++|++|+.
T Consensus 391 ------lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 391 ------LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred ------cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 122356899999999 99999999999999999998755444442133344566677754 4589999999999
Q ss_pred EEEEEcCCCCcccCCCccc
Q 004410 589 IYIWNYSNQDKSSSRSKSI 607 (755)
Q Consensus 589 I~iWd~~~~~~~~~~~~~~ 607 (755)
||||+..+++.........
T Consensus 464 vyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred EEEEEccCCceeEeecCCc
Confidence 9999999998655544444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=223.43 Aligned_cols=287 Identities=17% Similarity=0.245 Sum_probs=227.9
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.-.++.+.++.+|.+|.++++|.++.||-...+.+ .-++.||+++|||+..+-+.++|+||+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------lGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------eeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 3566777788899999999999999999999997543332 246899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+||+.+|+++..++ -..
T Consensus 78 LWDv~tGk~la~~k---------------------------------------------------------------~~~ 94 (327)
T KOG0643|consen 78 LWDVETGKQLATWK---------------------------------------------------------------TNS 94 (327)
T ss_pred EEEcCCCcEEEEee---------------------------------------------------------------cCC
Confidence 99999998765543 235
Q ss_pred CEEEEEEcCCCeEEEEe------CCCcEEEEeCC-------CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 390 EVLDLSWSKNGFLLSSS------ADKTVRLWQVG-------IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s------~Dg~V~iWdl~-------s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
+|..+.|+.+|.++..+ ..+.|.++|++ ..++...+ .+...++.+-|.| -+.+|++|..||.|.+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISI 173 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEE
Confidence 68889999999333333 33679999987 44544444 5889999999999 9999999999999999
Q ss_pred EEcCCCeEE-E-eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 456 WEVRRCQVV-D-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 456 wdl~~~~~~-~-~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
||+++++.. . -..|...|+.+++++|..++++++.|.+-++||+.+..++.+.. ...+|++.+++| -.
T Consensus 174 ~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---------te~PvN~aaisP-~~ 243 (327)
T KOG0643|consen 174 YDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---------TERPVNTAAISP-LL 243 (327)
T ss_pred EEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---------ecccccceeccc-cc
Confidence 999997544 3 46788899999999999999999999999999999988876543 356899999999 45
Q ss_pred CEEEEEECCCcEEEEECCcceeeE------------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKF------------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..++.|+.....-|--......+| .+...+|-++|++++|+|+|+..++|++||.|+|.-++..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 555555443332222222222222 2234679999999999999999999999999999987654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=265.29 Aligned_cols=319 Identities=20% Similarity=0.298 Sum_probs=239.8
Q ss_pred hcccccccccceeeeeccCcceeecCCCCeeEEee--CCCeEEEEECCCCccccc-----ccccceeeecccccEEEEEE
Q 004410 220 VKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELS-----SLYTGQEFLAHEGSILTMKF 292 (755)
Q Consensus 220 ~~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs--~dg~V~Vw~~~~~~~~~~-----~~~~~~~l~~H~~~V~~l~f 292 (755)
.++.|+.+-. ..+.++.++|||..+|+|+ .|+.++||+...-..+.. -....-++..|.+.|.|+.|
T Consensus 4 ~kp~wv~H~~------~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 4 LKPTWVNHNE------KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF 77 (942)
T ss_pred ecccccccCC------eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE
Confidence 3455665543 3467799999999999999 899999998653221111 01122346689999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCc
Q 004410 293 SLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (755)
Q Consensus 293 spdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (755)
+|||+|||+|+.|+.|.||..... .....- ...+... .. .
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~f----------gs~g~~~------------------------~v-----E 117 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEI-GSGTVF----------GSTGGAK------------------------NV-----E 117 (942)
T ss_pred CCCCCeEeeccCcceEEEeeeccc-CCcccc----------ccccccc------------------------cc-----c
Confidence 999999999999999999987641 000000 0000000 00 0
Q ss_pred ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 373 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
..+.+..+.+|.+.|.+++|+|++ +|++++.|++|.|||..+.++++++. |...|..+.|.| -|+||++-+.|
T Consensus 118 ----~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdD 192 (942)
T KOG0973|consen 118 ----SWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDD 192 (942)
T ss_pred ----eeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCC
Confidence 013467788999999999999999 99999999999999999999999885 999999999999 99999999999
Q ss_pred CcEEEEEcCCCeEEEec-------cCCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 451 GKVRIWEVRRCQVVDYT-------DIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~-------~~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
++|+||++.+-.+.+.. .....+..+.|+|||++|++... ...+.|.+-.+.+.-.. .-.|
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~--------LvGH 264 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKD--------LVGH 264 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeee--------eecC
Confidence 99999998775554321 23345889999999999998543 23477777655543321 2346
Q ss_pred CCCeEEEEEcCC----C--------CC----EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 520 GKRITGFQFSPS----D--------PS----KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 520 ~~~I~~v~fsp~----d--------~~----~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.++++++.|+|. . +. .+++|+.|+.|-||........+... .-....|.+++|+|||..|+.+
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH-NLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-hhhcCceeeeeEcCCCCeEEEE
Confidence 789999999982 1 11 67899999999999987665555542 2245689999999999999999
Q ss_pred eCCCcEEEEEcCCCC
Q 004410 584 SEDSNIYIWNYSNQD 598 (755)
Q Consensus 584 s~Dg~I~iWd~~~~~ 598 (755)
|.||+|.+..++..+
T Consensus 344 S~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 344 SLDGTVALIHFEEKE 358 (942)
T ss_pred ecCCeEEEEEcchHH
Confidence 999999999998754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=251.81 Aligned_cols=385 Identities=15% Similarity=0.201 Sum_probs=287.2
Q ss_pred CCCceEEEccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcchhhhhhhhhhhhcccccccccc--
Q 004410 153 GKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKLGA-- 230 (755)
Q Consensus 153 d~g~~~~~~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~~~~~~~~~k~~~~~w~~~~~~-- 230 (755)
|+...|++++|.. ||.|+.+...-.|+|++|++ +|+.+..|+...++.+....++...+.-+++|.+
T Consensus 324 ~R~l~F~P~ky~s--------LR~VPaY~r~irErFeRcLD---LYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~ 392 (733)
T KOG0650|consen 324 DRKLNFIPQKYKS--------LRKVPAYERSIRERFERCLD---LYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRC 392 (733)
T ss_pred ccccccccccchh--------hhcchhHHHHHHHHHHHhHH---hhhCcccccceecCCHHHhcccCCChhhcCCCccee
Confidence 5667899999998 99999999999999999999 5788889999999988888888888888888876
Q ss_pred ---eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEEcCC
Q 004410 231 ---MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASGGED 305 (755)
Q Consensus 231 ---~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSgs~D 305 (755)
+.+|.+.+.+++..|.|.+||+|+.||+|+||.+.++.... +++ -.+.|.||+|+|.+. .||++-.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 67888999999999999999999999999999987665422 111 345899999999764 56665544
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
. +.|-+..-|..+....... +.+... .....+..++.|.....+...+-++...
T Consensus 465 ~-~~ivnp~~G~~~e~~~t~e-----ll~~~~--------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I 518 (733)
T KOG0650|consen 465 C-VLIVNPIFGDRLEVGPTKE-----LLASAP--------------------NESEPDAAVVTWSRASLDELEKGVCIVI 518 (733)
T ss_pred c-eEEeCccccchhhhcchhh-----hhhcCC--------------------CccCCcccceeechhhhhhhccceEEEE
Confidence 4 6665544442221100000 000000 0011222444454443333334466677
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.|...|..+.|+..| +|++..-+ ..|.|.++.......-| ...+.|.++.|+| ...+|++++ ...|+|||+..
T Consensus 519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~k 596 (733)
T KOG0650|consen 519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSK 596 (733)
T ss_pred ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhH
Confidence 899999999999999 88887653 67999999887777666 3678899999999 666666665 46899999998
Q ss_pred CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+.++ .+......|..++.+|.|..|++|+.|+.+..||+.-..... .....|...++.++|++ .-.++++|
T Consensus 597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy-------k~lr~H~~avr~Va~H~-ryPLfas~ 668 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY-------KTLRLHEKAVRSVAFHK-RYPLFASG 668 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh-------HHhhhhhhhhhhhhhcc-ccceeeee
Confidence 7766 455566789999999999999999999999999998653321 12345778999999999 88899999
Q ss_pred ECCCcEEEEECCc---c-----e---eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 540 SADSLVRVLCGEN---V-----V---GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 540 s~Dg~I~iwd~~~---~-----~---~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+.||++.|+...- . . ..+.+........|..+.|+|...+|++++.||+|++|
T Consensus 669 sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 SDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999986331 1 1 11122112223458899999999999999999999998
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=238.74 Aligned_cols=283 Identities=21% Similarity=0.310 Sum_probs=232.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.+++|+|...+=.+....-++.||+..... ..+++.-.+..|.++.|..||++||.|...|.|+|+|..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 4667889999987753333444578999865432 222344466789999999999999999999999999954
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+.. .+..+.+|+.+|..+
T Consensus 99 ~r~--------------------------------------------------------------iLR~~~ah~apv~~~ 116 (487)
T KOG0310|consen 99 SRV--------------------------------------------------------------ILRQLYAHQAPVHVT 116 (487)
T ss_pred cHH--------------------------------------------------------------HHHHHhhccCceeEE
Confidence 421 256678999999999
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEeccCC
Q 004410 395 SWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIR 470 (755)
Q Consensus 395 ~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~~~~ 470 (755)
.|+|.+ .|++|+.|+.+++||+.+......+ .|.++|.|.+|+|.++.++++|++||+|++||++.. ..+....|.
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg 196 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG 196 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC
Confidence 999977 8899999999999999998864444 599999999999988889999999999999999987 666778899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.+|..+.+-|.|..|++++ ...|++||+-+|.... .....|.+.|||+.+.. ++..|++++-|+.|++||.
T Consensus 197 ~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll-------~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL-------TSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred CceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh-------hhhhcccceEEEEEeec-CCceEeecccccceEEEEc
Confidence 9999999999999999977 4579999999554332 12334889999999998 8899999999999999997
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+...... ....++|.+++.+|+++.++.|-.||.+.+=+....+
T Consensus 268 t~~Kvv~s---~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 268 TNYKVVHS---WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred cceEEEEe---eecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 76555544 4577899999999999999999999998887554444
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=234.18 Aligned_cols=247 Identities=28% Similarity=0.523 Sum_probs=209.9
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++.+|.+.|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------------------------------- 43 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------------------------- 43 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------------------
Confidence 45678999999999999999999999999999999876531
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
...+..|...+..+.|++++ .|++++.|+.|++||+.+++.+..+. |...|.++.
T Consensus 44 -----------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 44 -----------------------LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred -----------------------EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 23455688888999999999 99999999999999999877777664 778999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+| ++.++++++.|+.|++||+.+++.. .+..+...+.+++|+|++.++++++.+|.|++||+++++......
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~----- 174 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT----- 174 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----
Confidence 999 7888888888999999999977666 455688899999999999999988889999999999776654322
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+...|.++.|+| ++..+++++.++.|++||.......... ..|...+.+++|++++.++++++.||.|++|++
T Consensus 175 ---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 175 ---GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTL--RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred ---cCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecch--hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 3556899999999 7788999999999999998864433332 367779999999999999999988999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 249 ~~~~ 252 (289)
T cd00200 249 RTGE 252 (289)
T ss_pred CCce
Confidence 8765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-28 Score=235.03 Aligned_cols=258 Identities=23% Similarity=0.392 Sum_probs=221.2
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+.+..+.|..|||||+||++|+.||.|.||+..+|+....+....
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------------------- 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------------------- 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------------
Confidence 556778899999999999999999999999999987654433211
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEee
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNP 438 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp 438 (755)
-..|.-|..+|.|+.|+.|. .|++|+.||.|++|.+.+|+|++.|. |...|+|+.|+.
T Consensus 256 -------------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 256 -------------------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -------------------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 12345578899999999999 99999999999999999999999995 999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
|+..+++++.|.++||.-+.+++++ .+.+|...|+.+.|.+||..+++++.||+|++|+..+..+..+++. .
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------L 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------C
Confidence 9999999999999999999999988 6889999999999999999999999999999999999988765442 2
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.....|+.+-..|.++..++++...++|.|.++......-........+...+++.+|.|.++.+.++|+.+|.|.+.+|
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 24567899999998899999999999999998775333222222345567788899999999999999999999999998
Q ss_pred Ccc
Q 004410 598 DKS 600 (755)
Q Consensus 598 ~~~ 600 (755)
+-+
T Consensus 470 ~LE 472 (508)
T KOG0275|consen 470 KLE 472 (508)
T ss_pred cee
Confidence 733
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=229.07 Aligned_cols=301 Identities=15% Similarity=0.241 Sum_probs=236.0
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCC-----ccc------ccccccceeeecccccEEEEEEecCCC
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQ-----SRE------LSSLYTGQEFLAHEGSILTMKFSLDGQ 297 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~-----~~~------~~~~~~~~~l~~H~~~V~~l~fspdg~ 297 (755)
..+..|+..+.+.+|+|||.++|+|+.|-.|+|.|+... .++ ....+.+++|..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 346677888889999999999999999999999998621 111 112245678889999999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
.|++|+.|++|+++|+......+.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~------------------------------------------------------- 210 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAF------------------------------------------------------- 210 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHH-------------------------------------------------------
Confidence 9999999999999998654321111
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
.......+|.++.|+|.| +|+.|....++++||+.+.+|...- +|.+.|+++.+++ .+++.++|+.||.
T Consensus 211 -----K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 211 -----KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGA 284 (430)
T ss_pred -----HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCc
Confidence 112245689999999999 9999999999999999999987655 4999999999999 9999999999999
Q ss_pred EEEEEcCCCeEEEec--c-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 453 VRIWEVRRCQVVDYT--D-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 453 V~iwdl~~~~~~~~~--~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
|+|||--+++++... . ....|.+..|..+|++|++.+.|..+++|.+.+++.+....-.- .......-+...|+
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg---~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG---TTGRQKHRTQAVFN 361 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC---cccchhhhhhhhhc
Confidence 999999988888432 2 34579999999999999999999999999999999876533210 00111222344565
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......|.---..+.+.-||.++........ .+|.+.+..+.-||.+.-+++++.|-.+++|--
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 5233333334456778889988765444332 789999999999999999999999999999964
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=242.97 Aligned_cols=307 Identities=16% Similarity=0.199 Sum_probs=236.3
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
+-..+.+|...|.++++.|.|-.|++|+-|.+|++||+......+..+...+....| .|.+++|++.|..|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeEEEEecCc
Confidence 334566677788899999999999999999999999998776555555444444444 699999999999888888888
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
..+|+|-...+...... .+.. -.-+....|
T Consensus 237 qakl~DRdG~~~~e~~K-GDQY-------------------------------------------------I~Dm~nTKG 266 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSK-GDQY-------------------------------------------------IRDMYNTKG 266 (641)
T ss_pred ceeEEccCCceeeeeec-cchh-------------------------------------------------hhhhhccCC
Confidence 99999954433222111 0000 011334579
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-eEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~-~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
|...++|.+|+|.. .+++++.||++||||+... +.+.++. ..-.++.++|+| ++.+|++|..||.|.+|+
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeee
Confidence 99999999999987 9999999999999998754 3444553 345689999999 999999999999999999
Q ss_pred cCCCeEE----EeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 458 VRRCQVV----DYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 458 l~~~~~~----~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
.....+. ....|.. .|++|.|++||++|++-+.|+++++||++..+........+. ....-+.++|+|
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-----t~~~~tdc~FSP- 419 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-----TPFPGTDCCFSP- 419 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-----ccCCCCccccCC-
Confidence 8654321 2334555 799999999999999999999999999997654332221111 234567899999
Q ss_pred CCCEEEEEEC------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 532 DPSKVIVTSA------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 532 d~~~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.++|++|.. .+.+.+||..+....++. .-....|..+.|+|.-+.|+.|+.||.++||==
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki--~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI--DISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEe--cCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 8899998854 578999998887777776 334778999999999999999999999998743
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-28 Score=238.35 Aligned_cols=293 Identities=19% Similarity=0.316 Sum_probs=237.1
Q ss_pred cccccc-cceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE
Q 004410 223 GWLKKL-GAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA 300 (755)
Q Consensus 223 ~w~~~~-~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La 300 (755)
-+-++| ..+.+|.+.|.+++=+|.. ..+|+|+.||.|+||++.. ..+..++.+|.|.|..|++.. ..++
T Consensus 53 ~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------R~~~~~f~AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 53 VFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------RECIRTFKAHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred HhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh-------hhhhheeecccCceeeEEecc--cceE
Confidence 344443 5689999999999999998 7899999999999999654 334567899999999999986 6789
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
|+|.|.+|+.|.+... +
T Consensus 124 tvgdDKtvK~wk~~~~---------------------------------------------------------------p 140 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP---------------------------------------------------------------P 140 (433)
T ss_pred EecCCcceeeeeccCC---------------------------------------------------------------c
Confidence 9999999999987431 1
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
++++.+ .+.++++.-+..+ .++|++.+ |.|||.....++..+. ..+.|.++.|+|....+|++|..|+.|.|||+
T Consensus 141 ~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 141 LHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred ceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 222222 3445566655545 78888754 8999999999998886 67889999999988889999999999999999
Q ss_pred CCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 459 RRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 459 ~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+....+........-..|+|+|.+-.+++|..|..++.||++...... .....|...|.++.|+| .|..+++
T Consensus 218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-------~v~~dhvsAV~dVdfsp-tG~Efvs 289 (433)
T KOG0268|consen 218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-------NVHKDHVSAVMDVDFSP-TGQEFVS 289 (433)
T ss_pred ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc-------hhhcccceeEEEeccCC-Ccchhcc
Confidence 999988766677778899999998899999999999999998754321 22456788999999999 8999999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|+.|.+|+||........-... ..--..|.++.||.|.+||++||+|++|++|.-...++
T Consensus 290 gsyDksIRIf~~~~~~SRdiYh-tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYH-TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccccceEEEeecCCCcchhhhh-HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999977643322221 12235789999999999999999999999999876653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=243.29 Aligned_cols=235 Identities=21% Similarity=0.305 Sum_probs=205.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
-++++..|-+-.+++++|+.|..|+||++++..+ .+++.+|.+-|.|++.+|...+++|++.|-+|++||++.
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEeccccee-------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 4567788999999999999999999999887654 356999999999999999999999999999999999865
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.= ...++|.||..-|.+++
T Consensus 129 ~w-------------------------------------------------------------a~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 129 EW-------------------------------------------------------------ACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ce-------------------------------------------------------------eeeeEEcCcceEEEEEE
Confidence 41 22567899999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCC
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~ 470 (755)
|+|.. .+++++-|++|++|.+.+..+..++ +|...|+|+.+-+. +..+|++|+.|.+|+|||..+..++ ++.+|.
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt 227 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT 227 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence 99976 9999999999999999999998888 49999999999872 2349999999999999999999988 578899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
..|..++|+|.-..|++|+.||+++||+..+-++.... .....++.+++-.+ +.+.+++|...|.|.|
T Consensus 228 ~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL--------n~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL--------NYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh--------hcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999887765432 23457899999998 6777888888887654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=246.02 Aligned_cols=283 Identities=18% Similarity=0.278 Sum_probs=234.9
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+.+|+..|.+++++.+...+++|+. +.++||+..+.. +.+++. .+-|.+..|-|.++++++|...|.+.|
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k-------ciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK-------CIRTIT--CGYILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc-------eeEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence 4567777778888888777777654 468888865322 233332 236778888888888888888888888
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
+|+.+... +.+...|.+.
T Consensus 439 fdlaS~~l--------------------------------------------------------------~Eti~AHdga 456 (888)
T KOG0306|consen 439 FDLASASL--------------------------------------------------------------VETIRAHDGA 456 (888)
T ss_pred EEeehhhh--------------------------------------------------------------hhhhhccccc
Confidence 88765542 3345689999
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CeE--------EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DRC--------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-----~~~--------~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
|+.++.+||+ .+++++.|++|++||..- +.. .+++.....|.|+.++| |+++|+++-.|.+|+||
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEE
Confidence 9999999999 999999999999998631 111 13344778899999999 99999999999999999
Q ss_pred EcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
-+.+-+.. .+.+|.-+|.|+..+||++.+++|+.|.+|++|-+.-|.+... ...|...|.+++|.| ...+
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS--------~fAHdDSvm~V~F~P-~~~~ 606 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS--------FFAHDDSVMSVQFLP-KTHL 606 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh--------hhcccCceeEEEEcc-ccee
Confidence 99997765 8999999999999999999999999999999999998876532 345788999999999 8899
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.+++.|+.|+-||+......... .+|...|++++.+|+|.|++++|.|.+|++|.-...
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L--~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKL--DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEEecCcceEEeechhhhhhheee--ccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 999999999999999887666665 789999999999999999999999999999997663
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=220.87 Aligned_cols=274 Identities=15% Similarity=0.236 Sum_probs=219.8
Q ss_pred eccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.|.+.+++|||. ..++++|+.|++||+|++..... ...+....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 467888999994 45666899999999999875422 122445679999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++ +..+..|.++|..
T Consensus 102 ~S~Q---------------------------------------------------------------~~~v~~Hd~pvkt 118 (347)
T KOG0647|consen 102 ASGQ---------------------------------------------------------------VSQVAAHDAPVKT 118 (347)
T ss_pred cCCC---------------------------------------------------------------eeeeeecccceeE
Confidence 8885 2345679999999
Q ss_pred EEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---ec
Q 004410 394 LSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YT 467 (755)
Q Consensus 394 l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~ 467 (755)
+.|-+.. .|++|+.|++|+.||.+....+.++.....++++..- ..+++.+..+..|.+|+++...... ..
T Consensus 119 ~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~S 195 (347)
T KOG0647|consen 119 CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIES 195 (347)
T ss_pred EEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence 9998765 7999999999999999999999999999999999863 4788999999999999998765442 23
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc----C-CCCCeEEEEEcCCCCCEEEEEECC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK----L-PGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~----~-~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..+-.+.+|+..+|....+.|+.+|.+.|..+..+.....+. +..+.. . .-..|++++|+| ....|++.+.|
T Consensus 196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt--FkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsD 272 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT--FKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSD 272 (347)
T ss_pred cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee--EEEeccCCCCCCceEEecceEeec-ccceEEEecCC
Confidence 456679999999999999999999999999998864322222 222221 1 124578899999 77889999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
|++.+||.......... ..|..+|++.+|+.+|.+++-+.
T Consensus 273 Gtf~FWDkdar~kLk~s--~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 273 GTFSFWDKDARTKLKTS--ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceEEEecchhhhhhhcc--CcCCCccceeEecCCCCEEEEEe
Confidence 99999997654333332 56889999999999999887553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=217.55 Aligned_cols=269 Identities=21% Similarity=0.337 Sum_probs=232.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++++|.+.|.+++|+-+|..||+|+.|+++.||++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 5678999999999999999999999999999999987653221
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
-....+|.+.|-.++|+|.. .|++++.|++|++||+++++++........-.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12346899999999999876 99999999999999999999999998777777789
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
|+| ++.+++.++.|..|.+.|.++.+.+........+.-++|+-++..++.....|.|.|......+.++.
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s-------- 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS-------- 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc--------
Confidence 999 99999999999999999999999998777888899999998888888888889999998887666543
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+.|.....++.|+| +++++++|+.|..+.+||...+.+.... .++.-+|..++|+.||++||+|++|-.|-|=++.
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~i--sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCI--SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheee--ccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 445778899999999 9999999999999999999998888777 7788999999999999999999999999999999
Q ss_pred CCCcccCCCccccceeeeecCCeEEEEcCCCCC
Q 004410 596 NQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLE 628 (755)
Q Consensus 596 ~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~~ 628 (755)
+|.+.. ...+...+..++|.+..
T Consensus 262 tGd~~~----------eI~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 262 TGDRVW----------EIPCEGPTFTVAWHPKR 284 (313)
T ss_pred cCCeEE----------EeeccCCceeEEecCCC
Confidence 998332 22344566677886653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=247.73 Aligned_cols=293 Identities=17% Similarity=0.160 Sum_probs=209.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCccccccc------ccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSL------YTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRV 310 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~------~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~v 310 (755)
+.....++++..+++++.+.....|+...+...+..- .....+.+|.+.|++++|+| ++++||+|+.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 3345566676666666666666677654332211100 01134789999999999999 8899999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++..... ...++..+.+|...
T Consensus 103 Wdi~~~~~~~~-------------------------------------------------------~~~~l~~L~gH~~~ 127 (493)
T PTZ00421 103 WGIPEEGLTQN-------------------------------------------------------ISDPIVHLQGHTKK 127 (493)
T ss_pred EecCCCccccc-------------------------------------------------------cCcceEEecCCCCc
Confidence 99875431100 01345678899999
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|+|||+++++.+ .+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9999999975 89999999999999999999888885 899999999999 9999999999999999999998876 45
Q ss_pred ccCCcc-eEEEEEccCCCeEEEEe----CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-
Q 004410 467 TDIREI-VSAVCYCPDGKGGIVGT----MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS- 540 (755)
Q Consensus 467 ~~~~~~-V~~v~~spdg~~la~gs----~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s- 540 (755)
..|... +..+.|.+++..|++++ .|+.|++||+++....... . .......+....|++ ++.+|++++
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~----~--~~d~~~~~~~~~~d~-d~~~L~lggk 279 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST----V--DLDQSSALFIPFFDE-DTNLLYIGSK 279 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----e--ccCCCCceEEEEEcC-CCCEEEEEEe
Confidence 556543 45678999887777654 4789999999875432110 0 001223455667888 788888877
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.|+.|++||+.+....+... ..+..++..++|.|.-..=+- .--..++|.+..
T Consensus 280 gDg~Iriwdl~~~~~~~~~~-~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~ 332 (493)
T PTZ00421 280 GEGNIRCFELMNERLTFCSS-YSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTY 332 (493)
T ss_pred CCCeEEEEEeeCCceEEEee-ccCCCCCcceEeccccccccc--ceeeeEEEEecC
Confidence 59999999998765444322 345567788888885322111 112346676653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=204.67 Aligned_cols=292 Identities=19% Similarity=0.286 Sum_probs=229.7
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCccc-----ccccc---cceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE-----LSSLY---TGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~-----~~~~~---~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
..+.+++|+|.|.+.|.|+...+.+|..+...... ....+ ..+.-+.|.+.|.|.+|+|+|++||||+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 45778999999999999999999999876432211 11111 12334579999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++.-.+...+.. ..+-.+|.-|
T Consensus 113 ik~l~fn~dt~~~---------------------------------------------------------~g~dle~nmh 135 (350)
T KOG0641|consen 113 IKVLPFNADTCNA---------------------------------------------------------TGHDLEFNMH 135 (350)
T ss_pred EEEEecccccccc---------------------------------------------------------cCcceeeeec
Confidence 9997664432110 0123456779
Q ss_pred CCCEEEEEEcCC---C--eEEEEe-CCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 388 SSEVLDLSWSKN---G--FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 388 ~~~V~~l~~s~~---~--~L~s~s-~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+.|.+++|..+ + .|++++ .|..|++-|..+++....+ +|.+-|.++-- .++-+|++|+.|.+||+||++-
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeec
Confidence 999999999753 2 556544 5778888899999998888 49998887742 2678999999999999999998
Q ss_pred CeEEEecc-----C---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 CQVVDYTD-----I---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 ~~~~~~~~-----~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
..++...+ . ...|.+++..|.|++|++|..|..+.+||++.++.++. ...|...|.++.|+| .
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp-~ 284 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP-G 284 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC-C
Confidence 87774322 1 25799999999999999999999999999999998764 445788999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCcc-eeeE-EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 533 PSKVIVTSADSLVRVLCGENV-VGKF-KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~-~~~~-~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..++++++.|..|++-|+... ...+ ......|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999997642 1111 22225688888999999999999999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=235.98 Aligned_cols=231 Identities=21% Similarity=0.339 Sum_probs=199.5
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
....|.|+.+ |...+++|..|.+|+|||..+-.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------------------------------------- 229 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------------------------------------- 229 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH--------------------------------------------
Confidence 3467999999 466799999999999999866543
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDD 441 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~ 441 (755)
+..+.||++.|.|+.|... .|++|+.|.+|++||++++++++++ .|...|..+.|+.
T Consensus 230 ------------------~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--- 287 (499)
T KOG0281|consen 230 ------------------LKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--- 287 (499)
T ss_pred ------------------HHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---
Confidence 3457899999999999754 8999999999999999999999988 5899999999964
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
.++++++.|.++.+||+....-+ .+.+|...|..+.| +.+++++++.|.+|++|++.++..+.. ..
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRt--------l~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRT--------LN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehh--------hh
Confidence 89999999999999999876533 36789999999999 567999999999999999999988764 33
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.|...|.|+++ .++++++|+.|.+|++||+..+...... .+|..-|.++.| |.+.|++|+.||+|+|||+..+
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvL--eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHH--hchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence 46678888888 5699999999999999999987665544 679899999998 5688999999999999999987
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
.
T Consensus 431 l 431 (499)
T KOG0281|consen 431 L 431 (499)
T ss_pred c
Confidence 6
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=219.87 Aligned_cols=281 Identities=22% Similarity=0.347 Sum_probs=223.5
Q ss_pred ceeecCCCC-eeE--Ee-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEE
Q 004410 240 SATLKPGDH-ELT--LG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRV 310 (755)
Q Consensus 240 ~~~~spdg~-~la--sg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~v 310 (755)
++.|||--. .|| ++ ...|++.|.+...... + ...+.+ .-.+.+..++|+++ .+.+++++.||+++|
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-i---~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-I---QECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCC-e---EEEEee-ecccceeEeeecCCCcceEEEEecCceEEE
Confidence 478888532 333 22 2478899988752111 1 111222 23578999999995 468889999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+... .+|++.++.|..+
T Consensus 88 ~d~~~~-------------------------------------------------------------s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 88 FDLTMP-------------------------------------------------------------SKPIHKFKEHKRE 106 (311)
T ss_pred eccCCC-------------------------------------------------------------CcchhHHHhhhhh
Confidence 995321 3578889999999
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEEEe
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVDY 466 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~~~ 466 (755)
|.++.|++.. .+++++.|++|++|+....+.+.+|. |..-|...+|+|..+++|++++.|+++++||++. ++.+.+
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i 186 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI 186 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE
Confidence 9999999865 88888999999999999999999994 9999999999999999999999999999999985 455567
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
..|...|.++.|+. +...|++|+.|+.|++||++.-+... .....|+-.|..+.|+|.....|++++.|-++
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 78888999999998 67788999999999999999765321 11345778999999999888999999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEc
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~ 594 (755)
+|||......... ....|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 260 riw~~~~~ds~~e-~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIE-TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccccchhhhh-hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999764322221 1245888888999987 5779999999999999983
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=251.18 Aligned_cols=255 Identities=16% Similarity=0.297 Sum_probs=220.5
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
......|..++|+|...+++++-..|+|++||..-+.+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl------------------------------------------ 43 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL------------------------------------------ 43 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhH------------------------------------------
Confidence 34556789999999999999999999999999865543
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp 438 (755)
+..|..|.++|..++|+|++ .+++|+.|-+|++|+..+.+|+.++ +|-++|..+.|++
T Consensus 44 --------------------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 44 --------------------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred --------------------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 56678899999999999999 9999999999999999999999887 6999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee--------
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ-------- 509 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~-------- 509 (755)
.-.+++++|.|.+|+||+..++.++ .+.+|...|.|..|+|....+++++-|.+|+|||+..-+......
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8999999999999999999999988 688999999999999999999999999999999997533221110
Q ss_pred -------------EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 510 -------------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 510 -------------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
.........|...|+-++|+| .-.++++|+.|..|++|.......--.-...+|...|.++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 111122345788999999999 778999999999999999887554444444789999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
..+|++.|+|++|+|||+.....
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred cceeEecCCCccEEEEecccccc
Confidence 99999999999999999987653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=240.06 Aligned_cols=273 Identities=21% Similarity=0.361 Sum_probs=223.1
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.|+ ..+.||+|.. ..|++|+...... . +...-+...|+++.|+++|.+||+|..+|.|.|||+.+.+.+
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v--~-----~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~- 252 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSV--T-----ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT- 252 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCce--E-----EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-
Confidence 6788 4455666544 4699999765541 1 112223789999999999999999999999999998776533
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEEcCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKN 399 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s~~ 399 (755)
..+.+ |...|-+++|. .
T Consensus 253 -------------------------------------------------------------~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 253 -------------------------------------------------------------RTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred -------------------------------------------------------------ccccCCcCceeEEEecc-C
Confidence 33445 89999999999 3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEE-E-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-EEeccCCcceEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRV-F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-VDYTDIREIVSAV 476 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~-~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~-~~~~~~~~~V~~v 476 (755)
..+.+|+.|+.|..+|++..+.... + .|...|..+.|++ ++++|++|+.|+.+.|||....+. ..+..|...|.++
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 3899999999999999998766554 4 4999999999999 999999999999999999966544 4788999999999
Q ss_pred EEcc-CCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE--ECCCcEEEEECC
Q 004410 477 CYCP-DGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT--SADSLVRVLCGE 551 (755)
Q Consensus 477 ~~sp-dg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~--s~Dg~I~iwd~~ 551 (755)
+|+| ....||+| +.|+.|++||+.++..+.. ...+..|..+.|++ ..+.|+++ ..++.|.||+..
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEecc
Confidence 9999 56677774 5699999999999988753 23568999999999 55555543 457899999998
Q ss_pred cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 552 NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+....... .+|...|..++++|||.+|++|+.|.++++|++-+..
T Consensus 420 s~~~~~~l--~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 420 SMKLVAEL--LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ccceeeee--cCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 85555555 8899999999999999999999999999999998754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=231.68 Aligned_cols=301 Identities=20% Similarity=0.305 Sum_probs=239.7
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCccc---cc-------ccccceee-ecccccEEEEEEecCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRE---LS-------SLYTGQEF-LAHEGSILTMKFSLDG 296 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~---~~-------~~~~~~~l-~~H~~~V~~l~fspdg 296 (755)
+..+..|.-.+.+++++|++++.++++.+++|.=|++..+... .. .....+.- .+|...|.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5566677778888999999999999999999999997765432 11 11111112 3899999999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
+|||+|+.|..|.||+..+.+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh---------------------------------------------------------- 236 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH---------------------------------------------------------- 236 (479)
T ss_pred cEEEecCCCceEEEecCcccch----------------------------------------------------------
Confidence 9999999999999999987753
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.+|.+.|.+++|-... .|++++.|++|++|+++....+.++ +|.+.|..|.... .++.+-+|+.|.+++
T Consensus 237 ----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~r 311 (479)
T KOG0299|consen 237 ----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVR 311 (479)
T ss_pred ----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeE
Confidence 45578999999999998766 9999999999999999887776665 7999999999887 788888888999999
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc----CCCCCeEEEEEcC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK----LPGKRITGFQFSP 530 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~----~~~~~I~~v~fsp 530 (755)
+|++.....+.+.++...+-|++|-.+ ..+++|+.+|.|.+|++...+.+........-... .+...|++++..|
T Consensus 312 lwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 312 LWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred EEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence 999988777778888889999999654 68999999999999999988887655442211111 1123899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEE
Q 004410 531 SDPSKVIVTSADSLVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWN 593 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd 593 (755)
...++++|+.+|.|++|.+.+....+.. ......+.|++++|+++|++|++| +....+--|-
T Consensus 391 -~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 391 -GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred -cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 9999999999999999998886433322 113467889999999999977666 3333343343
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=248.58 Aligned_cols=274 Identities=20% Similarity=0.336 Sum_probs=230.6
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+.+..|. +.++++++.+++|++|+...... +...+.||.+.|++++|..-+.+|++|+.|.+++|||+.++
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~------i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL------ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceE------EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 34556666 67889999999999999765443 22348899999999999877889999999999999999888
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
++ .+.+.+|.+.|.++..
T Consensus 282 ~C--------------------------------------------------------------~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 EC--------------------------------------------------------------THSLQGHTSSVRCLTI 299 (537)
T ss_pred cE--------------------------------------------------------------EEEecCCCceEEEEEc
Confidence 75 4556789999999876
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceE
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVS 474 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~ 474 (755)
.+. .+++|+.|.+|++|++.++.++.++. |.+.|.++..+ +.++++|+.|++|++||+.+++++ .+.+|...|+
T Consensus 300 ~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 543 78889999999999999999999998 99999999985 799999999999999999999988 6888999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
++.+.+. ..++.|+.|++|++||+.+. +++.. ...|..-+..+.+ .++.|++++.|++|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------l~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------LQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------hcCCccccccccc---ccceeEeccccccEEEeecccC
Confidence 9988665 89999999999999999998 55543 2234555666665 4589999999999999999887
Q ss_pred eeeEEEeeec-cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 554 VGKFKASAFR-VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 554 ~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
...... .. |.+.|..+++. ...+++++.||.+++||+.++...
T Consensus 444 ~~~~~~--~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 444 ECLRTL--EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceeeee--ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 766665 33 66788888876 578999999999999999998733
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=213.52 Aligned_cols=294 Identities=22% Similarity=0.288 Sum_probs=226.7
Q ss_pred ccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
.+.+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+++.++.+......+..+.|.......+......
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~------ 78 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE------ 78 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC------
Confidence 34445555678899999999999999999999999999999999999988888888888876654443332211
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS 433 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~ 433 (755)
+.++...+.. ..+.++.|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+.. ..-..
T Consensus 79 --------d~tIryLsl~----dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi 145 (311)
T KOG1446|consen 79 --------DDTIRYLSLH----DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPI 145 (311)
T ss_pred --------CCceEEEEee----cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-CCCcc
Confidence 1111111111 135578899999999999999988 999999999999999998888777643 23345
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCC---eEEE--ec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRC---QVVD--YT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~---~~~~--~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
++|.| .|-+||++...+.|++||++.- .... .. ......+.+.|+|||++|++++..+.+++.|.-+|.++..
T Consensus 146 ~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 146 AAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 78999 9999999998889999999863 2222 22 3456789999999999999999999999999999997776
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+...... ..--....|.| +++++++|+.||+|.+|++.+.......... +.+++.++.|.|....++++ +.
T Consensus 225 fs~~~~~-----~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s 295 (311)
T KOG1446|consen 225 FSGYPNA-----GNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SS 295 (311)
T ss_pred EeeccCC-----CCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cc
Confidence 5542211 11225778999 9999999999999999999887766665222 68889999999976666655 56
Q ss_pred cEEEEEcCCC
Q 004410 588 NIYIWNYSNQ 597 (755)
Q Consensus 588 ~I~iWd~~~~ 597 (755)
.+.+|=....
T Consensus 296 ~l~fw~p~~~ 305 (311)
T KOG1446|consen 296 NLVFWLPDED 305 (311)
T ss_pred eEEEEecccc
Confidence 8888866543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=226.82 Aligned_cols=275 Identities=17% Similarity=0.322 Sum_probs=216.6
Q ss_pred cccceeeeeccCcceeecCCC---CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 227 KLGAMARIIDRHGSATLKPGD---HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg---~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
....+.+|.+.+.++++--.+ ..+++++.|.++++|..+.....+.... ...||+..|.++...++|..+++|+
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~---~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK---VCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh---HhcccccceeEEEecCCCCeEEeec
Confidence 445677888888876654333 3699999999999999987766555443 3459999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|.+|+||+..... ..++..... ...+..+. ..-.....|+.+
T Consensus 213 ~D~~lkiWs~~~~~-~~~~E~~s~--------------------~rrk~~~~----------------~~~~~~r~P~vt 255 (423)
T KOG0313|consen 213 WDTMLKIWSVETDE-EDELESSSN--------------------RRRKKQKR----------------EKEGGTRTPLVT 255 (423)
T ss_pred ccceeeecccCCCc-cccccccch--------------------hhhhhhhh----------------hhcccccCceEE
Confidence 99999999943221 111110000 00000000 000112467889
Q ss_pred ecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
+.||...|.++.|++.+.+++++.|.+|+.||+.++.++..+..+..++|+..+| ..++|++|+.|..|++||.+++
T Consensus 256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC
Confidence 9999999999999997799999999999999999999999999999999999999 9999999999999999999875
Q ss_pred eEE--EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCe-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QVV--DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~~--~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.++ ++.+|...|.++.|+| +...|++|+.|+++++||+++.+ .+.. ...|..+|.++.|+ ++..|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--------I~~h~DKvl~vdW~--~~~~Iv 404 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--------IAGHNDKVLSVDWN--EGGLIV 404 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--------eccCCceEEEEecc--CCceEE
Confidence 333 6889999999999999 45678889999999999999876 3332 23467899999998 567999
Q ss_pred EEECCCcEEEEECCc
Q 004410 538 VTSADSLVRVLCGEN 552 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~ 552 (755)
+|+.|.+|+|+....
T Consensus 405 SGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 405 SGGADNKLRIFKGSP 419 (423)
T ss_pred eccCcceEEEecccc
Confidence 999999999997543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=248.32 Aligned_cols=248 Identities=22% Similarity=0.316 Sum_probs=201.1
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---------------------------c---------c-----
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------------------------E---------L----- 271 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---------------------------~---------~----- 271 (755)
.|.+.|.++.||+||++||+|+.|+.|+||.+..... . .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6778888999999999999999999999998654000 0 0
Q ss_pred -c-----------ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCC
Q 004410 272 -S-----------SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHL 339 (755)
Q Consensus 272 -~-----------~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (755)
. .-.+..+|.||.+.|..|.||.+ ++|++++.|.+||+|++...+++..|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----------------
Confidence 0 00112458899999999999975 58999999999999999877654332
Q ss_pred CceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 004410 340 SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG 417 (755)
Q Consensus 340 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~ 417 (755)
.|..-|+|++|+|.+ ++++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 399999999999955 99999999999999999
Q ss_pred CCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccC------CcceEEEEEccC-CCeEEE
Q 004410 418 IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDI------REIVSAVCYCPD-GKGGIV 487 (755)
Q Consensus 418 s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~------~~~V~~v~~spd-g~~la~ 487 (755)
..+.+........|++++|.| +|++.+.|+.+|.+++|+....+++. ...+ ...|+.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 988887777779999999999 89999999999999999999887663 1111 237999999984 446888
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.+.|..|+|||.++..++..++- .. ....-....|+. |+++|++++.|..|+||+...
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG----~~--n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKG----FR--NTSSQISASFSS-DGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcc----cc--cCCcceeeeEcc-CCCEEEEeecCceEEEEeCCC
Confidence 89999999999988887764332 11 123345678888 999999999999999999754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=210.28 Aligned_cols=285 Identities=14% Similarity=0.218 Sum_probs=238.2
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I 308 (755)
.+.+|...+.+++|+-+|..||+|+.|++++||++..... .....+.+|.+.|-.++|+| ...+|++++.|.+|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 4455667788899999999999999999999999876532 12234689999999999988 56799999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+..+++...+.. .
T Consensus 90 r~wd~r~~k~~~~i~~---------------------------------------------------------------~ 106 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIET---------------------------------------------------------------K 106 (313)
T ss_pred EEEEeccCcEEEEeec---------------------------------------------------------------c
Confidence 9999998876544321 1
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
+.=.-+.|+|+| +++.++.|..|.+.|.++.+.+...+....+..+.|+- ++++|+.....|+|.|.....-+.+ .+
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC-CCCEEEEecCCceEEEEecccccccccc
Confidence 122347899999 99999999999999999999999998889999999995 8888888888899999999987766 67
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..|.....||.|+|+|++||+|+.|..+.+||+...-+... ...+.-+|..+.|+- ++++|++++.|..|-
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~--------isRldwpVRTlSFS~-dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC--------ISRLDWPVRTLSFSH-DGRMLASASEDHFID 256 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee--------eccccCceEEEEecc-CcceeeccCccceEE
Confidence 88999999999999999999999999999999987554432 223567899999999 999999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---------CcEEEEEcC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---------SNIYIWNYS 595 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---------g~I~iWd~~ 595 (755)
|-+..++..... ..+.++...++|+|...+||-++.| |.|+||-+.
T Consensus 257 IA~vetGd~~~e---I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 257 IAEVETGDRVWE---IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eEecccCCeEEE---eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999888777766 4578899999999999999988765 456665443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=223.85 Aligned_cols=276 Identities=20% Similarity=0.282 Sum_probs=232.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+...|....+++|+.|..+.++|..... +.+.|.||...|+.+.|+|+...+++++.|..|+||.+.....
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 5556666789999999999999976443 3356899999999999999999999999999999998754321
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
......|..+|+.+..+|.|
T Consensus 296 ------------------------------------------------------------~~~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 296 ------------------------------------------------------------PTSSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred ------------------------------------------------------------ccccccccccceeeeeccCC
Confidence 12345699999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~ 475 (755)
||++++.|++..+.|++++.++....+. -.+++++|+| |+.+|.+|..||.|+|||+..+..+ .+.+|.++|.+
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999999999999999999888764 4589999999 9999999999999999999988766 68889999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
|+|+.+|.+|++++.|+.|++||++..+...++++ . ....+..+.|.+ .+.+|++++.|=+|++++-.+...
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~-----~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--D-----EKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeec--c-----ccccceeEEEcC-CCCeEEeecceeEEEEEecccccc
Confidence 99999999999999999999999998876654432 1 224789999999 889999998887777777544333
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
........|.+..+.+.|....++++++|.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 333333567788899999999999999999999998865
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=213.71 Aligned_cols=270 Identities=20% Similarity=0.333 Sum_probs=219.5
Q ss_pred eEEeeCCCeEEEEECCCCcccc-----cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 250 LTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 250 lasgs~dg~V~Vw~~~~~~~~~-----~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
+++|+....|.=+++....+.. .++.+.-.+.+|.++|++++. ++.|+|+|+.|-+|+|||+.....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q------ 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ------ 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh------
Confidence 4566666666666554333111 112223457899999999999 599999999999999999876543
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---e
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---F 401 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~ 401 (755)
+..+..|.+.|+++.|.+.- .
T Consensus 76 --------------------------------------------------------lg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 76 --------------------------------------------------------LGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred --------------------------------------------------------hcceeccccceEEEEecCCcchhh
Confidence 33455699999999999866 8
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|++|+.||.|.+|++....++..+. |.+.|+.|+++| .+++-++.+.|+.+++||+-.++.-.........+.+.|+|
T Consensus 100 LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 9999999999999999999999995 999999999999 99999999999999999999988777667777777799999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
.|.+++++..+ .|-+|.+.+..+...... ..++.++.|. ++..+++|..|+.|.+||..+.......
T Consensus 179 ~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~---------~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~- 245 (362)
T KOG0294|consen 179 QGDHFVVSGRN-KIDIYQLDNASVFREIEN---------PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF- 245 (362)
T ss_pred CCCEEEEEecc-EEEEEecccHhHhhhhhc---------cccceeeeec--CCceEEEecCCceEEEeccCCCccceee-
Confidence 99999987754 689999988776543221 2456666665 7789999999999999999886555555
Q ss_pred eeccCCceEEEEE--ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 561 AFRVAGSQMFATF--TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 561 ~~~~~~~v~~l~f--spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|...|-++.+ .|++.||+|+|.||.|+|||++...
T Consensus 246 -~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 -LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred -ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 789999999884 5678999999999999999998775
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=239.08 Aligned_cols=254 Identities=15% Similarity=0.244 Sum_probs=192.3
Q ss_pred eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeee-eeeecCCCCCc
Q 004410 253 GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERL-DGFDVQDTDPS 330 (755)
Q Consensus 253 gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~-~~~~~~~~~~~ 330 (755)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +.+||||+.||+|+|||+.++... ..
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------- 113 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------
Confidence 5668899999865432 33467899999999999996 789999999999999999754210 00
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCC
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSAD 408 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~D 408 (755)
...++..+.+|...|.+++|+|++ .|++++.|
T Consensus 114 ----------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 114 ----------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred ----------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 012345677899999999999988 46789999
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE-----EEEccCC
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA-----VCYCPDG 482 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~-----v~~spdg 482 (755)
++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+ .+..|.+.+.+ ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999999888887888999999999 9999999999999999999998876 46667665433 3456898
Q ss_pred CeEEEEeCCC----cEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 483 KGGIVGTMTG----NCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 483 ~~la~gs~dg----~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
.+|++++.++ .|+|||++. ...+....+ ..+...+.. .|.++++.++++|+.|+.|++|++.......
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l------d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI------DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe------cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 9999987764 799999995 333322111 112223333 3335478899999999999999987653222
Q ss_pred EEeeeccCCceEEEEEecCC
Q 004410 558 KASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fspdg 577 (755)
. ....+..++..++|.|..
T Consensus 300 l-~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 300 V-NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred e-cccccCCCccceEEcccc
Confidence 2 224466788899999964
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-25 Score=217.88 Aligned_cols=297 Identities=15% Similarity=0.205 Sum_probs=236.1
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
++|..|++.|.+++.+|+.+++|||+.|..-.||++.++....++..+...+.++.|+.++ ..+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg----------------tlL 121 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG----------------TLL 121 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc----------------eEE
Confidence 4578899999999999999999999999999999999999999999888888888887654 122
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~ 435 (755)
.++.-++.+.+|.... +.....+...-..|.-|.|+|.+ .|++|+.||.|.+|.+.++...+++ +|+.++++-.
T Consensus 122 ATGdmsG~v~v~~~st----g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVST----GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred EecCCCccEEEEEccc----CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 3344444455444332 12233444556788899999988 9999999999999999996666666 5999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~ 513 (755)
|.| +|+.++++..||+|++|++.+++++.... .....+++.++.++..++.|..++.+++-+..+++.+.-......
T Consensus 198 f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 198 FIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred ccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 999 89999999999999999999998874332 244578899999999999999999999999999988754321111
Q ss_pred ccccCCCCCeEEEEEcCC--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 514 GKKKLPGKRITGFQFSPS--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
.....+...+.++.+.|. .-.+.++|+-||+|.|||......... ..|...|+.+.|-+ ..+|++++.||.|++
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---CEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---ccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 122234455566666553 445788999999999999887655544 45888899999998 789999999999999
Q ss_pred EEcCCCCc
Q 004410 592 WNYSNQDK 599 (755)
Q Consensus 592 Wd~~~~~~ 599 (755)
||..+|+.
T Consensus 353 wDaRtG~l 360 (399)
T KOG0296|consen 353 WDARTGQL 360 (399)
T ss_pred eeccccce
Confidence 99999973
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=239.07 Aligned_cols=258 Identities=14% Similarity=0.187 Sum_probs=195.0
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|-..|.....++|+..+++++.+.....|+...+..+..+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 34556777778888888999999999999865442111000
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-ecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDR-------CLRVF-SHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~h~~~V~ 432 (755)
...++.. ....+.+|.+.|.+++|+| ++ +|++++.|++|++||+.++. ++..+ .|...|.
T Consensus 60 ---------~~G~~~~-~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 60 ---------DYGKLAS-NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129 (493)
T ss_pred ---------ccccCCC-CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE
Confidence 0000001 1234679999999999999 66 89999999999999997652 34444 4999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
+++|+|..+++|++|+.|++|+|||+.+++.+ .+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+....
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-- 207 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-- 207 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--
Confidence 99999944579999999999999999998776 566788899999999999999999999999999999987654321
Q ss_pred ecccccCCC-CCeEEEEEcCCCCCEEEEEE----CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-C
Q 004410 512 LQGKKKLPG-KRITGFQFSPSDPSKVIVTS----ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-E 585 (755)
Q Consensus 512 ~~~~~~~~~-~~I~~v~fsp~d~~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~ 585 (755)
.|. ..+..+.|.+ +...+++++ .|+.|++||..+....+..........+....|++++.+|++++ .
T Consensus 208 ------~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 208 ------AHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred ------cCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC
Confidence 122 2345678888 555565543 47899999998765444332223444566778999999999888 5
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|++||+.+++
T Consensus 281 Dg~Iriwdl~~~~ 293 (493)
T PTZ00421 281 EGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEEeeCCc
Confidence 9999999999876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=216.51 Aligned_cols=332 Identities=15% Similarity=0.239 Sum_probs=248.2
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|++.+..++......++.+++.|.+.+||.++.+. +..++.||.+.|++|+|++.+.+++|++.|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------CLATYTGHTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------ceeeecccccceeeEEeccccceEEEccCCc
Confidence 345678899999998888888899999999999999977654 3456899999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+-+||...-.-.+..-..+ .... .....-..+ .-..........|+. ....|+..+.+
T Consensus 213 taHIW~~av~~~vP~~~a~-~~hS-------sEeE~e~sD----e~~~d~d~~~~sD~~----------tiRvPl~~ltg 270 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAP-SDHS-------SEEEEEHSD----EHNRDTDSSEKSDGH----------TIRVPLMRLTG 270 (481)
T ss_pred chHHHHHhhcCcCCCCCCC-CCCC-------chhhhhccc----ccccccccccccCCc----------eeeeeeeeeec
Confidence 9999974211100000000 0000 000000000 000000000011111 11357889999
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
|.+.|.+..|...+ .+++++.|++..+||++++..+..+ +|....+.++-+| ..+++++.+.|.+.++||.+..-
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 99999999999988 9999999999999999999999998 5999999999999 89999999999999999998532
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+-.+.+|.+.|+++.|..+ ..+++|+.|.+|++||+++...... .--....++.++++. +...|+.--.+
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplA--------TIRtdS~~NRvavs~-g~~iIAiPhDN 419 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLA--------TIRTDSPANRVAVSK-GHPIIAIPHDN 419 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcce--------eeecCCccceeEeec-CCceEEeccCC
Confidence 3368899999999999876 4689999999999999987553211 011346788889987 77788888899
Q ss_pred CcEEEEECCccee--eEEEeeeccCCceEEEEEecCC--CEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVG--KFKASAFRVAGSQMFATFTSDG--KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~--~~~~~~~~~~~~v~~l~fspdg--~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..|++||+..... .......+|...|++++|..+. .-|++++.|..+.-|+++...
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 9999999875322 2222336788899999997654 358899999999999998654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=227.61 Aligned_cols=269 Identities=22% Similarity=0.416 Sum_probs=221.4
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..|.+.|..+.|-++...|++|+.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999865431
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAF 436 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~f 436 (755)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++...+...++ +|.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 1244567788899999999999 9999999999999999999999888 49999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
.. ....+++|+.|.+|++||+....+.........+..|+.+ +..+++|..|++|++||+++........
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~------- 339 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP------- 339 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEee-------
Confidence 87 5556999999999999999998888666666667777775 5688999999999999999988776432
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.++.|+++..++ ++..|++++.|.++.+.|+.+.. +.+....+......+.+.|||++.|+++||.||.|+||++
T Consensus 340 --~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 340 --LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred --cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 245899999999 89999999999999999988743 4444443444556889999999999999999999999999
Q ss_pred CCCCcccCCCccccceeeeecCCeEEEEcCCCC
Q 004410 595 SNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~g~ 627 (755)
.+++.+..... -.++.....++|++.
T Consensus 417 ~tgKlE~~l~~-------s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 417 FTGKLEKVLSL-------STSNAAITSLSWNPS 442 (459)
T ss_pred cCceEEEEecc-------CCCCcceEEEEEcCC
Confidence 99973322111 113335668889875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=207.97 Aligned_cols=273 Identities=19% Similarity=0.262 Sum_probs=220.7
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+..+.|+|.+..|++++.||.+++|+....... ....|..++.+++|.+ ...+++|+.||.|+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 467888999999999999999999999998765221 1235899999999987 4578999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.. ..+..|...|.+|
T Consensus 84 ~~~~---------------------------------------------------------------~~igth~~~i~ci 100 (323)
T KOG1036|consen 84 TGNE---------------------------------------------------------------DQIGTHDEGIRCI 100 (323)
T ss_pred CCcc---------------------------------------------------------------eeeccCCCceEEE
Confidence 7752 2345699999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccCC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIR 470 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~ 470 (755)
.+++-. .+++|+.|++|++||.+...+...+.....|.|+.. .++.|++|+.|..|.+||+++..... -...+
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 999755 999999999999999998777777777789999986 56899999999999999999865542 34556
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC-----CCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP-----GKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~-----~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
-.+.+|++-|++..+++++.+|.|.+=.+......+..+..+..|.... ..+|++++|+| -...+++|+.||.|
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIV 256 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceE
Confidence 7899999999999999999999988876665533333333333332222 24689999999 68899999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.+||+.+.+..... .+....|.+++|+.||..||.|+.
T Consensus 257 ~~Wd~~~rKrl~q~--~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLFNRKRLKQL--AKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEccCcchhhhhhc--cCCCCceEEEEeccCCCeEEEEec
Confidence 99999876655554 445678999999999999999874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=209.02 Aligned_cols=239 Identities=19% Similarity=0.326 Sum_probs=200.4
Q ss_pred ccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv 313 (755)
|....++|++... .+++++.||.+++||...... +.+.++.|+..|.++.|++ +++.+++++.|++|++|+.
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecC
Confidence 3344589998865 788899999999999654443 4456888999999999998 5667888899999999987
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..++ .++++.||..-|..
T Consensus 135 ~r~~--------------------------------------------------------------Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 135 NRPN--------------------------------------------------------------SVQTFNGHNSCIYQ 152 (311)
T ss_pred CCCc--------------------------------------------------------------ceEeecCCccEEEE
Confidence 5432 25678899999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eecc
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD 468 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~ 468 (755)
.+|+|.- .+++++.|+++++||++. ++.+....|...|.|+.|+.-+.+.+++|+.|+.||+||++.-+.. .+.+
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g 232 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG 232 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC
Confidence 9999965 999999999999999874 5555555699999999999989999999999999999999976533 6788
Q ss_pred CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 469 IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 469 ~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|.-.|..+.|+|. ...|++++.|-+++|||...+.-.. .....|..-+.++.|++.++.+++.++.|..++|
T Consensus 233 h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~-------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 233 HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI-------ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred CceEEEEEecCcchhhHhhhccccceEEecccccchhhh-------hhhhccceEEeccccccccCceeeecccccceee
Confidence 9999999999995 5688999999999999998654322 2234567778999999999999999999999999
Q ss_pred EE
Q 004410 548 LC 549 (755)
Q Consensus 548 wd 549 (755)
|+
T Consensus 306 w~ 307 (311)
T KOG0277|consen 306 WN 307 (311)
T ss_pred ec
Confidence 97
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=223.41 Aligned_cols=234 Identities=21% Similarity=0.327 Sum_probs=200.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv 313 (755)
.+.+.++.|-.||++||+|...|.|+|+|++... ..+.+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHH-------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 4567779999999999999999999999955422 23457899999999999995 567888999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+... ...+.+|+..|.+
T Consensus 141 s~a~v--------------------------------------------------------------~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 141 STAYV--------------------------------------------------------------QAELSGHTDYVRC 158 (487)
T ss_pred CCcEE--------------------------------------------------------------EEEecCCcceeEe
Confidence 76542 2356789999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEEE-ecc
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVVD-YTD 468 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~-~~~ 468 (755)
.+|+|-+ .+++|+.||+|++||+++. ..+..+.|..+|..+.+-| .+.++++++ ...|+|||+-++ +.+. ...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhc
Confidence 9999976 8999999999999999987 7888889999999999999 889999887 468999999954 5554 444
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
|...|||+++..++..|++|+-|+.+++||+.+.+.+..+.. .++|.+++.+| ++..+++|-.+|.+.+-
T Consensus 237 H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~-dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 237 HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSP-DDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecC-CCceEEEecccceeeee
Confidence 999999999999999999999999999999888887754432 46899999999 88999999999998876
Q ss_pred E
Q 004410 549 C 549 (755)
Q Consensus 549 d 549 (755)
+
T Consensus 307 r 307 (487)
T KOG0310|consen 307 R 307 (487)
T ss_pred h
Confidence 3
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=209.40 Aligned_cols=246 Identities=21% Similarity=0.302 Sum_probs=216.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
++++.+|+..|.+..++.+-...|+++.|-+-+||+.-++.. +.. ..|+.-|.+++|+.|.++|+||+.++.
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-lhs-------f~hkhivk~~af~~ds~~lltgg~ekl 123 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-LHS-------FEHKHIVKAVAFSQDSNYLLTGGQEKL 123 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-hhh-------hhhhheeeeEEecccchhhhccchHHH
Confidence 567889999999989988888999999999999999765543 222 248889999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
+||+|++..+ .|..++.+|
T Consensus 124 lrvfdln~p~-------------------------------------------------------------App~E~~gh 142 (334)
T KOG0278|consen 124 LRVFDLNRPK-------------------------------------------------------------APPKEISGH 142 (334)
T ss_pred hhhhhccCCC-------------------------------------------------------------CCchhhcCC
Confidence 9999986543 345678899
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+.|..+.|.... .+++++.|++||+||.+++..++.+..+..|+++.+++ ++++|.+ ...+.|.+||..+-.++..
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceee
Confidence 9999999999877 89999999999999999999999999999999999999 8876655 4568899999999999988
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......|.+.+++|+-..+++|+.|+.++.||..++..+.. ..+.|.++|.++.|+| ++...++|+.||+|+
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-------~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-------YNKGHFGPVHCVRFSP-DGELYASGSEDGTIR 292 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-------cccCCCCceEEEEECC-CCceeeccCCCceEE
Confidence 88899999999999999999999999999999999987643 2356789999999999 999999999999999
Q ss_pred EEECCc
Q 004410 547 VLCGEN 552 (755)
Q Consensus 547 iwd~~~ 552 (755)
||....
T Consensus 293 lWQt~~ 298 (334)
T KOG0278|consen 293 LWQTTP 298 (334)
T ss_pred EEEecC
Confidence 998653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=203.07 Aligned_cols=273 Identities=19% Similarity=0.233 Sum_probs=215.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
-++.|..|.|+|.++.|+.++.||.+++|++......
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~------------------------------------------- 48 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK------------------------------------------- 48 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-------------------------------------------
Confidence 3578999999999999999999999999998665321
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
....|..++++++|.++..+++|+.||.|+++|+.++.....-.|...|.||.+.+ ..+
T Consensus 49 --------------------~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 49 --------------------LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred --------------------hheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 12348899999999998899999999999999999999988888999999999999 888
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
.+++|+.|++|++||.+....+........|.++.. .|..|++|+.+..+.+||+++.....+ .....-.-.
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q------~reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQ------RRESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhh------hccccceeE
Confidence 999999999999999998766666666668888777 678999999999999999998765431 112223356
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcc----eeeEEEeeec-------cCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENV----VGKFKASAFR-------VAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~----~~~~~~~~~~-------~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
+.++++.| ++.-+++++-||.|.+=..... ..++.+..+. .--+|++++|+|-...|+||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 88999999 7888899999999988554443 2333321111 1237899999999999999999999999
Q ss_pred EEcCCCCcccCCCcc--ccceeeeecCCeEEEEcCCCCC
Q 004410 592 WNYSNQDKSSSRSKS--IWSCESFLSHNVSVAIPWVGLE 628 (755)
Q Consensus 592 Wd~~~~~~~~~~~~~--~~~~~~f~~~~~~va~~w~g~~ 628 (755)
||+.+.++..+..+- ......|...+..+|++-+-+.
T Consensus 259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred ccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhh
Confidence 999988755443332 2344566666777777766553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=230.39 Aligned_cols=279 Identities=19% Similarity=0.297 Sum_probs=228.2
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
|.+++|++|++||.|++|+......+.+.. ....++.|.+.|..+...-+|+.|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 566789999999999999987655443332 2356889999999999999999999999999999999865420
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE-cCCC-eE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW-SKNG-FL 402 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~~-~L 402 (755)
-.+.++..|...|.|+++ -++. .+
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 113456789999999999 6666 99
Q ss_pred EEEeCCCcEEEEeCCCC--eEEEEE----------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccC
Q 004410 403 LSSSADKTVRLWQVGID--RCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s~--~~~~~~----------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~ 469 (755)
++|+-|+.|.|||+.++ +.+..+ ++...|++++.++ .+..|++|+..+.|++||.++++.+ .+.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999977 233322 3778899999999 8899999999999999999987654 88899
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...|.++..++||..+++++.||+|++||+...+.+.++. .|...+++++.+| +-..+++|+.|+.|..-|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 9999999999999999999999999999999998887643 3566799999998 889999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+.+....... .....+|..+..+.+..-+-+++.|+.|+-|...-
T Consensus 284 l~n~~~~tli--ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 284 LRNPAKSTLI--CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cCCchhheEe--ecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 8875322222 44556677777665555557778889999997654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=202.83 Aligned_cols=270 Identities=23% Similarity=0.338 Sum_probs=210.1
Q ss_pred ccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 283 HEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 283 H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
-++.|.+|+||| ...+|+.++.|++||+|+++.....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------------------------ 63 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------------------------ 63 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------------------------
Confidence 467899999999 5667779999999999999763210
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCC
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD 440 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d 440 (755)
.+ .....|.++|++++|+.+| .+++|+.|+.+++||+.+++....-.|.++|.++.|-+ .
T Consensus 64 -----------------~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~ 124 (347)
T KOG0647|consen 64 -----------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-G 124 (347)
T ss_pred -----------------cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-C
Confidence 00 1234689999999999999 99999999999999999998888888999999999987 5
Q ss_pred CC--EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 441 DN--YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 441 ~~--~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
.. .|++|+.|.+|+.||.+....+......+.+.++.. -...+++++.+..|.+|+++++...... ....
T Consensus 125 ~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~------~~Sp 196 (347)
T KOG0647|consen 125 MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKR------IESP 196 (347)
T ss_pred CCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhh------hcCc
Confidence 55 899999999999999999999888888888888766 3458899999999999999876544221 1112
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc--eeeEEEeeecc-------CCceEEEEEecCCCEEEEEeCCCcE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV--VGKFKASAFRV-------AGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~-------~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
..-.+.+++..+ +....+.|+-+|.+.|..+... ...|.+..++. --.|++++|+|....|+|++.||++
T Consensus 197 Lk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 197 LKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 334678888888 6666799999999999887765 44444432332 2257889999999999999999999
Q ss_pred EEEEcCCCCcccC--CCccccceeeeecCCeEEEE
Q 004410 590 YIWNYSNQDKSSS--RSKSIWSCESFLSHNVSVAI 622 (755)
Q Consensus 590 ~iWd~~~~~~~~~--~~~~~~~~~~f~~~~~~va~ 622 (755)
.+||-+...++.. ......+|-.|...+...|.
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence 9999876654332 22233466667666655544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=199.54 Aligned_cols=232 Identities=22% Similarity=0.340 Sum_probs=201.6
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
++||+.+++.++++.+|.+|.+|+.|.++.||-..+|++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----------------------------------------- 44 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----------------------------------------- 44 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------------------------
Confidence 689999999999999999999999999999998767664
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEee
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp 438 (755)
+.++.||.+.|+++....+. ++++|+.|.+++|||+.+|+++..+.....|..+.|++
T Consensus 45 ---------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~ 103 (327)
T KOG0643|consen 45 ---------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF 103 (327)
T ss_pred ---------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc
Confidence 45678999999999999888 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCC-------Ce-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 439 VDDNYFISGSID-----GKVRIWEVRR-------CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 439 ~d~~~l~sgs~D-----g~V~iwdl~~-------~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
++++++....+ +.|.++|++. .. ......+...++.+-|.|-+++|++|..+|.|.+||++++...
T Consensus 104 -~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 104 -GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred -CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 88888776543 6799999983 23 4456667789999999999999999999999999999998664
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ....|...|+.++++| +..++++++.|.+-++||..+...... .....+|++++++|-..+++.|+.
T Consensus 183 v~-------s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kt---y~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 183 VD-------SDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKT---YTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ee-------chhhhccccccccccC-CcceEEecccCccceeeeccceeeEEE---eeecccccceecccccceEEecCC
Confidence 32 2345778999999999 999999999999999999988654444 335678999999999888887764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=209.00 Aligned_cols=267 Identities=19% Similarity=0.310 Sum_probs=212.2
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee---eeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER---LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+..|++++.+.+|+|||.++|||+.|..|+|.|++..-. ..++.....
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--------------------------- 158 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--------------------------- 158 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc---------------------------
Confidence 45678999999999999999999999999999999863211 000000000
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEEEecCCc
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVFSHNNY 430 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~~~h~~~ 430 (755)
+..-..+.++..|..+|+++.|+|.. .|++++.|++|+++|..... ..++|....+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 00012367889999999999999988 99999999999999987543 3455567889
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE----eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~----~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|.+|.|+| .|.+|+.|....++++||+.+.++.. -..|.+.|+++.|++.|++.++|+.||.|++||--+++++.
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 99999999999999999999988763 45688899999999999999999999999999998888765
Q ss_pred eeeEEecccccCC-CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC---CceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLP-GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA---GSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~-~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~v~~l~fspdg~~L~s 582 (755)
++. ..| +..|.+..|.. ++++|++.+.|..+++|.+.+..........+.. ..-+...|.....|++.
T Consensus 298 t~~-------~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 298 TIG-------NAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred HHH-------hhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc
Confidence 432 233 45789999999 9999999999999999999886655544323222 23456778888888887
Q ss_pred EeC-CCcEEEEEcCCCCcc
Q 004410 583 PSE-DSNIYIWNYSNQDKS 600 (755)
Q Consensus 583 gs~-Dg~I~iWd~~~~~~~ 600 (755)
-.+ .+.+.-||-.+..+.
T Consensus 370 pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRV 388 (430)
T ss_pred cccccCceeeccccchhhh
Confidence 654 467999999988743
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=221.28 Aligned_cols=257 Identities=18% Similarity=0.277 Sum_probs=198.0
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|+..|.++++.|.|..|+||+.|.+|++||++........
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------------------------ 205 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------------------------ 205 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------------------------
Confidence 47789999999999999999999999999999998654311000
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE------------
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------------ 425 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------------ 425 (755)
| +.+. ......|..++|++.+ .|++.+.....+|+|-...+.+...
T Consensus 206 ---------------f----r~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 206 ---------------F----RQLQ--PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ---------------h----hccC--cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 0 0011 1234478999999999 8888888889999997655444332
Q ss_pred -ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
+|...++|.+|+|.+...|++++.||++||||+...+ ++. ..+..-.++.++|+|||+.||+|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 2889999999999888899999999999999997642 222 22334568999999999999999999999999
Q ss_pred ECCCCeEeeeeeEEecccccCCCC--CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE-eeeccCCceEEEEEe
Q 004410 498 DIKDNQLYQQNQICLQGKKKLPGK--RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA-SAFRVAGSQMFATFT 574 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~~~~~~~~--~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fs 574 (755)
+...........+ ...|.. .|+++.|++ ++++|++-+.|+++++||++.....+.. ......-..+.++||
T Consensus 345 ~~~~~~v~p~~~v-----k~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRPVMKV-----KDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCcccccceEe-----eeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 9865544332222 334444 899999999 9999999999999999999876544322 113344567889999
Q ss_pred cCCCEEEEEeC------CCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSE------DSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~------Dg~I~iWd~~~~~ 598 (755)
|+.++|++|.. -|.+++||..+-+
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999864 5779999987765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=226.60 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=160.1
Q ss_pred ceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCe--------EEEEE-ecCCcEEEEEEeeCCCC-EEEEEe
Q 004410 381 LHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDR--------CLRVF-SHNNYVTSVAFNPVDDN-YFISGS 448 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~--------~~~~~-~h~~~V~~i~fsp~d~~-~l~sgs 448 (755)
+..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|++++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEEe
Confidence 5667899999999999996 4 99999999999999997642 22333 4899999999999 555 567999
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe-----
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI----- 523 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I----- 523 (755)
.|++|+|||+++++.+....+...|.+++|+|+|.+|++++.|+.|+|||++++..+..+. .|...+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v 217 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNI 217 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEE
Confidence 9999999999998876544567889999999999999999999999999999988765322 233332
Q ss_pred EEEEEcCCCCCEEEEEECCC----cEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 524 TGFQFSPSDPSKVIVTSADS----LVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg----~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....|++ ++.+|++++.|+ .|+|||+......... ....+.+.+......++|.++++|+.|+.|++|++..+.
T Consensus 218 ~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 218 WIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 3334567 778888888774 7999998864333222 112233444444445679999999999999999997664
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=222.04 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=234.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-----------CCEEEEEcCCCcEE
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-----------GQYLASGGEDGTVR 309 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-----------g~~LaSgs~Dg~I~ 309 (755)
+.|+|....|.+...|..++|||++...+.- ....+.-|...||.+.--|. ...++|++.|++||
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvg----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEecccccccc----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 6799999999999999999999987654322 22345679999999987661 13589999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++..+..-..+.........+ .+.. .+...-+.......+..+......+...
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~-----------ki~y--------------~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLS-----------KIPY--------------EDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred Eeecccccccceeecccchhhhh-----------cCcc--------------ccCchhhhhhccCCcccccchhhcCccc
Confidence 99997643211111100000000 0000 0000000000000111222333445567
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEE-
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVV- 464 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~- 464 (755)
.|.+++.+|++ +|++|..-|+|+||++..-+.+..+ .|...|.|+.|+.. ..++|++++.|..|.|||+...-.+
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 79999999999 9999999999999999887766655 59999999999742 3468999999999999998632100
Q ss_pred -EeccC-------------------------------------------------CcceEEEEEccCCCeEEEEeCCCcE
Q 004410 465 -DYTDI-------------------------------------------------REIVSAVCYCPDGKGGIVGTMTGNC 494 (755)
Q Consensus 465 -~~~~~-------------------------------------------------~~~V~~v~~spdg~~la~gs~dg~I 494 (755)
.+.+| +..+..++..|..+++++++.|..|
T Consensus 541 qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 541 QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred hhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 11111 2346677888888999999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
+|||+.+++....++- ...+.+....+...| .+.+|++...|.++.++|.....+..+. .+|...|+.+.|+
T Consensus 621 rif~i~sgKq~k~FKg-----s~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m--~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKG-----SRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQM--TGHSEAVTGVKFL 692 (1080)
T ss_pred EEEeccccceeeeecc-----cccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhh--cCcchheeeeeec
Confidence 9999999998765432 344667888999999 8999999999999999999887777766 8999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|.++|++.+.||.|.||.+....
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred ccchhheeecCCceEEEEECchhH
Confidence 999999999999999999998654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=221.21 Aligned_cols=348 Identities=18% Similarity=0.210 Sum_probs=246.8
Q ss_pred ccccccceeeeeccCcceeecCCCC---eeEEeeCCCeEEEEECCCCcccc--------------cccccc---------
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDH---ELTLGQRMRRVRVHPVKKQSREL--------------SSLYTG--------- 277 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~---~lasgs~dg~V~Vw~~~~~~~~~--------------~~~~~~--------- 277 (755)
-.+....+++|.|.+.+++|...+. +||+++.|..||||.+.....+- ..+...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3456677899999999999986655 88999999999999764322000 000011
Q ss_pred -eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC--eeeeeeecCCCC-----CceeEEeeCCCCceeEEeecC
Q 004410 278 -QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH--ERLDGFDVQDTD-----PSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 278 -~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 349 (755)
..+.||++.|.++.|+|.+..|++++.|.++.||.-.+. --+......... -....|.++.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----------- 328 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----------- 328 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-----------
Confidence 124599999999999999999999999999999987654 222222222211 1122222222
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEE--
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVF-- 425 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~-- 425 (755)
...+..+..+....|-.+. ...-.+...+.||...|.+++|.|.| +|++.+.|.+-||+-.-. .+.-..+
T Consensus 329 -----~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 329 -----NVIIAHGRTGGFHLWKTKD-KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred -----CEEEEecccCcEEEEeccC-ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 1112222223333333100 00012334567999999999999999 999999999999986541 1112222
Q ss_pred --ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-------------------------------------------
Q 004410 426 --SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR------------------------------------------- 460 (755)
Q Consensus 426 --~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~------------------------------------------- 460 (755)
.|...++|++|-+ ....|++|.....+|+|+...
T Consensus 403 PQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 2999999999987 678899999999999997641
Q ss_pred Ce----------------------------------EEEeccCCcceEEEEEccCCCeEEEEeCCCc-----EEEEECCC
Q 004410 461 CQ----------------------------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIKD 501 (755)
Q Consensus 461 ~~----------------------------------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-----I~iwD~~~ 501 (755)
+. +..+.+|...|.+++.+|+|+.+|+++.... |++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 00 0013456678999999999999999987543 89999988
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-eeEE-EeeeccCCceEEEEEecCCCE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV-GKFK-ASAFRVAGSQMFATFTSDGKH 579 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-~~~~-~~~~~~~~~v~~l~fspdg~~ 579 (755)
...++. ...|.-.|+.++|+| |+++|++.+.|.++.+|...+.. ..+. .....|...|.++.|+|++++
T Consensus 562 W~~~~~--------L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 562 WLQVQE--------LEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhhhe--------ecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 765542 345778999999999 99999999999999999865422 1111 113678889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~ 598 (755)
++|+|.|.+|++|......
T Consensus 633 FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEecCCceEEEEeccCch
Confidence 9999999999999998773
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=219.70 Aligned_cols=345 Identities=18% Similarity=0.259 Sum_probs=261.0
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
+.+++.-..+|++++|..||+ .||+|+..|.+-+||+++.... .+...+|.+.|..+.|-|....|+|++.|.
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~------~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI------NVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee------eeeeccccCCcccceecCCCceEeeccCCC
Confidence 333443346788899999998 6778888899999999876532 234568999999999999999999999999
Q ss_pred cEEEEEccCCe----eeeeeecCCCCCceeEEeeCCCCceeEEeecC-------------cceee---------------
Q 004410 307 TVRVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-------------EKIDK--------------- 354 (755)
Q Consensus 307 ~I~vWdv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~--------------- 354 (755)
.+++|=..++. .++.-..|..++.|+.|.......+....-+. .....
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 99998666443 34444566677777777644333222221111 00000
Q ss_pred ----------------------eeeeeecCCceEEEeCCcceeccCccc--eE-----ecCCCCCEEEEEEcCCC-eEEE
Q 004410 355 ----------------------TKSLRKSSDLTCVVLPPKVFRLLEKPL--HE-----FQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 355 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~gh~~~V~~l~~s~~~-~L~s 404 (755)
........+..+. +|+...+.+ +. ++.....+++++.++.| +.+.
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~-----tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY-----TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEE-----EEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 0000011111112 222222222 11 12233678999999999 7788
Q ss_pred EeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 405 SSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|+..|+|-+|++++|-....| .|..+|+.++... .++.+++++.+|.+.+||..++..+........++++.++.
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeee
Confidence 899999999999999999888 4999999999987 88899999999999999999999887777888999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
....++++..|-.|+++|+.+.+.... ...|+.+|++++|+| |+++|++++.|++|++||+.+....-.
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~--------f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~-- 613 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVRE--------FWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDG-- 613 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHH--------hhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeee--
Confidence 999999999999999999998887653 445889999999999 999999999999999999887544332
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcCC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYSN 596 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~~ 596 (755)
.....+.+++.|+|+|.+|||+..| .-|++|--..
T Consensus 614 -~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 614 -LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -EecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 3456788999999999999999999 6699997543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=217.65 Aligned_cols=278 Identities=20% Similarity=0.331 Sum_probs=229.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcc--cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
|-+++++...+.++||++ |.|+|||+..... .++.+. ......-|.++.+.|||+.|++|++-.++.|||+..
T Consensus 422 VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccc----ccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 444889999999999887 6799999875421 112221 223456799999999999999999999999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
....- ..++....-...+|+
T Consensus 497 pTpri------------------------------------------------------------kaeltssapaCyALa 516 (705)
T KOG0639|consen 497 PTPRI------------------------------------------------------------KAELTSSAPACYALA 516 (705)
T ss_pred CCcch------------------------------------------------------------hhhcCCcchhhhhhh
Confidence 53210 011222233456788
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcce
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V 473 (755)
.+||. ..+++..||.|.|||+.....++.|. |.+.+.||.+++ +|..|.+|+.|++||-||++.+..+...+....|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99998 77888899999999999999999995 999999999999 9999999999999999999999988888888999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
.++.++|++.+|++|-.++.+.|.........+ ...|..-|.++.|.+ -++++++.+.|+.+..|...-.
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccc
Confidence 999999999999999999999988887655432 234677899999999 9999999999999999998776
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
...|. .....+|.++.+|.|.+||+||+.|....||.+
T Consensus 666 asiFq---skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQ---SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceee---ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 66665 346679999999999999999999999888875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=223.49 Aligned_cols=240 Identities=21% Similarity=0.327 Sum_probs=206.7
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeec-ccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLA-HEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+.++++.|+++|.+||+|..+|.|.|||.....+ ...+.+ |...|-+++|. +..|.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 46688899999999999999999999999764432 234566 99999999997 778999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
...+.. ...+.+|...|..
T Consensus 288 R~~~~~-------------------------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 288 RISQHV-------------------------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred ecchhh-------------------------------------------------------------hhhhhcccceeee
Confidence 765421 1126789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEE--eCCCcEEEEEcCCCeEEEeccC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sg--s~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
++|++++ +|++|+.|+.+.|||......+..+ .|...|.+++|+|....+||+| +.|+.|++||..++..+.....
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9999999 9999999999999999766666665 6999999999999889999996 4799999999999999999999
Q ss_pred CcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 470 REIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
...|..|.|++..+.|++ |..++.|.||+..+.+.+.. ...|..+|..++++| |+..|++++.|.++++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~--------l~gH~~RVl~la~SP-dg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE--------LLGHTSRVLYLALSP-DGETIVTGAADETLRF 457 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee--------ecCCcceeEEEEECC-CCCEEEEecccCcEEe
Confidence 999999999999887777 55677899999988655432 455788999999999 8999999999999999
Q ss_pred EECCcc
Q 004410 548 LCGENV 553 (755)
Q Consensus 548 wd~~~~ 553 (755)
|+.-+.
T Consensus 458 w~~f~~ 463 (484)
T KOG0305|consen 458 WNLFDE 463 (484)
T ss_pred ccccCC
Confidence 997653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=214.62 Aligned_cols=256 Identities=20% Similarity=0.318 Sum_probs=205.4
Q ss_pred cccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
-|.+.|+.++.-|.. ..+|+.+..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 499999999999965 5777888899999999865432110000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-ecCCc
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-SHNNY 430 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~h~~~ 430 (755)
.-.|-..+.||...-.+|+|++.. .|++++.|++|++||+..... ...+ .|...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 013455788999988899999976 999999999999999975433 2233 49999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCC--CeEE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRR--CQVV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~--~~~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|..++|+|.+.++|++++.|+.+.|||+++ .+.. ....|...|.|++|+| ++..||+|+.|++|.+||+++.....
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 999999999999999999999999999995 3333 4677899999999999 67788999999999999999765421
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee------------EEEeeeccCCceEEEEEe
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK------------FKASAFRVAGSQMFATFT 574 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~------------~~~~~~~~~~~v~~l~fs 574 (755)
.....|...|..+.|+|.....|++++.|+.+.|||+...... +.+.-.+|...|..+.|.
T Consensus 310 -------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 310 -------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred -------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 1244578899999999998999999999999999997753322 123336899999999999
Q ss_pred cCCCE-EEEEeCCCcEEEEEcCC
Q 004410 575 SDGKH-VVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 575 pdg~~-L~sgs~Dg~I~iWd~~~ 596 (755)
|+..+ |++.++|+.+.||++..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 98876 67889999999999874
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=206.35 Aligned_cols=343 Identities=18% Similarity=0.189 Sum_probs=247.7
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.|.|++|.++|.. ++|..+|.|.||+..... ..+...+|.+.|.++..-.+|.+| +|+.|..|..|| ..-
T Consensus 248 ~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 248 FVLCVTFLENGDV-ITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNY 317 (626)
T ss_pred EEEEEEEcCCCCE-EeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccc
Confidence 4677999999985 789999999999974332 223344999999999999999755 599999999999 444
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.++....++..........+... ++.+.....++.- .+...-.....+|......++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~d----------------i~vGTtrN~iL~G-----t~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGD----------------ILVGTTRNFILQG-----TLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred cccccccCchhcCCeeEEecCCCc----------------EEEeeccceEEEe-----eecCCceEEEEecccceeeEEc
Confidence 455555554433222222222222 1111111111111 1111223456789999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEE
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~ 475 (755)
+|+. .+++++.|+.++||+ ..+++-......++.|+.|+| .+ .++.|+..|...+.|.++...++.....+++++
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV 452 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEE
Confidence 9998 999999999999999 666666666788999999999 77 999999999999999999888877666999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV- 554 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~- 554 (755)
+.|+|+|.+||+|+.|+.|+||-+..+...... . .+.++..|+.+.|++ |++++.+-+.|-.|..|......
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r----~--~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~ 525 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR----V--GKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQ 525 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE----e--eeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcc
Confidence 999999999999999999999998765443221 1 223448999999999 99999999999999999533211
Q ss_pred -------------ee--EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccCCCccccceeeeecCCeE
Q 004410 555 -------------GK--FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVS 619 (755)
Q Consensus 555 -------------~~--~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~ 619 (755)
+. |......+...|..++-+.+.+.+++|.+.|.|++|...-.+ .......+..+.+|...
T Consensus 526 ~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s----~rA~~he~~ghs~~vt~ 601 (626)
T KOG2106|consen 526 ITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS----PRAPSHEYGGHSSHVTN 601 (626)
T ss_pred cceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC----CcccceeeccccceeEE
Confidence 11 111112234456667778889999999999999999876433 22223344445566666
Q ss_pred EEEcCC
Q 004410 620 VAIPWV 625 (755)
Q Consensus 620 va~~w~ 625 (755)
|++.|.
T Consensus 602 V~Fl~~ 607 (626)
T KOG2106|consen 602 VAFLCK 607 (626)
T ss_pred EEEeeC
Confidence 777664
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=217.80 Aligned_cols=333 Identities=18% Similarity=0.230 Sum_probs=238.0
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I 308 (755)
.+.++.++++++.=+|--..+|.|..+|+|.|++++...... +++.-.+.|+.+.|..||+ .||+|+..|.+
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~-------sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM-------SFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE-------EEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 445556778888888999999999999999999988665422 2443359999999999997 56777778999
Q ss_pred EEEEccCCeeeeeee-cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEHERLDGFD-VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
-+||++..+....+. .+...+....|.+...- . ...+.|....+|--...+-....++.-.||
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV--l--------------~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH 333 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV--L--------------VTAGADNSLKVWVFDSGDGVPRLLRSRGGH 333 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCce--E--------------eeccCCCceeEEEeeCCCCcchheeeccCC
Confidence 999999888776655 33344443333333211 1 111111111111111111112223334455
Q ss_pred CCCEEEEEEc-CCC-eEEEEeCCCcEEEE---------------------------------------------------
Q 004410 388 SSEVLDLSWS-KNG-FLLSSSADKTVRLW--------------------------------------------------- 414 (755)
Q Consensus 388 ~~~V~~l~~s-~~~-~L~s~s~Dg~V~iW--------------------------------------------------- 414 (755)
..+..++.|. .++ .+++++.|++.+.+
T Consensus 334 s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N 413 (910)
T KOG1539|consen 334 SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN 413 (910)
T ss_pred CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence 5555555555 233 55555555554444
Q ss_pred --------------eCCCCeE-EEEEecC------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccC
Q 004410 415 --------------QVGIDRC-LRVFSHN------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDI 469 (755)
Q Consensus 415 --------------dl~s~~~-~~~~~h~------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~ 469 (755)
+.+.... ..++.+. ..+++++.++ .|++.+.|+..|.|-+|++.++..... ..|
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 4333322 2223333 6789999999 999999999999999999999987743 479
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
..+|+.++...-++.+++++.+|.+.+||..+..++.... -+..++++..+. ....++++..|-.|+++|
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---------l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---------LGSSITGIVYHR-VSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------cCCCcceeeeee-hhhhhhhhcCceeEEEEE
Confidence 9999999999888999999999999999999887654322 245778888887 778899999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+..-.... .+|...|++++|||||++|++++.|++|++||+.++.
T Consensus 563 ~~t~kvvR~f--~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 563 VVTRKVVREF--WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred chhhhhhHHh--hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 8875444333 6799999999999999999999999999999999987
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=219.32 Aligned_cols=278 Identities=20% Similarity=0.329 Sum_probs=220.9
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEE-EEEec-CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILT-MKFSL-DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~fsp-dg~~LaSgs~Dg~ 307 (755)
.+.+|...+..+++.+. ..++++++||+++||+-..... .....+.+|.+.|.+ +++-+ ++..|++|+.|++
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~-----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQY-----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCccc-----ccceecccCcceeeccceeccccCcceEeecccce
Confidence 45667766766665544 4788999999999999643322 122457789998888 88875 5567999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+|..... .|+..+.+|
T Consensus 83 i~v~~~~~~--------------------------------------------------------------~P~~~LkgH 100 (745)
T KOG0301|consen 83 IIVFKLSQA--------------------------------------------------------------EPLYTLKGH 100 (745)
T ss_pred EEEEecCCC--------------------------------------------------------------Cchhhhhcc
Confidence 999987544 356778999
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+.|.++....++.+++||.|.++++|-. +++...+ +|...|.+++.-| .+ .+++|+.|.+|++|.- ......+
T Consensus 101 ~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~-~~~l~tf 175 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG-GTLLKTF 175 (745)
T ss_pred ccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC-Cchhhhh
Confidence 99999999888889999999999999965 3444445 5999999999998 44 8999999999999987 2233367
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.+|.+.|..+++-+++ .|++++.||.|++|++....+.. ...|..-|+++...+ +...+++++.|++++
T Consensus 176 ~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~---------~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLE---------MHGHTNFVYSISMAL-SDGLIVSTGEDRTLR 244 (745)
T ss_pred ccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeee---------eeccceEEEEEEecC-CCCeEEEecCCceEE
Confidence 8899999999998874 68899999999999995544432 445778899999777 789999999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
||+.....+.... ....|+++.+-++|. |++|+.||.||||....
T Consensus 245 iW~~~e~~q~I~l----PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 245 IWKKDECVQVITL----PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EeecCceEEEEec----CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9998844443332 334899999988887 77888999999999873
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=214.22 Aligned_cols=264 Identities=18% Similarity=0.272 Sum_probs=205.1
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCccccc---ccccceeeecccccEEEEEEecCC-CEEEEEcCCCcE
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELS---SLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTV 308 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~---~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I 308 (755)
|...|+-+..-|+.. ++|+++..+.|.|||+.+...... ...+.-.|.+|++.=..|.|++.. -+|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 345566677778776 667788899999999876543222 223344789999988899999953 589999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+....... ....+...+.+|.
T Consensus 203 ~lwdi~~~~~~~-------------------------------------------------------~~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 203 CLWDINAESKED-------------------------------------------------------KVVDPKTIFSGHE 227 (422)
T ss_pred EEEeccccccCC-------------------------------------------------------ccccceEEeecCC
Confidence 999996543210 0013456688999
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC--CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGI--DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s--~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
..|.+++|++-. .|++++.|+.+.|||+++ .++.+.. .|.+.|.|++|+|.++.+||+|+.|++|++||+|+-
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 999999999966 899999999999999995 4444444 499999999999999999999999999999999974
Q ss_pred eEEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeee------eeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQ------NQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~------~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
.+..+..|...|..|.|+|+ ...||+++.|+.+.+||+..-...+. .+..+.-....|...|..+.|+|..+.
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 34478899999999999995 56788899999999999974322211 000111123457788999999998888
Q ss_pred EEEEEECCCcEEEEECCc
Q 004410 535 KVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~ 552 (755)
.|++.+.|+.++||....
T Consensus 388 ~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEecCCceEEEeeccc
Confidence 999999999999998764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=199.63 Aligned_cols=331 Identities=18% Similarity=0.216 Sum_probs=257.5
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc-cccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
..+++..+.+..+.|+|.+..|+....-+.+..|+..++...-. ...+..+ +..|.||+|.++|. ++||..+|.
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~----~~~fek~ekk~Vl~v~F~engd-viTgDS~G~ 268 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR----QGIFEKREKKFVLCVTFLENGD-VITGDSGGN 268 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE----eeccccccceEEEEEEEcCCCC-EEeecCCce
Confidence 34555556677799999999888888889999999876542111 1112222 26799999999997 679999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.||+..+.+..+....++..+.++....++ .++.+..|..+..|+.....+.+. ++...
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-----------------tllSGgKDRki~~Wd~~y~k~r~~---elPe~ 328 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-----------------TLLSGGKDRKIILWDDNYRKLRET---ELPEQ 328 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCc-----------------cEeecCccceEEeccccccccccc---cCchh
Confidence 9999998887777766776666666554333 334577888888888544333222 22334
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
.+.|..++=... -|+.|...+.|.-=.++.+-.+.++.|.+....++.+| +.++|++++.|+.|++|+ ..++....
T Consensus 329 ~G~iRtv~e~~~-di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 329 FGPIRTVAEGKG-DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred cCCeeEEecCCC-cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEE
Confidence 566777664443 37788888888888889998899999999999999999 999999999999999999 55666556
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
....++.++.|+|.| .+|+|+..|...+.|..+..++.. .. .+.+++++.|+| ++.++++|+.|+.|+|
T Consensus 405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------HT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE--------Ee-cCCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 667889999999999 999999999999999999766542 11 267999999999 9999999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|.......++......+..+|+.+.||+|++||.+-+.|-.|..| .....+.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW-~~~~~~~ 525 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW-KPSECKQ 525 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE-ccccCcc
Confidence 998876666655444455899999999999999999999999999 4444433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=197.85 Aligned_cols=300 Identities=19% Similarity=0.300 Sum_probs=209.4
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee----eeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD----GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
..|++|.+.|++|+|+.||++|||++.|++|+||++.+..... ........+..+.|.++....++.+. ...++.
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCCEEE
Confidence 3578999999999999999999999999999999997643211 11223346667777777666555444 333322
Q ss_pred eeeeeeecCCce----EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c
Q 004410 354 KTKSLRKSSDLT----CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H 427 (755)
Q Consensus 354 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h 427 (755)
.... ....++. .+-|+. ++--..|.-.|..+-...++ +|++++.|.+|.||++. |+.+..+. .
T Consensus 159 vyk~-~K~~dG~~~~~~v~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 159 VYKL-VKKTDGSGSHHFVHIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEe-eecccCCCCcccccccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 2222 1111211 111111 11224577777777777777 99999999999999998 88877774 4
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC---CC------eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR---RC------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~---~~------~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
...-+..+++| +|+++++++..-.|++|.+- ++ ++..+.+|...|++++|+++...+++.+.||+++|||
T Consensus 228 q~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 228 QSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 45567788999 99999999999999999973 22 2346889999999999999999999999999999999
Q ss_pred CCCCeEeeeeeEEecc---cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 499 IKDNQLYQQNQICLQG---KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~---~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
+.-.....+....+.. .....+..-..+..+| .+..|++ +....++++..++....... ...|...|.+++|++
T Consensus 307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~-e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPEL-EDIHSTTISSISYSS 383 (420)
T ss_pred ccceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhH-HHhhcCceeeEEecC
Confidence 8743222111111110 0112233444899999 6665554 45678899987764332222 245889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 004410 576 DGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|+++++ |..+++..-
T Consensus 384 ~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CCcEEeeec-ceeeeeecC
Confidence 999999997 467777763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=204.71 Aligned_cols=275 Identities=14% Similarity=0.192 Sum_probs=199.7
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
+..+++++.|+.|++|+..+.. ..+.+..|. .+.+++|+|+|+.| ++++.++.|++||+.+++....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--- 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--- 69 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-------eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---
Confidence 3567889999999999976543 223444444 46789999999976 56778999999998776533211
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL- 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~- 403 (755)
..+. .+..++|+|++ .++
T Consensus 70 -----------------------------------------------------------~~~~-~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 70 -----------------------------------------------------------PSGP-DPELFALHPNGKILYI 89 (300)
T ss_pred -----------------------------------------------------------cCCC-CccEEEECCCCCEEEE
Confidence 1121 23567899998 554
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcCCCeEEEeccCCcceEEEEEccCC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVVDYTDIREIVSAVCYCPDG 482 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg 482 (755)
+++.++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|+|
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 44568999999999998888887666688999999 999999888775 4678899988776543444566889999999
Q ss_pred CeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcEEEEECCcceeeEEEe
Q 004410 483 KGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 483 ~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.|++++ .++.|++||+.+++..........+.. ........+.|+| +++++++ ...++.|.+||..+......
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~-- 244 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDY-- 244 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEE--
Confidence 9886654 589999999999876554332111100 0112345688999 6666544 45677899999876543322
Q ss_pred eeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
..+...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 245 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 245 -LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 2234578899999999999886 468999999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=228.51 Aligned_cols=256 Identities=21% Similarity=0.306 Sum_probs=212.0
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCC-----------CcccccccccceeeecccccEEEEEEec
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKK-----------QSRELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~-----------~~~~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
+++-++..|...+.|+.|+|||++||+|++|+.|.||.... +............+.+|.+.|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45566777888899999999999999999999999999873 1223334445667899999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.+||+++.|++|.||+..+.+.
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~-------------------------------------------------------- 163 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFEL-------------------------------------------------------- 163 (942)
T ss_pred CccEEEEecccceEEEEcccccee--------------------------------------------------------
Confidence 999999999999999999876643
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCEEEE
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~l~s 446 (755)
+..+.+|.+.|..+.|.|-| +|++-+.|++|+||++....+.+.+. ....+..+.|+| ||.+|++
T Consensus 164 ------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las 236 (942)
T KOG0973|consen 164 ------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLAS 236 (942)
T ss_pred ------eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecc
Confidence 45678999999999999999 99999999999999988777776663 456789999999 9999998
Q ss_pred EeC----CCcEEEEEcCCCeE-EEeccCCcceEEEEEccC-----CC------------eEEEEeCCCcEEEEECCCCeE
Q 004410 447 GSI----DGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPD-----GK------------GGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 447 gs~----Dg~V~iwdl~~~~~-~~~~~~~~~V~~v~~spd-----g~------------~la~gs~dg~I~iwD~~~~~~ 504 (755)
... -.++.|.+-.+.++ +.+.+|..++.++.|+|. .+ .+|+|+.|++|.||.....+.
T Consensus 237 ~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred hhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 642 23578888777664 478999999999999981 12 678899999999999976665
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+.. ........|.+++|+| ||..|++++.||+|.++....
T Consensus 317 l~v-------i~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 LFV-------IHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhh-------hhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcch
Confidence 432 2344568999999999 999999999999999998554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=206.01 Aligned_cols=264 Identities=19% Similarity=0.272 Sum_probs=214.7
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..|.-+|.+|+++||+.++++++.|++|.=|++.++.....+-... .+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev----------------------------- 186 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EV----------------------------- 186 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hh-----------------------------
Confidence 356799999999999999999999999999999999887442111000 00
Q ss_pred eecCCceEEEeCCcceeccCccceEe-cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVA 435 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~ 435 (755)
......++..- .+|...|.+++.++|| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++
T Consensus 187 ---------------~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 187 ---------------LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred ---------------hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeee
Confidence 00001111111 4899999999999999 99999999999999999999999984 999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|-. ..+.+++++.|.+|++|++.....+ .+.+|+..|..|....-++.+-+|+.|.++++|++.....+
T Consensus 252 fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--------- 321 (479)
T KOG0299|consen 252 FRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--------- 321 (479)
T ss_pred eec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------
Confidence 987 7888999999999999999987776 68999999999999999999999999999999999543322
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec----------cCCceEEEEEecCCCEEEEEe
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR----------VAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~v~~l~fspdg~~L~sgs 584 (755)
.+..+...+-+++|- +...+++|+.+|.|.+|++......+...... +...|++++..|...++++|+
T Consensus 322 ifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 322 IFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 133456789999998 56889999999999999988766655442111 123789999999999999999
Q ss_pred CCCcEEEEEcCCCCc
Q 004410 585 EDSNIYIWNYSNQDK 599 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~~ 599 (755)
.+|.|++|.+..+-+
T Consensus 400 ~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLR 414 (479)
T ss_pred CCCceEEEEecCCcc
Confidence 999999999998853
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=193.59 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=202.4
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
..|++.|..+...--|+.||||+.|++|+|+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 46999999999988999999999999999999866532
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEE
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSV 434 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i 434 (755)
.+++.++.||.++|..++|.. -| .|++++.||.|.||.-.+++-.+.. .|...|+++
T Consensus 46 -----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 46 -----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred -----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 134678899999999999976 45 9999999999999998888655444 399999999
Q ss_pred EEeeCC-CCEEEEEeCCCcEEEEEcCCC-eE---EEeccCCcceEEEEEccC---C-----------CeEEEEeCCCcEE
Q 004410 435 AFNPVD-DNYFISGSIDGKVRIWEVRRC-QV---VDYTDIREIVSAVCYCPD---G-----------KGGIVGTMTGNCR 495 (755)
Q Consensus 435 ~fsp~d-~~~l~sgs~Dg~V~iwdl~~~-~~---~~~~~~~~~V~~v~~spd---g-----------~~la~gs~dg~I~ 495 (755)
+|.|.+ +-.|++++.||+|.|.+.+.. .- .-...|.-.|++++|.|- | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999943 346889999999999998865 21 124568888999999995 5 6799999999999
Q ss_pred EEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcceeeEEEe-eeccCCceEEE
Q 004410 496 FYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP---SKVIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFA 571 (755)
Q Consensus 496 iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l 571 (755)
||+...+.-.. ......|...|..++|.|..+ ..|++++.||+|.||.........+.. +......+..+
T Consensus 189 iW~~~~~~w~~------e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 189 IWKFDSDSWKL------ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred eeecCCcchhh------hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 99998874322 222455778999999999543 589999999999999866432333222 13356679999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+||..|..|+.++.|+.|.+|.-+..
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999999999999999986543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-23 Score=222.00 Aligned_cols=291 Identities=17% Similarity=0.260 Sum_probs=226.6
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee---cccccEEEEEEec-CCCEEEEEcCCCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHEGSILTMKFSL-DGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWd 312 (755)
...+++..++-..++.++.. .++||.+........ +...+. .-.-.+..++|.. +.++|||++..|.|.+||
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~---~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK---CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc---eeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 34557788888887777664 577777664432221 111111 1112456678875 568999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+..... .+.+..|..|...|+
T Consensus 117 lnk~~r-----------------------------------------------------------nk~l~~f~EH~Rs~~ 137 (839)
T KOG0269|consen 117 LNKSIR-----------------------------------------------------------NKLLTVFNEHERSAN 137 (839)
T ss_pred cCcccc-----------------------------------------------------------chhhhHhhhhcccee
Confidence 864210 233556788999999
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eec
Q 004410 393 DLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYT 467 (755)
Q Consensus 393 ~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~ 467 (755)
++.|++.. +|++|+.||+|++||++..+...++. ....|..++|+|..+++|+++...|.|++||++..... ++.
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 99999977 99999999999999999988877774 77889999999999999999999999999999975433 688
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCcE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLV 545 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~I 545 (755)
.|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+......+ ....++..+.|-|.....|++++. |-.|
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eecceeeeeeeccCccchhhhhhccccceE
Confidence 9999999999999999999999999999999997665433222 134689999999977788888764 7889
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||+......+.. ...|...++.++|.. |-..|.+++.||.|..-.+++..
T Consensus 291 ~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 291 HVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99998865444433 267899999999955 45678899999999988887765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=193.58 Aligned_cols=251 Identities=19% Similarity=0.237 Sum_probs=199.9
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I 308 (755)
...|.+-+..+.+.-.|+.|||++.|++|||+..+.... .+...+|.||.++|+.++|.. -|.+||+++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 345677777788888999999999999999999876553 234567999999999999965 79999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.||.-..++- ...+....|.
T Consensus 83 IiWke~~g~w------------------------------------------------------------~k~~e~~~h~ 102 (299)
T KOG1332|consen 83 IIWKEENGRW------------------------------------------------------------TKAYEHAAHS 102 (299)
T ss_pred EEEecCCCch------------------------------------------------------------hhhhhhhhhc
Confidence 9999766632 1134567899
Q ss_pred CCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC--eEEEE--EecCCcEEEEEEeeCC--C-----------CEEEEEe
Q 004410 389 SEVLDLSWSKNG---FLLSSSADKTVRLWQVGID--RCLRV--FSHNNYVTSVAFNPVD--D-----------NYFISGS 448 (755)
Q Consensus 389 ~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~--~~~~~--~~h~~~V~~i~fsp~d--~-----------~~l~sgs 448 (755)
..|++++|.|.+ .|++++.||.|.|.+.+.. -.... +.|.-.|+++.|.|.. + ..|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 999999999977 8899999999999988754 22222 2499999999999831 2 5699999
Q ss_pred CCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 449 IDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
.|..|+||+....+-+ .+.+|.+.|..++|.|.- .+||+++.||+|.||-.+......+.. +. .....
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t--ll---~~f~~ 257 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT--LL---EEFPD 257 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc--cc---ccCCc
Confidence 9999999999986433 478999999999999953 579999999999999877322211111 11 11345
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..+.|++ .++.|++++.|+.|.+|.-.
T Consensus 258 ~~w~vSWS~-sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 258 VVWRVSWSL-SGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ceEEEEEec-cccEEEEecCCcEEEEEEeC
Confidence 789999999 89999999999999999743
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=200.60 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=200.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|.++...|....++||+.|..+.++|...++.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------------------------------- 253 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------------------------------- 253 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhh----------------------------------------------
Confidence 4578888888778899999999999999766542
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~ 442 (755)
+..+.||...|+.+.++++. .+++++.|..|+||.+....+.... .|..+|+.+..+| .+.
T Consensus 254 ----------------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 254 ----------------LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ----------------hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 55678999999999999999 8999999999999998766655444 5999999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccC---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
||++++.|++..+.|++++..+....+ .-.+++++|+|||..|.+|+.||.|+|||+..+.... +...|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 999999999999999999988754433 2458999999999999999999999999999887543 24558
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.++|..++|+- +|.+|++++.|+.|++||++......... ......+.+++|.+.|.||+.++.|=.|++++-
T Consensus 389 t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 389 TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 89999999999 99999999999999999999865333322 333347999999999999999988766666653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=181.48 Aligned_cols=248 Identities=21% Similarity=0.368 Sum_probs=199.0
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----CCEEEEEcC-CC
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASGGE-DG 306 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g~~LaSgs~-Dg 306 (755)
+.|+..+.|.+|+|+|.++|+|+.|.+|++...+........ ..-++.-|.+.|..|+|-.+ |.+|++++. |.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g--~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG--HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC--cceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 445677889999999999999999999999887654433322 22357789999999999653 567888764 55
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.+=|...| .+++.+.|
T Consensus 164 ~iy~tdc~~g--------------------------------------------------------------~~~~a~sg 181 (350)
T KOG0641|consen 164 KIYITDCGRG--------------------------------------------------------------QGFHALSG 181 (350)
T ss_pred eEEEeecCCC--------------------------------------------------------------CcceeecC
Confidence 5666565444 34667789
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
|++.|.++- +=++ .+++|+.|++|++||++-..++.++. ....|.++++.| .+++|++|-.|....+||
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYD 259 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEE
Confidence 999999874 3345 99999999999999999999998884 346799999999 999999999999999999
Q ss_pred cCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 458 VRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 458 l~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
++.++.+ .+..|...|.++.|+|...++++++.|..|++-|+... +..+..+... ..|...+..+.|+| ..--+
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv---~ehkdk~i~~rwh~-~d~sf 334 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVV---AEHKDKAIQCRWHP-QDFSF 334 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEE---EeccCceEEEEecC-cccee
Confidence 9999988 57788999999999999999999999999999999753 2222222222 23556788899999 56678
Q ss_pred EEEECCCcEEEEEC
Q 004410 537 IVTSADSLVRVLCG 550 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~ 550 (755)
++.+.|.++.+|-+
T Consensus 335 isssadkt~tlwa~ 348 (350)
T KOG0641|consen 335 ISSSADKTATLWAL 348 (350)
T ss_pred eeccCcceEEEecc
Confidence 88899999999965
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=216.76 Aligned_cols=248 Identities=21% Similarity=0.357 Sum_probs=206.7
Q ss_pred ccccEE---EEEEe-cCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 283 HEGSIL---TMKFS-LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 283 H~~~V~---~l~fs-pdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444444 44444 367889999999999999985432100
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--eEEEEEe-cCCcEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID--RCLRVFS-HNNYVTSV 434 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~--~~~~~~~-h~~~V~~i 434 (755)
....+..+..|...|.++....++ .|+++|.|-+|++|+...+ -|+.+++ |.++|.|+
T Consensus 62 ------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 62 ------------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred ------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 001145677899999999999888 9999999999999999877 5677774 99999999
Q ss_pred EE-eeCCCCEEEEEeCCCcEEEEEcCCCeE--E---------Eec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 435 AF-NPVDDNYFISGSIDGKVRIWEVRRCQV--V---------DYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 435 ~f-sp~d~~~l~sgs~Dg~V~iwdl~~~~~--~---------~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
++ .+ +..++++|+.|+.|.+||+.++.. + .+. ++...|.+++.++.|..|+.|+..+.+++||.++
T Consensus 124 a~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99 55 889999999999999999997621 1 122 6778899999999999999999999999999999
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
++.+.. ...|...|..+..++ |+..+++++.||+|++||+....+.... ..|...|+++..+|+-.+++
T Consensus 203 ~~kimk--------LrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~--~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 203 CKKIMK--------LRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATY--IVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ccceee--------eeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeE--EeccCceEEEeeCCCcceEE
Confidence 887643 235778899999999 9999999999999999999887777665 67888899999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+|+.||.|+.=|+.+..
T Consensus 272 sG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ecCCCCcEEecccCCch
Confidence 99999999999999865
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=203.98 Aligned_cols=290 Identities=14% Similarity=0.210 Sum_probs=224.1
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEcc
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVI 314 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~ 314 (755)
..++++.|+|.-.+|++++.|++++||.+...... ..|.+.--..+|.+..|.|+|. .+++++....++.||+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-----~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-----KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccCh-----hheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 45778999999999999999999999998765432 2344555567999999999998 99999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC-CCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~ 393 (755)
+.+... +..+.++. ..+..
T Consensus 289 ~ak~~k------------------------------------------------------------~~~~~g~e~~~~e~ 308 (514)
T KOG2055|consen 289 TAKVTK------------------------------------------------------------LKPPYGVEEKSMER 308 (514)
T ss_pred cccccc------------------------------------------------------------ccCCCCcccchhhe
Confidence 775321 11222332 23556
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
...++++ +|+..+..|.|.|....+++.+..+...+.|..++|+. ++..|++.+.+|.|.+||++...++......+.
T Consensus 309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred eEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence 7778888 99999999999999999999999999999999999998 899999999999999999999988854433443
Q ss_pred --eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCcEEEE
Q 004410 473 --VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSLVRVL 548 (755)
Q Consensus 473 --V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~I~iw 548 (755)
-+++|.+++|.+||+|+..|.|.|||..+...-...+ ++.. ...-...|+.++|+| +..+|+.++. +..+++.
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk-Pik~-~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK-PIKT-VDNLTTAITSLQFNH-DAQILAIASRVKKNALRLV 464 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC-chhh-hhhhheeeeeeeeCc-chhhhhhhhhccccceEEE
Confidence 4678888999999999999999999976532211000 0000 111235799999999 8898888775 6778887
Q ss_pred ECCcce--eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 549 CGENVV--GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 549 d~~~~~--~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+.... ..+... ...-+.|++++|||.|.||+.|.++|.|.+|.+.
T Consensus 465 HvPS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 465 HVPSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccceeeeccCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 755421 111111 2344679999999999999999999999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=219.49 Aligned_cols=236 Identities=19% Similarity=0.346 Sum_probs=202.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|...|.+..|. +.++++++.|.+|++|+..++..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------- 241 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------- 241 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE-------------------------------------------
Confidence 67788999998 568999999999999998777532
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVD 440 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d 440 (755)
...+.||.+.|.++++..-+ .|++|+.|+++++||+.+++|..++. |...|.++...+
T Consensus 242 ------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-- 301 (537)
T KOG0274|consen 242 ------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-- 301 (537)
T ss_pred ------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--
Confidence 23378999999999998744 99999999999999999999999996 999999999754
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 441 DNYFISGSIDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
.++++|+.|.+|++|++.++..+.... |..+|.++.++ +.++++|+.||+|++||+.+++++.. ...|
T Consensus 302 -~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------l~gH 370 (537)
T KOG0274|consen 302 -FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------LSGH 370 (537)
T ss_pred -ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------ecCC
Confidence 788999999999999999999997666 99999999996 88999999999999999998888764 3347
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+|+++.+.+ . ..+++|+.|+.|++||+.+. .+.... .+|...+..+. ..+++|++++.|+.|++||..+++
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTL--QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhh--cCCcccccccc--cccceeEeccccccEEEeecccCc
Confidence 89999998865 3 89999999999999999987 444444 66777775555 467899999999999999999988
Q ss_pred cc
Q 004410 599 KS 600 (755)
Q Consensus 599 ~~ 600 (755)
..
T Consensus 445 ~~ 446 (537)
T KOG0274|consen 445 CL 446 (537)
T ss_pred ee
Confidence 43
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=193.51 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=199.4
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC--EEEEE
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ--YLASG 302 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~--~LaSg 302 (755)
++++-.+..|...++++|+ ++.++|+|+.|.+|+|||..+..+ ...+..|.+.|+++.|.++-. .|++|
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeee
Confidence 4555566777777877775 589999999999999999876543 245778999999999999765 89999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|.+|++..... +.
T Consensus 104 sdDG~i~iw~~~~W~~--------------------------------------------------------------~~ 121 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWEL--------------------------------------------------------------LK 121 (362)
T ss_pred cCCCcEEEEEcCCeEE--------------------------------------------------------------ee
Confidence 9999999999865543 45
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.+.+|.+.|++++.+|.+ .-++.+.|+.+++||+-.|+.-........-+.+.|+| .|.+|+.+.. ..|-||.+.+.
T Consensus 122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~-~~i~i~q~d~A 199 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGR-NKIDIYQLDNA 199 (362)
T ss_pred eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEec-cEEEEEecccH
Confidence 678899999999999999 77789999999999999998877777666666799999 8888887765 56899999987
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE-cCCCCCEEEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF-SPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f-sp~d~~~l~s~s 540 (755)
.+.........+.++.|. ++..|++|..++.|.+||..+...... ...|..+|-++.+ ...++.+|++++
T Consensus 200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~--------~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 200 SVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE--------FLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred hHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee--------eecchhheeeeEEEecCCceEEEEec
Confidence 776544445566676664 567899999999999999998554432 4457889999884 322678999999
Q ss_pred CCCcEEEEECCcc
Q 004410 541 ADSLVRVLCGENV 553 (755)
Q Consensus 541 ~Dg~I~iwd~~~~ 553 (755)
.||.|+|||+...
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 9999999998753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=194.51 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=161.8
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+..+.+|...|++++|+.|| +|++++.|++|+||+++.. ++++.--.-+..+.+.|.|+...++++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999 9999999999999998753 22322223346789999994445556666667899
Q ss_pred EEEcCCCe-------EEEe------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 455 IWEVRRCQ-------VVDY------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 455 iwdl~~~~-------~~~~------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+|-+...+ .+.+ ..|.-.+..+-...++++|++++.|..|.+|+++ |+++.. ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee--------eccccc
Confidence 99876432 1111 2344456667777789999999999999999999 555543 222344
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC--------cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE--------NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~--------~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.-+..+.+| ++++|++++..-.|+||..- .....+ .+.+|...|+.++|+++...+++.+.||+++|||
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf--~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF--SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhh--eeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 567789999 99999999999999999832 122233 3478999999999999999999999999999999
Q ss_pred cCCCCcccCCCccc
Q 004410 594 YSNQDKSSSRSKSI 607 (755)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (755)
++-.....+.++.+
T Consensus 307 tdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 307 TDVRYEAGQDPKIL 320 (420)
T ss_pred ccceEecCCCchHh
Confidence 97655444444433
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=213.81 Aligned_cols=254 Identities=19% Similarity=0.300 Sum_probs=207.6
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|+..-+.|+|.|+|.+|++++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 46899999999999999999999999999998754410
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~ 439 (755)
.| ..+.-|...|.+++...+ +|++++.+++|.+|...+++.-..+ ...-++++++|+.
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 011115566766664433 8999999999999999888776555 4677899999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE-EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~-~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
+|++++.|+.|-.|++.++.+... ..+.+|..+|.++.|+|++++||+.+.||.|+|||+.++.+..............
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 999999999999999999987654 4789999999999999999999999999999999999887765433221111112
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....++.++|+| ++..+++...|+.|.+|+.......+......+...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 245678899999 7788888899999999999998888877656666679999999999999999999999999999754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=204.37 Aligned_cols=228 Identities=22% Similarity=0.308 Sum_probs=191.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+++-+|.|.+|+.|+..|.+++|.+.++. +...+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 3557889999999999999999999999977654 233468899999999999999999999999999999874
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+--. ... +...+|++.+..|.-.|+++
T Consensus 154 ~lv~-----------------------------------------a~~------------~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 154 DLVS-----------------------------------------ADN------------DHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred eecc-----------------------------------------ccc------------CCCccceeeeccCcceeEEE
Confidence 3210 000 00246789999999999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---------
Q 004410 395 SWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--------- 462 (755)
Q Consensus 395 ~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--------- 462 (755)
...+.+ +|++++.|.++++||+..+..+..+.....+++++.+| .++.++.|+.+|.|.+.++.+..
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccccc
Confidence 998765 99999999999999999999999999999999999999 89999999999999998875321
Q ss_pred --------EEEeccCCc--ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 463 --------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 463 --------~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
...+.+|.. .|+|++++-||..|++|+.||.++|||+.+.+++..... ..++|+.+++.|-
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~--------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT--------SKGPVTNLQINPL 330 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh--------hccccceeEeecc
Confidence 223567777 899999999999999999999999999999887764321 3468899999773
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=186.71 Aligned_cols=294 Identities=16% Similarity=0.182 Sum_probs=211.7
Q ss_pred eeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCccccccccc--------ceeeecccccEEEEEEec-CCCEEEE
Q 004410 232 ARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYT--------GQEFLAHEGSILTMKFSL-DGQYLAS 301 (755)
Q Consensus 232 ~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~--------~~~l~~H~~~V~~l~fsp-dg~~LaS 301 (755)
..|...|+++.+.+. |+++++|+.||.|.|||++........... .+.-.+|+-.|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 345577888888775 779999999999999998754421111111 122347889999999999 6678899
Q ss_pred EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
++-|.+++|||..+-+....|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------------------------------- 141 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------------------------------- 141 (397)
T ss_pred ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence 9999999999998876443332
Q ss_pred eEecCCCCCEEEEEEcCCC----eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~----~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
-.+.|..-+|+|-. ++++|..|-.|++.|+.+|.+..++ +|.+.|.++.|+|...-.|++|+.||.|++|
T Consensus 142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 22345555666632 6788889999999999999999999 4999999999999666678999999999999
Q ss_pred EcCCC--eEE--------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 457 EVRRC--QVV--------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 457 dl~~~--~~~--------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++.. ... .-..|.+.|..++|+.+|.++++++.|..+++|+...|................ .
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~ 295 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-S 295 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-c
Confidence 99853 111 133466789999999999999999999999999999876543211111000000 0
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
-.+. ++ +- +...++.--.++.+.++.+-........ ..|-..|.+.++.|+=+...+|..|+.|+.|-.
T Consensus 296 ~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l--~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 296 FAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRL--STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEee--ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111 12 11 3333444444566777766554433333 556778999999999999999999999999986
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=190.27 Aligned_cols=248 Identities=17% Similarity=0.305 Sum_probs=210.2
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.++|.||++.||.++-......+.+++.|.+.+||.++++.+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------------------------------------- 182 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------------------------------------- 182 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--------------------------------------
Confidence 356889999999999987778999999999999999998875
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC------CC-----------
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV------GI----------- 418 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl------~s----------- 418 (755)
+.++.||.+.|++++|++.+ ++++++.|++..||.. .+
T Consensus 183 ------------------------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 183 ------------------------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ------------------------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 34567999999999999999 8999999999999962 11
Q ss_pred -------------------C----eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcce
Q 004410 419 -------------------D----RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIV 473 (755)
Q Consensus 419 -------------------~----~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V 473 (755)
+ .++..+ +|...|.+..|.. .++.+++++.|.+..+||++++.++ .+.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 0 111222 3888999999998 9999999999999999999999998 578899999
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
+.++-+|..+++++.+.|-+.++||++.. ++.. .....|...|+++.|.. +..+++|+.|.+|+|||+.+.
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV-----~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSV-----AVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhh--ccee-----eeecccccceeEEEEec--CCceeecCCCceEEEeeeccc
Confidence 99999999999999999999999999832 2211 12445778999999986 467999999999999999987
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+.. .....+++.++.+..+..|+.--.+..|++||++..+
T Consensus 389 RsplAT--IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 389 RSPLAT--IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cCccee--eecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 766655 6677889999999888899999888999999998765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-22 Score=198.97 Aligned_cols=242 Identities=17% Similarity=0.272 Sum_probs=203.4
Q ss_pred eeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--------------------------------------- 101 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--------------------------------------- 101 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------------------------
Confidence 358899999999999976 7899999999999999976543
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEe
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fs 437 (755)
+.++..|.+.|..|++.. +.+++++.|++|+.|-+.. ..++++.....+..|.-+
T Consensus 102 -----------------------~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 102 -----------------------IRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHH 156 (433)
T ss_pred -----------------------hheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeeccccccccccc
Confidence 455678999999999987 6789999999999998865 477777777888888887
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
. .++.|++++. .|-|||......+ .+.-....|.++.|+|.. ..|+++..|+.|.+||++.+..+....+.
T Consensus 157 ~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 157 R-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred c-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 7 7888999874 5999999766555 455566789999999965 45666779999999999999887654432
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+-+.++|+| ..-.++++..|..++.+|+..+....... .+|...|+++.|+|.|+-+++||.|.+|+||.++
T Consensus 230 -----mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~-~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 230 -----MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH-KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred -----ccccceecCc-cccceeeccccccceehhhhhhcccchhh-cccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3457899999 88899999999999999998876555442 6788999999999999999999999999999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
.+.
T Consensus 303 ~~~ 305 (433)
T KOG0268|consen 303 HGH 305 (433)
T ss_pred CCc
Confidence 876
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=186.49 Aligned_cols=262 Identities=17% Similarity=0.212 Sum_probs=197.5
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVR 309 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~ 309 (755)
.+|.|-+.++.|.+.|+.+|+++.|++|+|||..+.. .+..+....++|.+.|+.+.|.+ -|+.+|+++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 4567888899999999999999999999999975433 34445567899999999999965 589999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||.=.... +..+.. .-....++....+
T Consensus 87 iWEE~~~~----~~~~~~-------------------------------------------------~Wv~~ttl~Dsrs 113 (361)
T KOG2445|consen 87 IWEEQEKS----EEAHGR-------------------------------------------------RWVRRTTLVDSRS 113 (361)
T ss_pred eeeecccc----cccccc-------------------------------------------------eeEEEEEeecCCc
Confidence 99743111 000000 0012345666788
Q ss_pred CEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC------eEEEEEe--------cCCcEEEEEEeeC--CCCEEEEEeCC
Q 004410 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGID------RCLRVFS--------HNNYVTSVAFNPV--DDNYFISGSID 450 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~------~~~~~~~--------h~~~V~~i~fsp~--d~~~l~sgs~D 450 (755)
.|++++|.|.. .|++++.||+||||++-.- .+...++ +.....|+.|+|. ...+|+.|+.+
T Consensus 114 sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 114 SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE 193 (361)
T ss_pred ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc
Confidence 99999999964 8999999999999986432 2222222 6667889999982 34578888766
Q ss_pred -----CcEEEEEcCCCe--EE---EeccCCcceEEEEEccC----CCeEEEEeCCCcEEEEECCCC------------eE
Q 004410 451 -----GKVRIWEVRRCQ--VV---DYTDIREIVSAVCYCPD----GKGGIVGTMTGNCRFYDIKDN------------QL 504 (755)
Q Consensus 451 -----g~V~iwdl~~~~--~~---~~~~~~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~~~------------~~ 504 (755)
+.+.||...... .. .+.++..+|+.|+|.|+ -..||+++.|| |+||.+... ..
T Consensus 194 ~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~ 272 (361)
T KOG2445|consen 194 DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL 272 (361)
T ss_pred CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence 589999876432 22 57789999999999995 35789999999 999998742 12
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
...+++........|...|..+.|+- .+..|.+++.||.||+|...
T Consensus 273 ~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 273 MTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 22334444445667889999999998 88999999999999999854
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=202.51 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=207.3
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.++||.+.++|.|.+++.....-.+.. .......+|.++|..++|-|....|++++.|.++++||+.+.+...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------ 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------ 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec------
Confidence 458999999999999998754433211 1124567899999999999966789999999999999998876431
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s 404 (755)
...+.||.+.|.+++|.+.+ .|++
T Consensus 137 ------------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 137 ------------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ------------------------------------------------------ceeecccccccchhhhccCCCcceee
Confidence 12357899999999999988 8999
Q ss_pred EeCCCcEEEEeCCCCe--------------------EEEEE--------ecCCcEEE---EEEeeCCCCEEEEEeC-CCc
Q 004410 405 SSADKTVRLWQVGIDR--------------------CLRVF--------SHNNYVTS---VAFNPVDDNYFISGSI-DGK 452 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~--------------------~~~~~--------~h~~~V~~---i~fsp~d~~~l~sgs~-Dg~ 452 (755)
|+.||.|.|||++... ..+.. .+...|.+ +.+.. |...||+++. |+.
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~ 241 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADST 241 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcc
Confidence 9999999999986432 00000 13333443 33444 8889999887 999
Q ss_pred EEEEEcCCCeEEE---------eccC---CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 453 VRIWEVRRCQVVD---------YTDI---REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 453 V~iwdl~~~~~~~---------~~~~---~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|+|||+++..... +..+ .-.+++++....|.+|++.+.|+.|++|++.+...-.... +.++ ..
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~--~sg~---~~ 316 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE--FSGK---LN 316 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh--ccCc---cc
Confidence 9999999754331 1222 2357888888889999999999999999998654321111 1110 01
Q ss_pred CCe-EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCC
Q 004410 521 KRI-TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 521 ~~I-~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+ ..-..+| ++.++++|+.|....+|.+.+....... +.+|.-.|++++|.|.. .-++++++|..++||++.++-
T Consensus 317 ~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~-l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 317 SSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPAL-LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhh-hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 111 2234577 8999999999999999998876554433 26799999999997743 347777999999999997765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=194.58 Aligned_cols=306 Identities=22% Similarity=0.330 Sum_probs=212.6
Q ss_pred ceeecCCCCeeEEeeCC---CeEEEEECCCCcccccccccceeeecccccEEEEEEec-------CCCEEEEEcCCCcEE
Q 004410 240 SATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-------DGQYLASGGEDGTVR 309 (755)
Q Consensus 240 ~~~~spdg~~lasgs~d---g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-------dg~~LaSgs~Dg~I~ 309 (755)
...+-|+.++++++-.. ..+-||-++... ..+|..+.+.- ...-.|++|.. -|+|+|.|+.|-.|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 36677888877776442 334444443222 23332221111 12235677743 268999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.-...+.. ++. +.....+. .....+.-..-.+|+.
T Consensus 206 IWDLDI~d~v~P---------~~~-----------LGs~~sk~---------------------~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 206 IWDLDIVDAVLP---------CVT-----------LGSKASKK---------------------KKKKGKRSNSASGHTD 244 (463)
T ss_pred Eecccccccccc---------cee-----------echhhhhh---------------------hhhhcccccccccchH
Confidence 999853321100 000 00000000 0000111223458999
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
.|.+|+|+..- .|++|+.|.+|++||+.++++..++. |.+.|.+++|+|....+|++|+.|++|.+.|.+..... .
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 99999999866 89999999999999999999999997 89999999999999999999999999999999953222 2
Q ss_pred eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....+.|-.++|.|.. ..+++++.||+|+-+|++.. +.+.+ .+.|...|.++++++..+.++++++.|+
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt--------~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT--------LKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE--------EEeccCCcceEEecCCCCcceeeccccc
Confidence 33355778999999954 56788899999999999976 44433 3457889999999999999999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++|+.............-.-+...+.++.|+-. +++.|+..+.++|||+.+..
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999977644433221111223456667777654 46778888889999998876
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=177.59 Aligned_cols=215 Identities=25% Similarity=0.400 Sum_probs=171.1
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
++.+.++..+...|..++|.... .++.++. |.+||..++.+.+.++.| +|...|+.|..+| -++.|++++.|++|
T Consensus 46 g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tv 124 (311)
T KOG1446|consen 46 GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTV 124 (311)
T ss_pred CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeE
Confidence 45567777777788888887655 6666665 899999999999999999 5999999999999 67999999999999
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE--eeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL--YQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~--~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
++||++..++........ -..++|.|.|-.+|++...+.|++||++.-.. ...+.+ ........+.+.|+|
T Consensus 125 rLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-----~~~~~~ew~~l~FS~- 197 (311)
T KOG1446|consen 125 RLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI-----TDNDEAEWTDLEFSP- 197 (311)
T ss_pred EeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-----CCCCccceeeeEEcC-
Confidence 999999777664443332 24579999999999999888999999996432 222221 113457899999999
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCC-ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAG-SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
+|+.|+.+...+.+++.|.-++..+.......... --..++|+||+++|++|+.||+|.+|+++++.+.
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 99999999999999999988765444443233333 2267899999999999999999999999998743
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=214.90 Aligned_cols=256 Identities=25% Similarity=0.432 Sum_probs=215.1
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
|...+++.+-..-.++||+.+ ++.+|...|.++..-..++.+++|+.|..+-+|.+....
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------- 61 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------- 61 (825)
T ss_pred Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------
Confidence 334455555566667788753 356799999999987788999999999999999874332
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
++..+.+|..+|.++.|+... .|+
T Consensus 62 -------------------------------------------------------~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 62 -------------------------------------------------------AITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred -------------------------------------------------------hhheeeccCCcceeeecCcchhhhc
Confidence 133478999999999999988 899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPD 481 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spd 481 (755)
+|+.+|+|++||+...+.++++ .|...+..++|+| -+.++++|+.|+.+++||++..-+. .+..|...+..+.|+|+
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC
Confidence 9999999999999999988887 5999999999999 8999999999999999999955555 56678888999999999
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 561 (755)
|++++.|+.|..++|||+..+++..+ .+.|...+..+.|+| ..-+++.|+.|.+|++||+.+....-..
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~e--------f~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~-- 234 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKE--------FKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSG-- 234 (825)
T ss_pred CceeeccCCcceeeeecccccccccc--------cccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeecc--
Confidence 99999999999999999999987754 345778899999999 8889999999999999999875444333
Q ss_pred eccCCceEEEEEecCCCEEEEEeCCC
Q 004410 562 FRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 562 ~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
......|.++.|.|+++.+++|..+.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 44577899999999999999887653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=177.48 Aligned_cols=252 Identities=18% Similarity=0.264 Sum_probs=186.8
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|.+-|.++.|.+.|+.+|||+.|++|+|||.....-..
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4799999999999999999999999999999974432110
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCC-------Ce--EEEEE-ec
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGI-------DR--CLRVF-SH 427 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s-------~~--~~~~~-~h 427 (755)
......+.|.+.|..+.|.+-. .+++++.|++|.||.-.. .+ ...++ ..
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 0123457799999999997643 899999999999996421 11 12222 36
Q ss_pred CCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE-E-------------eccCCcceEEEEEcc---CCCeEEEEe
Q 004410 428 NNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV-D-------------YTDIREIVSAVCYCP---DGKGGIVGT 489 (755)
Q Consensus 428 ~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~-~-------------~~~~~~~V~~v~~sp---dg~~la~gs 489 (755)
...|+.|+|.|. -|-.|++++.||.||||+...---+ + ...+...-.|+.|+| ...+||+|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 788999999993 3557899999999999998653211 1 112455678899998 457889988
Q ss_pred CC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcc--------
Q 004410 490 MT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP---SKVIVTSADSLVRVLCGENV-------- 553 (755)
Q Consensus 490 ~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~-------- 553 (755)
.+ +.++||....+....... .....+..+|++++|.|.-+ .+|++++.|| |+||.+...
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 76 578888766544221111 11235778999999999644 4789999999 999986631
Q ss_pred ----------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 554 ----------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 554 ----------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..........|.+.|..+.|.-.|..|++.|.||.|++|..+
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112223346789999999999999999999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=180.89 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=202.3
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
-.|+.|++.|.+||.|+.||+|.|||+.+ +...+.+.+|..+|.+++||+||+.|+|++.|..|++||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 45689999999999999999999999654 44567789999999999999999999999999999999998887
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.++.+. ..++|+.+.|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 554432 34567777787
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCCe--EEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC-
Q 004410 398 KNG--FLLSSSADKTVRLWQVGIDR--CLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI- 469 (755)
Q Consensus 398 ~~~--~L~s~s~Dg~V~iWdl~s~~--~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~- 469 (755)
|.. ..++.-++..-.+-++...+ ++..-. .+..-.+..|.+ .|+++++|...|.+.++|..+.+++.....
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 755 44444444444444444321 111111 112223346787 999999999999999999999998853332
Q ss_pred -CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee-eeeEEecccc--cCCCCCeEEEEEcCCCCCEEEEEE-CCCc
Q 004410 470 -REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQGKK--KLPGKRITGFQFSPSDPSKVIVTS-ADSL 544 (755)
Q Consensus 470 -~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-~~~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~ 544 (755)
...|..+.++..|..|++-+.|..|+.|+++.-.... ........+. -.....-.+++|+. ++.+++.++ ....
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 3578999999999999999999999999987321110 0000000000 01223456788888 777777665 4567
Q ss_pred EEEEECCcceeeEEEeeeccC-CceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVA-GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~-~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++||....+...... .+.. .....+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKIL--hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKIL--HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeee--cCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 999986654333222 3444 456788999998888887 77899999987655
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=190.06 Aligned_cols=296 Identities=17% Similarity=0.249 Sum_probs=214.8
Q ss_pred ceeeeeccCcceeecCCCC--eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCC
Q 004410 230 AMARIIDRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDG 306 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~--~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg 306 (755)
..+-+..++.+++|+|... ++|+|..-|.|-+|++....+..... -.+..|.++|.+|.|+|. ...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---YLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---EEeccCCccccceEecCCChhheeeeccCc
Confidence 3445567889999999875 88999999999999997444443333 236789999999999994 56888999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|++-|++....-. +..+..
T Consensus 258 tiR~~D~~~~i~e~------------------------------------------------------------v~s~~~ 277 (498)
T KOG4328|consen 258 TIRLQDFEGNISEE------------------------------------------------------------VLSLDT 277 (498)
T ss_pred eeeeeeecchhhHH------------------------------------------------------------HhhcCc
Confidence 99999987653110 111111
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-- 461 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-- 461 (755)
....+..+.|+.+. .++++..=|...+||++++.. ...+ -|...|+.|+++|....+|++++.|++++|||++.-
T Consensus 278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcC
Confidence 23345667777766 777777778999999988765 2222 388899999999999999999999999999999852
Q ss_pred ---eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC----CCeEeeeeeEEecccccCCCCC--eEEEEEcCCC
Q 004410 462 ---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK----DNQLYQQNQICLQGKKKLPGKR--ITGFQFSPSD 532 (755)
Q Consensus 462 ---~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~----~~~~~~~~~~~~~~~~~~~~~~--I~~v~fsp~d 532 (755)
..+....|...|.++.|+|.+-.|++.+.|..|+|||.. .-....+ + .+...++.. .....|.| +
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~--I---~Hn~~t~RwlT~fKA~W~P-~ 431 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT--I---PHNNRTGRWLTPFKAAWDP-D 431 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce--e---eccCcccccccchhheeCC-C
Confidence 146778899999999999988789999999999999984 1111111 1 111122233 33468999 8
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceE-EEEEecCCCEEEEE-eCCCcEEEEEcC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQM-FATFTSDGKHVVSP-SEDSNIYIWNYS 595 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~-~l~fspdg~~L~sg-s~Dg~I~iWd~~ 595 (755)
..+|++|-.-..|-|+|........... ......|. -..|+|-+..+++| +.-|.|+||--+
T Consensus 432 ~~li~vg~~~r~IDv~~~~~~q~v~el~-~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 432 YNLIVVGRYPRPIDVFDGNGGQMVCELH-DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccEEEEeccCcceeEEcCCCCEEeeecc-CccccccccceeecccccceeccCCccceEEEEecC
Confidence 9999999999999999987655444331 11222333 35799988855554 567888888644
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=198.50 Aligned_cols=276 Identities=16% Similarity=0.235 Sum_probs=214.3
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.|......+++.|+|.+|.+++.||.|++|+......+.. .+.-|...|.+++- ++.+|++|+.+++|.+|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEee--cccceEEeeccceEEEee
Confidence 3455666799999999999999999999999765432221 22237778888876 456999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+++.-. .+...+-++.
T Consensus 83 fps~~~~~--------------------------------------------------------------iL~Rftlp~r 100 (933)
T KOG1274|consen 83 FPSGEEDT--------------------------------------------------------------ILARFTLPIR 100 (933)
T ss_pred CCCCCccc--------------------------------------------------------------eeeeeeccce
Confidence 87764210 0112345688
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-ecc-
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD- 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~- 468 (755)
+++|+.+| +++.|+.|-.|++-++......+.+ +|.++|.++.|+| .+++||+.+.||+|++||+.++.+.. +.+
T Consensus 101 ~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 101 DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 99999999 9999999999999999887777777 5999999999999 99999999999999999999887652 111
Q ss_pred -------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 469 -------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 469 -------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....+..++|+|+|..+++...|+.|++|+..+......+. . +.+...+..++|+| .|.+||+++.
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr----~--~~~ss~~~~~~wsP-nG~YiAAs~~ 252 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR----D--KLSSSKFSDLQWSP-NGKYIAASTL 252 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec----c--cccccceEEEEEcC-CCcEEeeecc
Confidence 13457889999998889999999999999999988765432 1 22334499999999 8999999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
||.|.|||..+... ......|++++|.|++.-|-.-..-|...+|
T Consensus 253 ~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 DGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999887211 2234678999999988766544444443333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=185.21 Aligned_cols=259 Identities=23% Similarity=0.303 Sum_probs=197.2
Q ss_pred eeecccccEEEEEEecCC--CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 279 EFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
...+|.+.|+.+.-++-| .+.|+-++.|.|+||++...-. .+......
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~~~~~~---------------------------- 195 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALSEPGLE---------------------------- 195 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhcCcccc----------------------------
Confidence 345788999998888754 5777778899999999854311 11100000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--CeEEEEeCCCcEEEEeCCCCeEEEE----EecCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--GFLLSSSADKTVRLWQVGIDRCLRV----FSHNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~~L~s~s~Dg~V~iWdl~s~~~~~~----~~h~~~ 430 (755)
......+|+.++.+|...=+.|+|||- |.|++|..-+.|++|...++....- ..|+..
T Consensus 196 ----------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S 259 (440)
T KOG0302|consen 196 ----------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS 259 (440)
T ss_pred ----------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccc
Confidence 000224789999999999999999994 4899999999999999988755322 249999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|-.|+|+|.....|++|+-||+|+|||++.+ .++....|...|+.|.|+.+-.+||+|+.||+++|||++.-+.-+.
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 9999999988899999999999999999987 5667788999999999999888999999999999999997554321
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------e----EEEeeecc--CCceEEE
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG----------K----FKASAFRV--AGSQMFA 571 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~----------~----~~~~~~~~--~~~v~~l 571 (755)
....+.|..+|+++.|+|.+...|++++.|.+|.|||+.-... . ....++-| ...+..+
T Consensus 340 -----VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kev 414 (440)
T KOG0302|consen 340 -----VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEV 414 (440)
T ss_pred -----ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhh
Confidence 1124557899999999999999999999999999999653111 0 00011223 3456778
Q ss_pred EEecCC-CEEEEEeCCCc
Q 004410 572 TFTSDG-KHVVSPSEDSN 588 (755)
Q Consensus 572 ~fspdg-~~L~sgs~Dg~ 588 (755)
.|++.- .+|++.+.||.
T Consensus 415 hWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 415 HWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eeccCCCCeEEEecccce
Confidence 888763 47888888864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-19 Score=188.82 Aligned_cols=284 Identities=15% Similarity=0.234 Sum_probs=227.4
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc-cccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH-EGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
+......+.++|++.+.+.||.+-.+|.|.||++.... ++...+.+| ...|.+++|+ ++..|.+.+.+|.|.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w------~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW------FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCc------eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 34445678889999999999999999999999987533 334455555 4689999999 455788999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
-||+.+++.+. .+....+
T Consensus 94 EwDl~~lk~~~--------------------------------------------------------------~~d~~gg 111 (691)
T KOG2048|consen 94 EWDLHTLKQKY--------------------------------------------------------------NIDSNGG 111 (691)
T ss_pred EEecccCceeE--------------------------------------------------------------EecCCCc
Confidence 99998876533 3344567
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
.|++++.+|.+ .++.|+.||.+..++...++..... ...+.|.++.|+| ++..+++|+.||.|++||..+++.+.
T Consensus 112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE
Confidence 89999999988 8999999998888888877765443 2678999999999 99999999999999999999887664
Q ss_pred -----eccC----CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 466 -----YTDI----REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 466 -----~~~~----~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+... ...|.++.|-.+ ..|++|...|+|.+||...+.+++. ...|...|.+++..+ ++..+
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS--------~~~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS--------HSCHDADVLALAVAD-NEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh--------hhhhhcceeEEEEcC-CCCeE
Confidence 2222 234777877755 4789999999999999999988764 445788999999999 88999
Q ss_pred EEEECCCcEEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++++.|+.|.-|........+.. ....|...+.+++..++ .|++|+.|..+.+-....
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 99999999999887665442221 22457788999998876 899999999999877655
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=210.37 Aligned_cols=236 Identities=20% Similarity=0.420 Sum_probs=204.0
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+...+|...++++..-..++.+++|+.|..+.+|.+.+..... .|.+|+.+|.++.|+++..+|++|+.+|+|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~Llaagsasgti 94 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTI 94 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCce
Confidence 3445566677777777788899999999999999977654333 378999999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++||+++.+ .++++.||.
T Consensus 95 K~wDleeAk--------------------------------------------------------------~vrtLtgh~ 112 (825)
T KOG0267|consen 95 KVWDLEEAK--------------------------------------------------------------IVRTLTGHL 112 (825)
T ss_pred eeeehhhhh--------------------------------------------------------------hhhhhhccc
Confidence 999997654 256778999
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..+..+.|+|-+ +.++++.|+.+++||++...|...+. |...|.++.|+| +|+++++|+.|..++|||+..+++. .
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence 999999999999 88999999999999999999999995 999999999999 9999999999999999999999988 5
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
+..|...+.++.|+|..-+++.|+.|+++++||+++..++.. .+.....|.+..|+| ++..+++|....
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--------~~~~~~~v~~~~fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--------GKPETDGVRSLAFNP-DGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeec--------cCCccCCceeeeecC-CceeeecCchhh
Confidence 667999999999999999999999999999999998776542 222356899999999 888777776554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=180.39 Aligned_cols=242 Identities=21% Similarity=0.280 Sum_probs=189.0
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
-.|+.|++.|.+||+|+.||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999876531
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
-..+.+|..+|++++|+++| .|++++.|..|.+||+..+.+++.+....+|+..+|+|.+.+.++
T Consensus 58 --------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 58 --------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred --------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 23467899999999999999 999999999999999999999999999999999999997777777
Q ss_pred EEeCCCcEEEEEcCCCeE--EEecc---CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 446 SGSIDGKVRIWEVRRCQV--VDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~--~~~~~---~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
+.-.+..-.+-++..... +.... ......+..|.+.|++|++|+..|.+.+||..+.+++..+.+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 766666656666554322 21111 12223445699999999999999999999999998876554421 3
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEE---------EeeeccCCceEEEEEecCCCEEEEEeCC-CcEE
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK---------ASAFRVAGSQMFATFTSDGKHVVSPSED-SNIY 590 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~---------~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~ 590 (755)
..|..+.++. .+..+++-+.|..||.|++.+....-+ ..-.-+...=.+++|+.+|.|++.++.- ..+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 5677888888 899999999999999999875332211 0001122233578999999999888743 4599
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
||.-..|.
T Consensus 276 IWE~~~Gs 283 (405)
T KOG1273|consen 276 IWEKSIGS 283 (405)
T ss_pred EEecCCcc
Confidence 99988876
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=186.72 Aligned_cols=201 Identities=17% Similarity=0.268 Sum_probs=170.0
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---- 460 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~---- 460 (755)
-.+.|.+++-+|+| +|+.|+..+.|++|.+.+|..+.++ .|-..|+|+.|+- |+.+|++|+.||.|.+|.+.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 35779999999999 6666669999999999999999888 4999999999998 999999999999999998742
Q ss_pred ------CeEEEeccCCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 ------CQVVDYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 ------~~~~~~~~~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.....+.+|.-.|+.+...+. ..+|++++.|.+|++||+..+.++..... ...|.+++..| .
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---------p~si~av~lDp-a 228 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---------PSSIKAVALDP-A 228 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---------CCcceeEEEcc-c
Confidence 123368889999999988775 46899999999999999999998865432 46899999999 8
Q ss_pred CCEEEEEECCCcEEEEECCcce--------------eeEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVV--------------GKFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~--------------~~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
...+++|+.+|.|.+.++.... ........+|.+ .|++++++-||..|++|+.||.|.|||+.+
T Consensus 229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 8999999999999998755432 111222356766 999999999999999999999999999988
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
.+
T Consensus 309 ~Q 310 (476)
T KOG0646|consen 309 KQ 310 (476)
T ss_pred HH
Confidence 76
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=201.42 Aligned_cols=218 Identities=19% Similarity=0.367 Sum_probs=175.0
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCC---CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI---DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s---~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+.++.|+... +|++++..|.|.+||+.. .+.+..| .|...|+++.|++...++|++|+.||+|++||++...-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 4567888533 999999999999999987 5555666 499999999999999999999999999999999987655
Q ss_pred -EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 -DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 -~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.+....+.|..|.|+| .+..|+++...|.+++||++...... .+...|.+.|.++.|+| +..+||+|+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------~k~~AH~GpV~c~nwhP-nr~~lATGGRD 241 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------KKLTAHNGPVLCLNWHP-NREWLATGGRD 241 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------HHhhcccCceEEEeecC-CCceeeecCCC
Confidence 5666778899999999 67899999999999999999765432 23567899999999999 99999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEe--CCCcEEEEEcCCCCcccCCCccccceeeeecCCeE
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPS--EDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVS 619 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~ 619 (755)
++|+|||..+........ .....++..+.|-|+..+ |++++ .|-.|+|||+..+. .++..|.+|.-.
T Consensus 242 K~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---------IP~~t~~eH~~~ 311 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---------IPYATFLEHTDS 311 (839)
T ss_pred ccEEEEeccCCCccceeE-EeecceeeeeeeccCccchhhhhhccccceEEEEeecccc---------ccceeeeccCcc
Confidence 999999988654443332 445678999999998776 55554 58889999998654 344445555444
Q ss_pred E-EEcCCC
Q 004410 620 V-AIPWVG 626 (755)
Q Consensus 620 v-a~~w~g 626 (755)
+ .+.|.+
T Consensus 312 vt~i~W~~ 319 (839)
T KOG0269|consen 312 VTGIAWDS 319 (839)
T ss_pred ccceeccC
Confidence 4 566655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=188.88 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=191.0
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccc--------------eeeecccccEEEEEEecCC-CEEEEEcCCCcEEE
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTG--------------QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV 310 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~--------------~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~v 310 (755)
.|+++|.|+.+..|.|||+.-....+..+..+ ..-.+|+++|.+|.|+.+- +.||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 46799999999999999986433322222211 1134799999999998754 68999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++++. .++..|...
T Consensus 271 WD~~~g~p~--------------------------------------------------------------~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGKPK--------------------------------------------------------------SSITHHGKK 288 (463)
T ss_pred EEcCCCCcc--------------------------------------------------------------eehhhcCCc
Confidence 999988643 334568899
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-eEE-E
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC-QVV-D 465 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~-~ 465 (755)
|.++.|+|.. .|++|+.|++|.+.|.+. .+.-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +++ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 999999999999999984 3444556788999999999988899999999999999999975 444 7
Q ss_pred eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 466 YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
...|...|.+|++++.- .++++++.++.|++|++......... .....-++..|+++.|....++++|+..+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~------~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK------EHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc------cccccccceeecccCCCcceEEEecCccce
Confidence 88899999999999854 56788999999999998765432111 111223457888999978889999999999
Q ss_pred EEEEECCcce
Q 004410 545 VRVLCGENVV 554 (755)
Q Consensus 545 I~iwd~~~~~ 554 (755)
++|||..+..
T Consensus 443 ~~vwd~~~~~ 452 (463)
T KOG0270|consen 443 LRVWDIFTNS 452 (463)
T ss_pred EEEeecccCh
Confidence 9999987643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=194.88 Aligned_cols=259 Identities=19% Similarity=0.315 Sum_probs=206.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.||...|..+++.+. ..+++++.||++++|+-...+.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l------------------------------------ 48 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYL------------------------------------ 48 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccc------------------------------------
Confidence 44678999999999998754 48999999999999986444321
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE-EEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD-LSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYV 431 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V 431 (755)
..+.+.+|.+-|.. ++|-+ ++ .|++|++|.+|.+|.+.+..++.++ +|...|
T Consensus 49 ------------------------~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV 104 (745)
T KOG0301|consen 49 ------------------------ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV 104 (745)
T ss_pred ------------------------cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce
Confidence 13456677777776 77775 33 8999999999999999999999888 599999
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 432 ~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.|+.... ++. +++||.|.++++|-+..... .+.+|...|.++..-|.+ .+++|+.|.+|++|.- ++++.+
T Consensus 105 C~ls~~~-~~~-~iSgSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t---- 174 (745)
T KOG0301|consen 105 CSLSIGE-DGT-LISGSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT---- 174 (745)
T ss_pred eeeecCC-cCc-eEecccccceEEecchhhhc-ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh----
Confidence 9999876 555 99999999999998765433 388999999999999988 8899999999999986 333332
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
...|...|.++++-+ ...+++++.||.|++|+.. ....+.. .+|...|.+++...++..|+++++|++++|
T Consensus 175 ----f~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-ge~l~~~--~ghtn~vYsis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 175 ----FSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-GEVLLEM--HGHTNFVYSISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred ----hccchhheeeeEEec--CCCeEeecCCceEEEEecc-Cceeeee--eccceEEEEEEecCCCCeEEEecCCceEEE
Confidence 345788999999986 3579999999999999983 3344444 789999999998889999999999999999
Q ss_pred EEcCCCCcccC-CCccccceeeee
Q 004410 592 WNYSNQDKSSS-RSKSIWSCESFL 614 (755)
Q Consensus 592 Wd~~~~~~~~~-~~~~~~~~~~f~ 614 (755)
|+...-..... ...++|++....
T Consensus 246 W~~~e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 246 WKKDECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred eecCceEEEEecCccceEEEEEee
Confidence 99873322223 333677765443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=183.39 Aligned_cols=308 Identities=22% Similarity=0.327 Sum_probs=216.2
Q ss_pred ccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccc--cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 236 DRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSREL--SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 236 ~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
..+.++.|.++.. .||+|+.|..|+||.+......- ....-...|..|..+|+++.|+|+|.+||+|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3456688888877 99999999999999876443222 12223345778999999999999999999999999999998
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
...-.. +. ... ...... ........+.+|...|.
T Consensus 94 ~~~~~~---~~---~d~--------------e~~~~k--------------------------e~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 94 QGDVRI---FD---ADT--------------EADLNK--------------------------EKWVVKKVLRGHRDDIY 127 (434)
T ss_pred ecCcCC---cc---ccc--------------hhhhCc--------------------------cceEEEEEecccccchh
Confidence 653110 00 000 000000 00112456778999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-- 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-- 468 (755)
+++|+|++ ++++++.|..+++||+..|+.+..+. |..+|..++|.| -.+++++-+.|...+++.+...+++....
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 99999999 99999999999999999999999884 999999999999 89999999999988888776544332111
Q ss_pred ------------------C----CcceEEEEEccCCCeEEEEeC----CCc-----EEEEECCCCeEeeeeeEEeccccc
Q 004410 469 ------------------I----REIVSAVCYCPDGKGGIVGTM----TGN-----CRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 469 ------------------~----~~~V~~v~~spdg~~la~gs~----dg~-----I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
| ..-...++|+|||..+++... .+. .++|+-. .+...... ..
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~----lp 279 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK---DLKRPAAR----LP 279 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc---cccCceee----cC
Confidence 0 112456789999999988542 222 2333322 11111111 12
Q ss_pred CCCCCeEEEEEcCC----------------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 518 LPGKRITGFQFSPS----------------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 518 ~~~~~I~~v~fsp~----------------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
........+.|+|- --+++++......|.|||.++....+... .-|-..|++++|++||.+|+
T Consensus 280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~-nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD-NIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe-eeeeeeecceeecCCCcEEE
Confidence 23344555555541 11344455556789999998866655543 44778999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
..|.||...+--++..+
T Consensus 359 vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 359 VSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeccCCceEEEEEcchh
Confidence 99999999888887765
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=184.72 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=181.3
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccc---------cccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSREL---------SSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~---------~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~ 315 (755)
+..+.|+-+..|+|+||++....+.+ .......++.+|.+.=+.|+|||-. ..|+||.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 44566777889999999976433222 2233445678999999999999932 2478888888999999877
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+.... . ...|.+|+..|-+|+
T Consensus 244 g~W~v--------------------------------------------------------d---~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 244 GSWKV--------------------------------------------------------D---QRPFTGHTKSVEDLQ 264 (440)
T ss_pred Cceee--------------------------------------------------------c---Cccccccccchhhhc
Confidence 64210 0 123567999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCC---eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---EE-Ee
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DY 466 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~---~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---~~-~~ 466 (755)
|+|.. .|++|+.||+|+|||++.+ .++.+-.|...|+.|.|+. ...+|++|+.||+++|||++.-+ .+ .+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 99966 9999999999999999988 5666667999999999998 77799999999999999998643 33 78
Q ss_pred ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeE-----------eeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 467 TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQL-----------YQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 467 ~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~-----------~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..|+.+|++|.|+| +...|++++.|..|.+||+....- ++.....+.- .....+.+..+.|+++-+.
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCC
Confidence 88999999999999 456788899999999999963321 0000000000 0112456888999999999
Q ss_pred EEEEEECCCcEE
Q 004410 535 KVIVTSADSLVR 546 (755)
Q Consensus 535 ~l~s~s~Dg~I~ 546 (755)
+|++++.||.-.
T Consensus 423 ~lvsTa~dGfnV 434 (440)
T KOG0302|consen 423 LLVSTAIDGFNV 434 (440)
T ss_pred eEEEecccceeE
Confidence 999999888543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=190.71 Aligned_cols=344 Identities=15% Similarity=0.165 Sum_probs=247.8
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+.+|.|.|.++.|+|.+..|++++.|.++.||.-.+........-..-++-|..+.-+...|+|+++.+++-+.-|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 45899999999999999999999999999999876553221111111223355667899999999999999999999999
Q ss_pred EEccCCe---eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 311 WKVIEHE---RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 311 Wdv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|...+.. ....+..+...+..+.|.+.+. ..+..+.|.+..++.+-..+..--.+..-+-|
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe----------------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE----------------FLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCC----------------EEEEeccccceeeecccccccceeeecccccc
Confidence 9833321 1122333444455555554442 23344444444444333111111223344568
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----------------------------------------------
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----------------------------------------------- 419 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~----------------------------------------------- 419 (755)
...++|+++-+.. .+++|...+.+|+|+....
T Consensus 407 GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~ 486 (764)
T KOG1063|consen 407 GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAA 486 (764)
T ss_pred cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccc
Confidence 8899999999855 9999999999999976310
Q ss_pred ------------------------------eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEE
Q 004410 420 ------------------------------RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVV 464 (755)
Q Consensus 420 ------------------------------~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~ 464 (755)
+..+.++|...|++++.+| +++++++++... .|++|+..+-..+
T Consensus 487 ~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 487 VCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred eeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 0001234888999999999 999999988654 5999999887666
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|.-.|+.++|+|||++|++.+.|.++.+|......... +. ....+.|..-|.++.|+| ++.++++++.|.
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~---fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK 640 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FR---FACLKAHTRIIWDCSWSP-DEKYFATASRDK 640 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hh---hccccccceEEEEcccCc-ccceeEEecCCc
Confidence 488899999999999999999999999999999885443221 11 112456788899999999 888999999999
Q ss_pred cEEEEECCcc--eeeEEEeeeccCCceEEEEEecC-----CCEEEEEeCCCcEEEEEcCC
Q 004410 544 LVRVLCGENV--VGKFKASAFRVAGSQMFATFTSD-----GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 544 ~I~iwd~~~~--~~~~~~~~~~~~~~v~~l~fspd-----g~~L~sgs~Dg~I~iWd~~~ 596 (755)
+|+||...+. ..........+...|+.++|.|- +..++.|-+.|.|.||....
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 9999998765 22222233667889999998762 33678888999999999763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=174.16 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=175.6
Q ss_pred cccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.|.+.|+++...+ .|+|+++|+.||.|.|||++.......-.. +.+.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l---------------------------i~k~----- 88 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL---------------------------IAKH----- 88 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc---------------------------eehe-----
Confidence 4889999999988 689999999999999999976532110000 0000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp 438 (755)
.+. .....-.+|.-.|..+.|-|-. .+.+++-|.++++||..+-+....|...+.|.+-+++|
T Consensus 89 ----~c~-----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp 153 (397)
T KOG4283|consen 89 ----KCI-----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSP 153 (397)
T ss_pred ----eee-----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcCh
Confidence 000 0012235799999999999944 99999999999999999999999999999999999998
Q ss_pred CC--CCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCe-EEEEeCCCcEEEEECCCC-eEeeeeeE---
Q 004410 439 VD--DNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDN-QLYQQNQI--- 510 (755)
Q Consensus 439 ~d--~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~-~~~~~~~~--- 510 (755)
.. ..++++|..|-+|++.|+..+... .+.+|...|.++.|+|...+ |++|+.||.|++||++.. ........
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~ 233 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT 233 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence 43 356788888899999999999887 68899999999999997665 678999999999999854 11111100
Q ss_pred ---EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee
Q 004410 511 ---CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK 556 (755)
Q Consensus 511 ---~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~ 556 (755)
+.......|.+.+.+++|.. ++.++++++.|..+++|+..+....
T Consensus 234 k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCccc
Confidence 01112346788999999999 9999999999999999997765433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=195.40 Aligned_cols=250 Identities=21% Similarity=0.269 Sum_probs=201.7
Q ss_pred ccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec---CCCEEE
Q 004410 224 WLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DGQYLA 300 (755)
Q Consensus 224 w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp---dg~~La 300 (755)
..|...........+.+++++|+|++||+|..-|.++||++.... ..-.+.+|+..|.|+.||. ..++||
T Consensus 448 fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-------~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 448 FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-------YTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-------hhhheecccceeEEEeecCchhhhHhhh
Confidence 334444444445667889999999999999999999999975432 2234789999999999986 357999
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
+|+.|..|+|+|+...- .+
T Consensus 521 SasrdRlIHV~Dv~rny-------------------------------------------------------------~l 539 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNY-------------------------------------------------------------DL 539 (1080)
T ss_pred hccCCceEEEEeccccc-------------------------------------------------------------ch
Confidence 99999999999985431 23
Q ss_pred ceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
+.++.+|...|+++.|.-+| .+++++.|+.|.+=-.+....-..|. ....++.+++.| ...++++++.|.
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDR 618 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEeccc
Confidence 67788999999999998877 89999999987643322111111221 345689999999 899999999999
Q ss_pred cEEEEEcCCCeEEEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 452 KVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 452 ~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.|+|||+..++.+.. .++.+....+...|.|.||++.+.|.++.+||..+++++.. ...|...|+++.
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--------m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--------MTGHSEAVTGVK 690 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--------hcCcchheeeee
Confidence 999999999988743 34556788899999999999999999999999999988753 456888999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
|.+ |-+.|++.+.||.|.||.+.
T Consensus 691 F~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 691 FLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ecc-cchhheeecCCceEEEEECc
Confidence 999 99999999999999999855
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=184.00 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=205.0
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...|.+|+|+.+.+.||.+-.||.|-||++..+=..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------------------------------------- 60 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------------------------------------- 60 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence 357999999999999999999999999998653211
Q ss_pred ceEEEeCCcceeccCccceEecC-CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD 441 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~ 441 (755)
...+.+ ....|-.|+|++.+.|.+.+.+|.|.-||+.+.+.+..+. ..+.|.+++.+| .+
T Consensus 61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 112233 3467999999988899999999999999999999988885 678999999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
..++.|+.||.+..++...+.+.. +...++.|.+++|+|++..|+.|+.||.|++||...+.........+.+..+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 999999999988888888777663 34456889999999999999999999999999999988766333333333333
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...-|+++.|. ....|++|...|+|.+||.......... ..|.+.|.+++..+++.++++++.|+.|..|...+..
T Consensus 203 ~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 203 EPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 44567888887 3478999999999999998765443333 5588999999999999999999999999999988875
Q ss_pred c
Q 004410 599 K 599 (755)
Q Consensus 599 ~ 599 (755)
+
T Consensus 279 ~ 279 (691)
T KOG2048|consen 279 S 279 (691)
T ss_pred c
Confidence 3
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=188.88 Aligned_cols=237 Identities=17% Similarity=0.240 Sum_probs=205.4
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.++++.+.|||+.|++|+.-.++.|||+......+. .++..-.-...+++.+||.++.+++..||.|.|||+.+
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 3467788999999999999999999999875443222 22333344678899999999999999999999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
... +..|.||...+.||.
T Consensus 541 q~~--------------------------------------------------------------VrqfqGhtDGascId 558 (705)
T KOG0639|consen 541 QTL--------------------------------------------------------------VRQFQGHTDGASCID 558 (705)
T ss_pred cee--------------------------------------------------------------eecccCCCCCceeEE
Confidence 543 566789999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~ 474 (755)
.+++| .|.+|+-|.+||.||++++..+........|.++-.+| .+++++.|-.++.|.|......+..++..|...|.
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVL 637 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVL 637 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeecccccEEE
Confidence 99999 99999999999999999999888888889999999999 99999999999999999998888888889999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
++.|.+.|+++++.+.|+-+..|.+.-+..+.+. .....|.++.++- +.++|++|+.|....||.+
T Consensus 638 SlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs---------kE~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------KESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecccCceeeecCchhhhhhccCccccceeec---------cccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 9999999999999999999999999887765421 2356899999998 8899999999988888753
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-19 Score=185.83 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=107.0
Q ss_pred ceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 472 IVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 472 ~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.|+.+.|.| |...||+++.||.|++|.+..+.+.... ....+....|...|+.+.|+|--...|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 478888999 7889999999999999999876654321 22334456788999999999988889999999999999999
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+....... .+|.+.|.+++|||||+.+++.+.||+|++|+-..++
T Consensus 708 ~~~~~~~~l--~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 708 ANAKLYSRL--VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhhhee--ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 987776666 8899999999999999999999999999999988776
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=186.68 Aligned_cols=217 Identities=19% Similarity=0.293 Sum_probs=159.8
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE---EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~---~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+..+..|.+.|.++.|.|.. .|++++.|.++++||+.+..+... ++|...|.+++|.|.+...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 44567899999999999955 999999999999999999988776 47999999999999999999999999999999
Q ss_pred EcCCCeE----------------------------EEeccCCcceEE---EEEccCCCeEEEEeC-CCcEEEEECCCCeE
Q 004410 457 EVRRCQV----------------------------VDYTDIREIVSA---VCYCPDGKGGIVGTM-TGNCRFYDIKDNQL 504 (755)
Q Consensus 457 dl~~~~~----------------------------~~~~~~~~~V~~---v~~spdg~~la~gs~-dg~I~iwD~~~~~~ 504 (755)
|++-..+ ..+..+...|.+ +.+..|...||+++. |+.|+|||++.+..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9974220 012223334444 556678888998877 99999999998765
Q ss_pred eeeeeEEecccccCC---CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC--CceEEEEEecCCCE
Q 004410 505 YQQNQICLQGKKKLP---GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA--GSQMFATFTSDGKH 579 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~---~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~~v~~l~fspdg~~ 579 (755)
.....-.-......+ ...++++.... .|.++++.+.|+.|++|++........+...++. .--..-..+||+.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 432211111111112 34567777766 5677777777999999998865444333222221 11223456899999
Q ss_pred EEEEeCCCcEEEEEcCCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++|+.|...++|.+++.+
T Consensus 332 l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EeccCCCcceeeeeecCcc
Confidence 9999999999999999876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=183.97 Aligned_cols=272 Identities=15% Similarity=0.214 Sum_probs=210.5
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+..++|.|||..|+.+..+ ++.|||.+.+. ..|+++||++.|.|++|+.||+.+|+|+.|+.|.||+-.-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 45559999999988876654 79999987654 34679999999999999999999999999999999974321
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
.. --..|...|.|+.|
T Consensus 86 G~----------------------------------------------------------------LkYSH~D~IQCMsF 101 (1081)
T KOG1538|consen 86 GI----------------------------------------------------------------LKYSHNDAIQCMSF 101 (1081)
T ss_pred ce----------------------------------------------------------------eeeccCCeeeEeec
Confidence 10 01359999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---eccCCcc
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTDIREI 472 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~~ 472 (755)
+|-. .|++++-. ..-+|....... ........|.+.+|.. ||.+|+.|-.||+|.|-+-...+.+. -.+...+
T Consensus 102 NP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 102 NPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred CchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCC
Confidence 9988 78877753 355787654332 2334567789999998 99999999999999998765544443 2346778
Q ss_pred eEEEEEccCC-----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 473 VSAVCYCPDG-----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 473 V~~v~~spdg-----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|.+++|+|.. ..+++.....++.+|.+.....- +...-+-...++++.| ++.++++|+.|+.+.+
T Consensus 179 iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig---------k~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 179 IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG---------KDRALNFDPCCISYFT-NGEYILLGGSDKQLSL 248 (1081)
T ss_pred ceEEEecCCCCCCccceEEEEeccceeEEEEecceeec---------ccccCCCCchhheecc-CCcEEEEccCCCceEE
Confidence 9999999952 57888888999999988754332 1222234557889999 9999999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|.-.. ...+........|+.++..|++++++.|+.||+|..|++..
T Consensus 249 fTR~G---vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 249 FTRDG---VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EeecC---eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 96543 22333344677999999999999999999999999999754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-17 Score=173.09 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=178.8
Q ss_pred CcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-cCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-s~Dg~I~vWdv~~ 315 (755)
+..++|+|+++.+ +++..++.|++|+...... .+.+..|.. +..++|+|+++.|+++ +.|+.|++||+.+
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4569999999976 5677899999999775432 122333333 5678999999977655 5689999999976
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.+.+..+ . +...+.+++
T Consensus 105 ~~~~~~~--------------------------------------------------------------~-~~~~~~~~~ 121 (300)
T TIGR03866 105 RKVLAEI--------------------------------------------------------------P-VGVEPEGMA 121 (300)
T ss_pred CeEEeEe--------------------------------------------------------------e-CCCCcceEE
Confidence 5433211 1 112356799
Q ss_pred EcCCC-eEEEEeCCC-cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcCCCeEEEecc-C--
Q 004410 396 WSKNG-FLLSSSADK-TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRRCQVVDYTD-I-- 469 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg-~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~~~~~~~~~~-~-- 469 (755)
|+|++ .+++++.++ .+.+||..+++.+........+.+++|+| ++.+|+ ++..++.|++||+.+++.+.... +
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 200 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP 200 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence 99999 777777664 57788999888877665556678899999 888775 44569999999999987653221 1
Q ss_pred -----CcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECC
Q 004410 470 -----REIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SAD 542 (755)
Q Consensus 470 -----~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~D 542 (755)
......++|+|+++.++++ ..++.+.+||+.+++...... +...+.++.|+| ++.+|+++ ..+
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~ 270 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---------VGQRVWQLAFTP-DEKYLLTTNGVS 270 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---------eCCCcceEEECC-CCCEEEEEcCCC
Confidence 1124568899999986654 456789999999877653211 234688999999 77787776 568
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
+.|.+||..+........ .....+.++|+|
T Consensus 271 ~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~ 300 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSIK---VGRLPWGVVVRP 300 (300)
T ss_pred CeEEEEECCCCcEEEEEE---cccccceeEeCC
Confidence 999999998865544432 234457777654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=169.40 Aligned_cols=291 Identities=20% Similarity=0.294 Sum_probs=209.2
Q ss_pred eeccCcceeecC----CC-CeeEEeeCCCeEEEEECCCCcccccccccceeee--cccccEEEEEEecC----CCEEEEE
Q 004410 234 IIDRHGSATLKP----GD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLD----GQYLASG 302 (755)
Q Consensus 234 ~~~~~~~~~~sp----dg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspd----g~~LaSg 302 (755)
|...+..++|.+ +. ..+|+.+ ..++.+|....... . ...|.+. .|...-..++|+-| ..+||.|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~-i---r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG-I---RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc-e---eeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 344455567663 22 2444444 45788888764431 1 1112221 47888899999775 3489999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
|.-|.|+|.|+.+++. ..
T Consensus 112 G~~GvIrVid~~~~~~--------------------------------------------------------------~~ 129 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQC--------------------------------------------------------------SK 129 (385)
T ss_pred cceeEEEEEecchhhh--------------------------------------------------------------cc
Confidence 9999999999987754 23
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+.+|...|..|.++|+. +++++|.|..||+|++++..|+.+|+ |.+.|.++.|++ ++.+|++++.|..|++|
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLW 208 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEE
Confidence 467899999999999988 99999999999999999999999995 999999999999 99999999999999999
Q ss_pred EcCCCeEE-----------------------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeE--
Q 004410 457 EVRRCQVV-----------------------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQL-- 504 (755)
Q Consensus 457 dl~~~~~~-----------------------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~-- 504 (755)
++...+.. ....|...|.|+.| -|.++++=+-++.|..|..- -.+.
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhh
Confidence 99843211 01123444555555 35788888888999999872 1111
Q ss_pred ---eeeeeEEecccccCCCCCeEEE--EEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecCC
Q 004410 505 ---YQQNQICLQGKKKLPGKRITGF--QFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 505 ---~~~~~~~~~~~~~~~~~~I~~v--~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspdg 577 (755)
..+......+........|.-+ +|.| -.++|+.|...|.|.+||+....... ..........|...+|+.||
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 1111112233344455556554 4556 67899999999999999998755422 11112344578899999999
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 004410 578 KHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~ 595 (755)
.+|+...+|++|--||.-
T Consensus 366 s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEEeCCCcEEEEEee
Confidence 999999999999999864
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=175.83 Aligned_cols=259 Identities=17% Similarity=0.205 Sum_probs=194.7
Q ss_pred cceeeecccccEEEEEEecCC--CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
..+.+.-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------- 223 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------- 223 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------------------------------
Confidence 345567789999999999954 58899999999999999633210
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe---cC
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HN 428 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~ 428 (755)
..-+..+..|..+|.+|.|+|.+ .+++.++||+|++-|++....-..+. ..
T Consensus 224 ------------------------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 224 ------------------------KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ------------------------cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 01134567899999999999987 99999999999999998776544443 45
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..+..++|+. +...++.+..=|.+.+||+++... -.+.-|...|++|+++| ...+||+++.|++.+|||++.-...
T Consensus 280 ~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 280 IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred eeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 5678888887 666666666667999999997654 35677888999999999 4567899999999999999864433
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC---cceeeEEEeeeccC----CceEEEEEecCCC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE---NVVGKFKASAFRVA----GSQMFATFTSDGK 578 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~---~~~~~~~~~~~~~~----~~v~~l~fspdg~ 578 (755)
....+ ....|...|.+..|+|.++. |++.+.|..|+|||.. ..........+.+. -....+.|.|+..
T Consensus 359 ~sp~l----st~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 359 ASPFL----STLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred CCcce----ecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 21001 12347789999999996666 9999999999999984 11111111001111 1345678999999
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 004410 579 HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++|-.-..|-|+|-+.++
T Consensus 434 li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 434 LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EEEEeccCcceeEEcCCCCE
Confidence 99999999999999987776
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-19 Score=199.57 Aligned_cols=249 Identities=16% Similarity=0.249 Sum_probs=197.1
Q ss_pred ccCcceeecCCCCe----eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEE
Q 004410 236 DRHGSATLKPGDHE----LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRV 310 (755)
Q Consensus 236 ~~~~~~~~spdg~~----lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~v 310 (755)
.+...++|.+.|.. +|.|..||.|.+|+..+-.. -.......++..|++.|..+.|++.. ++||+|+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc-CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44556888888776 88899999999999775311 11223345677899999999999965 59999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+..-+...... -....+.
T Consensus 144 WDlnn~~tP~~~~------------------------------------------------------------~~~~~~e 163 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG------------------------------------------------------------SQAPPSE 163 (1049)
T ss_pred eccCCcCCCCCCC------------------------------------------------------------CCCCccc
Confidence 9997643211100 0124578
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCCC---cEEEEEcCCCe
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQ 462 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~Dg---~V~iwdl~~~~ 462 (755)
|.+++|+..- .|++++.+|.+.|||++..+.+..+... ..+..++|+|.+...+++++.|. .|.+||+|...
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as 243 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS 243 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence 9999999866 8889999999999999999887777522 34889999997778888888775 59999998543
Q ss_pred --EEEeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 --VVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 --~~~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+..+..|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+.++ ...+..+..+.|+|.++..+++.
T Consensus 244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec--------CCCCcceeeeeecCCCcchhhhh
Confidence 33457899999999999955 88899999999999999999887542 33567899999999888999999
Q ss_pred ECCCcEEEEECCcc
Q 004410 540 SADSLVRVLCGENV 553 (755)
Q Consensus 540 s~Dg~I~iwd~~~~ 553 (755)
+-||.|.|+.+...
T Consensus 316 sfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGT 329 (1049)
T ss_pred eeccceeeeeeecC
Confidence 99999999987653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-18 Score=172.75 Aligned_cols=246 Identities=15% Similarity=0.244 Sum_probs=196.4
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+.|++|.|+|...+|++|+.|++++||.+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------------- 247 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------------- 247 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------------------------------
Confidence 46899999999999999999999999999854321
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEe
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFN 437 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fs 437 (755)
..++.+.--..+|.+++|.|+| .+++++....++.||+.+.+..+.-. ....+....++
T Consensus 248 ---------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 248 ---------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred ---------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 1133333446789999999999 78899999999999999887765542 33467888899
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
| ++++|+..+..|.|.+....+++.+......+.|..++|+.||+.|++.+.+|.|.+||++...++..+.. .+
T Consensus 313 h-d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D--~G--- 386 (514)
T KOG2055|consen 313 H-DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD--DG--- 386 (514)
T ss_pred C-CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee--cC---
Confidence 9 99999999999999999999999998888899999999999999999999999999999999977654432 11
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCceEEEEEecCCCEEEEEe--CCCcEEE
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGSQMFATFTSDGKHVVSPS--EDSNIYI 591 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~v~~l~fspdg~~L~sgs--~Dg~I~i 591 (755)
.-.-+.++.++ ++.++++|+..|.|.|||..+.. .+...........|+++.|++|++.|+.+| .+..+++
T Consensus 387 --~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 387 --SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred --ccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 11335677778 88999999999999999966421 111111234556899999999999988776 4667888
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
-.+.+-.
T Consensus 464 VHvPS~T 470 (514)
T KOG2055|consen 464 VHVPSCT 470 (514)
T ss_pred Eecccee
Confidence 8776543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=177.57 Aligned_cols=219 Identities=16% Similarity=0.256 Sum_probs=181.2
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...|++......++++|+..+.|+|||++.. .+.+.+.+|+..|++|.++-...|||+++..|.|.|..+.++
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 3445666666689999999999999997621 234568899999999999999999999999999999999887
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
....++.. +....|.-+.|
T Consensus 154 ~~tt~f~~-------------------------------------------------------------~sgqsvRll~y 172 (673)
T KOG4378|consen 154 QKTTTFTI-------------------------------------------------------------DSGQSVRLLRY 172 (673)
T ss_pred ccccceec-------------------------------------------------------------CCCCeEEEeec
Confidence 64333221 11234567889
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 397 SKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 397 s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
++.. +|.+++.+|.|.+||+....++..+ .|..+...|+|+|.+..+|++.+.|.+|.+||++............+
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P 252 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP 252 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC
Confidence 9987 7888999999999999988887777 49999999999998899999999999999999998887776777788
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.++++|.++|.+|++|+..|.|..||++..+.... ....|...|++++|-|
T Consensus 253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred cceeeecCCceEEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 99999999999999999999999999997654322 1334667799999988
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=169.01 Aligned_cols=280 Identities=17% Similarity=0.241 Sum_probs=196.1
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
..+|++..+|.|++||..+.. ..+++.+|...+..++|.. .+..+.+|+.||+|++||+........+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--- 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--- 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe---
Confidence 568899999999999976532 3457889999999999977 4678999999999999999876543222
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC-CCEEEEEEcCCC-eEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNG-FLL 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s~~~-~L~ 403 (755)
.+.+|. .+..+++-.-.+ .++
T Consensus 111 ---------------------------------------------------------~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 111 ---------------------------------------------------------SWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred ---------------------------------------------------------eccCCCCCcceEeeccCcCCeEE
Confidence 222333 344555554334 555
Q ss_pred EEe----CCCcEEEEeCCCCeE-EEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEeccCCcc
Q 004410 404 SSS----ADKTVRLWQVGIDRC-LRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREI 472 (755)
Q Consensus 404 s~s----~Dg~V~iWdl~s~~~-~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~~~~~ 472 (755)
+|. .+-.|.+||++..+. +..+ .|.+.|+++.|+|.+.++|++|+.||.|.|+|+.... ++....+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 543 456799999998776 6666 4999999999999999999999999999999997642 3456677888
Q ss_pred eEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecc----cccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEE
Q 004410 473 VSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVR 546 (755)
Q Consensus 473 V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~ 546 (755)
|..+.|..++ +.|.+-+..++..+|++..+............ ........+.. ..+|.+....++++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999887 56888899999999999988754322211000 00000111111 234555566655554 55555
Q ss_pred EEECCc-----ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 547 VLCGEN-----VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 547 iwd~~~-----~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++-... ..........+|...|.++.|...+.++.||++||.+.+|...
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 554332 1111111113466778889999999999999999999999973
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=176.75 Aligned_cols=272 Identities=18% Similarity=0.273 Sum_probs=204.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
-.+.||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+.... .+.+++|.+.....++++.....
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~------- 465 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC------- 465 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-------
Confidence 3578999999999999999999999999999999999999998887644 67888888887776666544322
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEE----eCCCcEEEEeCCC---C--eEEEEEecC
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS----SADKTVRLWQVGI---D--RCLRVFSHN 428 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~----s~Dg~V~iWdl~s---~--~~~~~~~h~ 428 (755)
+++.++..... + +.+ ..+..|+++ ..++.+..|.-.. . ....++.|.
T Consensus 466 --------~~ivnp~~G~~----~-----e~~-------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~ 521 (733)
T KOG0650|consen 466 --------VLIVNPIFGDR----L-----EVG-------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP 521 (733)
T ss_pred --------eEEeCccccch----h-----hhc-------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecC
Confidence 12222211100 0 000 001122222 2456777886431 1 123455799
Q ss_pred CcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 429 NYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
..|..+.|+. .|+||++...+ ..|.|+++...... .+...++.|.++.|+|.-.+|++++ ...|+|||+..+.+
T Consensus 522 k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 522 KSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred Cccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH
Confidence 9999999998 99999997664 46999999877655 4567788899999999999999987 46899999988766
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+.. .......|..++++| .|..|++++.|+.+..+|+.-....++.. ..|...+++++|++.-.++++|+
T Consensus 600 vKk--------L~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 600 VKK--------LLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred HHH--------HhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeec
Confidence 543 222346789999999 88999999999999999987654444432 45888999999999999999999
Q ss_pred CCCcEEEEE
Q 004410 585 EDSNIYIWN 593 (755)
Q Consensus 585 ~Dg~I~iWd 593 (755)
.||.+.|+-
T Consensus 670 dDgtv~Vfh 678 (733)
T KOG0650|consen 670 DDGTVIVFH 678 (733)
T ss_pred CCCcEEEEe
Confidence 999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=167.42 Aligned_cols=265 Identities=23% Similarity=0.282 Sum_probs=189.5
Q ss_pred CCeeEE---eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 247 DHELTL---GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 247 g~~las---gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
.+++|. ++..|...|-.+.+..+.-... -.+.||+++|..++|+| +.+.||+|++|.+|.||++-.+.....+
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~---P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASY---PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCC---CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 345554 2334455555544433322222 23679999999999999 6678999999999999998766432221
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-- 400 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-- 400 (755)
..|+..+.||...|--++|+|..
T Consensus 121 -------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 121 -------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred -------------------------------------------------------ccceEEEeecceeEEEEeecccchh
Confidence 25678899999999999999976
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCc-ceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIRE-IVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~-~V~~v~~ 478 (755)
.|++++.|.+|.+||+.+++.+..+.|.+.|+++.|+. +|.+|++.+.|.+|||||.++++++... .|.+ .-..+.|
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 89999999999999999999999999999999999998 9999999999999999999999998543 4443 3556778
Q ss_pred ccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 479 CPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 479 spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
-.+|..+-+|.. +..+-+||..+-.....++ .+ .....|.---|.|+..-..++|-.|+.||.|...+...
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeE-Ee-----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 888885555543 5678999876543321111 01 12344555556773334455667899999999876442
Q ss_pred eEE-EeeeccCCceEEEEEecC
Q 004410 556 KFK-ASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 556 ~~~-~~~~~~~~~v~~l~fspd 576 (755)
-+. ...+....+...+.|-|.
T Consensus 299 ~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 299 FVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eeEEecccccCCcccccccccc
Confidence 221 122445566677777664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=172.34 Aligned_cols=268 Identities=14% Similarity=0.210 Sum_probs=194.1
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
...+++||+...+....+..+...+....+...+...+.......+++ +..|... ..+.+.|+...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~-------------~~~~~K~-g~~~~Vp~~~k 76 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKV-------------MRIKEKD-GKTPEVPRVRK 76 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCcee-------------EEEeccc-CCCCccceeec
Confidence 347999999887776666655555544444444444443333333322 2222211 11222233222
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.+-. .-.|++..... ++++|+..+.|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|..+.+++
T Consensus 77 ~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 77 LTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred cccc-hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCc
Confidence 2211 33455554445 99999999999999999777777764 999999999998 88999999999999999999987
Q ss_pred EEEeccC--CcceEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDI--REIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~--~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......+ ...|.-+.|+|..+. |.+++.+|.|.+||+.....+.. ....|..+..+++|+|.+..++++.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEe
Confidence 7643333 345668999997654 56689999999999998765432 2445778899999999999999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..|.+||.......-. .....+...++|+++|.+|+.|...|.|+.||+...+
T Consensus 228 G~Dkki~~yD~~s~~s~~~---l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDR---LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cccceEEEeecccccccce---eeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999999999875333222 3355688999999999999999999999999998765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=196.59 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=216.0
Q ss_pred cceeecCCCC-eeEEee----------CCCeEEEEECCCCccc--ccccccceeeecccccEEEEEEecCCCE----EEE
Q 004410 239 GSATLKPGDH-ELTLGQ----------RMRRVRVHPVKKQSRE--LSSLYTGQEFLAHEGSILTMKFSLDGQY----LAS 301 (755)
Q Consensus 239 ~~~~~spdg~-~lasgs----------~dg~V~Vw~~~~~~~~--~~~~~~~~~l~~H~~~V~~l~fspdg~~----LaS 301 (755)
...+|+|.+. ++|+|. .+.++-||.+...... +..... + .-...-+.++|.+.|.. ||.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s---~-~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS---L-QSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccc---c-cccccceeeeecccCCCccceeec
Confidence 3478999987 566553 3455666655432221 121111 1 12345778999987765 899
Q ss_pred EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 302 GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
|.+||.|.+||...-..- .....+
T Consensus 86 G~edG~I~ly~p~~~~~~--------------------------------------------------------~~~~~l 109 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIAN--------------------------------------------------------ASEEVL 109 (1049)
T ss_pred cccCCceEEecchhhccC--------------------------------------------------------cchHHH
Confidence 999999999997542000 001235
Q ss_pred eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+...|.+.|..|.|++.. .|++|+.||.|.|||+..-+.-..+ ...+.|.+++|+......|++++.+|++.||
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW 189 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence 5677899999999999976 8999999999999999875443333 2567899999998778899999999999999
Q ss_pred EcCCCeEE-EeccCC--cceEEEEEccCC-CeEEEEeCCCc---EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 457 EVRRCQVV-DYTDIR--EIVSAVCYCPDG-KGGIVGTMTGN---CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 457 dl~~~~~~-~~~~~~--~~V~~v~~spdg-~~la~gs~dg~---I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
|++..+.+ .+..+. ..+..+.|+|+. ..|++++.|.. |.+||++...... .....|...|.++.|+
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWC 262 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccC
Confidence 99987655 444443 357899999975 56777776654 9999998654321 1134578899999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++++++.|+.|.+|+.++....... ......+..+.|.|... .+++++-||.|-||.+.+..
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~--p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGEL--PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeec--CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999999999885554444 44667899999999776 78889999999999998765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=181.68 Aligned_cols=261 Identities=18% Similarity=0.251 Sum_probs=192.7
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
-++..|.+.|..++|.|-...|++|+.||+|++|+++.....
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------- 329 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------- 329 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc--------------------------------------
Confidence 367889999999999999999999999999999998431100
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----------eEEEE-E
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----------RCLRV-F 425 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~----------~~~~~-~ 425 (755)
....-+|+.+|++|.++|.|+++.+++ ++++|+.||+|+.|++... ..... .
T Consensus 330 ----------------~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 330 ----------------AEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred ----------------cccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 001135788999999999999999999 9999999999999965421 11122 2
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
+|.+.|..+++++ ....|++++.||+||+|+........+.... +..+.+.+-. ..++....+.....+++.+..
T Consensus 394 Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 394 GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTS--SRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred ccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeecc--chhHhhhhhcccccccchhhh
Confidence 5999999999999 7888999999999999999877664333322 2334444433 232333334455555555444
Q ss_pred EeeeeeEEecccc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 504 LYQQNQICLQGKK--KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 504 ~~~~~~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
..+...+.-.... ......+..+.++| ...+.+++..|..|+++|..+....+.. ..|...++++++.|+|-+|+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchhe--eeccceecceeecCCCceEE
Confidence 4433332111111 11234678889999 7799999999999999998776555544 67889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+++.|+.|++|++....
T Consensus 548 s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eecCCceeehhhccchh
Confidence 99999999999986543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=164.29 Aligned_cols=301 Identities=13% Similarity=0.109 Sum_probs=218.4
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
.+.+|..-++++.|+.++++||+|+.|..++||++...-.. ....+++.. ..|...|.|++|....++|.+|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-cCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 35567778888999999999999999999999997632111 111122222 3466899999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+.|+++.+.+..+. -....
T Consensus 130 I~HDiEt~qsi~V~~------------------------------------------------------------~~~~~ 149 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN------------------------------------------------------------ENNNR 149 (609)
T ss_pred Eeeecccceeeeeec------------------------------------------------------------ccCcc
Confidence 999998876442221 11234
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-E---EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-C---LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~---~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+.|+.+..+|.. .|++.+.++.|.+||.+..+ . +..-........+.|+|....+|++.+..+-+-+||++..+.
T Consensus 150 ~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 150 GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence 588999999976 99999999999999997654 2 222235667889999999999999999999999999987543
Q ss_pred E--E---eccCC---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 464 V--D---YTDIR---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 464 ~--~---~~~~~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
. + ..... ..-..+.|+|+|+.|++--....-.+||+....+... +......-......|.+++|.- ...
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~-k~D~N~~GY~N~~T~KS~~F~~--D~~ 306 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL-KSDHNPNGYCNIKTIKSMTFID--DYT 306 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE-eccCCCCcceeeeeeeeeeeec--cee
Confidence 2 1 11222 2236789999999998866666667888887554321 1110000112345677888874 456
Q ss_pred EEEEECCCcEEEEECCcc---------------------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 536 VIVTSADSLVRVLCGENV---------------------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~---------------------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+++|+.+=.|++|.+... .......+.+|...+..+.|+|...+|++.+-...++||.-
T Consensus 307 v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 307 VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 999999999999985421 11112234678888999999999999999999999999964
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=166.49 Aligned_cols=227 Identities=18% Similarity=0.283 Sum_probs=175.3
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-ecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-SHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~h~~~V~ 432 (755)
.+...+.+.....-..+....+.||.++|++++|+|-+ .|++||.|.+|.||++..+.. +..+ +|...|-
T Consensus 56 Ggaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg 135 (472)
T KOG0303|consen 56 GGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG 135 (472)
T ss_pred CcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE
Confidence 34444444433332334455678999999999999965 999999999999999875533 2333 5999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
-++|+|.-.+.|++++.|.+|.||++.+++.+-...|...|.+++|+.||.+|++.+.|..|+|||.++++++.+..
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~--- 212 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV--- 212 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---
Confidence 99999988999999999999999999999877556699999999999999999999999999999999999876531
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEE----CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE-EEeCCC
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTS----ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV-SPSEDS 587 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~-sgs~Dg 587 (755)
...+.+-..+.|.. ++. +++++ .+.++-+||..+...............|.---|.+|...|. +|-.|+
T Consensus 213 ----~heG~k~~Raifl~-~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~ 286 (472)
T KOG0303|consen 213 ----AHEGAKPARAIFLA-SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS 286 (472)
T ss_pred ----cccCCCcceeEEec-cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence 11223444556665 566 55443 46789999988766555444455666777777888888775 455799
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|+.|.+.+..
T Consensus 287 ~IRYyEit~d~ 297 (472)
T KOG0303|consen 287 SIRYFEITNEP 297 (472)
T ss_pred ceEEEEecCCC
Confidence 99999998765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=156.86 Aligned_cols=281 Identities=12% Similarity=0.151 Sum_probs=201.1
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccc-----cccccceeee-cccccEEEEEEe-------cCCCEEEEEcCCC
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSREL-----SSLYTGQEFL-AHEGSILTMKFS-------LDGQYLASGGEDG 306 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~-----~~~~~~~~l~-~H~~~V~~l~fs-------pdg~~LaSgs~Dg 306 (755)
...|+|||.-+++-+.|..+.+|++......- .......+++ .....|...+|- |+..++|+.+.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 37899999999999999999999875321100 0111111111 123567777774 5778999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
-|++||.-+|+....+.. ..
T Consensus 134 PIh~wdaftG~lraSy~~------------------------------------------------------------yd 153 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA------------------------------------------------------------YD 153 (406)
T ss_pred ceeeeeccccccccchhh------------------------------------------------------------hh
Confidence 999999998875433321 11
Q ss_pred CCC---CEEEEEEcCCCeEEEEeCCCcEEEEeC-CCCeEEEE---E-----ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 387 HSS---EVLDLSWSKNGFLLSSSADKTVRLWQV-GIDRCLRV---F-----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 387 h~~---~V~~l~~s~~~~L~s~s~Dg~V~iWdl-~s~~~~~~---~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
|.. ...+|+|+|||.-+.++..+.|+++|+ +.|.-... + ...+-|.|++|+|.+...++.|+....+-
T Consensus 154 h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 154 HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceee
Confidence 222 245799999994455667799999998 44433222 2 24778999999998888999999999999
Q ss_pred EEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 455 IWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
||.-..+..+ .+.+|.+.|+.++|.++|+.|.+|.. +..|..||++.-.... ..+..+.... ..-.-+...| .
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~T-NQRI~FDld~-~ 308 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV---YALERHVGDT-NQRILFDLDP-K 308 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh---hhhhhhccCc-cceEEEecCC-C
Confidence 9988877766 56789999999999999999999886 6689999998644321 1122222111 2223355667 8
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+.+|++|+.||.|++||..+....... ...+...++.++++|--.++++++..
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999999999999885442221 14577889999999998888877643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=178.38 Aligned_cols=302 Identities=18% Similarity=0.317 Sum_probs=211.3
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...+.|+|-...++++....+|+|||..++.. +..+... ..-...|+.|.+-. |..+|++|+.||.||||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 34488999999999999888999999887653 3322211 12345788998855 557899999999999997422
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
... ..+ .++.. |.. + . ..+.+..+.-.-+.
T Consensus 1143 ~~~--------~~~-----------eLVTa-----------------------w~~----L-s---~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1143 DKW--------KKP-----------ELVTA-----------------------WSS----L-S---DQLPGARGTGLVVD 1172 (1387)
T ss_pred ccc--------CCc-----------eeEEe-----------------------ecc----c-c---ccCccCCCCCeeee
Confidence 110 000 00000 000 0 0 00011111114467
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEecc
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTD 468 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~ 468 (755)
|.... +|++++.-+.|+|||+...++...+. ...-|+++.-+-..++.+++|..||.|++||.+... +..+..
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 87755 88888888999999999998888774 566788887766578999999999999999998643 235667
Q ss_pred CCcc--eEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 469 IREI--VSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 469 ~~~~--V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
|... |..+.+.+.|-. |++|+.+|.|++||++.........+... ..-+..++++..++ ....+++|+. +.|
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~-hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHE-HAPIIASGSA-QLI 1327 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeecc-CCCeeeecCc-ceE
Confidence 7776 999999997765 99999999999999998633322222110 01134699999999 8899999998 999
Q ss_pred EEEECCcceee-E---EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGK-F---KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~-~---~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+||+....... + ........+.+.+++|+|.--+||+|+.|..|.||...+++
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99997642211 1 11112345678999999999999999999999999987654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-18 Score=177.06 Aligned_cols=279 Identities=20% Similarity=0.244 Sum_probs=203.4
Q ss_pred hhhhhcccccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc-cccccccceeeecccccEEEEEEec
Q 004410 216 AKRKVKRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR-ELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 216 ~~k~~~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~-~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
.++...+.|...+ ++..|.+.+..++|+|-...|++++.||++++|.+.+... ....+.+.-+|.+|.++|.|++..+
T Consensus 276 ~k~a~~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 276 LKKAFTKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred hhhhhheecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC
Confidence 4455567788888 8888899999999999999999999999999999843211 1123344567999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.++.+|+.||+|+.|++....- .+... +
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds~--------------------------------------------d---- 384 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQD--PDDSY--------------------------------------------D---- 384 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCC--ccccc--------------------------------------------C----
Confidence 999999999999999998752210 00000 0
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.......+.||.+.|+.+++|... .|++++.||+|++|+...... .+|. ..+.-+.+.+-.......++...-
T Consensus 385 --p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 385 --PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred --cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccc
Confidence 011245678999999999999988 999999999999999877666 4443 445566677654121222322222
Q ss_pred CcEEEEEcCCCeEEEecc--------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 451 GKVRIWEVRRCQVVDYTD--------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~--------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+.--++++...+.+.+.. ....+.-+.++|.+...+++..|+.|+++|..++.++.. ...|...
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~s 533 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDS 533 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccce
Confidence 222333333332222111 124477889999999999999999999999999988754 3346678
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
++++++.| ++.+|++++.|+.+++|.........
T Consensus 534 vtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 534 VTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecceeecC-CCceEEeecCCceeehhhccchheee
Confidence 99999999 99999999999999999876544433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-17 Score=171.03 Aligned_cols=203 Identities=18% Similarity=0.321 Sum_probs=151.3
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCe-------EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-------CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.|+++.|.|-. .|+.++.||.|+||.+..+. ....+ .|...|+.+.|+|.-.+.|+++++|-+|++||++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 47899999955 99999999999999987543 23333 3999999999999888999999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+.... .+.+|.+.|..++|+|||+.+|+.+.||+|++|..+.+.... .......+.+--.+.|.- +++++++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv------~Eg~gpvgtRgARi~wac-dgr~viv 781 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV------YEGKGPVGTRGARILWAC-DGRIVIV 781 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc------ccCCCCccCcceeEEEEe-cCcEEEE
Confidence 88766 789999999999999999999999999999999998765431 111112223444566766 8888888
Q ss_pred EECC----CcEEEEECCcceee-EEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCCc
Q 004410 539 TSAD----SLVRVLCGENVVGK-FKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 539 ~s~D----g~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+.| ..|.+||....... +........-.+.--.+.+|.. ++++|-.|..|++|.+-...+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 7766 46888987764421 1111122222223334555654 567888999999999876653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-15 Score=160.99 Aligned_cols=290 Identities=25% Similarity=0.436 Sum_probs=221.3
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEE-ecCCC-EEEEEcC-C
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKF-SLDGQ-YLASGGE-D 305 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~f-spdg~-~LaSgs~-D 305 (755)
....+...+.++.+.+.+..++.++.++.+.+|+.......+ ..+.++. ..+..+.+ ++++. +++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI------KSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE------EEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 344556677779999999999999999999999987654112 2344433 36777777 88887 5555455 9
Q ss_pred CcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 306 GTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 306 g~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+.+.+|++.. .. ....+
T Consensus 134 ~~~~~~~~~~~~~--------------------------------------------------------------~~~~~ 151 (466)
T COG2319 134 GTVKLWDLSTPGK--------------------------------------------------------------LIRTL 151 (466)
T ss_pred ccEEEEEecCCCe--------------------------------------------------------------EEEEE
Confidence 9999999865 21 13456
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~ 460 (755)
..|...|..++|++++ .+++++. |+.+++|++..+..+..+. |...|.+++|+| ++. ++++++.|+.|++||...
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC
Confidence 7799999999999999 7787775 9999999999888877775 899999999998 776 555569999999999987
Q ss_pred CeEEE--eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 461 CQVVD--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 461 ~~~~~--~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+.... +..|.... ...|+|++..+++++.++.+++|++..... ... + ..|...+.++.|.| ++..++
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~----~~~~~~v~~~~~~~-~~~~~~ 300 (466)
T COG2319 231 GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT----L----SGHSSSVLSVAFSP-DGKLLA 300 (466)
T ss_pred CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE----E----ecCCccEEEEEECC-CCCEEE
Confidence 77665 55666654 338999998999999999999999987665 211 1 33478899999999 777777
Q ss_pred EEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 538 VTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
+++.|+.+.+|+..............|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 301 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 7999999999987765444333223566678899994333566665 688999999998765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=154.03 Aligned_cols=249 Identities=20% Similarity=0.322 Sum_probs=176.9
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
...+.|+|||..|++-++|..+++|++-..--.... ..+ ..+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----~~~--~~~-------------------------------- 93 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----DGP--LNF-------------------------------- 93 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCC----CCc--ccc--------------------------------
Confidence 345799999999999999999999998432100000 000 000
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEc-------CCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCC---cEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS-------KNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNN---YVT 432 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s-------~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~---~V~ 432 (755)
...+... ......|.+.+|- |+. ++++.+.+.-|++||.-+|+....+. |.+ ...
T Consensus 94 ----------~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh 162 (406)
T KOG2919|consen 94 ----------SKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH 162 (406)
T ss_pred ----------ccceeEE-eccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe
Confidence 0000000 1123456666664 344 88899999999999999999887774 443 346
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEc-CCCe---EEE-----eccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCC
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ---VVD-----YTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~---~~~-----~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~ 502 (755)
+++|+| |+.+|++|. ...|+++|+ +.+. +.. ..+..+.|.+++|+| +.+.+++|+...++-||.-...
T Consensus 163 sL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 163 SLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 899999 999998774 688999999 4432 221 233467799999999 5669999999999999988887
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEEeeeccCC---ceEEEEEecCCC
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKASAFRVAG---SQMFATFTSDGK 578 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~---~v~~l~fspdg~ 578 (755)
.++.. ...|.+.|+.++|++ +++.+++|.. |..|..||++......... .+|.+ .-.-....|+|+
T Consensus 241 ~pl~l--------lggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 241 RPLQL--------LGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred Cceee--------ecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhh-hhhccCccceEEEecCCCCc
Confidence 76642 225788999999999 7788888765 7899999998754433221 23332 222345578999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 004410 579 HVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~ 596 (755)
+|++|+.||.|++||+++
T Consensus 311 ~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeeccCCCccEEEEecCC
Confidence 999999999999999988
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-15 Score=158.95 Aligned_cols=278 Identities=13% Similarity=0.154 Sum_probs=176.8
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
++...++.|.+|++.... .+ ...+.+. +.+....|+++|++++|++++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g-~l---~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHEG-AL---TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCCC-ce---eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-------
Confidence 344668999999985321 11 1223332 345677899999999987664 5788999998622111000
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-C
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-A 407 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~ 407 (755)
... ...+....++++|++ .|++++ .
T Consensus 74 ----------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 74 ----------------------------------------------------AES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred ----------------------------------------------------eee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 000 011235679999999 566555 5
Q ss_pred CCcEEEEeCCCC----eEEEEEecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCCCeEEE-------eccCCcceEE
Q 004410 408 DKTVRLWQVGID----RCLRVFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRCQVVD-------YTDIREIVSA 475 (755)
Q Consensus 408 Dg~V~iWdl~s~----~~~~~~~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~~~~~~-------~~~~~~~V~~ 475 (755)
++.|.+|++.+. +.+..+.+.....+++++| +++++++ ...++.|.+||+.+...+. ..........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 899999999743 2333333445578889999 8877755 5566999999997632221 1122345678
Q ss_pred EEEccCCCeEEEEeC-CCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECC
Q 004410 476 VCYCPDGKGGIVGTM-TGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGE 551 (755)
Q Consensus 476 v~~spdg~~la~gs~-dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~ 551 (755)
+.|+|+|++++++.. ++.|.+||+.. +.+.....+...............+.++| ++++++++. .++.|.+|+..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEe
Confidence 999999999988876 89999999973 33321111111101111122334688999 888888875 47899999975
Q ss_pred ccee--eEEEeeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 004410 552 NVVG--KFKASAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSN 596 (755)
Q Consensus 552 ~~~~--~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~ 596 (755)
.... .+...... ......+.|+|||++|+++.. +++|.+|+++.
T Consensus 259 ~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 259 EDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 4322 22221111 124457899999999998875 89999999864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-16 Score=172.24 Aligned_cols=270 Identities=19% Similarity=0.184 Sum_probs=197.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEe
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 335 (755)
+.+.||+++...... ....-...|.|++|+| +..+||.|..+|.|.+||+..+.... ...
T Consensus 222 ~~~~vW~~~~p~~Pe-------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s~---- 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE-------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PSG---- 282 (555)
T ss_pred ceEEEEecCCCCCce-------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Ccc----
Confidence 479999987542211 1223457899999999 67889999999999999997765310 000
Q ss_pred eCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEE
Q 004410 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVR 412 (755)
Q Consensus 336 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~ 412 (755)
.-.....|..+++.+.|..+. .+++++.||.|.
T Consensus 283 --------------------------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 283 --------------------------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred --------------------------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 011224689999999998765 599999999999
Q ss_pred EEeCCCCeE------EEE-------EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CCCe------EEEeccCC
Q 004410 413 LWQVGIDRC------LRV-------FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RRCQ------VVDYTDIR 470 (755)
Q Consensus 413 iWdl~s~~~------~~~-------~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~~~------~~~~~~~~ 470 (755)
.|+++.-.. ... ......++++.|.+.+.+.|+.|+.+|.|.--+. +... ......|.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 998763322 111 1134568999999999999999999999887333 2222 22456788
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+.|+++.++|=+..++..+.|.+++||... ....+.. ...+...+++++|+|..+..++++..||.|.|||
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 899999999977666655559999999887 4333321 2234456999999999899999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+..................+.+.|+++|+.|++|...|.|++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 875433333222333556677888999999999999999999999654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=182.57 Aligned_cols=285 Identities=18% Similarity=0.286 Sum_probs=219.8
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+.++.+.+|.+.|.|++|...|.++++|+.|..|+||...+.. +...+.||.+.|+.++.+.+..++|+++.|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------CLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------hhccCCCCccccchhccchhhhhhhhcccC
Confidence 3455677889999999999999999999999999999965433 334578999999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
..|+||.+.++. |+..+.
T Consensus 254 ~vIrvWrl~~~~--------------------------------------------------------------pvsvLr 271 (1113)
T KOG0644|consen 254 KVIRVWRLPDGA--------------------------------------------------------------PVSVLR 271 (1113)
T ss_pred ceEEEEecCCCc--------------------------------------------------------------hHHHHh
Confidence 999999987764 355678
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
||++.|++++|+|-. +.+.||++++||.+-.-.+.. +.....+.++.|.. .+.-+++|+.|+.-+.|.+..
T Consensus 272 ghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~ 347 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQ 347 (1113)
T ss_pred ccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhH
Confidence 999999999999853 788999999999872111111 12456678888887 889999999999999988764
Q ss_pred CeEEEeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.... ...+.-+.++.+- .+.+++-.+-.+.+|++.++.+... ...|...+..+.++|-+....+.+
T Consensus 348 l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~--------l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 348 LAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN--------LMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred hhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhh--------hcccccceeeeeecCCCcHhhhhc
Confidence 3211 0111111111121 3455566677789999999876542 334667899999999999999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.||.+.|||+-......... .+ .+.+....||+||..++....-|.++|.....++
T Consensus 415 g~dgst~iwdi~eg~pik~y~-~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYF-IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cCCCceEeeecccCCcceeee-cc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999987765544442 33 4567778999999999999888999999876665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=162.16 Aligned_cols=230 Identities=23% Similarity=0.392 Sum_probs=177.1
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
..+||+|+.-|.|+|.|+.+.. ....+.+|.++|..|+|.|+. ++|++|+.|..||+|++++..++..+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~-------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-- 175 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ-------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-- 175 (385)
T ss_pred CeeEEeecceeEEEEEecchhh-------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--
Confidence 4589999999999999976543 335688999999999999964 799999999999999999887654332
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s 404 (755)
-+.||.+.|+++.|+.++ +|++
T Consensus 176 ---------------------------------------------------------G~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 176 ---------------------------------------------------------GVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred ---------------------------------------------------------ccccccCcEEEEEEcCCCCeeec
Confidence 246899999999999999 9999
Q ss_pred EeCCCcEEEEeCCCCeE-------------------------EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 405 SSADKTVRLWQVGIDRC-------------------------LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~-------------------------~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
+++|.+|++|++...+. ...| .|..+|-|+.|- ++++++-+-++.|..
T Consensus 199 cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~ 275 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVC 275 (385)
T ss_pred cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEE
Confidence 99999999999873211 1111 178888888884 589999999999999
Q ss_pred EEcCC-CeE-------------E-EeccCCcceE--EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 456 WEVRR-CQV-------------V-DYTDIREIVS--AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 456 wdl~~-~~~-------------~-~~~~~~~~V~--~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
|.... .+. . .+......|. ..+|.|-++.||.|...|.|.+||++.........+ ....
T Consensus 276 w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~ 351 (385)
T KOG1034|consen 276 WKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THSK 351 (385)
T ss_pred EecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eecc
Confidence 98721 111 1 1222222333 446677789999999999999999998776422211 1223
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
....|...+|+. ++..|+....|++|.-||.
T Consensus 352 ~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 352 SGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 457899999999 9999999999999999984
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=159.84 Aligned_cols=260 Identities=22% Similarity=0.240 Sum_probs=191.7
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+.+.+|.+.|.+|.|+.++++||+|+.|..++||.+...-..+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------- 92 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------- 92 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence 345678999999999999999999999999999999985431100
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCC---c
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN---Y 430 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~---~ 430 (755)
..+|+.... .|.+.|.+|+|...+ .|.+|..+++|.+-|+++.+.+.++.|.. .
T Consensus 93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 013333322 356899999999888 99999999999999999999999998766 9
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEe
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
|+.+..+| .++.|++.+.++.|.+||++..+ ++...........+-|+|- ..+|++.+..+-+-+||.+.....
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 99999999 68999999999999999998765 3445556677889999994 567788899999999999865432
Q ss_pred eeeeEEecccccC--CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEe----eeccCCceEEEEEecCCC
Q 004410 506 QQNQICLQGKKKL--PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKAS----AFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 506 ~~~~~~~~~~~~~--~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~----~~~~~~~v~~l~fspdg~ 578 (755)
..- ..+.+.. ....-.++.|+| ++..+++--....-.+||.....+ .++.. ..-+...+.+++|.-|.
T Consensus 231 ~~~---~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~- 305 (609)
T KOG4227|consen 231 VYQ---RSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY- 305 (609)
T ss_pred HHh---hhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-
Confidence 100 0111111 122346788999 777777665555566677665322 22210 01123457788887654
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 004410 579 HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 579 ~L~sgs~Dg~I~iWd~~~~ 597 (755)
.+++|+.+=.|++|.+...
T Consensus 306 ~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eeeccCcccceEEEecCCC
Confidence 4999999999999999653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=152.89 Aligned_cols=261 Identities=18% Similarity=0.219 Sum_probs=186.9
Q ss_pred eeeccCcceeecCCCC-eeEEeeCC-------CeEEEEECCCCccc--ccccccceeee-cccccEEEEEEecCCCEEEE
Q 004410 233 RIIDRHGSATLKPGDH-ELTLGQRM-------RRVRVHPVKKQSRE--LSSLYTGQEFL-AHEGSILTMKFSLDGQYLAS 301 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~-~lasgs~d-------g~V~Vw~~~~~~~~--~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaS 301 (755)
.+.+.|..++-+|..+ +|++...+ ..+.||.+...... ..++.+...+. .|-+.|.|+.|.|++..||+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 3456677777888766 44544321 35789987654322 22233333343 56679999999999999998
Q ss_pred EcCCCcEEEEEccCCeee-eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 302 GGEDGTVRVWKVIEHERL-DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 302 gs~Dg~I~vWdv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
-. |..|.+|++.++..+ ..+..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~s-------------------------------------------------------- 163 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLS-------------------------------------------------------- 163 (370)
T ss_pred ec-cCceEEEEcccCcchheeecc--------------------------------------------------------
Confidence 76 789999999877541 11110
Q ss_pred ceEecCCCCCEEEEEEcC--CCeEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 381 LHEFQGHSSEVLDLSWSK--NGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~--~~~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..-.+|....++-+|+| ++..+....|+++..||+++.++...+. |...|..+.|+|....+|++|+.||.|+||
T Consensus 164 -s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 164 -SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred -cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 00112455667788998 4455666778999999999998887774 999999999999777789999999999999
Q ss_pred EcCCCe--EEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeee-----------------EEec---
Q 004410 457 EVRRCQ--VVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ-----------------ICLQ--- 513 (755)
Q Consensus 457 dl~~~~--~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~-----------------~~~~--- 513 (755)
|.+..+ +..+.+|...|.++.|+| ..++|++|+.|..|.+|....-...+... ..++
T Consensus 243 D~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~ 322 (370)
T KOG1007|consen 243 DTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQ 322 (370)
T ss_pred eccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccc
Confidence 998654 336888999999999999 45788899999999999764321100000 0111
Q ss_pred -ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 514 -GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 514 -~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.....|...|++++|+..++-.+++-+.||.+.|=...
T Consensus 323 l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345778899999999888899999999999876543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=150.48 Aligned_cols=292 Identities=15% Similarity=0.151 Sum_probs=195.8
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cccccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
-.+..|...++++.|..+++ |.+|..-|.|++|.+.+.... -.+. .|...|+.+.--|+ ..|.+-+.|+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-------~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-------PLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccc-------hhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 34556778888888988887 788999999999998764432 1244 57789999999987 56889999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCC--CceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHL--SQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.+|++..+..+..-....+......|..... ..........................+.+.+. .-.
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-----------~~~ 147 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-----------SER 147 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-----------hhc
Confidence 99999987654433222222221111111111 10000001111100000000000011111111 112
Q ss_pred CCCCCEEEEEEcCC-C---eEEEEeCCCcEEEEeCCCCeEEEEE-----------ecCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 386 GHSSEVLDLSWSKN-G---FLLSSSADKTVRLWQVGIDRCLRVF-----------SHNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 386 gh~~~V~~l~~s~~-~---~L~s~s~Dg~V~iWdl~s~~~~~~~-----------~h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
+..+.+++..|-.. + .|++|..+|.|.+||+.++..+..+ .|..+|.++.|.+ ..+.=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence 34566777775443 2 6778889999999999997444333 2899999999998 66667788889
Q ss_pred CcEEEEEcCCC--eEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 451 GKVRIWEVRRC--QVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 451 g~V~iwdl~~~--~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
.++..|++... .+. .....+-.|..+.+.||++.+|+++.|+.|+||..++...+.. .+.|...|++
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--------LkyHsagvn~ 298 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--------LKYHSAGVNA 298 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh--------hhhhhcceeE
Confidence 99999998743 221 2233345688899999999999999999999999999887643 3457789999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
++|+| +...++.++.|++|.+|++
T Consensus 299 vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCC-CCchhhhccCCceEEeeec
Confidence 99999 8899999999999999985
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-14 Score=152.56 Aligned_cols=318 Identities=28% Similarity=0.416 Sum_probs=232.8
Q ss_pred cceee-cCCCC-eeEEeeC-CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEcc
Q 004410 239 GSATL-KPGDH-ELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI 314 (755)
Q Consensus 239 ~~~~~-spdg~-~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~ 314 (755)
..+.+ ++++. .++..+. ++.+.+|+... .......+..|...|.+++|+|++.++++++. |+.+++|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 113 SKLALSSPDGNSILLASSSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred eeEEEECCCcceEEeccCCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 33444 77887 4454444 99999999765 12233457889999999999999999999986 9999999999
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce-EecCCCCCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-EFQGHSSEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gh~~~V~~ 393 (755)
.+..+..+..+...+.++.+.+... ........++.+.+|+.. ....+. .+.+|...+ .
T Consensus 187 ~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~ 246 (466)
T COG2319 187 TGKPLSTLAGHTDPVSSLAFSPDGG---------------LLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-V 246 (466)
T ss_pred CCceEEeeccCCCceEEEEEcCCcc---------------eEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-e
Confidence 8777777766666666666653322 111113445555555322 223334 578888876 4
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--- 467 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--- 467 (755)
..|++++ .+++++.|+.+++|++..... +..+ .|...|.++.|+| ++..+++++.|+.+.+||+.........
T Consensus 247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 325 (466)
T COG2319 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325 (466)
T ss_pred EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeec
Confidence 4899998 888999999999999986664 4444 6889999999999 8888888999999999999887766432
Q ss_pred cCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcE
Q 004410 468 DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLV 545 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I 545 (755)
.+...+..+.|.+++..++.+ ..|+.+.+|++........ .. ....+..+.+.+ + ..++. +..++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 394 (466)
T COG2319 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT----LE-----GHSNVLSVSFSP-D-GRVVSSGSTDGTV 394 (466)
T ss_pred ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEE----ec-----CCceEEEEEECC-C-CCEEEEecCCCce
Confidence 566679999994343566666 6788999999988762111 00 111288999999 7 65555 8899999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+|+.......... ..+...+....+++++.++++++.++.+++|+..+
T Consensus 395 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 395 RLWDLSTGSLLRNL--DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecccCeeeeec--cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99998876555443 22217889999999999999999999999999987
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-15 Score=140.25 Aligned_cols=286 Identities=18% Similarity=0.236 Sum_probs=193.2
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+..-+++|.+++|++|..+|.|.|..++.... +-......-..++|+++|..|+|. ..+|++|+ ||.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 345578999999999999999999998763211 111111223458999999999998 45777776 599999988
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+.......+ ..|.. ..|.+.-...--.|++
T Consensus 89 ~E~~es~~~K------------------------------------------------~lwe~-~~P~~~~~~evPeINa 119 (325)
T KOG0649|consen 89 NEEEESLATK------------------------------------------------RLWEV-KIPMQVDAVEVPEINA 119 (325)
T ss_pred hhhhhhccch------------------------------------------------hhhhh-cCccccCcccCCccce
Confidence 6654210000 00000 0111111112346888
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC--
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI-- 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~-- 469 (755)
|-..|.. -+++++.|+.++-||+++|+..+++. |+++|.++.--. ....+++|+.||++||||.++++.+.....
T Consensus 120 m~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 120 MWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred eEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEecccc
Confidence 8888766 67777799999999999999999995 999999999854 567899999999999999999987753321
Q ss_pred ---------CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 470 ---------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 470 ---------~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
...|.+++. +...+++|+ ...+.+|.++.......+.+ ..++..+.|- ...+++++
T Consensus 199 ~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi---------pa~v~~v~F~---~d~vl~~G 263 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI---------PARVHLVDFV---DDCVLIGG 263 (325)
T ss_pred ChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEec---------ccceeEeeee---cceEEEec
Confidence 223556655 445777765 45799999998887766554 2456667774 47888888
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEE
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd 593 (755)
..+.|.-|.+........ .......++..|+.. -++|-.++..+.+.|+.
T Consensus 264 ~g~~v~~~~l~Gvl~a~i---p~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 264 EGNHVQSYTLNGVLQANI---PVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeeeeeccEEEEec---cCCccceeeecccCCceEEEEecccceeeeeee
Confidence 888999887664333222 222334455555433 24555566666666653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-15 Score=164.35 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=207.8
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+.++||+++++|+|..||+|.||.--.... .-...+.+.-|...|.+++|++||.+|.|||..|.+.+|.+.
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~---~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD---DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEecccccc---ccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 33467799999999999999999999997544211 113446788999999999999999999999999999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+++. ++ +..-.++|..+
T Consensus 282 T~~k--qf-------------------------------------------------------------LPRLgs~I~~i 298 (792)
T KOG1963|consen 282 TGKK--QF-------------------------------------------------------------LPRLGSPILHI 298 (792)
T ss_pred CCCc--cc-------------------------------------------------------------ccccCCeeEEE
Confidence 8762 11 11234678999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe------------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~------------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.++||+ ..+....|..|.+-...+.....++. ..+-.+.+.++| ..+.++-.+..|.|.+||+-+.
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence 999999 77777889999999876554444432 245568889999 7788888889999999999875
Q ss_pred eEEE------ec------cCCcceEEEEEccCCCeEEEEeC--------CC--cEEEEECCCCeEeeeeeEEecccccCC
Q 004410 462 QVVD------YT------DIREIVSAVCYCPDGKGGIVGTM--------TG--NCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 462 ~~~~------~~------~~~~~V~~v~~spdg~~la~gs~--------dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
..+. .. .+.-.+++++.+..|.+++++-. || .+++|-......-..+... ....|
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~---I~~PH 454 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK---INNPH 454 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE---EecCC
Confidence 4331 11 12335788888888999888642 33 3778866544332211111 12345
Q ss_pred CCCeEEEEEcCCCCC-EEEEEECCCcEEEEECCc----------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 520 GKRITGFQFSPSDPS-KVIVTSADSLVRVLCGEN----------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~----------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+..+...++.+.... ..++++.||.++||-..+ ..+.... .-|..++++++|+.||. +++.+.|+.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~--sy~k~~i~a~~fs~dGs-lla~s~~~~ 531 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG--SYHKTPITALCFSQDGS-LLAVSFDDT 531 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee--ccccCcccchhhcCCCc-EEEEecCCE
Confidence 555555555443444 899999999999998732 2233333 23778999999999995 555667789
Q ss_pred EEEEEcCC
Q 004410 589 IYIWNYSN 596 (755)
Q Consensus 589 I~iWd~~~ 596 (755)
|.|||..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99999988
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=153.61 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=123.7
Q ss_pred cCCcEEEEEEeeCCCC--EEEEEeCCCcEEEEEcCCCeEE-----------EeccCCcceEEEEEccCCCeEEEEeCCCc
Q 004410 427 HNNYVTSVAFNPVDDN--YFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~--~l~sgs~Dg~V~iwdl~~~~~~-----------~~~~~~~~V~~v~~spdg~~la~gs~dg~ 493 (755)
..+.++|..+...++. ++++|..+|.|.+||+.++..+ ....|..+|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3455666665433333 4677889999999999986222 34567889999999987777788888889
Q ss_pred EEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 494 CRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 494 I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
+..|.+.. +.+.... ........|..+.+-| |++.+++++.|+.||||..++....... .-|.+.|+++
T Consensus 229 l~~~Sl~~s~gslq~~~------e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVL--kyHsagvn~v 299 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRK------EITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVL--KYHSAGVNAV 299 (323)
T ss_pred ceeeeeccccCcccccc------eEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhh--hhhhcceeEE
Confidence 99998864 3333222 2223345788889999 9999999999999999998887665554 5688999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEc
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|+...+|+++.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=160.45 Aligned_cols=334 Identities=15% Similarity=0.170 Sum_probs=225.5
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC---CEEEEEcCCCcEEEEEccCC
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG---QYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg---~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...|++|+++++.... ..|+||...++. +.+.+.+|..++..+.+.|.. .++++++.||.|++||...+
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 3789999998776544 579999976544 334688999999999998854 57889999999999999999
Q ss_pred eeeeeeecCCCCCceeEEeeCCCC--ceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLS--QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
..++.+....... .+.+.+.... ..+.+....... .............-+.... ....+...+..|.. -..+
T Consensus 93 ~Llkt~~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~--~~~~s~~~~~q~~~~~~~t--~~~~~~d~~~~~~~-~~~I 166 (792)
T KOG1963|consen 93 ELLKTFDNNLPVH-ALVYKPAQADISANVYVSVEDYSI--LTTFSKKLSKQSSRFVLAT--FDSAKGDFLKEHQE-PKSI 166 (792)
T ss_pred EEEEEEecCCcee-EEEechhHhCccceeEeeccccee--eeecccccccceeeeEeee--ccccchhhhhhhcC-CccE
Confidence 9888876544322 2222111111 111111111111 1000000000000000000 00111112223322 3567
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-----CeEE
Q 004410 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVV 464 (755)
Q Consensus 395 ~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-----~~~~ 464 (755)
.+++.+.+...-.+..+.+|+..++..... ..|...++|.+++| +++++++|..||+|.+|.--. ..+.
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccce
Confidence 888888666666778899999887651111 12777799999999 999999999999999996432 2333
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+.-|...|++++|+++|.+|++|+..|.+.+|.+.+++... .+.-+..|..+.++| |+.+.++...|+.
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------LPRLgs~I~~i~vS~-ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---------LPRLGSPILHIVVSP-DSDLYSLVLEDNQ 315 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc---------ccccCCeeEEEEEcC-CCCeEEEEecCce
Confidence 456688999999999999999999999999999999988432 122467899999999 8999999999999
Q ss_pred EEEEECCcceeeEEEe---------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKAS---------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~---------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|.+....+...+.... ..+..+-.+.++++|--+.++-.+..|.|.+||+-+..
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 9999876543322211 01123456778999977788888899999999998766
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=151.07 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=153.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEE---EeccCC-cceE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVV---DYTDIR-EIVS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~-~~V~ 474 (755)
.++++-..|.|++||..+++.+..|. +...+..+.|... ....+++|+.||+|++||++....+ .+..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 67888889999999999999999995 7888888888763 4678999999999999999976543 444444 4677
Q ss_pred EEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 475 AVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 475 ~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
+++....++.+++|+. +-.|.+||++..+.. +......|...||+++|+|.++++|++|+.||.|.|+|+
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 7777778888888865 556999999987652 222345688999999999999999999999999999997
Q ss_pred Cccee-eEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 004410 551 ENVVG-KFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 551 ~~~~~-~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..... ........+...|..+.|..++ +.|.+-+..+..++|+++.+...
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 75311 1111124566779999998876 56999999999999999988743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=147.33 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=179.5
Q ss_pred eccCcceeecCCCC-----eeEEeeCCCeEEEEECCCC--cccccccccceeeecccccEEEEEEec-CCCEEEEEcCCC
Q 004410 235 IDRHGSATLKPGDH-----ELTLGQRMRRVRVHPVKKQ--SRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (755)
Q Consensus 235 ~~~~~~~~~spdg~-----~lasgs~dg~V~Vw~~~~~--~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg 306 (755)
...++.+.|.|+.. +||+.+ ..+|+|.+... ...+...-....-..|..++++..|+. |.++|.+.+-|-
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 44556677877763 455543 36999998742 222222111122334678999999987 778999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+..|||++++.. .....++..
T Consensus 174 TCTiWdie~~~~-----------------------------------------------------------~~vkTQLIA 194 (364)
T KOG0290|consen 174 TCTIWDIETGVS-----------------------------------------------------------GTVKTQLIA 194 (364)
T ss_pred eEEEEEEeeccc-----------------------------------------------------------cceeeEEEe
Confidence 999999987621 001234668
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCC-CcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF-S---HNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~D-g~V~iwdl~ 459 (755)
|..+|.+++|...+ .+++.+.||.||++|++.-+.-..+ . ...+...++|++.+.+++++-..| ..|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999999976 9999999999999999876654444 2 357789999999999999986655 569999998
Q ss_pred CC--eEEEeccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 460 RC--QVVDYTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 460 ~~--~~~~~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.. .+..+..|...|.+|+|.|. ...|++++.|..+.+||+..-.. ..... +. ....++.|+.++|++..+.+
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP--il--ay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP--IL--AYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc--hh--hhhccceeeeeeecccCCCE
Confidence 64 34478999999999999994 67899999999999999975432 10000 00 11256789999999988999
Q ss_pred EEEEECC
Q 004410 536 VIVTSAD 542 (755)
Q Consensus 536 l~s~s~D 542 (755)
++++...
T Consensus 351 iai~~~k 357 (364)
T KOG0290|consen 351 IAICFGK 357 (364)
T ss_pred EEEEecC
Confidence 9988754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-17 Score=176.61 Aligned_cols=272 Identities=20% Similarity=0.279 Sum_probs=203.1
Q ss_pred cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 270 ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 270 ~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
.+..+...+.+.+|..+|.|+.|...|.+++||+.|..|+||..+++.+
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~------------------------------- 224 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC------------------------------- 224 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-------------------------------
Confidence 3445556677899999999999999999999999999999999776654
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ec
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SH 427 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h 427 (755)
+....||.+.|++++.+.++ ++++++.|..|++|-+..+.++.++ +|
T Consensus 225 -------------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 225 -------------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred -------------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 34567999999999999988 9999999999999999999999887 59
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-----eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-----~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
++.|++|+|+| - .+.+.||++++||.+-...+. .......+.++.|..++..+++|+.|+.-..|.+...
T Consensus 274 tgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 274 TGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred ccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence 99999999999 2 378899999999998222211 1233456788888889999999999999888876532
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVV 581 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~ 581 (755)
... ...+.-+.++.+-..+.+++-.+-.+.+|++.+....... .+|...+..+.++|-.. ...
T Consensus 349 ~~~--------------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l--~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 349 AWR--------------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL--MGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred hhh--------------ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh--cccccceeeeeecCCCcHhhh
Confidence 211 1111222222222356667777888889998775444333 66888999999999654 556
Q ss_pred EEeCCCcEEEEEcCCCCcccCCCcc-cc-ceeeeecCCeEEEEcC
Q 004410 582 SPSEDSNIYIWNYSNQDKSSSRSKS-IW-SCESFLSHNVSVAIPW 624 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~~~~~~~~~-~~-~~~~f~~~~~~va~~w 624 (755)
+++.||.+.|||+-.+-++....+. .. .--+|...+.+++++-
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd 457 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD 457 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCC
Confidence 8999999999999988755433322 11 1223555555666554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=163.68 Aligned_cols=241 Identities=22% Similarity=0.401 Sum_probs=167.0
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+...++|.||+|.|.|+.|+.||.+|++|+.|-.+.|||.-..+.++.+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------------------- 88 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------------------- 88 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------
Confidence 4455789999999999999999999999999999999998655433222
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC----------e
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID----------R 420 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~----------~ 420 (755)
-.||...|.++.|-|.. .+++|..|+.|+++|+... .
T Consensus 89 ------------------------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 89 ------------------------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred ------------------------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 25899999999999843 8999999999999999742 2
Q ss_pred EEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----------EeccCCcceEEEEEcc-CCCeEEE
Q 004410 421 CLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----------DYTDIREIVSAVCYCP-DGKGGIV 487 (755)
Q Consensus 421 ~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----------~~~~~~~~V~~v~~sp-dg~~la~ 487 (755)
.+..+. |...|..|+..|...+.|.+++.||+|+-+|++....- .+....-...++.++| +..+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 223333 89999999999955599999999999999999863211 1222224567899999 5678999
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEeccc-ccCCCCCeEEEE-EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGFQ-FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~-~~~~~~~I~~v~-fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
|+.+--.++||.+........ .+. .........++. |+| +. + ...+|.+ ....
T Consensus 219 GgsdpfarLYD~Rr~lks~~s----~~~~~~~pp~~~~cv~yf~p-~h--l--kn~~gn~----------------~~~~ 273 (758)
T KOG1310|consen 219 GGSDPFARLYDRRRVLKSFRS----DGTMNTCPPKDCRCVRYFSP-GH--L--KNSQGNL----------------DRYI 273 (758)
T ss_pred cCCCchhhhhhhhhhccCCCC----CccccCCCCcccchhheecC-cc--c--cCccccc----------------ccce
Confidence 999999999996532211100 000 001111122222 333 11 0 1111111 1112
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 566 GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 566 ~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..++.+.|+|+|.-|+..-..-.||++|+..++..
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 24677899999987776666669999999988743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=142.08 Aligned_cols=272 Identities=15% Similarity=0.223 Sum_probs=190.3
Q ss_pred CeeEEeeC----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-----CEEEEEcCCCcEEEEEccCCee
Q 004410 248 HELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-----QYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 248 ~~lasgs~----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-----~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
.+||.|+- .++|.|-.+.....++.... -..|.-+++.+.|.|+. .+|||++ ..+|+|.+...+.
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a----~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA----NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEES 133 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceeccC----CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCC
Confidence 36777764 46677777664443332211 13588899999999976 4677765 3799999864321
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
..... ++ .. ...-..+..++++..|+.
T Consensus 134 ~~~~~-------~~--L~--------------------------------------------~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 134 RVELQ-------SV--LN--------------------------------------------NNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred ceehh-------hh--hc--------------------------------------------cCcccccCCccccccccc
Confidence 10000 00 00 001123567899999998
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCeE----EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE---EeccC
Q 004410 399 NG--FLLSSSADKTVRLWQVGIDRC----LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDI 469 (755)
Q Consensus 399 ~~--~L~s~s~Dg~V~iWdl~s~~~----~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~ 469 (755)
-. ++.+++-|-+..|||++++.. .+.+.|...|..|+|.....+.|++.+.||.||++|++..+-. .-...
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 66 889999999999999998733 3445799999999999866789999999999999999976433 22222
Q ss_pred -CcceEEEEEcc-CCCeEEEEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 470 -REIVSAVCYCP-DGKGGIVGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 470 -~~~V~~v~~sp-dg~~la~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
..+...++|++ |-+++|+-..| ..|.|.|++...... .....|...|++++|.|.....|++++.|..+.
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv-------a~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV-------ARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-------ehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 56788899998 55677775444 569999998654321 124457899999999999999999999999999
Q ss_pred EEECCcceeeE-E--EeeeccCCceEEEEEec-CCCEEEEEeC
Q 004410 547 VLCGENVVGKF-K--ASAFRVAGSQMFATFTS-DGKHVVSPSE 585 (755)
Q Consensus 547 iwd~~~~~~~~-~--~~~~~~~~~v~~l~fsp-dg~~L~sgs~ 585 (755)
|||+......- . .......+.|..+.|++ .+..|+.+..
T Consensus 314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 99988754411 0 11123567899999985 4667776654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=162.25 Aligned_cols=259 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
..+..|...|..++.++. +.+++||+.||+|+||+...-..-. . .
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~-s--------------------------- 1087 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G-S--------------------------- 1087 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c-e---------------------------
Confidence 346678999999998775 4999999999999999986432100 0 0
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-------EEEEe--
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------LRVFS-- 426 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-------~~~~~-- 426 (755)
.+...++.-....+.++...+.+ .+|.++.||.|++.+++.... .+...
T Consensus 1088 ---------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1088 ---------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ---------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 00112223345778889999888 999999999999999876211 11111
Q ss_pred cC-CcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 427 HN-NYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 427 h~-~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.. ..|..-+|...... .++.+..-+.|..||+++.... +.....+.|++++.+|.+.++++|+..|.+.+||++-
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 22 33444455543455 7888888899999999986544 3445668899999999999999999999999999998
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCC--CEEEEEE--CCCcEEEEECCcceeeEEEeee---------------
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDP--SKVIVTS--ADSLVRVLCGENVVGKFKASAF--------------- 562 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~--~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~--------------- 562 (755)
+.++.... ..+..+|+.+..+|..+ ...++++ ..+.|.+|++.+..+.......
T Consensus 1227 ~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~ 1299 (1431)
T KOG1240|consen 1227 RVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDA 1299 (1431)
T ss_pred Cceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccC
Confidence 87765433 22346778877777544 4555444 5788999998887655544222
Q ss_pred --ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 --RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 --~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+.-.....++..-+.++++|+.|..|+.||....+
T Consensus 1300 ~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1300 RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 111122334454556789999999999999998877
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=158.16 Aligned_cols=234 Identities=18% Similarity=0.276 Sum_probs=175.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.|..++|-|||..|+.+.. ..+.|||..+|..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l----------------------------------------------- 45 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL----------------------------------------------- 45 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccc-----------------------------------------------
Confidence 7999999999998877764 4799999987753
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
+.++.+|...|.+++|+.+| .+++|+.|+.|.+|.-. -+-+..+.|++.|.|+.|+| -...|
T Consensus 46 ---------------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 46 ---------------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred ---------------ccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHh
Confidence 45678999999999999999 99999999999999854 33344567999999999999 77888
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.. ..-+|......+.. ......+.+.+|..||++++.|-.+|+|.+-+-....... +. .......+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~---I~---Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK---IE---RPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE---Ee---CCCCCCCCce
Confidence 888753 46788877655442 2344678899999999999999999999988654433221 11 1234678999
Q ss_pred EEEEcCCCC----CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 525 GFQFSPSDP----SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~----~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+++|+|..+ ..+++.....++.++.+.. ++.+......-...++.+-++|.|++.|+.|+.+.+|--+
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSG---KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecc---eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence 999999543 3566666666666665442 2222111222344678888999999999999999999644
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=157.79 Aligned_cols=302 Identities=16% Similarity=0.148 Sum_probs=224.9
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~D 305 (755)
...+..|..-+..+.|...|..|++|+.|..|.+||+......+. -..+|...|...+|-| +.+.|++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCceecccc
Confidence 345667788888899999999999999999999999876654433 2357999999999988 45789999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++=.+...... .....+.
T Consensus 209 gqvr~s~i~~t~~~-----------------------------------------------------------e~t~rl~ 229 (559)
T KOG1334|consen 209 GQVRVSEILETGYV-----------------------------------------------------------ENTKRLA 229 (559)
T ss_pred Cceeeeeeccccce-----------------------------------------------------------ecceecc
Confidence 99998765332211 0023345
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCC---cEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNN---YVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~---~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.|.+.|..++.-|+. .|++++.|+.+.-.|++++.....+. +.. ....|+.+|.+.++|++|+.|..+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 699999999999988 89999999999999998876655442 333 678999999777899999999999999
Q ss_pred EcCCCeEE-------E------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE--e-------eeeeEEecc
Q 004410 457 EVRRCQVV-------D------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL--Y-------QQNQICLQG 514 (755)
Q Consensus 457 dl~~~~~~-------~------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~--~-------~~~~~~~~~ 514 (755)
|.+.-..- + .......|++++|+.++.-|++...|-.|++|.-..+.- . ...+..+.+
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG 389 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG 389 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc
Confidence 98753211 1 113345699999999988888889999999995432221 0 000111223
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.. ...|.++.|--....++++|+.-|.|.||+-.+....... .+-...|+|+.=+|--..||+.+-|.-|+||--
T Consensus 390 HrN--~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M--egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 390 HRN--SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM--EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccc--ccccceeeeccCccceEEecCccceEEEEecchhHHHHHh--hcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 222 2347788775337889999999999999997764333222 223338899999999999999999999999987
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+.+
T Consensus 466 ~~~e 469 (559)
T KOG1334|consen 466 LTAE 469 (559)
T ss_pred Cccc
Confidence 5554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-13 Score=135.05 Aligned_cols=281 Identities=16% Similarity=0.262 Sum_probs=183.9
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|..+.|+.|...|..|+.|| .++++.......... ......+.-..-....++.+.....+. .+.+.....
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~---~~~~~~IvEmLFSSSLvaiV~~~qpr~--Lkv~~~Kk~- 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK---DTEGVSIVEMLFSSSLVAIVSIKQPRK--LKVVHFKKK- 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc---cCCCeEEEEeecccceeEEEecCCCce--EEEEEcccC-
Confidence 4577778999999999999987 678877654431111 111111111112223333333322211 111111111
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVD 440 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d 440 (755)
..++.+. -...|.++.++.+. |+.+=.+ .|+|||+++.+.+.++. +...+.++.+++ .
T Consensus 79 --------------~~ICe~~-fpt~IL~VrmNr~R-LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~ 140 (391)
T KOG2110|consen 79 --------------TTICEIF-FPTSILAVRMNRKR-LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-A 140 (391)
T ss_pred --------------ceEEEEe-cCCceEEEEEccce-EEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-C
Confidence 1122221 34578888888765 4444333 39999999999999884 445566777666 5
Q ss_pred CCEEEEE--eCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccc
Q 004410 441 DNYFISG--SIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 441 ~~~l~sg--s~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
+.+++.- ...|.|.|||+.+-+.+ .+..|++.+-+++|+++|.+||+++..|+ ||||.+.+++.+.++.-
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------ 214 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------ 214 (391)
T ss_pred CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------
Confidence 6677652 24589999999998777 67789999999999999999999999998 79999999998876532
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee------------------------------------eEEEe
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG------------------------------------KFKAS 560 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~------------------------------------~~~~~ 560 (755)
......|.+++|+| +..+|++.+..++|+|+.+.+... .+...
T Consensus 215 G~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~ 293 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATA 293 (391)
T ss_pred CceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEE
Confidence 12245799999999 899999999999999998553210 00000
Q ss_pred eeccCCceEEEEEe--cCCCEEEEEeCCCcEEEEEcCCC
Q 004410 561 AFRVAGSQMFATFT--SDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 561 ~~~~~~~v~~l~fs--pdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.....+.-..+.+. +...++..++.||.++.|.++-.
T Consensus 294 ~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 294 KLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred EccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00111111223343 47789999999999999999754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-15 Score=152.61 Aligned_cols=269 Identities=13% Similarity=0.220 Sum_probs=181.7
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+......+..++.......+ +..... ........++..+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h-------~~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-------LGGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCcccc-------cccccc-CCCCCcceEEEEc
Confidence 3666778999998777666655 555555544343333333322222111111 000001 1111122233344
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeC
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~ 439 (755)
.|+.+.+.+.. ++.-..+..|.+.|.+-.|+|+| -|++++.||.|++|.- +|-...++ +....|.|++|.|.
T Consensus 83 ~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 83 NDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred CCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence 45555444332 23344567899999999999999 9999999999999984 34333333 47788999999995
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~-~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
..+.+++.+ +.+.|=.+.. .++++|..|.+.|.++.|++....+++|+.|-..++||-....+.. ...
T Consensus 157 S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~ 225 (737)
T KOG1524|consen 157 SNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAA 225 (737)
T ss_pred CCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CCh
Confidence 555555543 5666666654 4677999999999999999999999999999999999988765542 345
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
|..+|++++|+| + ..+++++. +++| . .....+.|..++||+||..+++|...|.+.+=
T Consensus 226 ~ey~ITSva~np-d-~~~~v~S~-nt~R------------~-~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNP-E-KDYLLWSY-NTAR------------F-SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeecc-c-cceeeeee-eeee------------e-cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 788999999999 5 55555553 2222 1 14567899999999999999999999987653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-14 Score=136.66 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=193.6
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCC-------CcEEEEEccCCeeeeeeecCCC
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGED-------GTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~D-------g~I~vWdv~~~~~~~~~~~~~~ 327 (755)
++.|.+-++......+ +.+.|..|.+.|+.|+-+| |.+.|+|+-.+ ..+.||.+.........
T Consensus 39 dNqVhll~~d~e~s~l----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~----- 109 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSEL----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS----- 109 (370)
T ss_pred cceeEEEEecCccchh----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----
Confidence 5667777665443322 2345778999999999999 55677776442 23567776543211000
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC-eEEEE
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG-FLLSS 405 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~-~L~s~ 405 (755)
..-..+..+. .+-+.|.|+.|.|++ .+++.
T Consensus 110 ------------------------------------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 110 ------------------------------------------------STLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred ------------------------------------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 0001122222 355689999999998 66655
Q ss_pred eCCCcEEEEeCCCCeE-EEEE------ecCCcEEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEE
Q 004410 406 SADKTVRLWQVGIDRC-LRVF------SHNNYVTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSA 475 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~-~~~~------~h~~~V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~ 475 (755)
. |..|.+|++..+.. ...+ .+....++-+|+| .+++.+++. .|++++.||+++..... -..|...|..
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeee
Confidence 5 88999999987765 3333 2567788999999 566666665 58999999999866552 3456778999
Q ss_pred EEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce
Q 004410 476 VCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 476 v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
+.|+|+-+ +|++|+.||.|+|||++..+.... ....|...+.++.|+|....+|++++.|..|.+|......
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~-------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ-------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCCcccc-------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 99999765 567789999999999997654321 2445788999999999989999999999999999643211
Q ss_pred --------------------ee---E----EEeeeccCCceEEEEEecCCCE-EEEEeCCCcEEEEEcCCC
Q 004410 555 --------------------GK---F----KASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 555 --------------------~~---~----~~~~~~~~~~v~~l~fspdg~~-L~sgs~Dg~I~iWd~~~~ 597 (755)
.+ + ......|...|.+++||.-..+ +|+-+.||.+.|=++...
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 00 0 1123458889999999876554 678899999999877543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=150.64 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=152.8
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
..++..+.||++.|-+-..+ ..+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.- +|-.-..+.....
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCc
Confidence 45677888998888763321 22346789999999999999999999999999999983 5544444555566
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.+.|+.|.++....+++.. ..+.+-+... ...+...+.|.+-|.++.|++.. .+++|+
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-----------------~h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-----------------GHISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC-----------------CeEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecC
Confidence 7788888887765544321 1111111110 12245678999999999999988 999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|-..+|||.........-.|..+|++++|+| + ..++.++. +++|+ .....+.|..++|++||..++
T Consensus 206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred CceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee-eeeee----------cCCCccceEEEEEcCCCceee
Confidence 99999999976555555556999999999999 6 66666664 33441 123456789999999999999
Q ss_pred EEeCCCcEEEEE
Q 004410 487 VGTMTGNCRFYD 498 (755)
Q Consensus 487 ~gs~dg~I~iwD 498 (755)
+|+..|.+.+-.
T Consensus 273 ~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 273 CGTSTGQLIVAY 284 (737)
T ss_pred ccccCceEEEee
Confidence 999999876543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-14 Score=139.71 Aligned_cols=248 Identities=17% Similarity=0.264 Sum_probs=186.7
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
..+|+|.+|++|+..+|.+.....|.||.....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------- 44 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence 46899999999999999999999999998654431
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCeEE---EEEecCCcEEEEEEee
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV-GIDRCL---RVFSHNNYVTSVAFNP 438 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl-~s~~~~---~~~~h~~~V~~i~fsp 438 (755)
-++.+++..|...|+.+.|+|.. .|++++.|+.-++|.. ..++-. ..+.++..++++.|+|
T Consensus 45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence 23467889999999999999988 9999999999999998 444333 3346999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee------
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ------ 507 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~------ 507 (755)
.++.|++|+.-..|.||-++...-- ....++..|+++.|+|++-+|++|+.|+.+++|..--..+-..
T Consensus 111 -~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pW 189 (361)
T KOG1523|consen 111 -KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPW 189 (361)
T ss_pred -cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCC
Confidence 9999999999999999988765432 2345667899999999999999999999999996531111000
Q ss_pred -eeE---EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 508 -NQI---CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 508 -~~~---~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.++ .+........+.+..+.|+| .+..|+-.+.|+.+.+-|.....+........+ -+..++.|-.+ ..++.+
T Consensus 190 gsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~a 266 (361)
T KOG1523|consen 190 GSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAA 266 (361)
T ss_pred ccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeecC-Cceeec
Confidence 000 01111224678899999999 899999999999999999776543332221223 56677777654 456667
Q ss_pred eCCCcEEEEEc
Q 004410 584 SEDSNIYIWNY 594 (755)
Q Consensus 584 s~Dg~I~iWd~ 594 (755)
+.|..-.++..
T Consensus 267 g~~c~P~lf~~ 277 (361)
T KOG1523|consen 267 GYDCGPVLFVT 277 (361)
T ss_pred CCCCCceEEEe
Confidence 77755444444
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-14 Score=160.57 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=199.7
Q ss_pred eeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 232 ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 232 ~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
..|...+..++.++ .+.++++|+.||+||||+..+............++.--...+.++...+.++.+|.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 33444455555555 45999999999999999988766554555555566656778999999999999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
.++......+.. +... .+.........
T Consensus 1125 ~~id~~~~~~~~--------~~~~---------------------------------------------ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRV--------ATQV---------------------------------------------RIPNLKKDGVV 1151 (1431)
T ss_pred EEccccccccce--------eeee---------------------------------------------ecccccCCCce
Confidence 998653110000 0000 00000111111
Q ss_pred EEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 391 VLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 391 V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
|...+|... . .|+.+..-+.|..||++....+..++ ..+.|++++.+| .++++++|+..|.+.+||++=+..+
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCcee
Confidence 222223221 2 67778888999999998877666554 458899999999 8999999999999999999988777
Q ss_pred E--eccCCcceEEEEEccCC---CeEEEEe--CCCcEEEEECCCCeEeeeeeEE-----ecccccC------CCCCeEEE
Q 004410 465 D--YTDIREIVSAVCYCPDG---KGGIVGT--MTGNCRFYDIKDNQLYQQNQIC-----LQGKKKL------PGKRITGF 526 (755)
Q Consensus 465 ~--~~~~~~~V~~v~~spdg---~~la~gs--~dg~I~iwD~~~~~~~~~~~~~-----~~~~~~~------~~~~I~~v 526 (755)
. ...+...|+.++.+|-. ...++++ ..+.|.+|++.++.....+-.. +...... +.-.....
T Consensus 1231 ~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~ 1310 (1431)
T KOG1240|consen 1231 LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC 1310 (1431)
T ss_pred ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee
Confidence 3 33455778888888733 3444444 4677999999998665543322 0000000 11111122
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceee----------E------------------------------E--------
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGK----------F------------------------------K-------- 558 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~----------~------------------------------~-------- 558 (755)
.+.- .+..+++|+.|..|+.||....... + .
T Consensus 1311 ~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~ 1389 (1431)
T KOG1240|consen 1311 GVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQK 1389 (1431)
T ss_pred eccc-CCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccc
Confidence 2222 5678999999999999994432111 0 0
Q ss_pred ------EeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEE
Q 004410 559 ------ASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 559 ------~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd 593 (755)
.....|..+|+++++-.. ..+|++++.||.|+||.
T Consensus 1390 ~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1390 LRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001225566777776433 46899999999999994
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-14 Score=157.25 Aligned_cols=234 Identities=18% Similarity=0.146 Sum_probs=160.0
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCcee
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCL 332 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~ 332 (755)
+..|.|||..... .+.+..|...|...+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------ 242 (429)
T PRK01742 183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------ 242 (429)
T ss_pred eEEEEEECCCCCC--------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------------
Confidence 4789999976432 13456788899999999999999988654 369999987664210
Q ss_pred EEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eCCCc
Q 004410 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKT 410 (755)
Q Consensus 333 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg~ 410 (755)
+..+.+|. ..++|+||| .|+.+ +.+|.
T Consensus 243 ------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 243 ------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ------------------------------------------------EecCCCcc---CceeECCCCCEEEEEEecCCc
Confidence 11122332 357999999 66665 46776
Q ss_pred EEEE--eCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCC--CeEEEeccCCcceEEEEEccCCCeE
Q 004410 411 VRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 411 V~iW--dl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~--~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+.|| |+.+++......+...+....|+| +++.|+..+ .+|...||++.. +..... .+.. ..+.|+|||+.|
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 5555 777777665556777788999999 888766554 578888887643 333222 3332 457899999999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
+..+.++ +.+||+.++..... ... .....+.|+| ++.+|+.++.++.+.+|.+.............|.
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~l-----t~~-----~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVL-----SST-----FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEe-----cCC-----CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 8887754 56699988765421 110 1224578999 8999999999999988876443333333234566
Q ss_pred CceEEEEEecC
Q 004410 566 GSQMFATFTSD 576 (755)
Q Consensus 566 ~~v~~l~fspd 576 (755)
+.+..++|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77888899874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=148.86 Aligned_cols=192 Identities=31% Similarity=0.413 Sum_probs=150.1
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEE
Q 004410 288 LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV 367 (755)
Q Consensus 288 ~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (755)
.+++|+.+|..|++++.||++|||++.+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------------------------------------------------- 178 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------------------------------------------------- 178 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------------------------------------------------
Confidence 7899999999999999999999999755432
Q ss_pred EeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCC--
Q 004410 368 VLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDD-- 441 (755)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~-- 441 (755)
+.....|...|.+|.|+||+ .|++.+.| ..+||++.++.++.... .+.....+.|.. ++
T Consensus 179 -------------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 179 -------------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred -------------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 23345688999999999999 99999999 99999999997776654 344566677776 55
Q ss_pred -CE--EEEEeCCCcEEEEEcCCCe------EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 442 -NY--FISGSIDGKVRIWEVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 442 -~~--l~sgs~Dg~V~iwdl~~~~------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.+ ++....-+.|+.||+.... ..+.......|++++.++||+++++|+.+|.|.||+..+.+..+.
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~----- 318 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY----- 318 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----
Confidence 33 3333445667777764321 123334456899999999999999999999999999988776542
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..|..-||.+.|+| +.+.++..+.+..+.|..+.
T Consensus 319 --vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 319 --VKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred --ehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 3567888999999999 88999999998888887643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=130.69 Aligned_cols=247 Identities=14% Similarity=0.184 Sum_probs=177.3
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..|..-+|+|.+++|+.|..+|.|.+..+.+-..-...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~------------------------------------------ 48 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE------------------------------------------ 48 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC------------------------------------------
Confidence 35777789999999999999999999988643210000
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe----EEEEE-----e-----cCCc
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR----CLRVF-----S-----HNNY 430 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~----~~~~~-----~-----h~~~ 430 (755)
.....++..+++|.++|+.++|+ +.+|++++. |.|+-|.-+... +...+ . .-..
T Consensus 49 ----------~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe 116 (325)
T KOG0649|consen 49 ----------PPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE 116 (325)
T ss_pred ----------CCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence 00013355568999999999998 446776665 999999754321 11111 1 2346
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
|+++-..| ..+-++.++.|+.++-||+++++.. .+.+|.+.|.++.-......+++|+.||++++||+++++.+..+.
T Consensus 117 INam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 117 INAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 89999999 5555666668999999999999987 688999999999997767789999999999999999999877544
Q ss_pred EEeccc--ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 510 ICLQGK--KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 510 ~~~~~~--~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
..-... ...-+..|.+++.+ ..++++| ....+.+|.+......... ...+++..+.|-. +.+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~---edWlvCG-gGp~lslwhLrsse~t~vf---pipa~v~~v~F~~--d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVN---EDWLVCG-GGPKLSLWHLRSSESTCVF---PIPARVHLVDFVD--DCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEecc---CceEEec-CCCceeEEeccCCCceEEE---ecccceeEeeeec--ceEEEecccc
Confidence 321111 11134557777764 4666655 4567899999887666554 3456677778854 5788888888
Q ss_pred cEEEEEcC
Q 004410 588 NIYIWNYS 595 (755)
Q Consensus 588 ~I~iWd~~ 595 (755)
.|.-|.+.
T Consensus 267 ~v~~~~l~ 274 (325)
T KOG0649|consen 267 HVQSYTLN 274 (325)
T ss_pred ceeeeeec
Confidence 89988875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=139.27 Aligned_cols=258 Identities=20% Similarity=0.349 Sum_probs=178.3
Q ss_pred ccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 285 GSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 285 ~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+|..+.|.++.. .||||+.|..|+||.+..+..-. ++
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----------------------------------------~~ 52 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----------------------------------------GD 52 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC-----------------------------------------Cc
Confidence 5799999998766 99999999999999987654210 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCC--------C-----C---eEEEEE-
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG--------I-----D---RCLRVF- 425 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~--------s-----~---~~~~~~- 425 (755)
.. -..+..+..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.+
T Consensus 53 ~~------------V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr 120 (434)
T KOG1009|consen 53 MK------------VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR 120 (434)
T ss_pred ee------------EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec
Confidence 00 01134577899999999999999 99999999999999765 2 1 112222
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
.|...|..++|+| +++++++++.|..+++||+..+++. ...+|...+..++|.|-++++++-+.|...+.+.+...+.
T Consensus 121 ~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 121 GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 3899999999999 9999999999999999999999988 5778889999999999999999999999888888876665
Q ss_pred eeeeeEE-ecccc-cC---------CC----CCeEEEEEcCCCCCEEEEEEC----CC-----cEEEEECCcceeeEEEe
Q 004410 505 YQQNQIC-LQGKK-KL---------PG----KRITGFQFSPSDPSKVIVTSA----DS-----LVRVLCGENVVGKFKAS 560 (755)
Q Consensus 505 ~~~~~~~-~~~~~-~~---------~~----~~I~~v~fsp~d~~~l~s~s~----Dg-----~I~iwd~~~~~~~~~~~ 560 (755)
....... +.... .. |. .-...++|+| ++.++++... .+ ..++++..........
T Consensus 200 ~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~- 277 (434)
T KOG1009|consen 200 IKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR- 277 (434)
T ss_pred eeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee-
Confidence 5443311 11111 01 11 1134467899 8888887532 22 3355654433222211
Q ss_pred eeccCCceEEEEEec------------------CCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 561 AFRVAGSQMFATFTS------------------DGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp------------------dg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+.....+...+.|+| -+..++.++. ..|+|||..+..+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P 333 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP 333 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc
Confidence 112222333333333 2233455554 5899999987664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=155.46 Aligned_cols=251 Identities=20% Similarity=0.199 Sum_probs=173.9
Q ss_pred eccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC--CEEEEEcCCCcEEEE
Q 004410 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG--QYLASGGEDGTVRVW 311 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg--~~LaSgs~Dg~I~vW 311 (755)
...+.++.|+|... ++|.|..+|.|.+||+......+.. ........|..+|+.+.|-.+. .-+++++.||.|..|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 34577899999876 6677888999999999876653221 1222345699999999997754 449999999999999
Q ss_pred EccCCeeeeeeec------------CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC-
Q 004410 312 KVIEHERLDGFDV------------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE- 378 (755)
Q Consensus 312 dv~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (755)
++..-........ ......++.|.+.... ..+.++..+.+..-.........
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~---------------~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN---------------HFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCc---------------eEEEEcCCcEEEEEeccCCccccc
Confidence 8765433111110 0111222333333222 23344444444442222222222
Q ss_pred ---ccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCC-CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 379 ---KPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 379 ---~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~-s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
++...+..|.+.|..+.++|-+ .+++++ |-+|+||... ...++..+ .+...|++++|+|.....|+++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 4566778899999999999977 555555 9999999877 55555555 47788999999998889999999999
Q ss_pred cEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 452 KVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 452 ~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
.|.|||+..... ..........+.+.|+++|+.|++|...|++++|++...
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 999999976432 233333566778889999999999999999999999643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=150.61 Aligned_cols=292 Identities=21% Similarity=0.268 Sum_probs=206.6
Q ss_pred ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcce
Q 004410 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (755)
Q Consensus 273 ~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (755)
.+.....|..|.|.|..|.|+..|..|++|+.|..|.+||+..+..+..+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------------------ 180 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------------------ 180 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------------------
Confidence 33444568899999999999999999999999999999999877643222
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCC-CCeEEEE---E
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVG-IDRCLRV---F 425 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~-s~~~~~~---~ 425 (755)
..||...|....|.|.. .+++++.||.|++=.+. ++.+..+ .
T Consensus 181 -------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 181 -------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred -------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 24687888777888754 89999999999998764 3443322 2
Q ss_pred ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCc---ceEEEEEccCC-CeEEEEeCCCcEEEE
Q 004410 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIRE---IVSAVCYCPDG-KGGIVGTMTGNCRFY 497 (755)
Q Consensus 426 ~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~---~V~~v~~spdg-~~la~gs~dg~I~iw 497 (755)
.|.+.|.-++.-|.+..-|.+++.|+.|.-+|++..... ....... ...+++..|.. ..+++|+.|..+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 599999999999988889999999999999999875432 2222222 56889999955 489999999999999
Q ss_pred ECCCCeEeeee----eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee---------------eEE
Q 004410 498 DIKDNQLYQQN----QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG---------------KFK 558 (755)
Q Consensus 498 D~~~~~~~~~~----~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---------------~~~ 558 (755)
|.+.-...... +.+...........|++++|+. ++.-+++...|-.|+++.-.-... .++
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 98754332100 0000001112345799999998 778888888999999995322111 133
Q ss_pred EeeeccCCceEEEE-EecCCCEEEEEeCCCcEEEEEcCCCCcccC--CCccccceeeeecCCeEEEEcCCCCCcC
Q 004410 559 ASAFRVAGSQMFAT-FTSDGKHVVSPSEDSNIYIWNYSNQDKSSS--RSKSIWSCESFLSHNVSVAIPWVGLETT 630 (755)
Q Consensus 559 ~~~~~~~~~v~~l~-fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~f~~~~~~va~~w~g~~~~ 630 (755)
+ ..+...|..+- |-|...|+++|+.-|.|.||+-.+++-+.. --+.+..| ..+|+-...++-+|+...
T Consensus 389 G--HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC--LEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 389 G--HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC--LEPHPHLPVLASSGIDHD 459 (559)
T ss_pred c--cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec--cCCCCCCchhhccCCccc
Confidence 3 33444566665 478899999999999999999988873322 22223333 444555555666666543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=152.68 Aligned_cols=271 Identities=20% Similarity=0.221 Sum_probs=183.4
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
+.-..+.|+|-...++++...-.|+|||.+.++.+..|....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-------------------------------------- 1106 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-------------------------------------- 1106 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------------------------------
Confidence 355678899988899999878899999999988765554221
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCC-----CCeEEEEEe--------cC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVG-----IDRCLRVFS--------HN 428 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~-----s~~~~~~~~--------h~ 428 (755)
.....|+++.+.+.. .+++++.||.||||+-- ..+.+.-+. ..
T Consensus 1107 ---------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r 1165 (1387)
T KOG1517|consen 1107 ---------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR 1165 (1387)
T ss_pred ---------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCC
Confidence 123467788877643 89999999999999632 223333321 11
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+.=.-+.|.. ...+|++++.-..|+|||....+++.- ......|+++.-+- .|+.|++|..||.|++||.+.....
T Consensus 1166 ~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1166 GTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 1113356776 444555555578999999998887742 23445577775543 5799999999999999999865442
Q ss_pred eeeeEEecccccCCCCC--eEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeEEEeeeccC--C-ceEEEEEecCCCE
Q 004410 506 QQNQICLQGKKKLPGKR--ITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKFKASAFRVA--G-SQMFATFTSDGKH 579 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~--I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~--~-~v~~l~fspdg~~ 579 (755)
.. ....+.|... |..+.+.+.+-..|++|+.+|.|++||++.. ...+... ..|. + ..+++..+++...
T Consensus 1245 s~-----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-v~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1245 SL-----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-VAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred cc-----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-eeccccCccceeeeeccCCCe
Confidence 11 1112334444 9999998855557999999999999998862 2222221 1121 3 4899999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCc--------ccCCCccccceeeeecCCeEEEE
Q 004410 580 VVSPSEDSNIYIWNYSNQDK--------SSSRSKSIWSCESFLSHNVSVAI 622 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~~~--------~~~~~~~~~~~~~f~~~~~~va~ 622 (755)
||+|+. +.|+||++....- -..+.+...+|..|..|..-+|+
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence 999999 9999999976541 11223333466666666544433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=143.25 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=140.8
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..++|+++|..|++|+.||++|||+....... .+..+|.+.|.+|.|+|||++|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 45999999999999999999999996544332 3356899999999999999999999999 999999999966
Q ss_pred eeeeecCCC--CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc-CccceEecCCCCCEEEEE
Q 004410 319 LDGFDVQDT--DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL-EKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 319 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~ 395 (755)
+........ ....+.|..+.....+.+..... ....+..+....|.-. --+..+...-...|.+++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-----------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-----------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecC-----------CCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 555442211 11223333333221111111100 0111111111111110 001112222345699999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+.+| +++.|++||.|-|++..+-++++..+ |...|+.+.|+| +.+++++.+.|....|..+.-
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999 99999999999999999999988885 999999999999 999999999998888877654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=141.68 Aligned_cols=280 Identities=17% Similarity=0.188 Sum_probs=192.1
Q ss_pred cccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 282 AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.|...-+.|..+|||+|| |||..--.|++||+..-....+-......+..... .+...+...+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiL--------------sDD~SK~v~L~- 113 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEIL--------------SDDYSKSVFLQ- 113 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEe--------------ccchhhheEee-
Confidence 477888999999999986 55666779999999776544332221111111111 11111111111
Q ss_pred cCCceEEEeCCcceeccCcc-c-eEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 361 SSDLTCVVLPPKVFRLLEKP-L-HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~-~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
..+...+..+. . ..+. -...-.+|+++.-. -|+.++....|+-++++.|..+..|. ..+.++++..
T Consensus 114 ---------~DR~IefHak~G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 114 ---------NDRTIEFHAKYGRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred ---------cCceeeehhhcCeeeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 11100000000 0 0000 01223467777655 56666667789999999999999997 5589999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc-------CCc-----ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-------IRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-------~~~-----~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
++ ...+|++|+.+|.|-.||.++...+.... +.. .|+++.|+.+|-.+++|+.+|.+.|||++..+.
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99 88899999999999999999876553221 222 399999999999999999999999999998876
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+.. +.....-+|..+.|.+.+..-.++......++|||-.+....... .....+..+|+-|++-++++|-
T Consensus 263 l~~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi---Ept~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 263 LLV-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI---EPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred eee-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec---cccCCcCceeeecCCceEEEec
Confidence 542 223345678999998866666677777789999998776655443 3455689999999999999999
Q ss_pred CCCcEEEEEcCCC
Q 004410 585 EDSNIYIWNYSNQ 597 (755)
Q Consensus 585 ~Dg~I~iWd~~~~ 597 (755)
+++.+..|=+..-
T Consensus 333 e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 333 ESSKMHTYYIPSL 345 (703)
T ss_pred CCCcceeEEcccc
Confidence 9988887766543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=147.69 Aligned_cols=227 Identities=18% Similarity=0.283 Sum_probs=167.7
Q ss_pred ccccccc---cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CC
Q 004410 222 RGWLKKL---GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DG 296 (755)
Q Consensus 222 ~~w~~~~---~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg 296 (755)
..|++++ +.+.+|..-|+++.|+.+|.+|++|+.|-++.|||.-..+ .+.. .-.||.+.|.+++|-| +.
T Consensus 34 s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhs-----I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 34 STWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-LLHS-----ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred cHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-eeee-----eecccccceeEEeeeccCCC
Confidence 4455554 3588999999999999999999999999999999976322 1211 1358999999999999 56
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
+.++||..|..|+|+|+...+.-.. . .-
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~-d---------------------------------------------------~~ 135 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGM-D---------------------------------------------------HG 135 (758)
T ss_pred eEEEeccCcceEEEEeccccccccc-c---------------------------------------------------cC
Confidence 7999999999999999875321000 0 00
Q ss_pred cCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE----ecCCcEEEEEEeeCCCCE
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF----SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~----~h~~~V~~i~fsp~d~~~ 443 (755)
...+.+.+..|...|..|+-.|++ .+.+++.||+|+-+|++.... ...+ ..--...|+.++|.+..+
T Consensus 136 ~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~ 215 (758)
T KOG1310|consen 136 MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYY 215 (758)
T ss_pred ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCce
Confidence 023345567899999999999998 899999999999999975321 1111 122457899999999999
Q ss_pred EEEEeCCCcEEEEEcCCC------------------eEEEe--ccCC-----------cceEEEEEccCCCeEEEEeCCC
Q 004410 444 FISGSIDGKVRIWEVRRC------------------QVVDY--TDIR-----------EIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~------------------~~~~~--~~~~-----------~~V~~v~~spdg~~la~gs~dg 492 (755)
|++|+.|-..++||.+.. .++.. .+|- ..++-+.|+|+|.-|++.-..-
T Consensus 216 laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE 295 (758)
T KOG1310|consen 216 LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE 295 (758)
T ss_pred EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe
Confidence 999999999999995421 11211 1111 1257789999999999977777
Q ss_pred cEEEEECCCCeEee
Q 004410 493 NCRFYDIKDNQLYQ 506 (755)
Q Consensus 493 ~I~iwD~~~~~~~~ 506 (755)
.|+++|+..++...
T Consensus 296 hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 296 HVYLFDVNEDKSPT 309 (758)
T ss_pred EEEEEeecCCCCce
Confidence 89999998766543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-13 Score=139.51 Aligned_cols=191 Identities=18% Similarity=0.243 Sum_probs=151.3
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR---------- 460 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~---------- 460 (755)
.+.+ -|+.+-.-|.|.+.|....+..+.+. ....|+||.|-|.+...|+.+-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3455 67778888999999877644444342 4578999999998889999999999999997631
Q ss_pred ----C---------------eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 461 ----C---------------QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 461 ----~---------------~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+ .+..|......|..++|+|||++||+.+.||.++|||..+.+++.. .+.--+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~--------mkSYFG 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV--------MKSYFG 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH--------HHhhcc
Confidence 0 0112333456789999999999999999999999999998776532 333456
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec--------------------------
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-------------------------- 575 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-------------------------- 575 (755)
.+.|++|+| |+++|++|+.|..|.||...+......+ .+|...|..++|.|
T Consensus 334 GLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~ 410 (636)
T KOG2394|consen 334 GLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFE 410 (636)
T ss_pred ceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeecccccccccccccccccccccchhcccc
Confidence 889999999 9999999999999999999887666666 88999999999982
Q ss_pred ---------CC-------------CEEEEEeCCCcEEEEEcCCCC
Q 004410 576 ---------DG-------------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 ---------dg-------------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++ -.|.+.+.|-.+.+||+....
T Consensus 411 ~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 411 IRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred cccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 136778899999999998665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=143.90 Aligned_cols=233 Identities=14% Similarity=0.105 Sum_probs=155.7
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc---CCCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG---EDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs---~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.++|...... +.+..+...+...+|||||+.||..+ .+..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------------- 237 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-------------
Confidence 3688888654321 23445677899999999999998754 23568888887664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg-- 409 (755)
+..+.+| +..+.|+||| .|+.. +.++
T Consensus 238 -----------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 238 -----------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred -----------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 1112222 3357899999 66544 4454
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-C--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D-g--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+...+....|+| +++.|+..+.+ + .|.++|+.++....+..........+|+|||++|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 48999999988776666666788999999 89988776654 4 45555777776655544445567789999999998
Q ss_pred EEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc---EEEEECCcceeeEEEe
Q 004410 487 VGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL---VRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~---I~iwd~~~~~~~~~~~ 560 (755)
..+.+ ..|.+||+.++.... +.. ........|+| |+++|+..+.++. +.+++..... ....
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~-----Lt~-----~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l- 413 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQV-----LTD-----TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARL- 413 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEE-----eCC-----CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-eEEC-
Confidence 86654 358889998876432 111 11234578999 8898988887765 5556653222 2222
Q ss_pred eeccCCceEEEEEec
Q 004410 561 AFRVAGSQMFATFTS 575 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp 575 (755)
..+.+.+...+|+|
T Consensus 414 -~~~~~~~~~p~Wsp 427 (429)
T PRK03629 414 -PATDGQVKFPAWSP 427 (429)
T ss_pred -ccCCCCcCCcccCC
Confidence 34667788888886
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-13 Score=131.83 Aligned_cols=205 Identities=14% Similarity=0.211 Sum_probs=165.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.|.+|++|+..+|.+..+..|.||...... .....+++..|...|++|.|+|..+.|++|+.|..-+||...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 4678889999999999999999999999876543 123456788999999999999999999999999999999873
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.+.. -+|...+..|...++++
T Consensus 86 ~~~~-----------------------------------------------------------WkptlvLlRiNrAAt~V 106 (361)
T KOG1523|consen 86 SGGT-----------------------------------------------------------WKPTLVLLRINRAATCV 106 (361)
T ss_pred CCCe-----------------------------------------------------------eccceeEEEeccceeeE
Confidence 3321 13344556688899999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE---E--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-----C---
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRV---F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-----R--- 460 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~---~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-----~--- 460 (755)
.|+|.. .+++|+.-+.|.||-.+...---+ + .+...|+++.|+| ++-+|++|+.|++.||+..- .
T Consensus 107 ~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 107 KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCC
Confidence 999998 999999999999998765543211 1 3678899999999 89999999999999999642 1
Q ss_pred ----------CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 461 ----------CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 461 ----------~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
++++ .+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 186 p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 1122 222456789999999999999999999999999987664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-12 Score=135.84 Aligned_cols=245 Identities=14% Similarity=0.208 Sum_probs=157.1
Q ss_pred cCcceeecCCCCeeEEee-CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEcc
Q 004410 237 RHGSATLKPGDHELTLGQ-RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs-~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~ 314 (755)
....++++|++++|++++ .++.|.+|++..... +.. .... ...+....|+|+|+|++|++++. ++.|.+|++.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~---~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTF---AAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEE---eeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 344589999999887764 588899999863211 111 1111 12234678999999999888764 7899999986
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+...+.. .+..+. +......+
T Consensus 111 ~~g~~~~----------------------------------------------------------~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 111 KDGIPVA----------------------------------------------------------PIQIIE-GLEGCHSA 131 (330)
T ss_pred CCCCCCC----------------------------------------------------------ceeecc-CCCcccEe
Confidence 4221100 001111 12235668
Q ss_pred EEcCCC-eE-EEEeCCCcEEEEeCCCCeEEE-------EEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCC--Ce
Q 004410 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLR-------VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR--CQ 462 (755)
Q Consensus 395 ~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~-------~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~--~~ 462 (755)
+++|++ ++ ++...++.|.+||+.+...+. ..........++|+| ++++++++.. +++|.+|++.. ++
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 899998 55 455567999999997643221 112344567899999 8998887776 89999999973 32
Q ss_pred E--EE-eccC------CcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 463 V--VD-YTDI------REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 463 ~--~~-~~~~------~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
. +. .... ......+.++|+|++|+++.. ++.|.+|++.......... .... .......+.++| +
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~----~~~~-~~~~p~~~~~~~-d 284 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE----GHQP-TETQPRGFNIDH-S 284 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe----EEEe-ccccCCceEECC-C
Confidence 2 21 1111 112346889999999999864 6889999986432111111 1111 113445789999 7
Q ss_pred CCEEEEEEC-CCcEEEEECCc
Q 004410 533 PSKVIVTSA-DSLVRVLCGEN 552 (755)
Q Consensus 533 ~~~l~s~s~-Dg~I~iwd~~~ 552 (755)
+++|+++.. +++|.+|+...
T Consensus 285 g~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEEEccCCcEEEEEEcC
Confidence 888877665 89999998653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-12 Score=127.72 Aligned_cols=295 Identities=13% Similarity=0.197 Sum_probs=187.9
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
++|++.-.-+|++..|-.|+||+.+.. ....+. ...+..|+||+|-|.+ .-|+.|+.. -|.+|.....-..
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst--~pt~Lk-----s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLK-----SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCC--CCceec-----chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 788886666788899999999985541 111111 1234679999999954 577888765 5999986432111
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
... + +.... ....+....|| ..|+.|+|.+|
T Consensus 176 ~r~---------~--------------------------~~~s~-------------~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 176 NRN---------I--------------------------RMMST-------------HHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred ccc---------c--------------------------ccccc-------------cchhheeCCCC-ceeeEEEEcCC
Confidence 000 0 00000 00112333466 78999999999
Q ss_pred C-eEEEEe-CCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc-CCCeEEEeccCCcceEE
Q 004410 400 G-FLLSSS-ADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQVVDYTDIREIVSA 475 (755)
Q Consensus 400 ~-~L~s~s-~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~~~~~~~~~~~V~~ 475 (755)
| .|++++ .|..|.|||+.++.++... ...+.++-+.|+| |+++|++++-|+..++|.. ++.....+.-..+.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 9 788777 5678999999999988776 4677899999999 9999999999999999954 44445566667779999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCC--CeEe---------eeeeEEecc-----cccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKD--NQLY---------QQNQICLQG-----KKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~--~~~~---------~~~~~~~~~-----~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.+|+|+|..|+..+. |.-++|.+.. .... ......++. ....-.+.+.+++|.| .+.++++.
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~ 363 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVI 363 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEE
Confidence 999999998876553 3444554431 1000 001111111 1122356789999999 78888876
Q ss_pred ECCC--------cEEEEECCcceee-EEEeeeccCCceEEEEEec---CCCEEEEEeCCCcEEEEEcC
Q 004410 540 SADS--------LVRVLCGENVVGK-FKASAFRVAGSQMFATFTS---DGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 540 s~Dg--------~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fsp---dg~~L~sgs~Dg~I~iWd~~ 595 (755)
-..+ .|.+||....... +..-..........++|+| +|.+|..+=..|.|.-|++.
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 5543 3556775542211 1100011112234556655 57777777777888877764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-13 Score=146.80 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=137.0
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEE--E
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRI--W 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~i--w 456 (755)
+..|...+...+|+|+| .|+.++.+ ..|++||+.+++........+....++|+| +++.|+.++ .+|.+.| |
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEE
Confidence 45577789999999999 77777654 369999999886544333334455789999 888887764 6786554 5
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
|+.++....+..+...+....|+|||+.|+..+ .+|...||++......... + . +.. ....|+| ++++
T Consensus 278 d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l-~----~~~--~~~~~Sp-DG~~ 346 (429)
T PRK01742 278 GANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---V-G----GRG--YSAQISA-DGKT 346 (429)
T ss_pred ECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---e-c----CCC--CCccCCC-CCCE
Confidence 777777777777777788999999999877655 5688888876532211110 1 1 111 3578999 8888
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|+..+.++ +.+||..+....... .. .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS--ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec--CC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 88877754 556898765433221 11 123567899999999999999999988864
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-12 Score=125.99 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=191.1
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~ 319 (755)
..|||+|+++|+.... ++.|.|..+-. ..|.+. --+.|.-+.|..|..+++ .+..|+.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-------~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-------LHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhh-------HHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 6899999999998877 78888865322 111111 135688899998887654 4567889999998765432
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+......+..++|+|+
T Consensus 85 --------------------------------------------------------------ckIdeg~agls~~~WSPd 102 (447)
T KOG4497|consen 85 --------------------------------------------------------------CKIDEGQAGLSSISWSPD 102 (447)
T ss_pred --------------------------------------------------------------EEeccCCCcceeeeECCC
Confidence 223344567888999999
Q ss_pred C--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---------------------------
Q 004410 400 G--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID--------------------------- 450 (755)
Q Consensus 400 ~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D--------------------------- 450 (755)
| .|.+..-|-.|.+|.+.+.++...--....+..++|+| ++++.+.++.-
T Consensus 103 grhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 103 GRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred cceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 9 67778889999999999888766554455678899999 89888776532
Q ss_pred ---------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee-------------
Q 004410 451 ---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN------------- 508 (755)
Q Consensus 451 ---------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~------------- 508 (755)
..+.+||-.-.-.+......-.+..+.|+|.+++|++|+.|+.+++.+--+.+...++
T Consensus 182 tgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 182 TGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred cCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 1233343221111112222356888999999999999999999988654222211000
Q ss_pred ----------------------------------------eEEeccc-----ccCCCCCeEEEEEcCCCCCEEEEEEC--
Q 004410 509 ----------------------------------------QICLQGK-----KKLPGKRITGFQFSPSDPSKVIVTSA-- 541 (755)
Q Consensus 509 ----------------------------------------~~~~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s~-- 541 (755)
...++.. +..+...+.-++|++ |..++++-..
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~ 340 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKY 340 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCC
Confidence 0000000 111233466789999 8787777644
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-+.+.+||+++...-.. .....+|....|.|....|+.+.....+++|......
T Consensus 341 PnalW~Wdlq~l~l~av---LiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAV---LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CceEEEEechhhhhhhh---hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 36789999887543222 2345689999999999999888888899999876543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-12 Score=139.43 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=156.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---CCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.++|..... .+.+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-------------- 239 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-------------- 239 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--------------
Confidence 467777764322 2345678889999999999999988763 467999998766421
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCc-
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT- 410 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~- 410 (755)
.+..+.+.+...+|+|+| .|+ +.+.++.
T Consensus 240 -------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 240 -------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred -------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 112234456678999999 554 5566655
Q ss_pred -EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 411 -VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 411 -V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
|++||+.+++......+........|+| +++.|+..+. +| .|++||+.++....+......+....|+|||+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7778998887766555666678899999 8888877664 33 68888988877666555555677789999999998
Q ss_pred EEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC------CcEEEEECCcceeeE
Q 004410 487 VGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD------SLVRVLCGENVVGKF 557 (755)
Q Consensus 487 ~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D------g~I~iwd~~~~~~~~ 557 (755)
....+ ..|.+||+.++.... +. ....+..+.|+| ++++|+..+.+ ..+.+++.......
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~-----lt-----~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~- 417 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERI-----LT-----SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER- 417 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEe-----cc-----CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCceE-
Confidence 87654 358888886654321 11 112466789999 77777665543 24667776543222
Q ss_pred EEeeeccCCceEEEEEec
Q 004410 558 KASAFRVAGSQMFATFTS 575 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fsp 575 (755)
. ....+.+...+|+|
T Consensus 418 ~---l~~~~~~~~p~Wsp 432 (435)
T PRK05137 418 E---VPTPGDASDPAWSP 432 (435)
T ss_pred E---ccCCCCccCcccCC
Confidence 1 11233455666765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=128.73 Aligned_cols=285 Identities=19% Similarity=0.327 Sum_probs=181.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc------------ccEEEEEEecCCC--EEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------~~V~~l~fspdg~--~La 300 (755)
.+-+.++.|..+|.+||+|..+|+|.++.-....+. .+....+++.|+ ..|..+.|.++++ .++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 456778999999999999999999999986544331 112223344453 4789999998764 566
Q ss_pred EEcCCCcEEEEEccCCeeee-eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee-eeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS-LRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 378 (755)
..+.|.+|++|.+....... .+...... ....+..... ..+..+..+...+.+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~-------------------~~~~~~~lr~p~~~~~~~~vea~prRv~---- 159 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG-------------------PPGTITSLRLPVEGRHDLEVEASPRRVY---- 159 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccC-------------------CCCccceeeceeeccccceeeeeeeeec----
Confidence 67789999999987654322 11110000 0000000000 00111111111111111
Q ss_pred ccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCC-CeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s-~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
-.+|.--|.++.++.|+..+.+..|=.|.+|+++- .++..... ...-|++..|+|...+.|+-.+.
T Consensus 160 -----aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 160 -----ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred -----cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 14688899999999999555556788899999873 33333321 34568999999988899999999
Q ss_pred CCcEEEEEcCCCeEEE-----------------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEE
Q 004410 450 DGKVRIWEVRRCQVVD-----------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQIC 511 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~-----------------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~ 511 (755)
.|+|++-|++...+-. +...-..|..+.|+++|+++++-.. -+|++||+. ..+.+.+.+++
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9999999999543221 1112245888999999999988553 589999994 45555444432
Q ss_pred eccccc----CCCCC---eEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 512 LQGKKK----LPGKR---ITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 512 ~~~~~~----~~~~~---I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
-.-..+ ..... -..++|+. ++..+++|+..+.+++++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCC
Confidence 111110 01112 23578887 78899999999999999944
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-11 Score=118.40 Aligned_cols=199 Identities=16% Similarity=0.246 Sum_probs=139.9
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEEEe---cCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCCC
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRVFS---HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRRC 461 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~~---h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~~ 461 (755)
-..+|.++.+.++. |+.. ..+.|+||... .-+.++.+. ....+.+++-+. +..+|+. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 35678899998875 3333 35789999877 445555553 233444444332 3334443 556699999999876
Q ss_pred eE---EEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.. .....|...|.|++.+-+|..+|+++..|+ |+|||..++.+++++. .......|++++|+| +..+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp-~~s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP-NSSWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC-CccEEE
Confidence 65 678899999999999999999999999998 8999999999987643 334557899999999 999999
Q ss_pred EEECCCcEEEEECCcceeeEE----------------E------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 538 VTSADSLVRVLCGENVVGKFK----------------A------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~~----------------~------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+.+..|+++|+.+........ . ...-..+...-++|-.+-+.++..+.||.-+-+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999999999998765321111 0 000113345556666665666666677776655554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-12 Score=140.48 Aligned_cols=233 Identities=18% Similarity=0.190 Sum_probs=153.0
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.+||..... .+.+..|...+.+.+|+|||+.|+.++.+ ..|.+|++.+++...
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 468888865321 13355677789999999999999987643 469999987664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg-- 409 (755)
+..+.+....+.|+|+| .|+ +.+.++
T Consensus 243 --------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 243 --------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred --------------------------------------------------eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 11122233467899999 554 555555
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CCc--EEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~--V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+.......+|+| +++.|+..+. +|. |+++|+.+++...+.........++|+|||+.|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999988766555655667899999 8888877664 444 7777877776655443444456789999999998
Q ss_pred EEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEe
Q 004410 487 VGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~ 560 (755)
..+.++ .|.+||+.++.... +. +........|+| ++++|+..+.+ +.|.+++..... ....
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~-----Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l- 418 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRT-----LT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV-RQRL- 418 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEE-----CC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc-eEEc-
Confidence 876543 59999998876542 11 111234568999 78877766553 356667664322 1111
Q ss_pred eeccCCceEEEEEec
Q 004410 561 AFRVAGSQMFATFTS 575 (755)
Q Consensus 561 ~~~~~~~v~~l~fsp 575 (755)
..+.+.+..++|+|
T Consensus 419 -~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 -VSADGEVREPAWSP 432 (433)
T ss_pred -ccCCCCCCCCccCC
Confidence 22345566667765
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-11 Score=127.61 Aligned_cols=311 Identities=15% Similarity=0.176 Sum_probs=197.8
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-----cC-----CCcEE
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-----GE-----DGTVR 309 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-----s~-----Dg~I~ 309 (755)
..+++++|+++|.... +.|+|++.......+. -....+.++.|+|-|.||.|= .. .-.++
T Consensus 39 v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt---------~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLC---------VELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred eEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEE---------eccceeeeeeecccccccccccccccccCCCCCCCcee
Confidence 4788999998887654 5789998765432111 111268899999999999872 11 24578
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++.++.....+........+..|+.+..-.... ....+..+....++. +.+. -|..
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-----------------v~nev~f~~~~~f~~---~~~k--l~~~ 166 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-----------------VSNEVQFYDLGSFKT---IQHK--LSVS 166 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhh-----------------hcceEEEEecCCccc---eeee--eecc
Confidence 99999865544444333332344444333211110 111222222222211 1222 2577
Q ss_pred CEEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeC--C-----
Q 004410 390 EVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSI--D----- 450 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s-----~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~--D----- 450 (755)
.|..+.++|.. .+++ .+.-..|+||.+.....-..+. ....=..+.|++....+|+.++. |
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~S 246 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNAS 246 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCcc
Confidence 89999999984 4443 3566789999876322221111 12222346777733334444432 2
Q ss_pred ----CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 451 ----g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
.++++.++....++.-....++|.+++|+|+|+.+++ |-.--.+.|||++..-.. ....++-+
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~-----------df~egpRN 315 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF-----------DFPEGPRN 315 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE-----------eCCCCCcc
Confidence 4688888885556555566889999999999987766 566788999999865432 22456778
Q ss_pred EEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcC
Q 004410 525 GFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYS 595 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~ 595 (755)
++-|+| .+++|+.++.+ |.|-|||..+.+..... ....-+-+.|+|||++|+|+.. |+.++||++.
T Consensus 316 ~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~----~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF----KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccc----ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 899999 88888888764 78999999884433332 2334566899999999999875 7899999997
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
...
T Consensus 391 G~~ 393 (566)
T KOG2315|consen 391 GSL 393 (566)
T ss_pred Cce
Confidence 654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=134.98 Aligned_cols=200 Identities=19% Similarity=0.313 Sum_probs=138.6
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
-.|++--|+.|-..|.|.+.+... .++..+.... ..-.+..|+|++|-|.+ ..++.+-.+|.+.++|..-.
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~-r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~----- 252 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEE-RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV----- 252 (636)
T ss_pred cCCCCcceEEeeccCceEEecchh--hHHHHhhhhc-ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----
Confidence 346777788888889998887554 2233322221 11234789999999944 45556677999999987211
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG- 400 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~- 400 (755)
.....+....+. ....+.+... .......|+..+.--.+.|...+|+|||
T Consensus 253 --~~~t~p~~~~~k---~~~~f~i~t~------------------------ksk~~rNPv~~w~~~~g~in~f~FS~DG~ 303 (636)
T KOG2394|consen 253 --CGATAPSYQALK---DGDQFAILTS------------------------KSKKTRNPVARWHIGEGSINEFAFSPDGK 303 (636)
T ss_pred --ccCCCCcccccC---CCCeeEEeee------------------------eccccCCccceeEeccccccceeEcCCCc
Confidence 111111100000 0000000000 0001123455555556689999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~ 478 (755)
+||+.+.||.+||+|..+.+++..++ .-+...|++|+| |++|+++|+.|-.|.||.+..++++ .-.+|+..|..|+|
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 99999999999999999988877764 567899999999 9999999999999999999999999 56789999999999
Q ss_pred cc
Q 004410 479 CP 480 (755)
Q Consensus 479 sp 480 (755)
.|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 87
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-13 Score=139.05 Aligned_cols=229 Identities=13% Similarity=0.176 Sum_probs=186.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.-..+.++.+|++|+.|+..|.|-.+|+.++....++..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----------------------------------------- 169 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----------------------------------------- 169 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------------------------------------
Confidence 345789999999999999999999999998876544431
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
...|.++.|-.+..+++....+.++|||- .|..+..+.....|..+.|.| -.-+|+
T Consensus 170 ----------------------~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v~rLeFLP-yHfLL~ 225 (545)
T KOG1272|consen 170 ----------------------METVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRVARLEFLP-YHFLLV 225 (545)
T ss_pred ----------------------hhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCchhhhcccc-hhheee
Confidence 24577888888776666677899999994 566777777778899999999 788889
Q ss_pred EEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
+++..|.++.-|+.+++++ .+....+.+..++-+|-.-.+-+|...|+|.+|.......+.. ...|.++|.
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~ 297 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVS 297 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcc
Confidence 9999999999999999988 5666677888999999888999999999999999988776532 445788999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++++.+ ++.++++++.|..++|||+....+..... ...+...++||..| +++.+....|.||.
T Consensus 298 siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~---tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 298 SIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYR---TPHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred eEEECC-CCcEEeecccccceeEeeeccccccceee---cCCCcccccccccc--ceeeecCCeeeeeh
Confidence 999999 99999999999999999999876544432 24466778888665 44455556899996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-11 Score=132.51 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=138.4
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE-eCCC--cEEEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSS---ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDG--KVRIWE 457 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s---~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~Dg--~V~iwd 457 (755)
..+...+...+|+||| .|+..+ .+..|++||+.+++..........+..+.|+| |++.|+.. +.+| .|++||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEE
Confidence 3456678999999999 666554 24579999999887655544455566789999 88877754 4455 599999
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+.+++...+......+....|+|||+.|+..+.+ |. |+++|+.++..... . ..........|+| +++
T Consensus 274 ~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t------~~~~~~~~~~~Sp-DG~ 343 (429)
T PRK03629 274 LASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---T------WEGSQNQDADVSS-DGK 343 (429)
T ss_pred CCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---e------cCCCCccCEEECC-CCC
Confidence 9998888777666778899999999999877754 44 55557766644321 1 1223456788999 777
Q ss_pred EEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc---EEEEEcCCC
Q 004410 535 KVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN---IYIWNYSNQ 597 (755)
Q Consensus 535 ~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~---I~iWd~~~~ 597 (755)
+|+..+.+ ..|.+||..+....... .........|+|||++|+.++.++. +++++++..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQVLT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEeC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 77766543 35788887665332211 1123346789999999999998865 677777544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=135.95 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=137.3
Q ss_pred eecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 45677889999999999999887643 359999987765311
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCcEEEE--eCCCCeEEEEEecCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLW--QVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iW--dl~s~~~~~~~~h~~~V~ 432 (755)
+....+.+....|+||| .|+ +.+.++...|| |+.++...+...+...+.
T Consensus 235 ---------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~ 287 (427)
T PRK02889 235 ---------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDT 287 (427)
T ss_pred ---------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCc
Confidence 11122334578999999 555 56778776666 455555443334555667
Q ss_pred EEEEeeCCCCEEEEEeC-CCcEEEEE--cCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC---cEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSI-DGKVRIWE--VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~-Dg~V~iwd--l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~ 506 (755)
...|+| |++.|+..+. +|...||. +.++...............+|+|||++|+..+.++ .|.+||+.++....
T Consensus 288 ~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 889999 8888776554 45656665 45554443332333345688999999999877654 59999998876532
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC-c--EEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS-L--VRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
. . .........|+| +++.|+.++.++ . +.+.+... ...... ..+.+.+...+|+|
T Consensus 367 l-----t-----~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l--~~~~g~~~~p~wsp 424 (427)
T PRK02889 367 L-----T-----DTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDG-RIKQRL--SVQGGDVREPSWGP 424 (427)
T ss_pred c-----c-----CCCCccCceECC-CCCEEEEEEecCCCEEEEEEECCC-CceEEe--ecCCCCCCCCccCC
Confidence 1 1 112235679999 777777666543 3 33444422 111111 23445566677766
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=121.82 Aligned_cols=195 Identities=11% Similarity=0.149 Sum_probs=152.3
Q ss_pred CEEEEEEcCCCeEEEEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--
Q 004410 390 EVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-- 465 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-- 465 (755)
.|.-+-|+.+ +++..+.+ +.+++++.+.+..+..+.....|.++.++. +.|+++-. ..|+|||+++.+++.
T Consensus 48 ~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhh
Confidence 4555666654 44444433 559999999999999998999999999975 44555443 449999999998874
Q ss_pred --eccCCcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 466 --YTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 466 --~~~~~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+..+...+.++++++.+.+++.- ...|.|.+||+.+-+.... ...|.+.+.+++|++ +|.+||+++.
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~--------I~aH~~~lAalafs~-~G~llATASe 193 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT--------INAHKGPLAALAFSP-DGTLLATASE 193 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE--------EEecCCceeEEEECC-CCCEEEEecc
Confidence 22445567777777788888873 3478999999998776643 335889999999999 9999999999
Q ss_pred CCc-EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSL-VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~-I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|+ |||+...+....+.+..--....|.+++|+|++++|++.|..++|+||.++...
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 987 689999887766665333345678999999999999999999999999998764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.9e-13 Score=131.49 Aligned_cols=189 Identities=15% Similarity=0.264 Sum_probs=136.0
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCC-CEEEEEeCCCcEEEEEcCCCeEE
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDD-NYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
..|.-+.|..+. .|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .+|.+...|-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccceeE
Confidence 345667888887 45556788899999999888777774 778899999999 77 56677778999999999999888
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+...+..+..++|+|||++.+..+.-.....+++...+.- .+.++.+...-..+++.|+| |+..++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W-----~ll~~f~~dT~DltgieWsP-dg~~la------- 194 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW-----ILLKEFKLDTIDLTGIEWSP-DGNWLA------- 194 (447)
T ss_pred EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH-----HHHHhcCCCcccccCceECC-CCcEEE-------
Confidence 77777778899999999999999886533222332211110 12223444556789999999 766665
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|||.--....+. ....-.+..++|+|.+++|+.|+.|+.++|-|--+
T Consensus 195 --Vwd~~Leykv~a---Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 195 --VWDNVLEYKVYA---YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred --Eecchhhheeee---eeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 455221111111 22334678899999999999999999999876544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-11 Score=133.05 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=143.8
Q ss_pred eEecCCCCCEEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EE
Q 004410 382 HEFQGHSSEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VR 454 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~-~L~s~s~---Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~ 454 (755)
..+..|...+...+|+||| .|+..+. +..|++||+.+++......+.+.+....|+| +++.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 3445677889999999999 7776653 4689999999988765555677788999999 887664 5566655 78
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+||+.+++...+..+........|+|||+.|+..+. +| .|++||+.++..... . .....+....|+|
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l---t------~~~~~~~~~~~Sp- 343 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI---S------FGGGRYSTPVWSP- 343 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe---e------cCCCcccCeEECC-
Confidence 889999888877777777788999999999988764 33 588889877654321 0 1123456788999
Q ss_pred CCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCC
Q 004410 532 DPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED------SNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D------g~I~iWd~~~~~ 598 (755)
+++.|+....+ ..|.+||........ ......+..+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~----lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERI----LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEe----ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 77877776543 357778865432221 1122346778999999998876553 257778876543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-10 Score=119.49 Aligned_cols=315 Identities=15% Similarity=0.202 Sum_probs=204.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC------------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------------ 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D------------ 305 (755)
+..+.+||.|.+|++....| |.+|......+ +..+ -| ..|.-+.|+|.++||.|=+..
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-l~~~-------~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-LVRF-------RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhh-eeee-------ec-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 44589999999999877765 89998664442 2211 12 358899999999999996543
Q ss_pred ---CcEEEEEccCCeeeeeeecCCCC--Cc-eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 306 ---GTVRVWKVIEHERLDGFDVQDTD--PS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 306 ---g~I~vWdv~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
..+.|||+.++..+..+...... .. .+.|+.++.-.... ....+.+... ...+...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----------------v~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----------------VGSSLYIHEI-TDNIEEH 166 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----------------ccCeEEEEec-CCccccC
Confidence 35999999999988887765443 11 33333332211111 0111111111 1112223
Q ss_pred cceEecCCCCCEEEEEEcCCC---eEEE-----EeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe--
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG---FLLS-----SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-- 448 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~---~L~s-----~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs-- 448 (755)
|.+.+. ...|....|+|.+ .|+. .+.++++++|.+..+..+.+-. ....=..+.|++ .+++++.--
T Consensus 167 p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t 243 (561)
T COG5354 167 PFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMT 243 (561)
T ss_pred chhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEE
Confidence 333333 3568888899874 4443 4578899999998777665543 222234567777 666654421
Q ss_pred ---------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 449 ---------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 449 ---------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
....++|+++....+....+..++|...+|.|.++.+++. -..-.+.++|++++ +...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~---------- 312 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY---------- 312 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------
Confidence 1246889998866655444778999999999998887764 47888999999987 3321
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe------CCCc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS------EDSN 588 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs------~Dg~ 588 (755)
.....-+.+.|+| ..+++++++-| |.|-+||.......... . ......-+.|+|||+++.+.. .|..
T Consensus 313 ~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~--~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 313 FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGA--F-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEE--e-ecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 1233446678999 88888887765 67999997764433322 1 223345567999999998875 4889
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|.|||+....
T Consensus 389 i~l~~v~g~~ 398 (561)
T COG5354 389 IKLWDVYGAK 398 (561)
T ss_pred eEEEEecCch
Confidence 9999997654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-11 Score=131.96 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=139.4
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
..|.+++..... .+.+..+...+...+|+|||++||.+..+ ..|++|++.+++...
T Consensus 170 ~~l~~~d~~g~~--------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------- 228 (417)
T TIGR02800 170 YELQVADYDGAN--------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------- 228 (417)
T ss_pred ceEEEEcCCCCC--------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-------------
Confidence 356677754221 13455567789999999999999987654 479999987664211
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK-- 409 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg-- 409 (755)
+..+...+..++|+|++ .|+ +.+.++
T Consensus 229 --------------------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 229 --------------------------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred --------------------------------------------------eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 11233445568899998 554 444444
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-C--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-G--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D-g--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
.|++||+.+++......+........|+| +++.|+..+.. + .|+++|+.+++...+......+..+.|+|+|++|+
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred cEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 59999998887665555555566789999 88887766543 3 58888988887766665666778899999999999
Q ss_pred EEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 487 VGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 487 ~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.++.++ .|.+||+.++.... +.. ........|+| ++++|+..+.++
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~~-----l~~-----~~~~~~p~~sp-dg~~l~~~~~~~ 386 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGERV-----LTD-----TGLDESPSFAP-NGRMILYATTRG 386 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeEE-----ccC-----CCCCCCceECC-CCCEEEEEEeCC
Confidence 988776 78999998765432 111 11233458999 777777666554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-10 Score=120.15 Aligned_cols=275 Identities=17% Similarity=0.187 Sum_probs=171.7
Q ss_pred eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 250 LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 250 lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
+++-..++.|.|.|..+.. ...++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..
T Consensus 9 ~V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----- 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----- 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------
T ss_pred EEEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----
Confidence 3456678999999976532 2223433333334577999999999999999999999999886655432
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE-eC
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS-SA 407 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~ 407 (755)
......++++++| +++++ ..
T Consensus 77 ----------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 77 ----------------------------------------------------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp ----------------------------------------------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred ----------------------------------------------------------CCCcceEEEcCCCCEEEEEecC
Confidence 1235679999999 55544 57
Q ss_pred CCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeE--EEeccCCcceEEE
Q 004410 408 DKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQV--VDYTDIREIVSAV 476 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~--~~~~~~~~~V~~v 476 (755)
.+.|.++|.++.+.++.+. ....+..|..+| ....++..-. -+.|.+.|...... .............
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 8999999999999998874 234678888888 6665555544 48888889776532 2445556677889
Q ss_pred EEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeE-------------------------------Eecccc--------
Q 004410 477 CYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQI-------------------------------CLQGKK-------- 516 (755)
Q Consensus 477 ~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~-------------------------------~~~~~~-------- 516 (755)
.|+|++++++++ .....|-++|+.++++...... ...+..
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 999999998775 4566788999988776543210 000000
Q ss_pred --------cCCCCCeEEEEEcCCCCCEEEEE----ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 517 --------KLPGKRITGFQFSPSDPSKVIVT----SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 517 --------~~~~~~I~~v~fsp~d~~~l~s~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
...+.. .-+..+| +++++++. ...+.|.|+|..+........ ......+..+.|++||+++..+.
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-PGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-HHHT--EEEEEE-TTSSEEEEEE
T ss_pred cCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEe-ccCCCcEeccEECCCCCEEEEEE
Confidence 001112 3456688 88888887 445899999999874433321 11223488999999999876655
Q ss_pred CC--CcEEEEEcCCCC
Q 004410 585 ED--SNIYIWNYSNQD 598 (755)
Q Consensus 585 ~D--g~I~iWd~~~~~ 598 (755)
.+ +.|.|||..+.+
T Consensus 335 ~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E--TTEEEEEETTTTE
T ss_pred ecCCCEEEEEECCCcE
Confidence 44 369999999886
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-10 Score=112.53 Aligned_cols=179 Identities=12% Similarity=0.188 Sum_probs=133.6
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEEE---eccCCcceEEEEEccCCCe
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVVD---YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~~---~~~~~~~V~~v~~spdg~~ 484 (755)
..|.|||-...+++..+....+|.++.+.+ +.+++. ..++|.||...+ -+.+. .........+++-+.+-..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 569999988899999999999999999976 344443 478999999884 33332 2222223333332223344
Q ss_pred EEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc-EEEEECCcceeeEEEeee
Q 004410 485 GIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL-VRVLCGENVVGKFKASAF 562 (755)
Q Consensus 485 la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~ 562 (755)
||. |-.-|.|+|-|+...+.-.. .....|...|.+++.+- +|.++|+++..|+ |||||..+.........-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p------~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAP------SIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCc------eEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 444 56679999999987654211 12456889999999999 9999999999986 799999887666655434
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....|.+++|||++.+|+++|+-|+|+|+.+....
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 456789999999999999999999999999998754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=130.30 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=142.4
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KV 453 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V 453 (755)
...+..|...+...+|+|++ .|+..+.+ ..|++||+.+++............++.|+| +++.|+ +.+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence 44566677889999999999 77777643 469999999887765544555666889999 887664 556665 59
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CCc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
++||+.+++...+..+.......+|+|||+.|+..+. +|. |+++|+.++..... .. ........+|+|
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l---t~------~g~~~~~~~~Sp 345 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL---TF------QGNYNARASVSP 345 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---ec------CCCCccCEEECC
Confidence 9999999988777666666678999999999888764 444 67777776654321 11 123344689999
Q ss_pred CCCCEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 531 SDPSKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSNQ 597 (755)
Q Consensus 531 ~d~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~~ 597 (755)
++++|+..+.++ .|.+||..+..... ..+........|+|||++|+..+.+ +.|+++++..+
T Consensus 346 -DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~----Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 346 -DGKKIAMVHGSGGQYRIAVMDLSTGSVRT----LTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -CCCEEEEEECCCCceeEEEEECCCCCeEE----CCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 788877765443 58899986644331 1222244567999999998877764 45888887543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-11 Score=116.29 Aligned_cols=112 Identities=19% Similarity=0.425 Sum_probs=90.8
Q ss_pred CCCEEEEEEcCCC-eEE--EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 388 SSEVLDLSWSKNG-FLL--SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~--s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~ 461 (755)
.++|.+++|+|++ .|+ .|..++.|.+||++ ++.+..+. ...+..|.|+| +|++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999999 543 45578899999996 66666664 56788999999 99999998754 66999999998
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeC------CCcEEEEECCCCe
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQ 503 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~------dg~I~iwD~~~~~ 503 (755)
+.+....+. .++.++|+|||++|++++. |+.++||+.....
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 888666554 4789999999999999875 6789999986543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-11 Score=119.49 Aligned_cols=203 Identities=10% Similarity=0.080 Sum_probs=157.5
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe----EEEEEecCCcEEEEEEeeCCCCEEEEEeCC--CcEEEEEcC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR----CLRVFSHNNYVTSVAFNPVDDNYFISGSID--GKVRIWEVR 459 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~----~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D--g~V~iwdl~ 459 (755)
.....|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..+.-++.+..++++|+.. ..+.|||+.
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 345566666654 4588899999999999987432 334444556677788788677788889999 889999999
Q ss_pred CCeEEEe--------cc--CCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 460 RCQVVDY--------TD--IREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 ~~~~~~~--------~~--~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
..+.+.. .+ ..-.++.+.|-+. ...||+++.-+.+++||++.++... .+ .......|+++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-~~------fd~~E~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-AQ------FDFLENPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce-eE------eccccCcceeee
Confidence 8855421 11 1235788999997 8899999999999999999665321 11 223467899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..| ++++|++|..-+.+..+|++.....-.. ..+..+.|.++..+|.+++|+++|-|..|+|+|+.+.+
T Consensus 255 l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 255 LTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ecC-CCcEEEEecccchhheecccCceeeccc-cCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 999 9999999999999999999875433321 25678999999999999999999999999999999855
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=127.14 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=132.4
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEE--
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIW-- 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iw-- 456 (755)
+..+...+...+|+|+| .|+..+.+ ..|.+||+.+++........+.+.+..|+| +++.|+ +.+.+|...||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEE
Confidence 34566778899999999 77766643 359999999988765544556677899999 887775 56778775555
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEE--CCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYD--IKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD--~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
|+..+....+..+........|+|||+.|+..+. +|...+|. +.++.... +.. ........+|+| ++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~------~g~~~~~~~~Sp-DG 339 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTF------TGSYNTSPRISP-DG 339 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---Eec------CCCCcCceEECC-CC
Confidence 5556665566555556678899999999887664 45655664 44443321 111 112334578999 88
Q ss_pred CEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEc
Q 004410 534 SKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNY 594 (755)
Q Consensus 534 ~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~ 594 (755)
++|+..+.++ .|.+||..+....... .......+.|+|||++|+.++.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 8888776654 5899998765433221 222346789999999998887654 2455555
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=118.71 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=170.3
Q ss_pred ccCcceeecCCCC--eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 236 DRHGSATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 236 ~~~~~~~~spdg~--~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+++..++|.-+++ .+.....+..+..+.+..... ...+..........++|..++.. || .|++|-.+|.+.+|.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcc-ccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 4455566655554 333332444455554432221 11111122344556778777775 33 6788889999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..+... ..++..+..+ ..+..
T Consensus 133 k~~d~h----------------------------------------------------------ss~l~~la~g-~g~~~ 153 (412)
T KOG3881|consen 133 KSGDLH----------------------------------------------------------SSKLIKLATG-PGLYD 153 (412)
T ss_pred cCCccc----------------------------------------------------------cccceeeecC-Cceee
Confidence 755321 0111112222 33444
Q ss_pred EEEcCCC--eEEEEeCC--CcEEEEeCCCCeEEEEEe----------cCCcEEEEEEeeCC--CCEEEEEeCCCcEEEEE
Q 004410 394 LSWSKNG--FLLSSSAD--KTVRLWQVGIDRCLRVFS----------HNNYVTSVAFNPVD--DNYFISGSIDGKVRIWE 457 (755)
Q Consensus 394 l~~s~~~--~L~s~s~D--g~V~iWdl~s~~~~~~~~----------h~~~V~~i~fsp~d--~~~l~sgs~Dg~V~iwd 457 (755)
|.-++.. .+++|+.. ..+.|||+.+.+.+..-. -.-+++++.|.+ . ...|++++.-+.||+||
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YD 232 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYD 232 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEec
Confidence 4445444 66779988 889999998884443321 345688999998 6 78899999999999999
Q ss_pred cCCCe--EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 458 VRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 458 l~~~~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.+.++ +..+.-...+++++...|+|+.|++|...|.+..||++.+++... ..+.-.+.|.++..+| ...+
T Consensus 233 t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~-------~~kg~tGsirsih~hp-~~~~ 304 (412)
T KOG3881|consen 233 TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC-------GLKGITGSIRSIHCHP-THPV 304 (412)
T ss_pred CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc-------ccCCccCCcceEEEcC-CCce
Confidence 98654 335666788999999999999999999999999999999987532 1334567899999999 8899
Q ss_pred EEEEECCCcEEEEECCcc
Q 004410 536 VIVTSADSLVRVLCGENV 553 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~ 553 (755)
+++++-|..|||+|..+.
T Consensus 305 las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEeeccceeEEEeecccc
Confidence 999999999999998873
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=132.52 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=199.8
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.++.+|++|+.|+.-|.|-.+|..+...... +. -...|.++.|-.+.+++|++- ...+.|||-. |..
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------i~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtE-- 202 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------IN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTE-- 202 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeee-------ee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcE--
Confidence 67889999999999999999999876543221 21 235688999998999998875 4678999842 221
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
++.+..| ..|..|.|-|..
T Consensus 203 ------------------------------------------------------------lHClk~~-~~v~rLeFLPyH 221 (545)
T KOG1272|consen 203 ------------------------------------------------------------LHCLKRH-IRVARLEFLPYH 221 (545)
T ss_pred ------------------------------------------------------------Eeehhhc-Cchhhhcccchh
Confidence 3333333 567889999988
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
+|++++..|.++--|+.+|+.+..+. ..+.+..+.-+| -+..+-+|...|+|.+|.....+.+ .+..|.++|.+|+
T Consensus 222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siA 300 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIA 300 (545)
T ss_pred heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEE
Confidence 88889999999999999999998885 678888999999 7788999999999999999887765 7888999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc---e
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV---V 554 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~---~ 554 (755)
+.++|.++++.+.|..|+|||+++...+.... .......+++|. +-+++.+....|.||...-. .
T Consensus 301 v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~---------tp~~a~~ls~Sq---kglLA~~~G~~v~iw~d~~~~s~~ 368 (545)
T KOG1272|consen 301 VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR---------TPHPASNLSLSQ---KGLLALSYGDHVQIWKDALKGSGH 368 (545)
T ss_pred ECCCCcEEeecccccceeEeeeccccccceee---------cCCCcccccccc---ccceeeecCCeeeeehhhhcCCCC
Confidence 99999999999999999999999876433211 123456677765 45666677778999963321 2
Q ss_pred eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 555 GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 555 ~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
...........+.|..+.|.|-...|-.|..-|.-.|
T Consensus 369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred CCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 2222222334568899999997777766655554333
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=114.67 Aligned_cols=151 Identities=21% Similarity=0.436 Sum_probs=108.0
Q ss_pred eeecCCCCeeEEeeC----------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE--cCCCcE
Q 004410 241 ATLKPGDHELTLGQR----------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG--GEDGTV 308 (755)
Q Consensus 241 ~~~spdg~~lasgs~----------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I 308 (755)
+.|+|+|.+|+.-.. -+...+|.++........+. ..+.++|.+++|+|+|+.||+. ..++.|
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----LKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----ccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 789999997775332 23455665543322222111 1245679999999999987654 456799
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+. ++. +..+ +.
T Consensus 86 ~lyd~~-~~~--------------------------------------------------------------i~~~--~~ 100 (194)
T PF08662_consen 86 TLYDVK-GKK--------------------------------------------------------------IFSF--GT 100 (194)
T ss_pred EEEcCc-ccE--------------------------------------------------------------eEee--cC
Confidence 999984 221 2222 24
Q ss_pred CCEEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC------CCcEEEEEc
Q 004410 389 SEVLDLSWSKNG-FLLSSSA---DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEV 458 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~---Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwdl 458 (755)
..+..+.|+|+| +|++++. .|.|.+||+++.+.+..+.|.. ++.++|+| +|++|+++.. |+.++||+.
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe
Confidence 567789999999 7777764 4679999999999998887765 78999999 9999999874 788999998
Q ss_pred CCCeE
Q 004410 459 RRCQV 463 (755)
Q Consensus 459 ~~~~~ 463 (755)
....+
T Consensus 179 ~G~~l 183 (194)
T PF08662_consen 179 QGRLL 183 (194)
T ss_pred cCeEe
Confidence 65443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=116.72 Aligned_cols=193 Identities=15% Similarity=0.257 Sum_probs=143.6
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC---
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--- 461 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~--- 461 (755)
...+..++|++.- .++++..|-.|++||-.. ++...++ ....|+|++|-|.....|+.|+. +-|.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3467789999866 889999999999999776 5555554 46789999999987888888876 45889976531
Q ss_pred ------------eEEEeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 462 ------------QVVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 462 ------------~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++.+..+ +..|+++.|.+||..+++++. +..|.|||..++..+.- .....+.++-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------~~~glgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------IPKGLGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------cccCCCceeeEEE
Confidence 1122222 368999999999999999876 56799999999876532 1234567889999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+| |+.+++++.-|+..++|.....-...+. .-..+.|...+|+|+|++|+-+.. |.-++|.+.
T Consensus 247 SP-dgd~lfaAt~davfrlw~e~q~wt~erw--~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 247 SP-DGDVLFAATCDAVFRLWQENQSWTKERW--ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred cC-CCCEEEEecccceeeeehhcccceecce--eccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 99 9999999999999999965543333332 234568999999999998765543 334445443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=116.00 Aligned_cols=266 Identities=18% Similarity=0.329 Sum_probs=170.4
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+-|.++.|..+|.+||||..+|.|.++.-..... .++..... | .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~------f-------------------------qsh- 71 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQTE------F-------------------------QSH- 71 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeeeee------e-------------------------ecc-
Confidence 45689999999999999999999999996432211 01000000 0 000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCe--------------------
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDR-------------------- 420 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~-------------------- 420 (755)
...|+. +..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 72 -------epEFDY----LkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 72 -------EPEFDY----LKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred -------Ccccch----hhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 000000 0000 123467889999876 78888999999999875321
Q ss_pred ---------------EEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEEecc-----CCcceE
Q 004410 421 ---------------CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTD-----IREIVS 474 (755)
Q Consensus 421 ---------------~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~~~~-----~~~~V~ 474 (755)
|.+++. |..-|.+|.++. |...++++ .|-.|.+|++.-. .++.... ...-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 122221 778899999998 87777776 4788999998632 3444333 345699
Q ss_pred EEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEec----cc----ccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 475 AVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ----GK----KKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 475 ~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~----~~----~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..|+|. .+.++-.+..|+|++-|++...+-......+. +. ...--..|..+.|++ +|+++++-.. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-cee
Confidence 9999994 56788889999999999995543211110000 00 001124688999999 8888876543 689
Q ss_pred EEEECCcceeeEEE-eeecc----------CCce---EEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKA-SAFRV----------AGSQ---MFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~-~~~~~----------~~~v---~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||+.-....... ..... ...| ..++|+-++.+++||+..+.++++++..|.
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 99998532222211 11110 1122 457899999999999999999999987775
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-10 Score=119.58 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=163.5
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEEccCCe
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWKVIEHE 317 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWdv~~~~ 317 (755)
..+.++|||+++++.+.||.|.++|+.+.. ...++.... ....+++|+||++|+++. .++.|.|+|..+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 347899999999999999999999987654 223343333 357799999999998776 58899999999999
Q ss_pred eeeeeecCCCCC-------ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 318 RLDGFDVQDTDP-------SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 318 ~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
.++.+....... ..+...+. ...+.+.. .....+.+.+.... ..+..........
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~--~~~fVv~l-------------kd~~~I~vVdy~d~---~~~~~~~i~~g~~ 173 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPG--RPEFVVNL-------------KDTGEIWVVDYSDP---KNLKVTTIKVGRF 173 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SS--SSEEEEEE-------------TTTTEEEEEETTTS---SCEEEEEEE--TT
T ss_pred ceeecccccccccccCCCceeEEecCC--CCEEEEEE-------------ccCCeEEEEEeccc---cccceeeeccccc
Confidence 888876543211 11211111 11111111 11122222221110 1111122233456
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeC---------CCCEEEEEeCCCcEE
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPV---------DDNYFISGSIDGKVR 454 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~---------d~~~l~sgs~Dg~V~ 454 (755)
..+..|.|++ ++ ++...+..|-++|..+++.+..+. |...+..+ .+|. .+...++.-....+.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc
Confidence 7789999999 54 445677899999999998887663 44444433 2231 222222323334566
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE----eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG----TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g----s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+||....+++......+.-.-+..+|+++++++. ...+.|.++|..+.+....+. ......+..+.|++
T Consensus 253 v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-------~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-------PGPGKRVVHMEFNP 325 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-------HHHT--EEEEEE-T
T ss_pred cchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe-------ccCCCcEeccEECC
Confidence 7888888888655544544888999999999998 445789999999986654321 11234589999999
Q ss_pred CCCCEEEEEECCC--cEEEEECCcceeeEEE
Q 004410 531 SDPSKVIVTSADS--LVRVLCGENVVGKFKA 559 (755)
Q Consensus 531 ~d~~~l~s~s~Dg--~I~iwd~~~~~~~~~~ 559 (755)
++..+.++..++ .|.|||..+.......
T Consensus 326 -dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 326 -DGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -TSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred -CCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 778776665443 6999999987666554
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-10 Score=123.45 Aligned_cols=197 Identities=17% Similarity=0.228 Sum_probs=138.1
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V~iw 456 (755)
+..+...+...+|+|+| .|+.+..+ ..|++||+.+++......+...+.++.|+| +++.|+ +.+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 34455678888999999 77766543 479999999987766556667778899999 887665 444444 59999
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
|+.+++...+..+........|+|||+.|+..+.. + .|+++|+.+++.... ......+..+.|+| ++
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l---------~~~~~~~~~~~~sp-dg 333 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL---------TFRGGYNASPSWSP-DG 333 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---------ecCCCCccCeEECC-CC
Confidence 99988777666665556678999999998876653 3 588888877654321 11234567789999 78
Q ss_pred CEEEEEECCC---cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEcC
Q 004410 534 SKVIVTSADS---LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~ 595 (755)
.+|+.+..++ .|.+||..+....... .........|+|||++|+.++.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l~----~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVLT----DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEcc----CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 8888887765 7888887763322211 122345568999999998887764 35555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-08 Score=109.02 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=173.0
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC----CCcEEEEEccCC-eeeeeeecCCCCCce
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----DGTVRVWKVIEH-ERLDGFDVQDTDPSC 331 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~----Dg~I~vWdv~~~-~~~~~~~~~~~~~~~ 331 (755)
+.|.+|++......+... +.+ .-......|+++|++++|.++.+ ++.|..|++... ..+..
T Consensus 13 ~gI~~~~~d~~~g~l~~~---~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---------- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLV---QTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---------- 78 (345)
T ss_dssp TEEEEEEEETTTTEEEEE---EEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------
T ss_pred CcEEEEEEcCCCCCceEe---eee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------
Confidence 789999885444434322 221 12344567889999999998876 467888877653 11111
Q ss_pred eEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CCC
Q 004410 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK 409 (755)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~Dg 409 (755)
+.+..........+++++++ +|+++. .+|
T Consensus 79 -------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g 109 (345)
T PF10282_consen 79 -------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGG 109 (345)
T ss_dssp -------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTT
T ss_pred -------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCC
Confidence 11111123345678999999 666665 589
Q ss_pred cEEEEeCCC-CeEEEE---Ee-----------cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCe--EEE----ec
Q 004410 410 TVRLWQVGI-DRCLRV---FS-----------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQ--VVD----YT 467 (755)
Q Consensus 410 ~V~iWdl~s-~~~~~~---~~-----------h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~--~~~----~~ 467 (755)
.|.++++.. +..... +. ......++.|+| +++++++... ...|++|++.... +.. ..
T Consensus 110 ~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 110 SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 999999987 443332 21 235578999999 8888777653 4579999997654 321 23
Q ss_pred cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADS 543 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg 543 (755)
........++|+|+++++.+.. .++.|.+|++. ++.+.....+...............++++| ++++|+++. ..+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 4456689999999999887755 46779999988 554433322222211111223688999999 777777665 567
Q ss_pred cEEEEECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 544 LVRVLCGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 544 ~I~iwd~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.|.+|++.. ..................++++|+|++|+++. .++.|.+|+++
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 899999843 22233222222234578999999999999887 55689999885
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-10 Score=118.54 Aligned_cols=265 Identities=16% Similarity=0.207 Sum_probs=175.0
Q ss_pred cCcceeecCCCCe-eEEeeCCCeEEEEECCCCcccccccccceeeeccc--ccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 237 RHGSATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE--GSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 237 ~~~~~~~spdg~~-lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~--~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
..+.+.++|||++ +|+|.---.|+|||+...... +.-|. ..|.-.-++.|-..++--..|.+|-+..-
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceee---------eeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 3445899999996 456777889999997643321 22332 34444555666666666777888776532
Q ss_pred cCCeeeeeeecCC-------CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 314 IEHERLDGFDVQD-------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 314 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.| ....+..+. ..+.|-.+.......++-+.... +.-+..+..
T Consensus 124 -~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEq----------------------------GrfL~P~~~ 173 (703)
T KOG2321|consen 124 -YG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ----------------------------GRFLNPFET 173 (703)
T ss_pred -cC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccc----------------------------ccccccccc
Confidence 11 111111111 11112111111111111111111 122344555
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-------cCC-----cEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------HNN-----YVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~-----~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
..+.++++..++-. +|++|+.+|.|..||.++...+..+. |.+ .|+++.|.. ++-.+++|+.+|.|
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSV 252 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcE
Confidence 56889999999876 88888999999999999887776663 222 399999997 79999999999999
Q ss_pred EEEEcCCCeEEEeccCCc--ceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIRE--IVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~--~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.|||++..+.+...+|.. +|..+.|.+.+. --++......++|||-.+++...... ....++.+++-|
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---------pt~~lND~C~~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---------PTSDLNDFCFVP 323 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------ccCCcCceeeec
Confidence 999999998887666654 688899987533 33333455679999999988754221 235689999999
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 004410 531 SDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
+..+++++-.++.+..|=+.
T Consensus 324 -~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 -GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred -CCceEEEecCCCcceeEEcc
Confidence 88899999988887776544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=122.63 Aligned_cols=272 Identities=14% Similarity=0.193 Sum_probs=188.4
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcc--------cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--------~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
..+++|+....++|+|+.||.++|-.+.+... ..+.+.+.|++.||.+.|.-+.|+.+.+.|-|...+|.|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence 34689999999999999999999998765432 2345667799999999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||-+-.+....++.. ....+
T Consensus 97 VWmlykgsW~EEMiN------------------------------------------------------------nRnKS 116 (1189)
T KOG2041|consen 97 VWMLYKGSWCEEMIN------------------------------------------------------------NRNKS 116 (1189)
T ss_pred EEeeecccHHHHHhh------------------------------------------------------------CcCcc
Confidence 999877654332211 12345
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe------
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------ 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~------ 462 (755)
.|.+++|+.+| .+.....||.|.+=.++..+.-..--.......+.|++ |...++.+-.+|.+.+||....-
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence 68889999999 88888888888877766543321111222345788999 88888888889999999986421
Q ss_pred -E-EE----eccCCcceEEEEEc--------cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 463 -V-VD----YTDIREIVSAVCYC--------PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 463 -~-~~----~~~~~~~V~~v~~s--------pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
+ +. +......|-.++|. ||...|+++..+|.+.|..-.+...... ...+-.|.+..|
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakW 266 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGAKW 266 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeeccee
Confidence 1 21 12223335556654 5788999999999998875543322111 112357889999
Q ss_pred cCCCCCEEEEEECCC---------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 529 SPSDPSKVIVTSADS---------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
++ ++..|++++.+. .|.+|..- +...+........|++++|-..|-.++.+
T Consensus 267 nh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~---G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 267 NH-NGAVLAVCGNDSDADEPTDSNKVHFYSPY---GHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cC-CCcEEEEccCcccccCccccceEEEeccc---hhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 99 999999998753 34454321 12222223345678888886666555443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=121.74 Aligned_cols=218 Identities=18% Similarity=0.170 Sum_probs=134.6
Q ss_pred eecccccEEEEEEecCCCEEEEEcCC-C--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGED-G--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~D-g--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------------------------------ 256 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------------------------------ 256 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------------------------------
Confidence 44566788999999999999876543 2 57788876654210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCc--EEEEeCCCCeEEEEEecCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~ 432 (755)
+..+.+ .....+|+|+| .|+ +.+.++. |++||+.+++......+.....
T Consensus 257 ------------------------lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 257 ------------------------VTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred ------------------------ecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 011111 22357899999 555 4566665 7888998887665555666678
Q ss_pred EEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~ 506 (755)
...|+| +++.|+..+. ++ .|.++|+.+++...+..........+|+|||++|+..+.+ + .|.++|+.++....
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 899999 8887766553 34 4777788877765543333334567999999999886653 3 46667888776532
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCc--EEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
. ... .......|+| +++.|+..+ .++. +.+++.... ..... ..+.+.+...+|+|
T Consensus 389 l-----t~~-----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l--~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 L-----TST-----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSIDGR-FKARL--PAGQGEVKSPAWSP 446 (448)
T ss_pred c-----cCC-----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC-ceEEC--cCCCCCcCCCccCC
Confidence 1 110 1112347999 666666554 4443 555555322 22221 22344566677776
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-09 Score=120.16 Aligned_cols=232 Identities=14% Similarity=0.121 Sum_probs=143.9
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccCCeeeeeeecCCCCCceeEE
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~ 334 (755)
+|.++|..... .+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~--------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-------------- 237 (430)
T PRK00178 180 TLQRSDYDGAR--------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-------------- 237 (430)
T ss_pred EEEEECCCCCC--------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------
Confidence 46666655322 13345577789999999999999876643 358888887664211
Q ss_pred eeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCC--c
Q 004410 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADK--T 410 (755)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg--~ 410 (755)
+....+.+....|+|+| .|+ +.+.++ .
T Consensus 238 -------------------------------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 238 -------------------------------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred -------------------------------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 01111223457899999 555 444455 5
Q ss_pred EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE
Q 004410 411 VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
|++||+.+++......+........|+| +++.|+..+. +| .|+++|+.+++...+...........|+|||+.|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8888999887765555666677789999 8887766553 33 577888888776544333333456789999999988
Q ss_pred EeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-C--cEEEEECCcceeeEEEee
Q 004410 488 GTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-S--LVRVLCGENVVGKFKASA 561 (755)
Q Consensus 488 gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~ 561 (755)
...+ + .|.+||+.++..... .. ........|+| ++++++..+.+ + .|.+++...... ...
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~l-----t~-----~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l-- 413 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRIL-----TD-----TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR-LPL-- 413 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEc-----cC-----CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCce-EEC--
Confidence 7654 3 488899988765321 11 01122458999 77777666543 3 355555532211 111
Q ss_pred eccCCceEEEEEec
Q 004410 562 FRVAGSQMFATFTS 575 (755)
Q Consensus 562 ~~~~~~v~~l~fsp 575 (755)
....+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 22334455566665
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-11 Score=125.08 Aligned_cols=291 Identities=14% Similarity=0.208 Sum_probs=198.8
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
++..+.+|.+.+..++--.+.+-++++++|.+|++|.++....+..+-.+.-++++|+.+|..+.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456788888888866555666778999999999999988777777666777899999999999999999998875 78
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||.--+..+..+... | -.+
T Consensus 805 giHlWDPFigr~Laq~~da------------------------------------------------------p---k~~ 827 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA------------------------------------------------------P---KEG 827 (1034)
T ss_pred cceeecccccchhHhhhcC------------------------------------------------------c---ccC
Confidence 9999997655443221100 0 011
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
..+.|.++.--... .++-++...+|+++|.+.......++ .+..+.++++.| .|+.++.+-..|.|.+.|.+
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecC
Confidence 22233333211112 34445788999999999888776664 457799999999 99999999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEE-EECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i-wD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
++.++ .|.........++- |..+.|+....|.++.+ |...++....+.+. +..+ ..|...-+.-++
T Consensus 907 ~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kp--------ppep---ahflqsvgpSLV 974 (1034)
T KOG4190|consen 907 NGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKP--------PPEP---AHFLQSVGPSLV 974 (1034)
T ss_pred CCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCC--------CCcc---hhhhhccCceeE
Confidence 99988 46655554444443 55567777777888888 87766654432111 0001 112222344567
Q ss_pred EEECCCcEEEEECCc------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 538 VTSADSLVRVLCGEN------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
+......+.||.-.. ...+.+. ....+..++++.-|=..-++.|.+.|.|.+
T Consensus 975 ~a~~Gn~lgVYad~a~~ha~stitKiR~--d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 975 TAQNGNILGVYADSAELHAESTITKIRP--DEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EeccCcEEEEEecchhhhhhhhhccccc--cccCCccceeeeccccchhhccCCCCceee
Confidence 777777778875221 1112222 345567788888887777888888888875
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-10 Score=112.99 Aligned_cols=333 Identities=16% Similarity=0.203 Sum_probs=189.1
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..++++.+.+.....-|...-+.+.+.|.++|||--....+..... ...-..+++++.+.++...|+.|-..|++
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3467888889988888999999999999999999754333222221 22345689999999999999999999999
Q ss_pred EEEEccCCe----eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 309 RVWKVIEHE----RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 309 ~vWdv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
.-+.+...- .++....+...+..+.|..... ..+..+.+.. +.|.-. +.-..+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e----------------~V~s~~~dk~-~~~hc~------e~~~~l 149 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE----------------WVLSTGKDKQ-FAWHCT------ESGNRL 149 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce----------------eEEEeccccc-eEEEee------ccCCcc
Confidence 888764321 1111111111111111111100 0000000000 000000 000000
Q ss_pred cCCCCCEEEEEEc-CCC----eEEEEeCCCcEEEEeCC--CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 385 QGHSSEVLDLSWS-KNG----FLLSSSADKTVRLWQVG--IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 385 ~gh~~~V~~l~~s-~~~----~L~s~s~Dg~V~iWdl~--s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+ .+. .++. +.. +...|...|.|.+-.+. .-..+..+ .|.+.++++.|.| ...+|++|..|..|.+|
T Consensus 150 g~---Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 150 GG---YNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMW 224 (404)
T ss_pred cc---eEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEE
Confidence 00 000 0000 000 12223333444443332 22333334 4999999999999 88999999999999999
Q ss_pred EcCCCe--EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeE------------------------
Q 004410 457 EVRRCQ--VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI------------------------ 510 (755)
Q Consensus 457 dl~~~~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~------------------------ 510 (755)
|+...+ .....+|...|..+++-+--+.+++++.||.|-+||++........-.
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 997554 446888999999999999999999999999999999985543211000
Q ss_pred -Eecccc-cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC-----cceeeEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 511 -CLQGKK-KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE-----NVVGKFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 511 -~~~~~~-~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~-----~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.+..+. ..-+..+...+-+ +.....+-+..-.+|+-|.- +..+............|+.+.+..+-..|+|+
T Consensus 305 ~glr~h~crkcg~avc~~c~s--~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTs 382 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGKCSS--NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTS 382 (404)
T ss_pred hhhhhhhhhhhhhhcCccccc--CccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeec
Confidence 000000 0001111111111 22233333444455555421 11121112112334578888888888899999
Q ss_pred eCCCcEEEEEcCC
Q 004410 584 SEDSNIYIWNYSN 596 (755)
Q Consensus 584 s~Dg~I~iWd~~~ 596 (755)
|.|..|+|||+..
T Consensus 383 G~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 383 GTDRVIKIWDVRS 395 (404)
T ss_pred CCceEEEEEechh
Confidence 9999999999864
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-09 Score=110.19 Aligned_cols=318 Identities=19% Similarity=0.222 Sum_probs=192.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-----------CCcEE
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----------DGTVR 309 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-----------Dg~I~ 309 (755)
+.|||-|.+|++-..-| |.+|--..- ...+.+ .|.+ |.-+.|||+.+||+|-+. ...++
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f-------~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESF-------DRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccH-------HHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 88999999999988876 889964321 122222 3554 888999999999999652 25799
Q ss_pred EEEccCCeeeeeeecCCCCCc-eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPS-CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
|||+.+|...+.+........ --.|...+.....+ +... ..+.++....+.+..+... ..
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A--------------rm~~-~sisIyEtpsf~lld~Ksl----ki 346 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA--------------RMTG-NSISIYETPSFMLLDKKSL----KI 346 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeE--------------Eecc-ceEEEEecCceeeeccccc----CC
Confidence 999999998888876422111 01112222111111 0011 2233333222332221111 23
Q ss_pred CCEEEEEEcCCC-eEEEEe-----CCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEE----------eCCC
Q 004410 389 SEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISG----------SIDG 451 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s-----~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sg----------s~Dg 451 (755)
..|....|+|.+ .||.=. .-..+-|-.+.+++.+++-. ++-.=..+-|-. +|++|+.- +.-.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEe
Confidence 457888999988 444322 12346677777777666543 222222344444 56666542 1122
Q ss_pred cEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 452 KVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 452 ~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.+-|+.++...+. ......+.|.+.+|-|.|..+++-+. ..++.+|-+.+......+ .+.......+.+.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vf 499 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVF 499 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEE
Confidence 4667777765543 56677889999999999998877543 356889988742211110 1122335678899
Q ss_pred EcCCCCCEEEEE---ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 528 FSPSDPSKVIVT---SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYSNQ 597 (755)
Q Consensus 528 fsp~d~~~l~s~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~~~ 597 (755)
|+| .|++++++ +..|.+.++|......+... .......+.+.|.|.|+|+++++. |..-+||++...
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~--~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTA--SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhcc--CccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 999 88887765 45789999998742222222 222235577899999999999875 556778887654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-09 Score=118.09 Aligned_cols=201 Identities=11% Similarity=0.140 Sum_probs=137.2
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCC--cE
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDG--KV 453 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg--~V 453 (755)
...+..+...+....|+|+| .|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceE
Confidence 34455677788999999999 77766543 369999999887765544455566799999 888776 455555 58
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
++||+.+++...+..+........|+|||+.|+..+. +| .|+++|+.+++.... ... ........|+|
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l---t~~------~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV---TFV------GNYNARPRLSA 340 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---ecC------CCCccceEECC
Confidence 8889999887776666666778899999998877664 33 577788877764321 111 12234578999
Q ss_pred CCCCEEEEEECC-C--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCC
Q 004410 531 SDPSKVIVTSAD-S--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSN 596 (755)
Q Consensus 531 ~d~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~ 596 (755)
++++|+....+ + .|.++|..+....... .........|+|||++|+..+.+ ..|+++++..
T Consensus 341 -dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 341 -DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CCCEEEEEEccCCceEEEEEECCCCCEEEcc----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 77777766543 3 4778887764333221 11223356899999999877654 3467777653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=119.32 Aligned_cols=149 Identities=23% Similarity=0.398 Sum_probs=123.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+-++++.-++++|+.-+.|.+|......+.. .+.||++.|..+.|+-||++++++++|.++|+|++++.+..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~- 210 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL- 210 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcc-------eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-
Confidence 4456777799999999999999976322211 47899999999999999999999999999999999887632
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
..+..+|...|..++|.++
T Consensus 211 ------------------------------------------------------------~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 211 ------------------------------------------------------------GCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ------------------------------------------------------------CcccccccceeEEEEeccc-
Confidence 1234689999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.+++++.|.+.++|+....+.. ++ .| ...|..++..+ +.-..++++.|+.+++||+..
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 9999999999999976544444 44 34 56799999988 888999999999999999853
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=103.58 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=143.5
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE--EE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE-
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV- 464 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~--~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~- 464 (755)
-.++.|++.+ .++++-.+|.+.+-+.......+ .+ .|.-.+....|+-.+.+++++|+.|+.+..||++- +..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 4567888888 88888888998866655544444 33 38889999999987889999999999999999993 3333
Q ss_pred -EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 465 -DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 465 -~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....|...|.+|.-+| .+.+|++|+.|-.|++||+++ ++.+.. ..-++.|..+.++|.....++.++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---------CccccceEEEEecchhhhHHHHHHH
Confidence 2456788899998887 688999999999999999994 444422 2234789999999977667777777
Q ss_pred CCcEEEEECCcceeeEEE---eeeccCCceEEEEEecCCCEEEEEe-CCCcEE-EEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKA---SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIY-IWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~---~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~-iWd~~~~~ 598 (755)
-+-.+|.+..+....+.. ....|.+-.....|.....+|+|++ .|..|+ +|-.-++.
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 777788877765544222 2234555555555644445677765 566655 77665554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-08 Score=118.42 Aligned_cols=330 Identities=13% Similarity=0.213 Sum_probs=204.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEE----ECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVH----PVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw----~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
+.+-++.+-++...++.+..+|.|.+. +......+. .-.-+..|.+++||||+.+||.++.+++|.+.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI--------VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE--------EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 455568888999999999999999998 333222111 12245689999999999999999999999887
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEE--EeCCcceeccCccceEecCCCC
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCV--VLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
. .+.+.+.+........ +....+.+.|.+... .+.|+...... .-++... ......+. +..
T Consensus 148 t-~~fd~i~E~~l~~~~~--------~~~~~VsVGWGkKeT----QF~Gs~gK~aa~~~~~p~~~---~~d~~~~s-~dd 210 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDF--------GESKHVSVGWGKKET----QFHGSAGKAAARQLRDPTVP---KVDEGKLS-WDD 210 (928)
T ss_pred e-ccceEEEEeecCcccc--------CCCceeeeccCcccC----ccCcchhhhhhhhccCCCCC---ccccCccc-cCC
Confidence 5 4555555544332211 112223333332211 11111111000 0001100 00112223 445
Q ss_pred CEEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEc
Q 004410 390 EVLDLSWSKNG-FLLSSSA------DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~------Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl 458 (755)
.-..++|-.|| ++++.+. -+.||||+-+ |....+-. -.+--.+++|-| .|+++++.-. ...|.+|.-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEec
Confidence 66779999999 7777664 2679999865 55444432 344456789999 9999988764 345677765
Q ss_pred CCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 459 RRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 459 ~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..-+.- .+......|..+.|++|+..||+...|. |.+|-..+.+-..+..+.+. ....+..+.|+|.++.
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-----~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-----SSESVNFVKWDPEKPL 362 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-----CCCCCCceEECCCCCC
Confidence 443322 2224456799999999999999977555 99999988775544333222 1233455999998888
Q ss_pred EEEEEECCCcEEEEE-----------------------CCcceee-E---------EEeeeccCCceEEEEEecCCCEEE
Q 004410 535 KVIVTSADSLVRVLC-----------------------GENVVGK-F---------KASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd-----------------------~~~~~~~-~---------~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
.|.+.+.++.+..++ +.+.... + .........+|..++|++++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 888887766665543 2111100 0 001123457899999999998899
Q ss_pred EEeCCCcEEEEEcCCCC
Q 004410 582 SPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 582 sgs~Dg~I~iWd~~~~~ 598 (755)
+-..||.|.+|......
T Consensus 443 vl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEECCCCEEEEEecCCC
Confidence 99999999999965543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-07 Score=94.45 Aligned_cols=276 Identities=14% Similarity=0.221 Sum_probs=183.8
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---CcEEEEEccC--CeeeeeeecCCCCCc
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---GTVRVWKVIE--HERLDGFDVQDTDPS 330 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g~I~vWdv~~--~~~~~~~~~~~~~~~ 330 (755)
+.-|.+|++.+....+... .+.++.+.++-|+|+|++++|.++-.+ |.|..|.+.. |... .+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLN------- 82 (346)
T ss_pred CCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eee-------
Confidence 5679999988666555533 245677889999999999999998655 5666666543 2210 000
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CC
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-AD 408 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~D 408 (755)
...+.+ ..-+.++.++++ +|+++. .-
T Consensus 83 --------------------------------------------------~~~~~g--~~p~yvsvd~~g~~vf~AnY~~ 110 (346)
T COG2706 83 --------------------------------------------------RQTLPG--SPPCYVSVDEDGRFVFVANYHS 110 (346)
T ss_pred --------------------------------------------------ccccCC--CCCeEEEECCCCCEEEEEEccC
Confidence 001112 222678899999 666665 45
Q ss_pred CcEEEEeCCC-CeE---EEEEecCCc----------EEEEEEeeCCCCEEEEEeCC-CcEEEEEcCCCeEEE----eccC
Q 004410 409 KTVRLWQVGI-DRC---LRVFSHNNY----------VTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVD----YTDI 469 (755)
Q Consensus 409 g~V~iWdl~s-~~~---~~~~~h~~~----------V~~i~fsp~d~~~l~sgs~D-g~V~iwdl~~~~~~~----~~~~ 469 (755)
|.|.++-++. |.. +..+.|.+. +....+.| ++++|++.... -+|.+|++..+++.. ....
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 8899998865 333 334456665 88999999 99999887653 469999999876652 2244
Q ss_pred CcceEEEEEccCCCeEEEEeC-CCcEEEEECCCC--eEeeeeeE-EecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCc
Q 004410 470 REIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDN--QLYQQNQI-CLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSL 544 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~--~~~~~~~~-~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~ 544 (755)
......|.|+|++++..+.+. +++|-+|..... ++. ..+. ......-.......++.++| ++++|.++.. ...
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~-~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~ds 267 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE-ELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDS 267 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE-EeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCe
Confidence 556889999999999877654 889999988873 322 2221 11111122345677899999 8888887754 447
Q ss_pred EEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCC-cEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDS-NIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg-~I~iWd~~~~~ 598 (755)
|.++.+.....++.. ....+........|+++|++|+++..|+ +|.+|..+...
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 777776654333332 2222333457889999999999998764 58999876543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-07 Score=98.06 Aligned_cols=270 Identities=11% Similarity=0.049 Sum_probs=163.5
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC----------CCcEEEEEccCCeeeeeeecCC
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------DGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~----------Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
++|.|.|..+... +. ++..-..+- .+ +||||+.|+.+.. +..|.|||+.+.+.+.++..+.
T Consensus 27 ~~v~ViD~~~~~v-~g------~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRV-LG------MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEE-EE------EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 7899999765331 22 222111222 24 9999998887765 7899999999998887766432
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSS 405 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~ 405 (755)
.+- . . .......++++|+| +|+..
T Consensus 98 ~p~----------------------------------------------------~--~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPR----------------------------------------------------F--L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cch----------------------------------------------------h--h-ccCccceEEECCCCCEEEEe
Confidence 210 0 0 11223457899999 66655
Q ss_pred e-C-CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE----EeccC-Ccce-EEE
Q 004410 406 S-A-DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV----DYTDI-REIV-SAV 476 (755)
Q Consensus 406 s-~-Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~----~~~~~-~~~V-~~v 476 (755)
. . +..|-+.|+.+++.+..+.-.+...-+..++ .-+..-+.||......+.+ ++.. ..... ...+ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999886444222222222 2222333456555544432 1111 01111 0000 001
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCCCCCEEEEEE----------C
Q 004410 477 CYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPSDPSKVIVTS----------A 541 (755)
Q Consensus 477 ~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~d~~~l~s~s----------~ 541 (755)
.|.+ +|+++.+... |+|.+.|+.+........+.+.... ......+..++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4455 8888888666 9999999766543332222221111 12334455599999 666666632 2
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
.+.|.++|..+........ ....+..++++|||+ +|++.. .++.|.+.|..+++
T Consensus 278 ~~~V~ViD~~t~kvi~~i~---vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIE---LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCEEEEEECCCCeEEEEEe---CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2579999988766555542 345788999999999 888776 57889999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=122.34 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=152.6
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
+.|....+.-+...++.++.+..+.+||...+....++..... ..+.....-...........++.-+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er------------~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER------------CTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce------------EEEEeEEEEeccCcEEEEEeccccc
Confidence 4455556666778899999999999999988766554432221 1112222222333445566677778
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDD 441 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~ 441 (755)
.+++|.+. ...+|. .+.||.+.|..+.|+.+| ++++.|+|+++|+|++++.+... .|+|+..|..+.|.| +
T Consensus 156 ~iivW~~~---~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n- 229 (967)
T KOG0974|consen 156 EIIVWKPH---EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N- 229 (967)
T ss_pred cEEEEecc---ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c-
Confidence 88888776 223333 688999999999999999 99999999999999999887765 567999999999998 4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEeccCC-cceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 442 NYFISGSIDGKVRIWEVRRCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~-~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.+++++.|-+.++|+....+...+..|. ..|..+++.++...+++++.||.+++||+..
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999987776665555544 4699999999999999999999999999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-08 Score=113.10 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=127.7
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EEEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSA-DK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VRIWE 457 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~-Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~iwd 457 (755)
..+...+....|+||| .|+..+. ++ .|++||+.+++...............|+| +++.|+ +.+.+|. |+++|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEE
Confidence 3456678889999999 6666543 33 58899998887654433344456789999 888665 4566665 88889
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+.+++...+..+.......+|+|||+.|+..+. +| .|+++|+.+++.... .. .........|+| +++
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L---t~------~g~~~~~~~~Sp-DG~ 362 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL---TF------EGEQNLGGSITP-DGR 362 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE---ec------CCCCCcCeeECC-CCC
Confidence 998887777666666788999999998877654 33 477778877764321 11 112234568999 677
Q ss_pred EEEEEEC-CCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-Cc--EEEEEcC
Q 004410 535 KVIVTSA-DSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SN--IYIWNYS 595 (755)
Q Consensus 535 ~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~--I~iWd~~ 595 (755)
+|+..+. ++. |.++|..+....... . ........|+|||++|+..+.+ +. |++++.+
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGAMQVLT--S--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCCeEEcc--C--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7766554 444 445666554322211 1 1122345899999998776644 33 7777764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=117.90 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=178.0
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.....|+.|+....|+|.||.||.++|-.+.+...-..... ++. .+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa--------------------------~s- 59 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAA--------------------------AS- 59 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccc--------------------------cc-
Confidence 45678999999999999999999999998876532111000 000 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV 439 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~ 439 (755)
.-..-+++.||...|.-+.|+.+. .|-++..+|.|.+|-+-.+...... .....|.++.|+.
T Consensus 60 -------------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~- 125 (1189)
T KOG2041|consen 60 -------------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL- 125 (1189)
T ss_pred -------------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-
Confidence 001135688999999999999888 8888999999999988766543322 2567799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee---eeeEEecccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ---QNQICLQGKK 516 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~---~~~~~~~~~~ 516 (755)
+|..+.....||.|.+=.++..++....-.......+.|++|.+.++.+-.+|.+++||...+-... ...+...+..
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~ 205 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF 205 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee
Confidence 9999999999999988888776655322222334578999999999999999999999987643221 1112222223
Q ss_pred cCCCCCeEEEEEc-------CCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 517 KLPGKRITGFQFS-------PSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 517 ~~~~~~I~~v~fs-------p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.....+|..+.|. |.+...++++-..|.+.|..-.+-...... ...-.+..+.|+++|..|+.++.|
T Consensus 206 s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~---dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 206 SNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV---DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE---ecccEeecceecCCCcEEEEccCc
Confidence 3334456666664 236778999999999998765443222222 223567889999999999999865
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-07 Score=98.80 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=158.0
Q ss_pred CcceeecCCCCeeEEeeC----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEEE
Q 004410 238 HGSATLKPGDHELTLGQR----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVWK 312 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vWd 312 (755)
...++++|++++|.+... .+.|..|.+......+..+ ............++++|++++|+++. .+|.|.+++
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344899999999998866 5789999877543223222 22222334456799999999999987 488999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.....+...... + ...+. ...+ .........
T Consensus 116 l~~~g~l~~~~~~--------~----------------------~~~g~---------------g~~~---~rq~~~h~H 147 (345)
T PF10282_consen 116 LDDDGSLGEVVQT--------V----------------------RHEGS---------------GPNP---DRQEGPHPH 147 (345)
T ss_dssp ECTTSEEEEEEEE--------E----------------------ESEEE---------------ESST---TTTSSTCEE
T ss_pred ccCCcccceeeee--------c----------------------ccCCC---------------CCcc---cccccccce
Confidence 9774322111000 0 00000 0000 011234578
Q ss_pred EEEEcCCC-eEEEEe-CCCcEEEEeCCCCe--EEE----EEecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcC--CC
Q 004410 393 DLSWSKNG-FLLSSS-ADKTVRLWQVGIDR--CLR----VFSHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVR--RC 461 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~--~~~----~~~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~--~~ 461 (755)
++.++|++ ++++.. ....|.+|++.... ... .+........+.|+| +++++++ .-.++.|.++++. ++
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC
Confidence 89999998 555543 34579999987655 322 223667789999999 7777655 5567889999998 44
Q ss_pred eEEE---ecc------CCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 462 QVVD---YTD------IREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 462 ~~~~---~~~------~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
.... ... .......|+++|||++|+++.. .+.|.+|++. ++.+.....+. ..+.....++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~------~~G~~Pr~~~~s 300 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP------TGGKFPRHFAFS 300 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE------ESSSSEEEEEE-
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe------CCCCCccEEEEe
Confidence 3321 111 1125789999999999988664 5679999993 44544322221 224457899999
Q ss_pred CCCCCEEEEEE-CCCcEEEEECC
Q 004410 530 PSDPSKVIVTS-ADSLVRVLCGE 551 (755)
Q Consensus 530 p~d~~~l~s~s-~Dg~I~iwd~~ 551 (755)
| ++++|+++. .++.|.+|+..
T Consensus 301 ~-~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 P-DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp T-TSSEEEEEETTTTEEEEEEEE
T ss_pred C-CCCEEEEEecCCCeEEEEEEe
Confidence 9 778777776 56789998764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-08 Score=107.68 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=106.6
Q ss_pred EEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC---CeEEEEEec-CCcEEEEEEeeCCCCEEEEEe-CCCcEEEE--E
Q 004410 391 VLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI---DRCLRVFSH-NNYVTSVAFNPVDDNYFISGS-IDGKVRIW--E 457 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~-----Dg~V~iWdl~s---~~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iw--d 457 (755)
....+|+||| .|+..+. +..+.+|++.. +........ ........|+| |++.|+..+ .+|...|| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 3457899999 6665442 33445577765 333333332 23456789999 888777655 46655555 4
Q ss_pred cCC--CeEEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 458 VRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 458 l~~--~~~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+.. +....+......+....|+|||+.|+....+ ..|.+||+.+++.... . .....+....|+| +
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-----t----~~~~~~~~p~wSp-D 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-----T----TSPENKESPSWAI-D 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-----c----CCCCCccceEECC-C
Confidence 432 3334444455567789999999999876653 3699999998876431 1 1123456789999 7
Q ss_pred CCEEEEEEC---CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 533 PSKVIVTSA---DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 533 ~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
+++|+.... ...|.++++........ ....+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~L---t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKI---VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEe---ecCCCcccCceecCCC
Confidence 777765443 34677788765433322 2233455667787643
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-10 Score=131.46 Aligned_cols=227 Identities=19% Similarity=0.306 Sum_probs=160.3
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.++.-+|...+.++|+.||.|++|....+..... .++ .|. ..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~----~rt-~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVC----FRT-AGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEE----eec-cCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence 44555677789999999999999999999876543322 111 233 789999999999999999999999999864
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.+|....+.|.....++
T Consensus 2282 ---------------------------------------------------------------pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2282 ---------------------------------------------------------------PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred ---------------------------------------------------------------CcceeccccCCccccce
Confidence 12344556787778888
Q ss_pred EEcCCCeEEEE---eCCCcEEEEeCCC--CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC
Q 004410 395 SWSKNGFLLSS---SADKTVRLWQVGI--DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 395 ~~s~~~~L~s~---s~Dg~V~iWdl~s--~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
.|... .++++ +.++.+.+||.-- +..+....|.+.++++++.| ...+|++|+.+|.|++||++..+++.....
T Consensus 2299 ~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2299 RFIGS-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred eeeeh-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence 88763 44444 3678999999642 22222245999999999999 899999999999999999998887642221
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
++ ...+|++|+..|.++||++..-.++..+.... .+.. --...+.+..-.-.+.|.+++.|++
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-ak~g--fFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-AKQG--FFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEccccchhhcCchhh-cccc--hhhhcCceeeeccCceEEEecCCCC
Confidence 33 55789999999999999999877665443211 1000 0112223333324456777777653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-08 Score=106.13 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=117.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v 476 (755)
.++-|...|.|.+|++..++....+. |.+.|+++.++. +-..|.+++.|+.+..|+...++.+ .+......+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 78888899999999999999988884 999999999997 8899999999999999999999888 577778889999
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC----CCCEEE-EEECCCcEEEEECC
Q 004410 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS----DPSKVI-VTSADSLVRVLCGE 551 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~----d~~~l~-s~s~Dg~I~iwd~~ 551 (755)
+++|||+.+++++ +.|++||+.+++.+.. ...|...|.+++|.-. -+.+++ +...+..+.+|-..
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~--------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVIT--------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEE--------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999999887 7899999999998864 4457889999998763 134444 44556667777544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-09 Score=105.83 Aligned_cols=267 Identities=14% Similarity=0.152 Sum_probs=189.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+.+.||.+.|++...-|-..-+++++.|.++|||--.+ ++.-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------------- 62 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------------- 62 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch---------------------------------
Confidence 3456889999999999988888899999999999995322 111000
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CeEEEEE-ecC
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVF-SHN 428 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s----~~~~~~~-~h~ 428 (755)
+. ..-..++.++.+.+.. .|+.+-..|++.-+.+.. ...++.+ .|.
T Consensus 63 --------------------------I~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 63 --------------------------IY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred --------------------------hh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh
Confidence 00 1124567888898888 888888889998886543 2233333 499
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
..|..+-|+- ....+++.+.|..+...-.+.+..+.-.......+++.+.-. +..+|...|.|.+-.+....+.
T Consensus 115 ~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~--- 188 (404)
T KOG1409|consen 115 ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ--- 188 (404)
T ss_pred cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc---
Confidence 9999999997 788999999998887766666554421111222222222222 6667777777766655433332
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
+-.....|...++++.|.| ....+++|..|..|.+||+.-...... ...+|...|..++..+--+.+++++.||.
T Consensus 189 ---~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~-el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 189 ---LITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAY-ELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ---eEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceee-eeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 1123456788999999999 889999999999999999765433322 23678888988888888899999999999
Q ss_pred EEEEEcCCCCcccCCCccccceeeee
Q 004410 589 IYIWNYSNQDKSSSRSKSIWSCESFL 614 (755)
Q Consensus 589 I~iWd~~~~~~~~~~~~~~~~~~~f~ 614 (755)
|.+|+++..+.+....+..+.|+++.
T Consensus 264 i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 264 IVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred EEEEeccceeecCccccccchhhhhC
Confidence 99999998886666666666665553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-08 Score=110.86 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred EEEEEEcCCC-eEEEEe-CCCcEEEE--eCCC-CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 391 VLDLSWSKNG-FLLSSS-ADKTVRLW--QVGI-DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID---GKVRIWEVRRC 461 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s-~Dg~V~iW--dl~s-~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~D---g~V~iwdl~~~ 461 (755)
....+|+||| .|+..+ .++...|| ++.. +.....+ .+...+....|+| +++.|+..+.+ ..|.+||+.++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCC
Confidence 4567999999 666655 46655555 4432 2223333 3456778899999 89888776543 36999999999
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEe
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLY 505 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~ 505 (755)
+...+......+....|+|||+.|+.... ...|+++|+.+++..
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 88766655556778999999998876543 345888899877653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-07 Score=95.98 Aligned_cols=246 Identities=11% Similarity=0.044 Sum_probs=145.5
Q ss_pred eecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc-e-eeecccccEEEEEEecCCCEEEEEcC--CCc
Q 004410 242 TLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG-Q-EFLAHEGSILTMKFSLDGQYLASGGE--DGT 307 (755)
Q Consensus 242 ~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~-~-~l~~H~~~V~~l~fspdg~~LaSgs~--Dg~ 307 (755)
.++|||+.|+.+. .+..|.|||..+....- .+... . +++ ....-..++++|||++|+.... +..
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCE
Confidence 3999999877664 47899999987654321 11110 0 000 1122346889999999998763 689
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|-|.|+.+++.+.++..+. ...++........+.+.+. . . .......++....-...++.....++.
T Consensus 130 V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~~~~~Dg--~-~---~~v~~d~~g~~~~~~~~vf~~~~~~v~----- 196 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFFMHCRDG--S-L---AKVGYGTKGNPKIKPTEVFHPEDEYLI----- 196 (352)
T ss_pred EEEEECCCCcEEEEEeCCC--CcEEEEecCCccEEEeecC--c-e---EEEEecCCCceEEeeeeeecCCccccc-----
Confidence 9999999999999888743 1122222222111111111 1 0 001111111111111111110001110
Q ss_pred CCCEEEEEEcC-CCeEEEEeCCCcEEEEeCCC-----CeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeC----
Q 004410 388 SSEVLDLSWSK-NGFLLSSSADKTVRLWQVGI-----DRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSI---- 449 (755)
Q Consensus 388 ~~~V~~l~~s~-~~~L~s~s~Dg~V~iWdl~s-----~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~---- 449 (755)
..+ .|.+ ++..+-.+..|+|.+-|+.. .+....+. ..+.+.-++++| +++.++....
T Consensus 197 ~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 197 NHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAK 271 (352)
T ss_pred cCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCcc
Confidence 111 3455 66444444449999999543 33333321 233445599999 7777766431
Q ss_pred ------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEe-CCCcEEEEECCCCeEeee
Q 004410 450 ------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGT-MTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 450 ------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs-~dg~I~iwD~~~~~~~~~ 507 (755)
.+.|.++|..+++++........+..++++||++ +|++.. .++.|.++|+.+++.+..
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 2479999999999998777788999999999999 777766 578899999999988764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=101.95 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=141.7
Q ss_pred cCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe------c--------------CCCEEEEEc
Q 004410 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS------L--------------DGQYLASGG 303 (755)
Q Consensus 244 spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs------p--------------dg~~LaSgs 303 (755)
.|...++|....||.++||+..++..... +.+.+. -.+..++.+|. | |...||-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e-~~p~~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE-FAPIAS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee-eccchh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 45667899999999999999876543211 111111 12334444442 1 223566666
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
..|.|.++++..++....+.
T Consensus 78 ~~g~v~~ys~~~g~it~~~s------------------------------------------------------------ 97 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLS------------------------------------------------------------ 97 (541)
T ss_pred CCccEEEEEecCCeEEEEEe------------------------------------------------------------
Confidence 67777777776665433221
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
-.+|.+.|.++.++.+- .|.+++.|+.+..|+....+.++.+. ....+.+++++| |+..+++++ +.|++||+.++
T Consensus 98 t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 98 TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCc
Confidence 24688999999998876 99999999999999999999999886 677899999999 899999887 78999999999
Q ss_pred eEE-EeccCCcceEEEEEccC-----CCeEEEEe-CCCcEEEEECCC
Q 004410 462 QVV-DYTDIREIVSAVCYCPD-----GKGGIVGT-MTGNCRFYDIKD 501 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spd-----g~~la~gs-~dg~I~iwD~~~ 501 (755)
+++ .+.+|.+.|.++.|..+ |.+++++. .+..+.+|-+..
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 988 78999999999999887 77776643 344577776654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-06 Score=103.05 Aligned_cols=346 Identities=15% Similarity=0.208 Sum_probs=200.8
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCC--------------Ccccc-------cccccc----------------
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKK--------------QSREL-------SSLYTG---------------- 277 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~--------------~~~~~-------~~~~~~---------------- 277 (755)
...+.+++||||+..||..+.++++.+-...- ..+.+ .+.+.+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 34678899999999999999999987763210 00000 000000
Q ss_pred ----eeeecccccEEEEEEecCCCEEEEEcC---C---CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEee
Q 004410 278 ----QEFLAHEGSILTMKFSLDGQYLASGGE---D---GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV 347 (755)
Q Consensus 278 ----~~l~~H~~~V~~l~fspdg~~LaSgs~---D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (755)
..+. +.+.-..|.|-.||.|+|+.+. . ..||||+-+ |.....-.....-..++.|.|.+. .++....
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~ 276 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQR 276 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEE
Confidence 0112 4445667899999999998764 2 579999854 554333332233344556666552 2222211
Q ss_pred cCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE--
Q 004410 348 DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV-- 424 (755)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~-- 424 (755)
......++.+.....+..+- ...+......|..|.|++++ .|+..-.| .|.+|-..+...-..
T Consensus 277 ------------~~~~~~VvFfErNGLrhgeF-~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 277 ------------LPDRHDVVFFERNGLRHGEF-TLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQE 342 (928)
T ss_pred ------------cCCCcEEEEEecCCcEeeeE-ecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEE
Confidence 11123333333322111110 01112345678999999999 66655544 499999887653222
Q ss_pred E--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC----C----------------CeEEE----------------e
Q 004410 425 F--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR----R----------------CQVVD----------------Y 466 (755)
Q Consensus 425 ~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~----~----------------~~~~~----------------~ 466 (755)
+ .....+..+.|+|.+...|...+.+|.+..+++. . |..+. .
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 2 2344566699999878888888887877665542 1 11111 1
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee------eeeEEe----cccccCCCCCeEEEEEcCCCCCEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ------QNQICL----QGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~------~~~~~~----~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
......|.+++|++++..+++-..||.|.+|......... ...+.. ..........+..+.|.. +...+
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 501 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLL 501 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEE
Confidence 1234679999999999889999999999999865433221 000100 011122355678888887 44555
Q ss_pred EEEECC---CcEEEEECCcceee-EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 537 IVTSAD---SLVRVLCGENVVGK-FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~D---g~I~iwd~~~~~~~-~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++...+ ..+.+++..+.... .........+.+..+...++...++.-..||.|+..+.....
T Consensus 502 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 502 VLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 555443 67777876443222 112123344556666666665557777889999977766554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=91.21 Aligned_cols=192 Identities=14% Similarity=0.048 Sum_probs=136.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~ 474 (755)
.+..++.|.++++.++..+...... |. -.+.++.+++ +++++++.+....|..|.+...... ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 6777888999999988655433322 32 3388999999 9999999999999999999764321 3444555667
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC-CEEEEEECCCcEEEEECCcc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP-SKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~-~~l~s~s~Dg~I~iwd~~~~ 553 (755)
+..|+.....+|+++.||++.|||++........ ....+..|.+.+..+.|+|.+. .+|+..-.-+.+.|.|+++.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 8899999999999999999999999975543211 1223445889999999998333 35666666789999999886
Q ss_pred eeeEEEeee-----cc-CCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAF-----RV-AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~-----~~-~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
......... .| ...|...+|+.++..+.+.+++ .++-|++....
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 543332111 12 2347888888888887777765 56677766543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-09 Score=102.30 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=149.6
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc------------ccEEEEEEecCCC--EEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE------------GSILTMKFSLDGQ--YLA 300 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------~~V~~l~fspdg~--~La 300 (755)
.+.++++.|...|.+|++|...|+|.++.-.+....-. ....++++|+ ..|..+.|-.++. .++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey--kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY--KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccch--hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35677899999999999999999999998654431111 1123455554 4688999976553 455
Q ss_pred EEcCCCcEEEEEccCCeee--eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
..+.|.+|++|.+...... .+-..... ..+... ..+.. ......-+.+....++. .
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~----~~~~~~--g~~~s-------~~~l~lprls~hd~iia---------a 161 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDS----FHSPMG--GPLTS-------TKELLLPRLSEHDEIIA---------A 161 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccc----cccccC--CCcCC-------HHHhhcccccccceEEE---------e
Confidence 5678999999998665321 11000000 000000 00000 00000000111111111 1
Q ss_pred ccceEe-cCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe-EEEEE---ec-----CCcEEEEEEeeCCCCEEEEEe
Q 004410 379 KPLHEF-QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR-CLRVF---SH-----NNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 379 ~~~~~~-~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~-~~~~~---~h-----~~~V~~i~fsp~d~~~l~sgs 448 (755)
+|.+.. ..|...|.++.++.+...+.++.|-.|.+|++..-. +.... .| ..-|++..|+|...+.|.-.+
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs 241 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS 241 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec
Confidence 222222 568888999999999855555678889999986432 22222 12 346899999998888888889
Q ss_pred CCCcEEEEEcCCCeEE-----------------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe
Q 004410 449 IDGKVRIWEVRRCQVV-----------------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~-----------------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
..|.|++-|++...+. .+......|..+.|+++|+++++-+. -+|+|||++..+
T Consensus 242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9999999999853221 01122346788999999999988653 589999998654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-07 Score=108.65 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=137.5
Q ss_pred CEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEec-----------------CCcEEEEEEeeCCCCEEEEEeCC
Q 004410 390 EVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFSH-----------------NNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~h-----------------~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
....+++.+++ .|+.+ ...+.|+++|..++........ -.....++|+|.++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45678898876 45444 4557899999877654322110 12346899999566777888888
Q ss_pred CcEEEEEcCCCeEEEeccC---------------CcceEEEEEccCCCeEEE-EeCCCcEEEEECCCCeEeeeeeE----
Q 004410 451 GKVRIWEVRRCQVVDYTDI---------------REIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQQNQI---- 510 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~---------------~~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~~~~~~~~~---- 510 (755)
+.|++||..++.+..+.+. -.....|+++|+|+.|++ -+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765433211 123567999999985555 45568999999987653211000
Q ss_pred --Ee--cccc-----cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-----------eccCCceEE
Q 004410 511 --CL--QGKK-----KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-----------FRVAGSQMF 570 (755)
Q Consensus 511 --~~--~~~~-----~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-----------~~~~~~v~~ 570 (755)
.+ .+.. ........++++++ ++.++++-..++.|++||..+......... ...-.....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00 0000 00112346889998 778888888999999999876433221100 011125678
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++++|+.+++-+.++.|++||+.+++
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999999998865
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-08 Score=96.04 Aligned_cols=233 Identities=16% Similarity=0.203 Sum_probs=151.9
Q ss_pred eeEEeeCCCeEEEEECCCCcc--cccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 249 ELTLGQRMRRVRVHPVKKQSR--ELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 249 ~lasgs~dg~V~Vw~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.|+-+...|.|.++....... .+..+...+ + ....-.++.|++.+..++++-.+|.+.+-+......
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k-i--~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-------- 155 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKK-I--SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-------- 155 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhh-h--hheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--------
Confidence 455566778888876543211 111111110 0 011245778888888888888888887443322210
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEE
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s 404 (755)
+.++.++.|.-+.+.+.|+... .+.+
T Consensus 156 ----------------------------------------------------e~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 156 ----------------------------------------------------EKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ----------------------------------------------------eecccccccceeeeeeecccCCCceEEe
Confidence 1134567899999999998765 8899
Q ss_pred EeCCCcEEEEeCC-CCeEEEE--EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEEeccCCcceEEEEEcc
Q 004410 405 SSADKTVRLWQVG-IDRCLRV--FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 405 ~s~Dg~V~iWdl~-s~~~~~~--~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~~~~~~~~V~~v~~sp 480 (755)
|+.|+.+..||++ .++++.. ..|...|.+|.-+|..+.++++|+.|..|++||.+ -++.+.-....+.|..++.+|
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecc
Confidence 9999999999999 4444333 13899999999999788999999999999999999 567776666779999999999
Q ss_pred CC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEE-EE
Q 004410 481 DG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVR-VL 548 (755)
Q Consensus 481 dg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~-iw 548 (755)
.- ..+++++.-.-.+|-++..+... +++.+.. .+.|..-.++-.|.. ....+++++ .|..++ +|
T Consensus 264 ~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~~s-~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 264 EIFHRLLAACMHNGAKILDSSDKVLE--FQIVLPS-DKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hhhhHHHHHHHhcCceEEEecccccc--hheeeec-cccccceeecccccc-ccceeeeeeccccceeeee
Confidence 43 23344444455677777765543 2222222 334555566666644 345677755 344433 44
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.1e-08 Score=105.63 Aligned_cols=353 Identities=13% Similarity=0.103 Sum_probs=206.0
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec---CC-CEEEEEcCCCcEEEEEccCCeeeeeee
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL---DG-QYLASGGEDGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp---dg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~ 323 (755)
-++|++...|+|.|||....... ..+..|.++|..++|-+ +. .+|+.-....+|.+|+..+|+......
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 36778888999999997654432 23677899999999976 33 466666667899999999999888777
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecC-------------cceee-eeeeeecCC--------------------------
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDK-------------EKIDK-TKSLRKSSD-------------------------- 363 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~-~~~~~~~~~-------------------------- 363 (755)
.......|..+-+-+...+......+ ....+ ..+.....+
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 66655555554444433332221111 00011 111000000
Q ss_pred ------------ceEEEeCCcc--eec-cCccceEecCCCCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCC------
Q 004410 364 ------------LTCVVLPPKV--FRL-LEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADKTVRLWQVGID------ 419 (755)
Q Consensus 364 ------------~~~~~~~~~~--~~~-~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~------ 419 (755)
...+.++... +++ .+.++....-..+.+.-+.|.|+. .|.+.-.||.+.+|--+..
T Consensus 233 ~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred HHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 0000011111 000 012222222334455567777876 7888999999999964431
Q ss_pred ----------eEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE----------------------
Q 004410 420 ----------RCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---------------------- 465 (755)
Q Consensus 420 ----------~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---------------------- 465 (755)
.....+. .+-.+......|.+.+.++.--.+|.+.+|.+.+++...
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v 392 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV 392 (1062)
T ss_pred cchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence 1111111 222233344456445556666668888889887443110
Q ss_pred ----------eccCCcceEEEEEcc-----------CC-------CeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 466 ----------YTDIREIVSAVCYCP-----------DG-------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 466 ----------~~~~~~~V~~v~~sp-----------dg-------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
-..|....++....| .| .++|+|+..|+|.++|+.++.+... ..
T Consensus 393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~--------fs 464 (1062)
T KOG1912|consen 393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS--------FS 464 (1062)
T ss_pred hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh--------hc
Confidence 011223333333322 22 2678999999999999999886543 33
Q ss_pred CCCCCeEEEEEcCCCCCEEEEE---------ECCCcEEEEECCccee-eEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVT---------SADSLVRVLCGENVVG-KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~---------s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.|...|.++.|.. ...++-.+ +.-+.+.|-|+.++.. .++........+|..+..|..|+||+..-.|.
T Consensus 465 vht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 465 VHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred ccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEeccc
Confidence 4677888888875 33333222 1224466777776543 34433345667899999999999999999999
Q ss_pred cEEEEEcCCCCcccCCCccccceeeeecCCeEEEEcCC
Q 004410 588 NIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWV 625 (755)
Q Consensus 588 ~I~iWd~~~~~~~~~~~~~~~~~~~f~~~~~~va~~w~ 625 (755)
-+-|||+++-.......+. + +...++.|.
T Consensus 544 plEiwd~kt~~~lr~mS~a---~------P~it~leWs 572 (1062)
T KOG1912|consen 544 PLEIWDLKTLRMLRLMSLA---L------PLITVLEWS 572 (1062)
T ss_pred chHHHhhccchHHHHHhhc---C------CcEEEEeec
Confidence 9999999776532222221 1 445677786
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-07 Score=97.86 Aligned_cols=278 Identities=17% Similarity=0.239 Sum_probs=165.6
Q ss_pred cceeecCCCCeeEEe-----eC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 239 GSATLKPGDHELTLG-----QR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 239 ~~~~~spdg~~lasg-----s~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+-|+|-|.+|.+- .. .-.+++|++.+ ...... ++.....=|++.|++|..+.|-- ..+.|
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~------~q~k~Q~~W~~qfs~dEsl~arl-v~nev 148 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQ------IQKKMQNGWVPQFSIDESLAARL-VSNEV 148 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeecc-ceehhh------eehhhhcCcccccccchhhhhhh-hcceE
Confidence 346777777777652 11 23477998776 221111 22222222799999987654332 34579
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCc-eeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc--eEec
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ-LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL--HEFQ 385 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 385 (755)
++|++.+.+.+. -..+...+....+++..... ++...... ++....+.++.... .....++ .+|
T Consensus 149 ~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~----------kGaPa~vri~~~~~-~~~~~~~a~ksF- 215 (566)
T KOG2315|consen 149 QFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK----------KGAPASVRIYKYPE-EGQHQPVANKSF- 215 (566)
T ss_pred EEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC----------CCCCcEEEEecccc-ccccchhhhccc-
Confidence 999987643221 11222333334444442222 22111111 11111222221110 0000111 111
Q ss_pred CCCCCEEEEEEcCCC--eEE--EEeCCC---------cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE--EeCC
Q 004410 386 GHSSEVLDLSWSKNG--FLL--SSSADK---------TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS--GSID 450 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~--s~s~Dg---------~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s--gs~D 450 (755)
....-..+.|++-| .|+ +..-|+ ++++.++....+...+...++|.++.|+| +++-|++ |-.=
T Consensus 216 -Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 216 -FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMP 293 (566)
T ss_pred -cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEeccc
Confidence 12333458898877 333 333343 68888888777777777899999999999 7776654 5566
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.++.|+|++..-+..+ ..++-.++-|+|.|++|+.++- .|.+-|||+.+.+++..+. ...-+-+.
T Consensus 294 Akvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----------a~~tt~~e 361 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----------AANTTVFE 361 (566)
T ss_pred ceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----------cCCceEEE
Confidence 7899999987665543 3456678999999999998775 4789999999977664322 23456789
Q ss_pred EcCCCCCEEEEEEC------CCcEEEEECCc
Q 004410 528 FSPSDPSKVIVTSA------DSLVRVLCGEN 552 (755)
Q Consensus 528 fsp~d~~~l~s~s~------Dg~I~iwd~~~ 552 (755)
|+| |+.++++++. |+.++||+...
T Consensus 362 W~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 362 WSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 999 8888888765 68888998653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-06 Score=87.07 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=140.3
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEE-e--------c---CCcEEEEE-EeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVF-S--------H---NNYVTSVA-FNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~--------h---~~~V~~i~-fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+.||.-+.-++-|.|.+||..+....+.- . . ..+..-+. |++.++++++..| .|+..|.+.-.+-.
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCee
Confidence 44664444566688999998876554322 1 0 01111122 5556788888887 47888888777766
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
++. ++...|.-..+.-+++.++.|..|| .+-|||..++.... ....-+.|.++..+| ++++++++...
T Consensus 354 iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------~e~~lg~I~av~vs~-dGK~~vvaNdr 422 (668)
T COG4946 354 IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------IEKDLGNIEAVKVSP-DGKKVVVANDR 422 (668)
T ss_pred EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---------eeCCccceEEEEEcC-CCcEEEEEcCc
Confidence 664 4455588888888999999999999 79999999987543 223457899999999 99999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC----cEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS----NIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg----~I~iWd~~~~~ 598 (755)
..|.++|+.+...+..- ....+-|+...|+|++++||-+--+| .|+++|+.+++
T Consensus 423 ~el~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 423 FELWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred eEEEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 99999999887666554 44567899999999999999887665 58999998876
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-06 Score=107.70 Aligned_cols=267 Identities=10% Similarity=0.067 Sum_probs=161.0
Q ss_pred ceeecCC-CCeeEEeeCCCeEEEEECCCCccccccccccee------eecccccEEEEEEecCCCEEEEEc-CCCcEEEE
Q 004410 240 SATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQE------FLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (755)
Q Consensus 240 ~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~------l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vW 311 (755)
.++++++ +.++++-..+++|++++...............- -.++-.....|+++++++.|+.+. ..+.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 4888875 557777778899999997543211000000000 011223457899999888665554 45689999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
|+.++.. ..+........ .. .+... ..... ...-
T Consensus 652 d~~~~~V-~tlag~G~~g~---------------~~-----------~gg~~---------------~~~~~----ln~P 685 (1057)
T PLN02919 652 DFVNETV-RTLAGNGTKGS---------------DY-----------QGGKK---------------GTSQV----LNSP 685 (1057)
T ss_pred ecCCCEE-EEEeccCcccC---------------CC-----------CCChh---------------hhHhh----cCCC
Confidence 9866542 22211000000 00 00000 00000 1123
Q ss_pred EEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---------------cCCcEEEEEEeeCCCC-EEEEEeCCCcE
Q 004410 392 LDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVDDN-YFISGSIDGKV 453 (755)
Q Consensus 392 ~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---------------h~~~V~~i~fsp~d~~-~l~sgs~Dg~V 453 (755)
.++++++ ++ .+++.+.++.|++||..++....... .-.....|+++| +++ ++++-+.++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 5789999 45 66677788999999998776542211 012456799999 776 66667778999
Q ss_pred EEEEcCCCeEEEecc----------------------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 454 RIWEVRRCQVVDYTD----------------------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~----------------------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
++||+.++......+ .-.....++++++|..+++-+.++.|++||..++.........
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 999998765321110 0112468999999998888888999999999987665321100
Q ss_pred eccc-----ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce
Q 004410 512 LQGK-----KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 512 ~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
..+. .........++++++ +++++++-+.++.|++||..+..
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCc
Confidence 0000 111224578899999 78888888899999999987643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-06 Score=83.81 Aligned_cols=261 Identities=14% Similarity=0.213 Sum_probs=163.0
Q ss_pred cCcceeecCCCCeeEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWd 312 (755)
..+-++|+|+++.|.++.. .|.|-.|.+......+..+.. +.+.++. -..++++++|++|+++.. -|.|.|+-
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~--p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSP--PCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCC--CeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3444999999999988765 478888888765333432222 2233322 278999999999999875 46889988
Q ss_pred ccCCeeeeee-ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 313 VIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 313 v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
+++...+... ... ...+.-.+ .+.-..-+
T Consensus 118 ~~~dG~l~~~v~~~-------------------------------------------------~h~g~~p~-~rQ~~~h~ 147 (346)
T COG2706 118 LQADGSLQPVVQVV-------------------------------------------------KHTGSGPH-ERQESPHV 147 (346)
T ss_pred cccCCccccceeee-------------------------------------------------ecCCCCCC-ccccCCcc
Confidence 8653221110 000 00000000 01111226
Q ss_pred EEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCC--Ce
Q 004410 392 LDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRR--CQ 462 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~--~~ 462 (755)
....+.|++ +|++..- --.|.+|++..+++...- .....-..|.|+| ++++.+. .-.+++|-+|.... ++
T Consensus 148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCce
Confidence 778899999 6665542 235899999877654332 3567789999999 8888755 45689999999887 33
Q ss_pred EEEec---------cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 463 VVDYT---------DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 463 ~~~~~---------~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
...+. ......-+|.++|||++|.++.. ...|.+|.+. ++++... .....++..-..+.|+|
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~------~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV------GITPTEGQFPRDFNINP 300 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE------EEeccCCcCCccceeCC
Confidence 32221 22345778999999999988653 2357777665 3443322 22333444567899999
Q ss_pred CCCCEEEEEEC-CCcEEEEECCcceeeEE
Q 004410 531 SDPSKVIVTSA-DSLVRVLCGENVVGKFK 558 (755)
Q Consensus 531 ~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~ 558 (755)
++++|+++.. ...|.+|........+.
T Consensus 301 -~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 301 -SGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred -CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 6777766655 45788887765544443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-06 Score=91.98 Aligned_cols=298 Identities=14% Similarity=0.088 Sum_probs=167.9
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
.+..+++++.+|.|..+|..++..... ......+ .. ... .++..++.++.++.|..+|..+|+.+......
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~-~~~~~~~---~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWR-VDLDERL---SG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeee-ecCCCCc---cc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 366788888889999998765543222 1111111 11 122 24677888889999999999999887665433
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE-----EEEEEcCCC
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV-----LDLSWSKNG 400 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-----~~l~~s~~~ 400 (755)
........ . .....+....++.+..++.+..+. +.++......+ ...... ++
T Consensus 135 ~~~~~~p~-------------v-----~~~~v~v~~~~g~l~a~d~~tG~~----~W~~~~~~~~~~~~~~~sp~~~-~~ 191 (377)
T TIGR03300 135 SEVLSPPL-------------V-----ANGLVVVRTNDGRLTALDAATGER----LWTYSRVTPALTLRGSASPVIA-DG 191 (377)
T ss_pred ceeecCCE-------------E-----ECCEEEEECCCCeEEEEEcCCCce----eeEEccCCCceeecCCCCCEEE-CC
Confidence 21000000 0 001112223344455554432211 11111111000 001111 34
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCC-----c---EEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----Y---VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-----~---V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
.++.+..++.+..+|+.+++.+....... . +..+.-.| ..+..++.++.+|.++.||..+++.+.......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~ 271 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS 271 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence 67778888999999999998765442110 0 00010011 134678888889999999999988764332221
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..... .++..+++++.+|.++.+|..+++.+..... + .......... .+..|++++.+|.|+++|..
T Consensus 272 -~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~------~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 272 -YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE-L------KYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc-c------cCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 11222 3567888889999999999999987643210 0 1111122222 34688899999999999988
Q ss_pred cceeeEEEeeeccCCce-EEEEEecCCCEEEEEeCCCcEEEE
Q 004410 552 NVVGKFKASAFRVAGSQ-MFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v-~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+........ .+...+ .+..+. + ..|+.++.||.|+.|
T Consensus 339 tG~~~~~~~--~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLK--TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEE--cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 766555442 222222 223332 3 458899999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-05 Score=84.99 Aligned_cols=275 Identities=10% Similarity=0.144 Sum_probs=176.2
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC-cEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG-TVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg-~I~vWdv~~~~~~~~~~~ 324 (755)
+|.++|..+. |...|.+...+. . .-.+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~-------~--iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------ 394 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY-------S--IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------ 394 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe-------e--EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------
Confidence 4566666555 445554422111 1 1246888899999988888999999999 899999877752
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
..+.+.-+.|.++..+++| +++
T Consensus 395 ---------------------------------------------------------kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 395 ---------------------------------------------------------KRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred ---------------------------------------------------------EEeeCCccceEEEEEcCCCcEEE
Confidence 2344566789999999999 788
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEEEeccCCcceEEEEE
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDIREIVSAVCY 478 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~~~~~~~~~V~~v~~ 478 (755)
.+.....|.+.|+.+++....-+ ..+-|+.++|+| +.+++|-+--+| .|+++|+.+++..........-.+-+|
T Consensus 418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF 496 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF 496 (668)
T ss_pred EEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence 88888889999999998755443 678899999999 999999877665 699999999999887777776778899
Q ss_pred ccCCCeEEEEeCC---Cc--EEEEECCCCeEeeeeeEEeccccc-----------CC---------CCCeEEEEEcCCCC
Q 004410 479 CPDGKGGIVGTMT---GN--CRFYDIKDNQLYQQNQICLQGKKK-----------LP---------GKRITGFQFSPSDP 533 (755)
Q Consensus 479 spdg~~la~gs~d---g~--I~iwD~~~~~~~~~~~~~~~~~~~-----------~~---------~~~I~~v~fsp~d~ 533 (755)
.|||++|..-+.. -. =.+++..-........+.+..... .. ...+.-+-..+ ..
T Consensus 497 D~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~d 575 (668)
T COG4946 497 DPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GD 575 (668)
T ss_pred CCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCc-cc
Confidence 9999988665431 11 112222211111111111110000 00 00111111122 22
Q ss_pred CEEEEEECCCcEEEEECC------------cce---eeEEEe---eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 534 SKVIVTSADSLVRVLCGE------------NVV---GKFKAS---AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~------------~~~---~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
...+++-.+|.|.++... ... .++... .......+.++..|+||++|+. -.||.+++++++
T Consensus 576 Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~ve 654 (668)
T COG4946 576 YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVE 654 (668)
T ss_pred eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEecc
Confidence 344455556666665421 000 011110 0113457889999999999998 889999999998
Q ss_pred C
Q 004410 596 N 596 (755)
Q Consensus 596 ~ 596 (755)
.
T Consensus 655 k 655 (668)
T COG4946 655 K 655 (668)
T ss_pred c
Confidence 6
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.7e-08 Score=117.97 Aligned_cols=190 Identities=17% Similarity=0.182 Sum_probs=152.6
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.|-..|.++.-+|.. +.++|+.||.|++|.-..++.+..+. .+..|+.+.|+. .|+.+..+..||.+.+|.+....
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCcc
Confidence 355678888888887 89999999999999999998888885 458899999998 89999999999999999999777
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
...+..|....+.+.|-. ..+++++ .++.+.+||..-.....- ....|....+++++.| ....+++|
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-------v~~~H~~gaT~l~~~P-~~qllisg 2354 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-------VHTCHDGGATVLAYAP-KHQLLISG 2354 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-------eeeecCCCceEEEEcC-cceEEEec
Confidence 778888999888888865 5666643 467899999764332211 1256888999999999 89999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.+|.|.+||+...... |.-.. +. ...++++|+..|.|+||++....
T Consensus 2355 gr~G~v~l~D~rqrql~-------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLR-------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCcCcEEEeehHHHHHH-------HHhhh----hh-hhheeeccCcccceEEEEccccc
Confidence 99999999998753322 21111 33 56799999999999999998764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=106.01 Aligned_cols=246 Identities=15% Similarity=0.246 Sum_probs=163.1
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.||+..|..++--.+.+-+++++.|++|++|.+..... ....
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~t---------------------------- 773 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIGT---------------------------- 773 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------cccc----------------------------
Confidence 45789999999998777788899999999999999854310 0000
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTS 433 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~ 433 (755)
.....++..|+.+|.++.|-.+. +++ +.|+.|++||.-.+..+.... ..+.+..
T Consensus 774 --------------------saCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ 831 (1034)
T KOG4190|consen 774 --------------------SACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGN 831 (1034)
T ss_pred --------------------ceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCce
Confidence 11234667899999999998876 544 568999999987777765331 2233333
Q ss_pred EEEeeC-CCCEEEEE-eCCCcEEEEEcCCCeEE-Ee-----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 434 VAFNPV-DDNYFISG-SIDGKVRIWEVRRCQVV-DY-----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 434 i~fsp~-d~~~l~sg-s~Dg~V~iwdl~~~~~~-~~-----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+..-|. +..+++.| +...+|+++|.+.+..+ .+ ......+.+++..+.|+.++++-.+|.|.+.|.++|+.+
T Consensus 832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 333332 44555554 78899999999987655 22 233456899999999999999999999999999999876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE-EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV-LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i-wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
..+.. ....+..++ .| ....++....|..+.| |...+....++. .....+..-+ -.-|.-|+++.
T Consensus 912 Nswrp--------mecdllqla-ap-sdq~L~~saldHslaVnWhaldgimh~q~--kpppepahfl--qsvgpSLV~a~ 977 (1034)
T KOG4190|consen 912 NSWRP--------MECDLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIMHLQD--KPPPEPAHFL--QSVGPSLVTAQ 977 (1034)
T ss_pred ccCCc--------ccchhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCeeeecc--CCCCcchhhh--hccCceeEEec
Confidence 43221 011111111 23 4566777777888888 876555444433 1111111111 12366788887
Q ss_pred CCCcEEEEEc
Q 004410 585 EDSNIYIWNY 594 (755)
Q Consensus 585 ~Dg~I~iWd~ 594 (755)
....+.+|.-
T Consensus 978 ~Gn~lgVYad 987 (1034)
T KOG4190|consen 978 NGNILGVYAD 987 (1034)
T ss_pred cCcEEEEEec
Confidence 7778888864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-06 Score=90.47 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=177.0
Q ss_pred cCcceeecCCCCeeEEeeCCC---------------eEEEEECCCCcccccccccceeeecccccEE-EEEEecCCCEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMR---------------RVRVHPVKKQSRELSSLYTGQEFLAHEGSIL-TMKFSLDGQYLA 300 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg---------------~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~-~l~fspdg~~La 300 (755)
.+..+.|+|.+++|.+-.... .+.|||+..+.....-.... .....+ -++|+-+..|+|
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-----q~~~~Wp~~k~s~~D~y~A 147 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-----QPYLGWPVLKFSIDDKYVA 147 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC-----Ccccccceeeeeecchhhh
Confidence 355588999999998765443 38999987665433321111 112255 688999988887
Q ss_pred EEcCCCcEEEEEccCCeee-eeeecCC-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 301 SGGEDGTVRVWKVIEHERL-DGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
-.. ...++|+++ ++... ..+.... .......+++.+.... .+.+...+ ......+.++.... .
T Consensus 148 Rvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~-la~~tPEk--------~~kpa~~~i~sIp~----~ 212 (561)
T COG5354 148 RVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDE-LAYWTPEK--------LNKPAMVRILSIPK----N 212 (561)
T ss_pred hhc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCce-EEEEcccc--------CCCCcEEEEEEccC----C
Confidence 663 347999997 33211 1111100 1111112222211111 01111111 11112222221110 1
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEe-----------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-----------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s 446 (755)
.++.+-.-....=..+.|++.| +|+.-- ....++|+++....+-......++|...+|.| .++.|++
T Consensus 213 s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p-~S~~F~v 291 (561)
T COG5354 213 SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP-LSSRFAV 291 (561)
T ss_pred CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc-cCCceeE
Confidence 1111111111122457888888 333211 12457888887444433335689999999999 6665544
Q ss_pred --EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 447 --GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 447 --gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
|..+..+.++|++.. +.+......=..+.|+|.++++++++-+ |.+.+||..+....... ....
T Consensus 292 i~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~---------~~~~ 360 (561)
T COG5354 292 ISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA---------FNGL 360 (561)
T ss_pred Eecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE---------eecC
Confidence 457889999999987 3334444555678899999999997765 67999999877654311 1123
Q ss_pred CeEEEEEcCCCCCEEEEEE------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 522 RITGFQFSPSDPSKVIVTS------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
...-+.|+| |+.++.+.. .|..|.|||+.... + ...+.+.|.|.|++..+.+.+.
T Consensus 361 n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~---------~-fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 361 NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK---------V-FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CceEeeccC-CceEEEecCCCcccccCcceEEEEecCch---------h-hhhhhccccCCcccceeeccCC
Confidence 445578999 888777764 37889999865311 1 1456788999999988887765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-06 Score=93.66 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=126.9
Q ss_pred CEEEEEEcCCC-e-EEEEeCC---CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEE-EeCC--CcEEEEEcCCC
Q 004410 390 EVLDLSWSKNG-F-LLSSSAD---KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFIS-GSID--GKVRIWEVRRC 461 (755)
Q Consensus 390 ~V~~l~~s~~~-~-L~s~s~D---g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~s-gs~D--g~V~iwdl~~~ 461 (755)
.+....|+|+| . ++..+.+ ..|.++|+.+++........+.+....|+| |++.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999999 4 5544433 569999999998877666667777889999 8876654 4334 46888899888
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+...........|+|||+.|+..+.. | .|+++|+.++...... ..+ . ....|+| +++.|+.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~~g------~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---FHG------K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---cCC------C--cCceECC-CCCEEEE
Confidence 877666655545567899999988877643 3 5888888887653211 111 1 1248999 7777766
Q ss_pred EECC---------CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004410 539 TSAD---------SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYSNQ 597 (755)
Q Consensus 539 ~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~~~ 597 (755)
.... ..|.+.|.......... .........|+|||+.|+..+.++ .|.+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT----~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLT----ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECC----CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6543 25777776654322211 112334688999999887766432 3666666544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=99.77 Aligned_cols=81 Identities=23% Similarity=0.556 Sum_probs=71.1
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.+.||-+.+++++|+||+ +++++..|..|++-....-..+..| +|...|..++.-+ +..|++|+.|++|++||+.
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEecc
Confidence 346899999999999999 9999999999999888766666655 6999999999975 5669999999999999999
Q ss_pred CCeEEE
Q 004410 460 RCQVVD 465 (755)
Q Consensus 460 ~~~~~~ 465 (755)
+++.+.
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 998774
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-06 Score=82.76 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=117.0
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCC-----CCEEEEEeCCCcEEEE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVD-----DNYFISGSIDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d-----~~~l~sgs~Dg~V~iw 456 (755)
=..++|+||+ .||.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4569999999 8889999999999999764443 332 34567777786532 2357777788888877
Q ss_pred EcCCC-----eE---EEe-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 457 EVRRC-----QV---VDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 457 dl~~~-----~~---~~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
-+..+ +. ..+ ......|.++.|+|..++|++|+.... .++ ........+++-.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~------------~s~a~~~GLtaWR 186 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG------------MSKASSCGLTAWR 186 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc------------cccccccCceEEE
Confidence 76322 11 112 234678999999999998888775432 000 0111223444444
Q ss_pred EcCCCCCEEEEEECCCcE-------EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLV-------RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I-------~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+..+.+.+..+...+..+ .+|.+.+. .+..........|..+..||||..||+...+|.|.+|++.+-+
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF--KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccce--eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 443333333333332222 12222211 1111112356789999999999999999999999999998765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=97.12 Aligned_cols=282 Identities=13% Similarity=0.181 Sum_probs=185.2
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC------------CEEEEEcCC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG------------QYLASGGED 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg------------~~LaSgs~D 305 (755)
..++.|+|.|- +|.|+.. .|.|-|.. .+...|.+.-|...|+.++|.|-. -+||++...
T Consensus 18 ~~A~Dw~~~GL-iAygshs-lV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 18 RNAADWSPSGL-IAYGSHS-LVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccccCccce-EEEecCc-eEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 44578888874 4666654 46666633 344567788899999999998731 267888889
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|.+||+..+.. +..+.
T Consensus 89 GrIil~d~~~~s~--------------------------------------------------------------~~~l~ 106 (1062)
T KOG1912|consen 89 GRIILVDFVLASV--------------------------------------------------------------INWLS 106 (1062)
T ss_pred CcEEEEEehhhhh--------------------------------------------------------------hhhhc
Confidence 9999999876542 23345
Q ss_pred CCCCCEEEEEEcCCC-----eEEEEeCCCcEEEEeCCCCeEEEEEec-CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVGIDRCLRVFSH-NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWdl~s~~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.|...|.+++|-+.. .|++.....+|.+|+..+|+..-.+.. .....|+.+.|.+.+.|..-+..|.|.+-+.-
T Consensus 107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 677888889987632 677777889999999999998877753 44567799999998988888888888887653
Q ss_pred C-------CeEEEe-ccCCc------------c-------------eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 460 R-------CQVVDY-TDIRE------------I-------------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 460 ~-------~~~~~~-~~~~~------------~-------------V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
. ++..+. .+|.+ . .-.++|+|.-+.++.......+.++|++-...+.
T Consensus 187 ~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~ 266 (1062)
T KOG1912|consen 187 GLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA 266 (1062)
T ss_pred CCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE
Confidence 2 222221 11111 0 1235678877777777888899999998776665
Q ss_pred eeeEEecccccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcceeeEEEeee----ccCCceEEE----------
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVVGKFKASAF----RVAGSQMFA---------- 571 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~~~~v~~l---------- 571 (755)
...+ ..+.+.-+.+-|+ ....+++...||.+.+|-.......++.... .....+..+
T Consensus 267 vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~ 338 (1062)
T KOG1912|consen 267 VVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVI 338 (1062)
T ss_pred EEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccce
Confidence 4433 2234445667663 3347888899999999975543222222100 001111111
Q ss_pred -EEecC-CCEEEEEeCCCcEEEEEcCCCC
Q 004410 572 -TFTSD-GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 572 -~fspd-g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...|. ...++.--.+|.+.+|.+.+++
T Consensus 339 ~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 339 GASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred eecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 11222 3334444457889999999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-06 Score=92.44 Aligned_cols=139 Identities=12% Similarity=0.047 Sum_probs=89.4
Q ss_pred CCEEEEEEcCCC-eEE-EEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLL-SSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~-s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~ 461 (755)
+......|+||| .|+ +.+.+ ..|.++|+.+++......+........|+| |++.|+..+. .+ .|.++|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 344556799999 444 34333 568888988887655444444445678999 8887666553 33 5888899888
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+...+...... ...|+|||+.|+..... ..|.++|+.++.... +.. ........|+| |
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-----LT~-----~~~~~~p~~SP-D 378 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-----LTA-----NGVNQFPRFSS-D 378 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-----CCC-----CCCcCCeEECC-C
Confidence 77544332222 24899999999877654 268888988876532 111 11223478999 7
Q ss_pred CCEEEEEEC
Q 004410 533 PSKVIVTSA 541 (755)
Q Consensus 533 ~~~l~s~s~ 541 (755)
++.|+....
T Consensus 379 G~~I~f~~~ 387 (419)
T PRK04043 379 GGSIMFIKY 387 (419)
T ss_pred CCEEEEEEc
Confidence 776666554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-05 Score=77.84 Aligned_cols=185 Identities=15% Similarity=0.178 Sum_probs=119.8
Q ss_pred EEEEEEc-CCCeEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeCC--------CcEEE
Q 004410 391 VLDLSWS-KNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSID--------GKVRI 455 (755)
Q Consensus 391 V~~l~~s-~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~D--------g~V~i 455 (755)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5667777 677777666644 5566999987655553 345688999999 89988776644 56777
Q ss_pred EEcCCCeEEEeccCCcceEEEEEccCCCeEEE-EeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 456 wdl~~~~~~~~~~~~~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.. +++......-.....|+|+|+++.|++ -+..+.|..|++..... +........ ........-++++.. ++
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~g~pDG~~vD~-~G 195 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--FPGGPGYPDGLAVDS-DG 195 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBT-TS
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE--cCCCCcCCCcceEcC-CC
Confidence 8877 565554445566789999999998764 56678899999864322 211111110 111113478899998 88
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEe
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPS 584 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs 584 (755)
++.++....+.|.+++... ....... .. ...+++++|. ++.+.|+..+
T Consensus 196 ~l~va~~~~~~I~~~~p~G-~~~~~i~-~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDG-KLLREIE-LP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETTS-CEEEEEE--S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCCc-cEEEEEc-CC-CCCEEEEEEECCCCCEEEEEe
Confidence 8888888899999999773 3222221 22 3488999994 6766655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=93.38 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=149.1
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
...|+++.|...|.||++|...|.|.++.-....- -++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-cey----------------------------------------- 63 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEY----------------------------------------- 63 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc-cch-----------------------------------------
Confidence 46799999999999999999999999986432210 000
Q ss_pred ceEEEeCCcceeccCccceEecCC------------CCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEEEEEe--
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGH------------SSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVFS-- 426 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh------------~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~~~~~-- 426 (755)
+-..+|++| ...|..+.|..++ .++..+.|++|++|.+.......+-.
T Consensus 64 ---------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 64 ---------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred ---------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 001122222 2357788888765 78888999999999986553321111
Q ss_pred --------cCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 427 --------HNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 427 --------h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
..+++++..-. .+--.+ .|..|.. ....+....|...|.++.|..|...++++ .|=.|.+|
T Consensus 129 ls~~~~~~~~g~~~s~~~l-----~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLW 198 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKEL-----LLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLW 198 (460)
T ss_pred cccccccccCCCcCCHHHh-----hcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeeeec
Confidence 11222111000 000000 0111111 11122335677889999999998877774 47789999
Q ss_pred ECCCCeEeeeeeEEecc-cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-----eee-EEEe--------ee
Q 004410 498 DIKDNQLYQQNQICLQG-KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-----VGK-FKAS--------AF 562 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~-~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-----~~~-~~~~--------~~ 562 (755)
++.--..-..+. .+.. ....-..-|++..|+|.....++..+..|.|++-|++.. ..+ +... ..
T Consensus 199 nl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~ 277 (460)
T COG5170 199 NLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFE 277 (460)
T ss_pred cccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHH
Confidence 887432211110 0111 011112358889999988889999999999999997731 111 1100 01
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....|..+.|+++|+||++-+. -+|+|||++..+
T Consensus 278 eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 278 EIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred HHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 23457888999999999998765 489999998876
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-08 Score=105.01 Aligned_cols=197 Identities=19% Similarity=0.299 Sum_probs=135.5
Q ss_pred cccccccccceeeeeccCcceeecCC--CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-C
Q 004410 221 KRGWLKKLGAMARIIDRHGSATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-Q 297 (755)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~~~~~spd--g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~ 297 (755)
.+.|+.++.. -.+..+.|+|. ..+-++......-.||.+.+..... ..-.+.+|..+|+.+.|.|.. .
T Consensus 58 ppr~l~h~tp-----w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 58 PPRWLHHITP-----WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred CceeeeccCc-----chhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCc
Confidence 3456665542 22334556554 3455566667778889876543221 122478999999999999854 5
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
.||+++.|-.|..||+.+...
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~----------------------------------------------------------- 149 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHR----------------------------------------------------------- 149 (1081)
T ss_pred ceeeccccccceeeeccCCCc-----------------------------------------------------------
Confidence 899999999999999866432
Q ss_pred CccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
|+..+..-......++|+-.. .+++.+..+.|++||++.+. ++..+ +|...|+.++|+......+.+.+.||+|+
T Consensus 150 --p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 150 --PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 122222223344568888755 77778888999999998764 34444 38888999999876677899999999999
Q ss_pred EEEcCCCeE--EEeccCCcceEEEEEccCCCeEEE
Q 004410 455 IWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 455 iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
.||..+... ........+|..-+|.|-|...++
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEe
Confidence 999876432 244455667888888886654444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=80.42 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=123.7
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccCC----cc
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIR----EI 472 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~~----~~ 472 (755)
.++.+++++.++.|..||..+++.+..+.....+..... . .+..++.++.++.|+.+|..+++++.. .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-V-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE-E-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee-e-cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 455788888999999999999999888764333222222 2 456677777889999999999988743 2211 12
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC---CCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL---PGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~---~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
........++..++++..++.|..+|+.+++.+....... ..... ....+..-.... ++ .++++..++.+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEE
Confidence 2333344458899999999999999999999876543311 00000 001122222222 33 788888888644449
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+....... . ...+.. ....++..|+.++.++.|++||+.+++
T Consensus 190 ~~tg~~~w~~--~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSK--P--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEE--C--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCCEEEEe--c--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 8887755432 2 222222 245678888888899999999999987
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=93.42 Aligned_cols=103 Identities=20% Similarity=0.326 Sum_probs=88.1
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccC
Q 004410 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPD 481 (755)
Q Consensus 404 s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spd 481 (755)
..+....+.+|.+..+.+...++|-..++.++|+| |+++++++..|.+|||-.....-.+ ...+|+.-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 34555667778777788888899999999999999 9999999999999999998877766 35679999999999776
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
..|++|+.|++|++||+.+++.+.++
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCccccc
Confidence 45899999999999999999887543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.9e-06 Score=80.44 Aligned_cols=223 Identities=14% Similarity=0.091 Sum_probs=146.0
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
...+||.|+..|...+|...+....+. ....|...|.-+.=.-| .--+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----- 151 (344)
T ss_pred cccEEEeccccceeeeecccCccccee------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence 345889999999999999775442221 12223333332221111 234667788999999987544211
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC--CEEEEEEcCCC-e
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-F 401 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~ 401 (755)
+..|.. .+..+++++++ .
T Consensus 152 -----------------------------------------------------------~~~h~~~~~~ns~~~snd~~~ 172 (344)
T KOG4532|consen 152 -----------------------------------------------------------FAVHNQNLTQNSLHYSNDPSW 172 (344)
T ss_pred -----------------------------------------------------------ceeeccccceeeeEEcCCCce
Confidence 011222 26789999999 8
Q ss_pred EEEEeCCCcEEEEeCCCC--eEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE------EeccCCc
Q 004410 402 LLSSSADKTVRLWQVGID--RCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV------DYTDIRE 471 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~--~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~------~~~~~~~ 471 (755)
+++.+....|..|.+... ..+++. ...+.-.+..|+. ....||++..||++.|||++..... +...|.+
T Consensus 173 ~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 173 GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG 251 (344)
T ss_pred EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence 888899999999987643 333322 2455567788888 8889999999999999999864322 3456889
Q ss_pred ceEEEEEccCCC--eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 472 IVSAVCYCPDGK--GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 472 ~V~~v~~spdg~--~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.+..+.|++-|. +|+..-.-+.+++.|+++..-.+...+......+.....|.+-.|+. ++..+.+.+
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~-~n~s~~v~~ 321 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN-ENESNDVKN 321 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC-CCccccccc
Confidence 999999998653 55666667789999999988766554433332233334477777776 444444433
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-07 Score=92.32 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=163.6
Q ss_pred CCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCeeeeeee
Q 004410 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 245 pdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~~~~~~ 323 (755)
.-.+++.+++-||.++.|.-.. .........+.+|.+.|.+++.+.+|.+++|.+. |..++++|+.+-..+.-++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK 93 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK 93 (558)
T ss_pred ehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc
Confidence 3456888999999999997443 1222334557889999999999999999999887 9999999998877665555
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eE
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL 402 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L 402 (755)
....+..+.+....+ ..+..+. +....++.+.+++...-. ......-.-|..+|..+.+++.+ .+
T Consensus 94 L~~lPg~a~wv~skG-d~~s~IA-----------Vs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 94 LVDLPGFAEWVTSKG-DKISLIA-----------VSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred cccCCCceEEecCCC-CeeeeEE-----------eecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccce
Confidence 443333322222111 1111111 112223334444332211 12233345689999999999988 88
Q ss_pred EEEeCCCcEEEEeCCC------CeEEEEE----------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 403 LSSSADKTVRLWQVGI------DRCLRVF----------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 403 ~s~s~Dg~V~iWdl~s------~~~~~~~----------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
++....|.|.-|.... .+....+ +.....+++.|+| ++..+.+-+.|.+|++++..++++++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhh
Confidence 8888899999998773 1111111 2456789999999 999999999999999999998765432
Q ss_pred cc---------------------------------C-CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 467 TD---------------------------------I-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 467 ~~---------------------------------~-~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
.+ + ...-+.++|...|++|+-|+.=| |++.++.++....
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 11 0 01245678888999999887654 7888888887654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.6e-05 Score=74.93 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=129.6
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
++.+.+|++||.- .|..|.|...+..-.... ...+.-+.-.-.=.-++||||+.+||.+...|+|+|+|+.... +.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 5678899988865 456788876554321110 1111111112234568999999999999999999999986533 22
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN- 399 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~- 399 (755)
.+......+ ..-...|..|.|.+-
T Consensus 79 ~I~p~~~~~-------------------------------------------------------~d~~~Aiagl~Fl~~~ 103 (282)
T PF15492_consen 79 VIPPAMSFP-------------------------------------------------------GDLSDAIAGLIFLEYK 103 (282)
T ss_pred EcCcccccC-------------------------------------------------------CccccceeeeEeeccc
Confidence 222110000 000122222332211
Q ss_pred ------CeEEEEeCCCcEEEEeCC-----CCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCc-EEEEEcCCCeE
Q 004410 400 ------GFLLSSSADKTVRLWQVG-----IDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQV 463 (755)
Q Consensus 400 ------~~L~s~s~Dg~V~iWdl~-----s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~-V~iwdl~~~~~ 463 (755)
..|+....+|.++-|-+. ..+....|. +...|+++.++| ..++|++|+.... -..+.....-+
T Consensus 104 ~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GL 182 (282)
T PF15492_consen 104 KSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGL 182 (282)
T ss_pred cccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCc
Confidence 156677777777777653 223334443 577899999999 7777777664322 11111111111
Q ss_pred EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..|.-..+......+.. +...-.... +-.+|.+-+.+.. .........|..|..+| |+..|++...+
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~---~~~~~~~~~~~~f--------s~~~~~~d~i~kmSlSP-dg~~La~ih~s 250 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSK---RRGLLRIPSFKFF--------SRQGQEQDGIFKMSLSP-DGSLLACIHFS 250 (282)
T ss_pred eEEEEcCCCCcEEEccccCcccccccc---ccceeeccceeee--------eccccCCCceEEEEECC-CCCEEEEEEcC
Confidence 11111111111111100 001100111 1123333222211 11222456899999999 99999999999
Q ss_pred CcEEEEECCcceeeEEE
Q 004410 543 SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~ 559 (755)
|.|.+|++.....+...
T Consensus 251 G~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 251 GSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CeEEEEecCcchhhccc
Confidence 99999998876554443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.6e-07 Score=99.23 Aligned_cols=202 Identities=15% Similarity=0.240 Sum_probs=135.6
Q ss_pred EEEEEEcCCC---eEEEEeCCCcEEEEeCCC--CeEEE--EEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 391 VLDLSWSKNG---FLLSSSADKTVRLWQVGI--DRCLR--VFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 391 V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s--~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|-++.|++.. +-+.......-.+|++.. .+.+. ..+|...|+.+.|+|+....+++++.|-.|..||+++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4455666543 333333333445777642 22222 2369999999999999999999999999999999998543
Q ss_pred E--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 464 V--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 464 ~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
. .+..-....+.|+|+.....+++.+....|.+||++.+....- . .+.+...|+.+.|.......+++.+.
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~---s----~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC---S----LKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE---E----ecccceeeehHHHhhhhhhhhcccCC
Confidence 3 4555566778899998666666777788899999997764321 1 22266778888887766678999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC--EEEEEeCCCcEEEEEcCCCCcc
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK--HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~--~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|++|+.||........+.. .....+|...++.|-|. ++.---.+..|.+++.++...+
T Consensus 223 d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred CCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 9999999987644433322 23445777777877554 3333333345666666555433
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-05 Score=84.55 Aligned_cols=191 Identities=14% Similarity=0.107 Sum_probs=119.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE-
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC- 477 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~- 477 (755)
++.++.++.++.|..+|..+++.+........+.+.-.. .++.++.++.+|.|..||..+++.+...........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 347778888999999999999988776544444332222 34567778889999999999998764332222211110
Q ss_pred -Ecc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEECCcc
Q 004410 478 -YCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 478 -~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
-+| .+..++++..+|.+..+|+.+++.+........... .....+..+.-+| ..+..+++++.++.+..+|..+.
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC-CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 011 234778888899999999999987654322110000 0000000010011 02457888889999999999877
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
........ .....+. .++.+|+.++.||.|+.+|..+++
T Consensus 262 ~~~W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 262 RVLWKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred cEEEeecc----CCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 65554421 1111222 356788888999999999999886
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=82.96 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEcc-CCC
Q 004410 408 DKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCP-DGK 483 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~sp-dg~ 483 (755)
-+..++|+++..+.+..- .....|++++-+|...+++++|+.||.+-+||.+..... .+..|+..|..+-|+| ++.
T Consensus 158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred ccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 345666776544433222 234459999999977888899999999999999987544 4778999999999999 788
Q ss_pred eEEEEeCCCcEEEEECCC
Q 004410 484 GGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 484 ~la~gs~dg~I~iwD~~~ 501 (755)
.|++++.||.+..||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 999999999999999886
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-06 Score=82.24 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=60.6
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
|.+++-+|.. .+++|+.||.|-+||.+.......+ .|...|..+-|+|.++..|++++.||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8888888865 7888999999999999887443333 49999999999999999999999999999999876
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00037 Score=77.00 Aligned_cols=305 Identities=12% Similarity=0.055 Sum_probs=162.9
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccce--eeec-ccc-cEE-EEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLA-HEG-SIL-TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--~l~~-H~~-~V~-~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..+++++.++.+.-+|..++...... .... .+.. ... .+. .+.. ++..|+.++.+|.+..+|..+|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 456666667777777776655432221 1100 0000 000 000 1111 355677788899999999999998776
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC-----ccceEecCCCCCEEEEEE
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE-----KPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~gh~~~V~~l~~ 396 (755)
............. .....+....++.+..++....+... .+.....+...++.
T Consensus 146 ~~~~~~~~ssP~v------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---- 203 (394)
T PRK11138 146 TKVAGEALSRPVV------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---- 203 (394)
T ss_pred ccCCCceecCCEE------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----
Confidence 6543211000000 00011122233344444433221110 00001111112221
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCc--------EEEEEEee-CCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNY--------VTSVAFNP-VDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~--------V~~i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
. ++.++.++.++.+..+|..+++.+-.+..... ...+.-+| ..+..++.++.+|.+..+|+.+++.+-..
T Consensus 204 ~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 204 A-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred E-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 1 34566777889999999998887655431110 11111122 13456777788999999999999876332
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
.... ...+. ..+..|++++.+|.+..+|..+++.+..... + .........+ .+..|++++.+|.|.+
T Consensus 283 ~~~~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~------~~~~~~sp~v---~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 283 EYGS-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD-L------LHRLLTAPVL---YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCCC-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc-c------CCCcccCCEE---ECCEEEEEeCCCEEEE
Confidence 2221 11222 2567888889999999999999876543211 0 0111122222 2467888999999999
Q ss_pred EECCcceeeEEEeeeccCCceE-EEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 548 LCGENVVGKFKASAFRVAGSQM-FATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~-~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|..+.....+... ....+. ...+ .+..|+.++.||.|+.++.
T Consensus 350 ld~~tG~~~~~~~~--~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKV--DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEc--CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99888665554422 112222 2222 2457888999999998875
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-07 Score=104.87 Aligned_cols=199 Identities=17% Similarity=0.302 Sum_probs=142.0
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
+++++++..+....+|++|+-+.++|+.|+..|.|+++++..+..+- ....|..+|+-+.=+-||..+++.+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------SVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------cccccccccccccccCCcceeeeecc
Confidence 45556666666777889999999999999999999999988766543 35789999999999999988777654
Q ss_pred CC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 305 DG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 305 Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
-. ...+|+..+- ..+.+
T Consensus 1164 ~S~PlsaLW~~~s~-------------------------------------------------------------~~~~H 1182 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST-------------------------------------------------------------GGPRH 1182 (1516)
T ss_pred ccCchHHHhccccc-------------------------------------------------------------cCccc
Confidence 32 4678886431 12233
Q ss_pred EecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-e----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S----HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+|.+ -.++.|++.- .-+.|..-..+.|||++++..+.++ . .+..-++..|+| ++.+++- || .+|
T Consensus 1183 sf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIln---dG--vLW 1252 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLILN---DG--VLW 1252 (1516)
T ss_pred cccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEee---Cc--eee
Confidence 3332 2457777655 3344555567899999999887764 2 233347888999 7777663 44 579
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|++..+.+...+.-..-..-.|+|.|..+++-+ .|||+++.+++.
T Consensus 1253 DvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred eeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 999887664333333334457999999999866 589999988764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=90.43 Aligned_cols=183 Identities=13% Similarity=0.172 Sum_probs=139.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCC-cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNN-YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCY 478 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~ 478 (755)
.++.|+....+..+|+.+.+..+...-.. .|+-+.. +++++.+|...|+|.+-|..+.+.+ .+..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 67778888888899999998887775332 4665553 6789999999999999999999888 57788888876655
Q ss_pred ccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 479 CPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 479 spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
.|+.|++++.. .-|+|||++.-+.+...++.. .-.-+.|+|.-...+++++..|...+.|
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---------~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---------GPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---------CchhhhhcccccceEEEEecccceeecc
Confidence 78899888764 448999999887765443321 1245788998888999999999999999
Q ss_pred CC---cc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 550 GE---NV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 550 ~~---~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.. +. ...+.. ......+..++++++|+.++.|..+|.|.+|. .+.++.
T Consensus 295 ~~~lsNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~ 346 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQ 346 (1118)
T ss_pred ccccCCCccceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeec-CCCCCc
Confidence 43 32 222222 34455599999999999999999999999998 444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00019 Score=73.89 Aligned_cols=250 Identities=18% Similarity=0.245 Sum_probs=152.3
Q ss_pred ccCcceeecC-CCCeeEEeeCCCe-EEEEECCCCccc-ccccccceeeecccccEEEEEEecCCCEEEEEc-----CCCc
Q 004410 236 DRHGSATLKP-GDHELTLGQRMRR-VRVHPVKKQSRE-LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-----EDGT 307 (755)
Q Consensus 236 ~~~~~~~~sp-dg~~lasgs~dg~-V~Vw~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-----~Dg~ 307 (755)
.+...++.+| ....++.+-..|+ ..+||...+... .-.....+.|.||- .||+||++|+|.= ..|.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEE
Confidence 3445688999 5567777888775 568887765432 11223446677874 7999999999863 4589
Q ss_pred EEEEEcc-CCeeeeeeecCCCCCceeEEeeCCCCceeEEee-cCc-ceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 308 VRVWKVI-EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV-DKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 308 I~vWdv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|-|||+. +-+.+.++..+.-.+.-+.+.++....++.... ... ...+.+.-...-+..+...+.....+.++ ..+
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q--~~L 156 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ--VEL 156 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee--eec
Confidence 9999999 678888898888888888887776443333211 111 00111111112222333333333222222 123
Q ss_pred --cCCCCCEEEEEEcCCCeEEEEeC-CC-------cEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEE
Q 004410 385 --QGHSSEVLDLSWSKNGFLLSSSA-DK-------TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 385 --~gh~~~V~~l~~s~~~~L~s~s~-Dg-------~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~s 446 (755)
.-|...|..|++..+|.++.+.. .+ -|-+++. ++.+..+. ...+|-+|++++ ++.++++
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC-CCCEEEE
Confidence 44778899999999995555542 22 1334433 33233332 568999999999 7777654
Q ss_pred -EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 447 -gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
+=.-+.+.+||..+++++......+ +..++-.+++ +++.+..|.+.....
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLSP 284 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEccC
Confidence 4566789999999999886554433 4455555555 555555666444433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00047 Score=70.76 Aligned_cols=219 Identities=16% Similarity=0.164 Sum_probs=139.6
Q ss_pred eeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe-cCCCEEEEEcCCCcEEEEEccCCee
Q 004410 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs-pdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..|.+ ++.++++-...+.|..|+........ +. . .....+++. +++.++++ ..+ .+.++|..+++.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------~~-~-~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------ID-L-PGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------EE-S-SSEEEEEEECTTSEEEEE-ETT-CEEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------Ee-c-CCCceEEEEccCCEEEEE-EcC-ceEEEecCCCcE
Confidence 67887 66677777778999999977654322 11 1 126777887 67655554 444 456668877753
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEEc
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSWS 397 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~s 397 (755)
....... ... .....+++++.
T Consensus 73 ~~~~~~~----------------------------------------------------------~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 73 TVLADLP----------------------------------------------------------DGGVPFNRPNDVAVD 94 (246)
T ss_dssp EEEEEEE----------------------------------------------------------TTCSCTEEEEEEEE-
T ss_pred EEEeecc----------------------------------------------------------CCCcccCCCceEEEc
Confidence 2211100 011 23457889999
Q ss_pred CCCe-EEEEeCC--------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcCC--CeEE-
Q 004410 398 KNGF-LLSSSAD--------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVRR--CQVV- 464 (755)
Q Consensus 398 ~~~~-L~s~s~D--------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~~--~~~~- 464 (755)
++|. .++.... +.|..++.. ++.......-...+.|+|+| +++.|+ +-+..+.|..+++.. ..+.
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceee
Confidence 9994 4443322 457778877 66666666667789999999 887654 667788899999863 2111
Q ss_pred -----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 465 -----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 465 -----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.........-.+++..+|++.++....+.|.++|.. ++++..... ....+++++|...+...|+++
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--------PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---------SSSSEEEEEEESTTSSEEEEE
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--------CCCCEEEEEEECCCCCEEEEE
Confidence 122222347889999999988888889999999998 666544332 234789999953255555554
Q ss_pred E
Q 004410 540 S 540 (755)
Q Consensus 540 s 540 (755)
+
T Consensus 244 t 244 (246)
T PF08450_consen 244 T 244 (246)
T ss_dssp E
T ss_pred e
Confidence 4
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.4e-07 Score=62.70 Aligned_cols=36 Identities=47% Similarity=0.860 Sum_probs=34.1
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+++.+|.+.|++|+|+|++++|++++.|+.|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=78.13 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=166.3
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
=+-+.|||-|.||+|--.-| |.+|-=.+-..++.+.. ..+..+.|+++..-. +.......... ........+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYL-VT~s~~p~~~~----~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYL-VTYSPEPIIVE----EDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceE-EEecCCccccC----cccCCCceE
Confidence 45689999999999987765 88997655555554432 234444555543221 11111111000 012344567
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEE
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l 444 (755)
.+|+.....+... ...+.+....-.-..||.|+ ++|.... ..|.||+..+..++-.-. .-..|....|+| .+++|
T Consensus 285 ~IWDI~tG~lkrs-F~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~ll 361 (698)
T KOG2314|consen 285 IIWDIATGLLKRS-FPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLL 361 (698)
T ss_pred EEEEccccchhcc-eeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC-CcceE
Confidence 7777765443211 11111121222346799999 6665554 679999877643332221 456788999999 77777
Q ss_pred EEEeC-----CCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeee
Q 004410 445 ISGSI-----DGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 445 ~sgs~-----Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~ 508 (755)
|-=.. -..+.+..+.+++.+.... ++-.-..+-|..+|.+|++-.. -..+.|+.++.......
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve- 440 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE- 440 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-
Confidence 75432 2357777888777664332 2223344677788888876322 11244555554332211
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEE-EEC--CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSA--DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS- 584 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs- 584 (755)
...-...|..++|-| .+..+++ .+. ..++.+|..............-.....+.+.|+|.|++++.+.
T Consensus 441 -------~velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 441 -------VVELKESVIAFAWEP-HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred -------eeecchheeeeeecc-CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence 011235788999999 5554444 433 3578888776433332221111224567899999999998764
Q ss_pred --CCCcEEEEEcCC
Q 004410 585 --EDSNIYIWNYSN 596 (755)
Q Consensus 585 --~Dg~I~iWd~~~ 596 (755)
..|.+.++|+..
T Consensus 513 ~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDY 526 (698)
T ss_pred cccccceEEEecch
Confidence 568899999885
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=85.68 Aligned_cols=140 Identities=12% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
..++|.++.|...+ .+..|...|.|...|++.+ .+...+-|...|++++....++.+|++.+.+|+|.+||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 56788899999866 8889999999999999854 66777789999999998876889999999999999999996
Q ss_pred CeE---E-EeccCCcceEE--EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 461 CQV---V-DYTDIREIVSA--VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 461 ~~~---~-~~~~~~~~V~~--v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
-++ + ++.+|-..-.- +-..+....+++++.|-..+||.++.+++..+.+.. .......+..++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~----~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP----YSASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC----Cccccccccceehhc
Confidence 555 3 55665443222 334455567788999999999999999998764432 222333555566543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-05 Score=86.45 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=131.1
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.+.|.|++++ +++|+-|+.+|.|++.+....-
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---------------------------------------------- 70 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---------------------------------------------- 70 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc----------------------------------------------
Confidence 4578888886 7799999999999999864321
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC---
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--- 439 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~--- 439 (755)
.+...|... ..+| ++++|+.||+|.|-.+-+.+....+....++.+|+++|.
T Consensus 71 ------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~ 126 (846)
T KOG2066|consen 71 ------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSR 126 (846)
T ss_pred ------------------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhh
Confidence 111223322 4456 999999999999999999999888988999999999992
Q ss_pred -CCCEEEEEeCCCcEEEEEcC---CCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 440 -DDNYFISGSIDGKVRIWEVR---RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 440 -d~~~l~sgs~Dg~V~iwdl~---~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
..+.|++|+.-| +.++.-. ....+......+.|.+++| .|+++|-+..+| |+|||+.+.+.+...+....
T Consensus 127 ~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~-- 200 (846)
T KOG2066|consen 127 QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ-- 200 (846)
T ss_pred hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCC--
Confidence 256799999888 7777643 2233345667789999999 677888877665 89999998887654432211
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
......--..+.|.+ + ..|+ -+...+|+|..+.
T Consensus 201 ~~R~e~fpphl~W~~-~-~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQD-E-DRLV-IGWGDSVKICSIK 233 (846)
T ss_pred CCCcccCCCceEecC-C-CeEE-EecCCeEEEEEEe
Confidence 111222345677876 2 3333 3455567776655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=83.43 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=154.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.+.++.|..++..+..+...|.|.+-+......+.. ---.+.|.+++||||+++|+..+.++++.+-.- +
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--------GNVDNGISAASWSPDEELLALITGRQTLLFMTK-D 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee--------eeccCceEEEeecCCCcEEEEEeCCcEEEEEec-c
Confidence 5667788999999999999999999987655443322 124578999999999999999998888776532 2
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
...+.+..... +. ...+....+-
T Consensus 140 f~~i~E~~L~~---------------------d~------------------------------------~~~sk~v~VG 162 (1265)
T KOG1920|consen 140 FEPIAEKPLDA---------------------DD------------------------------------ERKSKFVNVG 162 (1265)
T ss_pred ccchhcccccc---------------------cc------------------------------------ccccccceec
Confidence 22111111000 00 0000111111
Q ss_pred EcCCCeEEEEeCCCcEEEEeCC-CCeEEEEEecCCcEEEEEEeeCCCCEEEEEe----CC-CcEEEEEcCCCeEE-Eecc
Q 004410 396 WSKNGFLLSSSADKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYFISGS----ID-GKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs----~D-g~V~iwdl~~~~~~-~~~~ 468 (755)
|-....-+-|+. |....-+.. ..+.+......+.=+.|.|-- ||.+|++.. .+ .+|+|||-+ +.+- .-..
T Consensus 163 wGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~ 239 (1265)
T KOG1920|consen 163 WGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP 239 (1265)
T ss_pred ccccceeeecch-hhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCc
Confidence 211110011110 000000000 000000001222235678876 888888832 23 789999988 4332 2222
Q ss_pred CCcceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE---EECC
Q 004410 469 IREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV---TSAD 542 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s---~s~D 542 (755)
....-.+++|-|.|..+++-. .++.|.+|.-++-..- .+.+ ........+..++|+. ++..|++ ....
T Consensus 240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~f~l----~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~ 313 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-EFVL----PFPLDEKEVEELAWNS-NSDILAVVTSNLEN 313 (1265)
T ss_pred ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-cccc----CCcccccchheeeecC-CCCceeeeeccccc
Confidence 334457899999999988843 4567888876543211 1111 1222334599999998 7888877 4555
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~ 594 (755)
..|++|-..+...-++....-..... +.|+|.-. .|..-..+|.+.++++
T Consensus 314 ~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 314 SLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 66999998886555544322222222 66776432 2333335666555554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00084 Score=69.17 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=145.4
Q ss_pred EEEEEec-CCCEEEEEcCCCc-EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 288 LTMKFSL-DGQYLASGGEDGT-VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 288 ~~l~fsp-dg~~LaSgs~Dg~-I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
..++.+| ++..++.+-.-|+ ..+||..+++....+..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------------------------- 46 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------------------------- 46 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------------------------------------
Confidence 3577888 5667777777765 67899988876554432
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-----CCCcEEEEeCC-CCeEEEEEe-cCCcEEEEEEe
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-----ADKTVRLWQVG-IDRCLRVFS-HNNYVTSVAFN 437 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-----~Dg~V~iWdl~-s~~~~~~~~-h~~~V~~i~fs 437 (755)
.+-+.|.|| -.|++|| +|++.- ..|.|-|||+. +-+.+..+. +.-.-..+.+.
T Consensus 47 -------------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 47 -------------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred -------------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 223567888 6899999 666543 34889999998 566666664 55556678889
Q ss_pred eCCCCEEEEEe------------------CCCcEEEEEcCCCeEEE---e--ccCCcceEEEEEccCCCeEEEEeCCCc-
Q 004410 438 PVDDNYFISGS------------------IDGKVRIWEVRRCQVVD---Y--TDIREIVSAVCYCPDGKGGIVGTMTGN- 493 (755)
Q Consensus 438 p~d~~~l~sgs------------------~Dg~V~iwdl~~~~~~~---~--~~~~~~V~~v~~spdg~~la~gs~dg~- 493 (755)
| |+..|+++. .+-.|...|..+++++. + ..++..|..+++.++|..++..-..|.
T Consensus 108 p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 108 P-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred C-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence 9 886666653 12356667778888773 3 346778999999999877766555443
Q ss_pred ------EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEECCcceeeEEEeeeccCC
Q 004410 494 ------CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLCGENVVGKFKASAFRVAG 566 (755)
Q Consensus 494 ------I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 566 (755)
|.+++.... ....... ......-...|-+|++++ ++.+++++ -..+.+.+||..+....-.. .-.
T Consensus 187 ~~~~PLva~~~~g~~--~~~~~~p-~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~----~l~ 258 (305)
T PF07433_consen 187 GDAPPLVALHRRGGA--LRLLPAP-EEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSV----PLP 258 (305)
T ss_pred CccCCeEEEEcCCCc--ceeccCC-hHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecc----ccC
Confidence 333333221 1111110 001122346789999999 66666554 46788999998875433322 223
Q ss_pred ceEEEEEecCCCEEEEEeC
Q 004410 567 SQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 567 ~v~~l~fspdg~~L~sgs~ 585 (755)
-+..++-.+++ ++++.+.
T Consensus 259 D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 259 DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceeeeeecCCc-eEEeCCC
Confidence 45566666666 6665554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.6e-06 Score=84.73 Aligned_cols=205 Identities=14% Similarity=0.158 Sum_probs=146.3
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe---EEEEE-ecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCC
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~---~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~ 460 (755)
-|...|+.+.-....++++++.||.++.|.-..-. .++.+ .|...|.+++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 47888888887777799999999999999754322 22222 3888899999987 9999999777 99999999987
Q ss_pred CeEEEeccCCcceEEEEEcc-CC---CeEEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 461 CQVVDYTDIREIVSAVCYCP-DG---KGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~sp-dg---~~la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
-..+...........++|.. .| ..|++ .-.+|.+.++|-....... .-....|..+|..+.+.| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 66553222222222223322 22 13333 3457889999987654321 112456889999999999 7778
Q ss_pred EEEEECCCcEEEEECCcceeeE-------------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKF-------------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~-------------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++....|.|.-|......+.. ............++.|+|+|..+.+-+.|..|+++++.+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 8888888999999877311110 01112345677899999999999999999999999999987
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-06 Score=84.21 Aligned_cols=147 Identities=11% Similarity=0.110 Sum_probs=109.9
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++.+.+-.|-+-|+.++....+. ....|.++.|...++++..|+.+|.|..+|++.+..-.. ...+.-.|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 55666788999999988665544 678899999999999999999999999999997621110 0111234778899
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCccee---eEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVG---KFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++....++.+|++.+.+|+|.+||.+-.+. .... .+|.. .-.-+-..+....|++++.|...+||.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY--eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY--EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeee--ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 9888776789999999999999999876554 2222 23322 22223446677899999999999999999876
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.7e-06 Score=57.72 Aligned_cols=37 Identities=46% Similarity=0.934 Sum_probs=34.5
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEe
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 415 (755)
+++.++.+|.+.|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3577899999999999999998 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0025 Score=70.42 Aligned_cols=275 Identities=13% Similarity=0.095 Sum_probs=150.3
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCccee
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (755)
+..|++++.+|.|.-+|..+|+.+.......... .+.......+. ..........+.+..++.+..++....+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~~~~~~~~~~----~~~~v~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG---WFSKNKSALLS----GGVTVAGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc---ccccccccccc----cccEEECCEEEEEcCCCEEEEEECCCCC
Confidence 5567777788888889988888777665433110 00000000000 0000011112233344555555544322
Q ss_pred ccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEE--EEeeC-CCCEEEEEeCCCc
Q 004410 376 LLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV--AFNPV-DDNYFISGSIDGK 452 (755)
Q Consensus 376 ~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i--~fsp~-d~~~l~sgs~Dg~ 452 (755)
+ +.+.... +.+.+--...++.++.+..++.|..+|..+++.+-.+........+ .-+|. .+..++.++.+|.
T Consensus 142 ~----~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~ 216 (394)
T PRK11138 142 V----AWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGR 216 (394)
T ss_pred C----cccccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCE
Confidence 2 2221111 1111110111457777888999999999999988776532211100 00110 2345677788999
Q ss_pred EEEEEcCCCeEEEeccCCc--------ceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 453 VRIWEVRRCQVVDYTDIRE--------IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 453 V~iwdl~~~~~~~~~~~~~--------~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+..+|..+++.+....... ....+..+| .+..+++++.+|.+..+|+.+++.+..... . .
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~--------~ 286 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--G--------S 286 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--C--------C
Confidence 9999999887652211100 011112233 355777788899999999999987654221 0 1
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+.. .+..|++++.++.+..+|..+............ ....+..+ .+.+|+.++.||.|++.|..+++
T Consensus 287 ~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 287 VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 111222 446788888999999999887655443311111 11122222 25678889999999999999887
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00052 Score=80.41 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=139.1
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-------
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------- 459 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~------- 459 (755)
...|.++.|..+. .++.+..+|.|.+-|..+......-.-...|.+++|+| |+..++..+.+++|.+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999888 88888899999999988877665555788899999999 99999999888888775431
Q ss_pred --------CCeEE---------Eecc---------------------CCcceEEEEEccCCCeEEE-----EeCCCcEEE
Q 004410 460 --------RCQVV---------DYTD---------------------IREIVSAVCYCPDGKGGIV-----GTMTGNCRF 496 (755)
Q Consensus 460 --------~~~~~---------~~~~---------------------~~~~V~~v~~spdg~~la~-----gs~dg~I~i 496 (755)
.++.+ ++.+ ....=+.|+|.-||+++|+ ......|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 01111 1110 1122346999999999998 333368999
Q ss_pred EECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECCccee-eEEEeeeccCCceEEEE
Q 004410 497 YDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGENVVG-KFKASAFRVAGSQMFAT 572 (755)
Q Consensus 497 wD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~ 572 (755)
||-. +.+... .......-.+++|-| .+.++++.. .|+.|.++.-+.... .+..........+..++
T Consensus 227 ~drE-g~Lns~--------se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 227 YDRE-GALNST--------SEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eccc-chhhcc--------cCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 9988 544321 111233446789999 778877753 466788988655332 22222222334489999
Q ss_pred EecCCCEEEE---EeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVS---PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~s---gs~Dg~I~iWd~~~~~ 598 (755)
|+.++..|++ ......|++|-+.+-.
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCeE
Confidence 9999999988 5555569999987743
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.001 Score=67.61 Aligned_cols=183 Identities=17% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeE
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVA--FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~--fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+++|..||..+++.+-.......+.... ..+ ++..+++++.++.|..||..+++.+........+...- ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6889999999999998886422222222 223 56777778899999999999998874333333322211 2356677
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA 565 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 565 (755)
++++.++.|+.+|+.+++.......... .... ......... .+..++++..++.|..+|..+.............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSS---PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SS---CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeeccccc---cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 8888889999999999998765221110 0011 111222222 3678888888999999999988776666432211
Q ss_pred C--------ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 566 G--------SQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 566 ~--------~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
. .+..-....++ .++.++.++.+..+|+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 1 11222222344 77778888864444999887
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00031 Score=72.91 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=71.7
Q ss_pred ceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
..-+.+|...|.+++|+|.. .+..++.+.+|+|.|+++..+...+.....+.+++|.-++.++++.|-..|.|.|||+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 33556788899999999976 7889999999999999999999998766999999999877788999999999999999
Q ss_pred CCC
Q 004410 459 RRC 461 (755)
Q Consensus 459 ~~~ 461 (755)
+..
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 853
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.9e-05 Score=83.54 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=132.4
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecC
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQ 325 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~ 325 (755)
++..++.|+--..+..+|..+... .+...-..+.|.-|+. ++++|.+|...|+|.+-|..+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~------- 209 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET------- 209 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce-------
Confidence 455677777777777778664331 1122222334666665 689999999999999999876543
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~ 405 (755)
++++..|.+.|.++...-+ .|+++
T Consensus 210 -------------------------------------------------------iht~~aHs~siSDfDv~GN-lLitC 233 (1118)
T KOG1275|consen 210 -------------------------------------------------------IHTFDAHSGSISDFDVQGN-LLITC 233 (1118)
T ss_pred -------------------------------------------------------eeeeeccccceeeeeccCC-eEEEe
Confidence 5667788888888766532 67776
Q ss_pred e---------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CCC--eEEEeccCCc
Q 004410 406 S---------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RRC--QVVDYTDIRE 471 (755)
Q Consensus 406 s---------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~~--~~~~~~~~~~ 471 (755)
+ .|..|+|||++..+.+.-++......-+.|+|.-...+++++..|...+-|. ... ..........
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 5 4677999999988877776644444677889977778999999999999983 332 2223444555
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
.+.+++++++|+.++.|..+|.|.+|-
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeec
Confidence 699999999999999999999999997
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00044 Score=77.59 Aligned_cols=106 Identities=20% Similarity=0.351 Sum_probs=78.9
Q ss_pred eeecCCCCeeEEee----CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 241 ATLKPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 241 ~~~spdg~~lasgs----~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+|+|...++|.++ ..|.|.||--...... . -++.-| +++++|+|..-.||.|-+-|.+.||...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr-~-----Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQR-D-----VTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCc-c-----ccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 68999999998775 4688999853322110 0 011122 556999999999999999999999987654
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.. .....|..+|..+.|
T Consensus 92 e~h--------------------------------------------------------------tv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 92 ETH--------------------------------------------------------------TVVETHPAPIQGLDW 109 (1416)
T ss_pred eee--------------------------------------------------------------eeccCCCCCceeEEe
Confidence 421 112358999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCC
Q 004410 397 SKNG-FLLSSSADKTVRLWQVG 417 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~ 417 (755)
+++| .|+++..-|.|.+|...
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEee
Confidence 9999 99999999999999765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.7e-06 Score=92.55 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=137.0
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCC--cEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDG--KVR 454 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~ 454 (755)
++...|..|....+|++|+-+. +|+.|+..|.|+++++.+|....... |...|+-+.-+. ++..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 4566788899999999999877 99999999999999999998887775 999999999887 777766654433 467
Q ss_pred EEEcCC-CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRR-CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~-~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+|++.. +.... .-..-.++.|+..-+.-++|+......+||+.++....+..... ......-+...|+| ..
T Consensus 1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~----~~~~y~~n~a~FsP-~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT----VTSSYSNNLAHFSP-CD 1242 (1516)
T ss_pred HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc----hhhhhhccccccCC-Cc
Confidence 899865 12221 12234678888876677788888889999999998765422111 11122236778999 55
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+|+ .|| .+||.+......++ .... .-..-.|+|.|..++.-++ |||+.+-+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~F--D~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRF--DQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhh--hhhe-ecccccccCCCceEEeech-----hhhhHHHH
Confidence 5554 233 46887654222221 1111 1223469999999988776 89998865
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.011 Score=61.77 Aligned_cols=272 Identities=12% Similarity=0.096 Sum_probs=155.1
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEEEEEccCCeeeeeeecCC
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
++|.|.|..++.. +- +.-. +-.-.+..+||++.++++. ..-.|.+||..+-....++..+.
T Consensus 17 ~rv~viD~d~~k~-lG-----mi~~---g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKL-LG-----MIDT---GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEE-EE-----EEEE---ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCcE-EE-----Eeec---ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 4788888665431 11 1111 2222366899999888753 34479999999988777665443
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE-
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS- 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s- 404 (755)
.+-. . . ......++++.++ +++.
T Consensus 88 k~R~----------------------------------------------------~-~--~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KPRA----------------------------------------------------Q-V--VPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-B-------------------------------------------------------B--S--GGGEEE-TTSSEEEEE
T ss_pred cchh----------------------------------------------------e-e--cccccceEEccCCcEEEEE
Confidence 2100 0 0 0011124556666 3333
Q ss_pred -EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEE-----eccCCcc-eEEE
Q 004410 405 -SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVD-----YTDIREI-VSAV 476 (755)
Q Consensus 405 -~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~-----~~~~~~~-V~~v 476 (755)
.+--..|.|-|+..++.+..+.-.+- ...-|...+-|.+-+.||.+.-..+. .++... +....++ +..-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCCE---EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 23345688889999999888865542 23334345678899999999999887 444431 1112222 2334
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCCCCCEEEEEE--C-----CC--
Q 004410 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPSDPSKVIVTS--A-----DS-- 543 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~d~~~l~s~s--~-----Dg-- 543 (755)
++...+..++--+.+|.|+-.|+..........+.+.... ....+...-+++++..+.+++... . |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 4555555666679999999999988775544444332111 011123344677773444333321 1 12
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
.|.++|..+.+...+..+ ...+.++..+.+.+ +|++.+ .++.|.+||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 366777777666666532 23577899999877 565544 57999999999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0017 Score=73.70 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=131.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccccc-EEEEEEecCCCEEEEEcCCCc-----EEEEEcc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGT-----VRVWKVI 314 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fspdg~~LaSgs~Dg~-----I~vWdv~ 314 (755)
-++++.+..+|.|+.+|.|.+.+-. +...+.+++|... |..+....+..+|++.++|+. |+||+++
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s--------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS--------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc--------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 5688999999999999998887732 2233557778777 444444434478999888765 8999986
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
.-+. ...+.++.. ..+++. .+.....++..+
T Consensus 101 k~~~-------n~sP~c~~~-------------------------------~ri~~~-----------~np~~~~p~s~l 131 (933)
T KOG2114|consen 101 KVDK-------NNSPQCLYE-------------------------------HRIFTI-----------KNPTNPSPASSL 131 (933)
T ss_pred ccCC-------CCCcceeee-------------------------------eeeecc-----------CCCCCCCcceEE
Confidence 5421 000111100 000000 011134567888
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeC--CCCeEEE-EE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--EEEe
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQV--GIDRCLR-VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ--VVDY 466 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl--~s~~~~~-~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~--~~~~ 466 (755)
+.+.+- .+++|-.+|.|..+.- ...+-.+ .+ ....+||.+++.. ++..++-...-..|.+|.+.... ....
T Consensus 132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCCCcceeee
Confidence 888877 8888999999999842 2111111 12 3678999999987 77663333345678999988555 2235
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..+...+.|..+++....+++++ ..-+.+||.......
T Consensus 211 d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC 248 (933)
T ss_pred ccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence 66777888988888655566654 457999998865543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-06 Score=89.02 Aligned_cols=190 Identities=19% Similarity=0.393 Sum_probs=124.6
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEc----CCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG----EDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs----~Dg~I~vWdv~~~~~~~~ 321 (755)
..+++.|..+|.|-+-..+..... ......+|....++++|++ |.+.||.|- .|..+.|||+.++-..
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-- 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-- 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC--
Confidence 358899999999999876543221 1122456888999999998 667888763 3567999998765210
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-CCCCCEEEEEEcCCC
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ-GHSSEVLDLSWSKNG 400 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~s~~~ 400 (755)
+.. .+ .|. +-......++|-.+.
T Consensus 143 ---Pke---------------------------------------------------~~--~fs~~~l~gqns~cwlrd~ 166 (783)
T KOG1008|consen 143 ---PKE---------------------------------------------------SP--LFSSSTLDGQNSVCWLRDT 166 (783)
T ss_pred ---Ccc---------------------------------------------------cc--ccccccccCccccccccCc
Confidence 000 00 000 122234478888777
Q ss_pred -eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc-CCCe-EEE-----eccCCcc
Q 004410 401 -FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-RRCQ-VVD-----YTDIREI 472 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl-~~~~-~~~-----~~~~~~~ 472 (755)
.+++|...+.|+++|++........-.+..+..+.+.|-.++++++-. ||.|-+||. +.-+ .+. .......
T Consensus 167 klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~ 245 (783)
T KOG1008|consen 167 KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQ 245 (783)
T ss_pred chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccc
Confidence 778888888999999975433333335567888889997888888766 999999993 3322 111 1122335
Q ss_pred eEEEEEccC--CCeEEEEeCCCcEEEEECC
Q 004410 473 VSAVCYCPD--GKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 473 V~~v~~spd--g~~la~gs~dg~I~iwD~~ 500 (755)
+..++|+|. |...+..-..++|++||+.
T Consensus 246 l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 246 LFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999994 3333334456789999986
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.006 Score=66.59 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=141.8
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee-eeecCCCCCceeEEe-eCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD-GFDVQDTDPSCLYFT-INHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
.|+.|.|+++..-||.|...|.|.||.+...+... .......+.....+. .+....+.. .... .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d--i~~r-----------~~ 69 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTD--ISDR-----------AP 69 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE---GGG-------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEE--ehhh-----------CC
Confidence 58899999998899999999999999886654321 000000000000000 000001100 0000 00
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---------cCCcEEEE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSV 434 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---------h~~~V~~i 434 (755)
+. ....-.|..-+....++|++++.+.-|+++.|..+|.+.|.|++....+..-. ....|+++
T Consensus 70 -------~~-~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 70 -------PS-LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp -------TT--SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred -------cc-cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 00 00001244455666899999999988899999999999999999888877642 34578999
Q ss_pred EEee----CCC---CEEEEEeCCCcEEEEEcC--C-C-e---EEEec-cCCcceEEEE-EccC-----------------
Q 004410 435 AFNP----VDD---NYFISGSIDGKVRIWEVR--R-C-Q---VVDYT-DIREIVSAVC-YCPD----------------- 481 (755)
Q Consensus 435 ~fsp----~d~---~~l~sgs~Dg~V~iwdl~--~-~-~---~~~~~-~~~~~V~~v~-~spd----------------- 481 (755)
.|.- .|+ -++++|...|.+.+|.+. . + - ..... .+...|..|. ++.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 8873 122 368899999999999875 1 1 1 11222 4455555554 3211
Q ss_pred ---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc----CCCCCEEEEEECCCcEEEEECCcce
Q 004410 482 ---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS----PSDPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 482 ---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs----p~d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
-..+++...+..++++...+.+...... ........+.+. -..+..|++-..+|.|+++.+..+.
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 1235556668889999998776543211 011122233342 1145677888899999999998876
Q ss_pred eeEEEeeec--cCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 555 GKFKASAFR--VAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 555 ~~~~~~~~~--~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......... ....+...+++++|+.++-.+.. .+.++.+
T Consensus 294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred HhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 655543221 11234456778888876665443 4444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=80.93 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=121.8
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
..+.++|++++ +.+|+-|+.+|.|++++..... .....|... .-+|.++++|+.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45677888875 5899999999999999987654 333333332 5689999999999999999888777654
Q ss_pred eeeEEecccccCCCCCeEEEEEcCC----CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPS----DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~----d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
... -..++..++++|+ ..+.+++|+.-| +.++.-.=...+-........++|.+++|. |.+||-
T Consensus 108 ~~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW 175 (846)
T KOG2066|consen 108 QYD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW 175 (846)
T ss_pred eEe---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE
Confidence 322 2357899999994 356889999888 777653322222222235677899999995 778888
Q ss_pred EeCCCcEEEEEcCCCCcccCCCcc---c----cceeeeecCCeEEEEcCCCC
Q 004410 583 PSEDSNIYIWNYSNQDKSSSRSKS---I----WSCESFLSHNVSVAIPWVGL 627 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~~~~~~~~~~---~----~~~~~f~~~~~~va~~w~g~ 627 (755)
++.+ .|+|||+...+....-... + -.|..+-.....+.|-|...
T Consensus 176 and~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 176 ANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred ecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 8766 5899999988743322111 1 13333333467778888654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=79.46 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=59.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.+++|+|..-.||.|..-|.+.||..+... ..++ ...|..+|..+.||++|..|+|+..-|.|.+|...-
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--~htv-----~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--THTV-----VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce--eeee-----ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 4458999999999999999999999866433 2222 345999999999999999999999999999998864
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.013 Score=66.60 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=103.5
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-C--------------------cE-EEEEEeeCCCCEEEEEeCCC-------------
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHN-N--------------------YV-TSVAFNPVDDNYFISGSIDG------------- 451 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~-~--------------------~V-~~i~fsp~d~~~l~sgs~Dg------------- 451 (755)
.++.|..+|..+++.+-.+... . .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4677888888888877665421 0 01 1234444 466777777665
Q ss_pred -----cEEEEEcCCCeEEEeccC-Ccce------EEEEEc----cCCC---eEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 452 -----KVRIWEVRRCQVVDYTDI-REIV------SAVCYC----PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 452 -----~V~iwdl~~~~~~~~~~~-~~~V------~~v~~s----pdg~---~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.|.-+|+.+++.+-.... .... ....+. -+|. .+++++.+|.+..+|..+++.+.......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 799999999988732211 1100 001111 1343 57888999999999999999887544321
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEE------------------ECCCcEEEEECCcceeeEEEeeeccC------Cce
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVT------------------SADSLVRVLCGENVVGKFKASAFRVA------GSQ 568 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~------------------s~Dg~I~iwd~~~~~~~~~~~~~~~~------~~v 568 (755)
. .+...| ..++++ ..+|.+.-+|..+...........+. .+.
T Consensus 332 ~-----------~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 Q-----------PMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred c-----------ccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 1 112222 222221 23566777777766655554322110 111
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 569 MFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 569 ~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
..-.....+.+|+.++.||.|+.+|..+|+.
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 1111123567899999999999999999983
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=71.85 Aligned_cols=90 Identities=17% Similarity=0.337 Sum_probs=72.7
Q ss_pred EEEeCCCCeEE----EEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE
Q 004410 412 RLWQVGIDRCL----RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 412 ~iWdl~s~~~~----~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~ 487 (755)
++|++..++.. ..+.....|.|.+++| +...|+.|+.||.|.+||...+... .....-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEE
Confidence 45666554432 2235888999999999 9999999999999999999776433 3455567899999999999999
Q ss_pred EeCCCcEEEEECCCCe
Q 004410 488 GTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~ 503 (755)
|+..|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 9999999999987543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0045 Score=62.86 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=116.3
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+.+-...+..|+|.|+. .+++....+.|..++. .|+.++.+. ..+..-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 344556679999999975 5566667788888886 477887775 345678888875 6666665556899999988
Q ss_pred CCC----eE---E--E--ec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC---CeEee-eeeEEecccccCCCCC
Q 004410 459 RRC----QV---V--D--YT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD---NQLYQ-QNQICLQGKKKLPGKR 522 (755)
Q Consensus 459 ~~~----~~---~--~--~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~---~~~~~-~~~~~~~~~~~~~~~~ 522 (755)
... .. . . .. .....+-.++|+|.++.|+++-...-..+|.+.. ..... .....+.. .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceecc
Confidence 431 11 1 1 11 2345689999999988888888777777777664 11111 10000111 2234556
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc------CCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV------AGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
+.+++++|..+.+++.......|.++|.............+. -...-.++|.++|++.+ .++-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 899999998778888888888898998554322222211111 12457899999996554 4466666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0019 Score=71.83 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=121.4
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
-+++..+++++.|+.-|.+++|+-..+..... ...+-.+.+..+..|++..++|.|+..|.|.|+.++.....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~- 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR- 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcc------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-
Confidence 45677899999999999999999665443221 12234566777788999999999999999999988663211
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
..+++++. -..|...|++++|++++
T Consensus 112 ---------~~~~~t~~----------------------------------------------d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 112 ---------DLDYVTPC----------------------------------------------DKSHKCRVTALEWSKNG 136 (726)
T ss_pred ---------cceeeccc----------------------------------------------cccCCceEEEEEecccc
Confidence 11111111 12388999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--eccCCc-
Q 004410 401 -FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--YTDIRE- 471 (755)
Q Consensus 401 -~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~- 471 (755)
.+.+|...|+|.+-.+.+. .....+.....|..|... +..+|++..... .+++.+...+.+ ....++
T Consensus 137 ~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~ 212 (726)
T KOG3621|consen 137 MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSL 212 (726)
T ss_pred cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhh--heeecchhHHHHhcCCCcCCc
Confidence 9999999999999888762 112223356777777765 344555544332 334444332221 111111
Q ss_pred ceEEEEEccC----CCeEEEEeCCCcEEEEECC-CCeEeeee
Q 004410 472 IVSAVCYCPD----GKGGIVGTMTGNCRFYDIK-DNQLYQQN 508 (755)
Q Consensus 472 ~V~~v~~spd----g~~la~gs~dg~I~iwD~~-~~~~~~~~ 508 (755)
.-...||-|. .+-.+.+..- ..++|..+ .|..+.+.
T Consensus 213 ~~~GACF~~g~~~~q~~~IycaRP-G~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 213 IDFGACFFPGQCKAQKPQIYCARP-GLRLWEADFAGEVIKTH 253 (726)
T ss_pred cccceEEeeccccCCCceEEEecC-CCceEEeecceeEEEee
Confidence 1344566553 2333443333 35677655 24444433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.012 Score=64.79 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=84.4
Q ss_pred cceEEEEEcc-CCCeEEEE----eCCCc----EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 471 EIVSAVCYCP-DGKGGIVG----TMTGN----CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 471 ~~V~~v~~sp-dg~~la~g----s~dg~----I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
....++.|+- ++..+.+. +.+|. -.+|++..+++...... .-.....+.+++++| +...++.|+.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvt-----sipL~s~v~~ca~sp-~E~kLvlGC~ 279 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVT-----SIPLPSQVICCARSP-SEDKLVLGCE 279 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEE-----EEecCCcceEEecCc-ccceEEEEec
Confidence 3446677776 34444432 33444 45788776655432221 123456899999999 8999999999
Q ss_pred CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 542 DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||.|.+||.......... ..-..+.++|+|+|.++++|+.-|.|.+||+.-..
T Consensus 280 DgSiiLyD~~~~~t~~~k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 280 DGSIILYDTTRGVTLLAK----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCeEEEEEcCCCeeeeee----ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999999998765444332 33457889999999999999999999999987654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0048 Score=70.13 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc-EEEEEEeeCCCCEEEEEeCCCc-----EEEEEcCCC-----
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY-VTSVAFNPVDDNYFISGSIDGK-----VRIWEVRRC----- 461 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~-V~~i~fsp~d~~~l~sgs~Dg~-----V~iwdl~~~----- 461 (755)
+|++++ .++.|+.+|.|.+.+- +.+.+..|. +... |+.+.... ..++|++.+.|+. |+||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 356666 9999999999888863 333334443 4433 55554443 5578888777654 899999742
Q ss_pred -eEE---Eecc-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee-eeeEEecccccCCCCCeEEEEEcCC
Q 004410 462 -QVV---DYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 462 -~~~---~~~~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+++ .... ...++.+++.+.+-+.+|+|-.+|.|..|.-.--+-.. ...+ ......+||++.+..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-----~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-----SHRGKEPITGLALRS- 181 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-----eccCCCCceeeEEec-
Confidence 233 2222 24568899999999999999999999998532111000 1111 122357899999988
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++..++-......|.+|.+........ ....|...+.+.+|++....+++++. ..|++|+.+..+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~-~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK-VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee-eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 566544444556788888764332222 22556677888888765554555543 589999987544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0048 Score=68.27 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=94.5
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
..++|...+.+++-...++|.|+.--.....+.+.....+..|-. |.+|+..+.+ .|.+||+.+++.+.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecCC
Confidence 457898877888888889999973222222233433334554442 6677666544 89999999999997666554
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCC------------eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN------------QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~------------~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
|..+.|+++|.+++..+.+ .+.|++.... ....... -...|.+.+|.- + .++-.
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------~~~~IkSg~W~~-d--~fiYt 212 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------ISERIKSGCWVE-D--CFIYT 212 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------E-S--SEEEEET-T--EEEEE
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------ecceeEEEEEEc-C--EEEEE
Confidence 8999999999999998755 6667654433 1111000 024677777864 2 33333
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.. .++.+-... .... .....++.-+.+.+....|.....|+.|..+.++...
T Consensus 213 T~~-~lkYl~~Ge-~~~i----~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 213 TSN-HLKYLVNGE-TGII----AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -TT-EEEEEETTE-EEEE----EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred cCC-eEEEEEcCC-cceE----EEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 333 555432211 1111 1124466667777877888888899999999887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0051 Score=69.27 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=116.2
Q ss_pred EcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEEEeccC
Q 004410 396 WSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 396 ~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~~~~~~ 469 (755)
+.|+| .+ .+.-..+.+.+.|..+.+....+.-......++++| ++.++++.+.+. ++...+..+...+.....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34555 22 233345677888888887777776666677889999 888888776432 233333322221111111
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCC-----CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCC
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-----NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADS 543 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-----~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg 543 (755)
.. ...+.++|++..++ +++|.+.|..+ ......+. -.....++.++| |+++++++ ..+.
T Consensus 279 ~~---iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP---------VGKsPHGV~vSP-DGkylyVanklS~ 343 (635)
T PRK02888 279 AR---IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP---------VPKNPHGVNTSP-DGKYFIANGKLSP 343 (635)
T ss_pred HH---HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE---------CCCCccceEECC-CCCEEEEeCCCCC
Confidence 00 01344578877763 67899999998 33333221 245678899999 66666555 4589
Q ss_pred cEEEEECCcceeeE----------EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 544 LVRVLCGENVVGKF----------KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 544 ~I~iwd~~~~~~~~----------~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+|.|+|..+....+ ... ..........+|.++|....|-.-|+.|..||+..
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999988754321 111 11223345678999999889999999999999986
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0066 Score=64.59 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=133.7
Q ss_pred eeeccCcceeecCCCCeeEE-eeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 233 RIIDRHGSATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~las-gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
+|......-+|.+||+.|+. +..+|.-.+|-+.-...+... |..+. .......++|+.+.|+-......|+-
T Consensus 33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence 33444445678999986555 444666555544332222222 22221 11223566788888876655667888
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCcee-EEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLI-PIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
-|+.+.+....+..+..-.....+..+.....+ .+..... ..+++.
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--------------------------d~~~l~------- 153 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--------------------------DWKPLT------- 153 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--------------------------G------------
T ss_pred EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeeh--------------------------hccCcc-------
Confidence 888887654444443332222222222211111 0000000 000000
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC---CC-cEEEEEcC--CCeE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DG-KVRIWEVR--RCQV 463 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~---Dg-~V~iwdl~--~~~~ 463 (755)
.|..-..+..+--...|.--|+.+++....+.....+..+.|+|.+..+|+-|-. +. .-|||-++ ....
T Consensus 154 -----~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 154 -----KWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp -----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred -----ccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 0000001111222344666689999998888889999999999977777777653 22 12556544 3333
Q ss_pred EEec--cCCcceEEEEEccCCCeEEEEeC-----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 464 VDYT--DIREIVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 464 ~~~~--~~~~~V~~v~~spdg~~la~gs~-----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
.... .....+..=-|.|||..|.--+. +..|.-+|+.++........ .....+..++ ++.++
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~-Dg~L~ 297 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSP-DGKLF 297 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-T-TSSEE
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcC-CCCEE
Confidence 3222 22345677789999988765322 33477788887765432111 1234455566 77776
Q ss_pred EEEECCC----------------cEEEEECCcceeeEEEe------eeccC--CceEEEEEecCCCEEEE-EeCCCcEEE
Q 004410 537 IVTSADS----------------LVRVLCGENVVGKFKAS------AFRVA--GSQMFATFTSDGKHVVS-PSEDSNIYI 591 (755)
Q Consensus 537 ~s~s~Dg----------------~I~iwd~~~~~~~~~~~------~~~~~--~~v~~l~fspdg~~L~s-gs~Dg~I~i 591 (755)
+--+.|. .|++++........... ...+. ..=..+.|+|||++|+- +...|...|
T Consensus 298 vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 298 VGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp EEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EE
T ss_pred EecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccE
Confidence 6555442 34556655432221110 00000 01246789999998764 556777777
Q ss_pred EEcC
Q 004410 592 WNYS 595 (755)
Q Consensus 592 Wd~~ 595 (755)
|-++
T Consensus 378 Y~v~ 381 (386)
T PF14583_consen 378 YLVE 381 (386)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.074 Score=57.75 Aligned_cols=276 Identities=13% Similarity=0.129 Sum_probs=144.6
Q ss_pred cCCCCeeEEe---------eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 244 KPGDHELTLG---------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 244 spdg~~lasg---------s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
|||+++++.. +..+.+.|+|+.++.. .. +......+....|||+|++||... ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~--~~------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI--TP------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE--EE------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce--EE------CcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5788877663 2245688888776432 11 111256788899999999999876 5789999987
Q ss_pred CCeeeeeeecC-----------------CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce------EEEeCC
Q 004410 315 EHERLDGFDVQ-----------------DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT------CVVLPP 371 (755)
Q Consensus 315 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 371 (755)
++...+.-... -.....++|+++.. .++.+..+...+............. .+.++.
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCC-EEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 77443222111 11234566666654 3444444444333333322222211 111110
Q ss_pred ----------cceeccCccceEe------cCCCCCEEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeEEEEEe--c
Q 004410 372 ----------KVFRLLEKPLHEF------QGHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRCLRVFS--H 427 (755)
Q Consensus 372 ----------~~~~~~~~~~~~~------~gh~~~V~~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h 427 (755)
.+.++.......+ ..-...+..+.|.+++ .|+..-.+ ..+.++|..++.+...+. .
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 1111111111111 1234467889999998 35554433 236777887766544442 3
Q ss_pred CCcE---EEEEEe-eCCCCEEEEEeCCCc--EEEEEcCCCeEEEeccCCcceEE-EEEccCCCeEE-EEeCCC----cEE
Q 004410 428 NNYV---TSVAFN-PVDDNYFISGSIDGK--VRIWEVRRCQVVDYTDIREIVSA-VCYCPDGKGGI-VGTMTG----NCR 495 (755)
Q Consensus 428 ~~~V---~~i~fs-p~d~~~l~sgs~Dg~--V~iwdl~~~~~~~~~~~~~~V~~-v~~spdg~~la-~gs~dg----~I~ 495 (755)
...| ..+.|. +.+..+|.....||. |.+++...+....+....-.|+. +.++++++.|. ++..++ .|+
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 3333 245554 635556666667775 66667777777777766777755 67888877665 444422 455
Q ss_pred EEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 496 FYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 496 iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
..++. ++.+.. +......+ ..+.|+| ++++++..
T Consensus 311 ~v~~~~~~~~~~-----LT~~~~~~----~~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 311 RVSLDSGGEPKC-----LTCEDGDH----YSASFSP-DGKYYVDT 345 (353)
T ss_dssp EEETTETTEEEE-----SSTTSSTT----EEEEE-T-TSSEEEEE
T ss_pred EEEeCCCCCeEe-----ccCCCCCc----eEEEECC-CCCEEEEE
Confidence 55666 555432 22211111 7899999 66655543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=68.22 Aligned_cols=249 Identities=11% Similarity=0.064 Sum_probs=128.5
Q ss_pred ceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCC-CEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDG-QYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~ 307 (755)
.+..+...+..++|+|..+ ++..++.+.+|+|.|+.+.. ....+.+| ..||+++|.-|. ++|..|-..|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 3344455677799999999 67789999999999977544 33446677 789999998865 57777888999
Q ss_pred EEEEEccCCeeee-eeec--CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce-E
Q 004410 308 VRVWKVIEHERLD-GFDV--QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH-E 383 (755)
Q Consensus 308 I~vWdv~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 383 (755)
|.|||+...+... ++.. ...++..+...... .+.. .+. +..........|.... .. +.+.+ .
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n--~~f~----~gg------lLv~~lt~l~f~ei~~-s~-~~~p~vl 325 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN--KIFT----SGG------LLVFALTVLQFYEIVF-SA-ECLPCVL 325 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCcc--cccc----ccc------eEEeeehhhhhhhhhc-cc-cCCCccc
Confidence 9999997654221 1111 00111111110000 0000 000 0000000000010000 00 01111 1
Q ss_pred ecCCCCCEEEEEEcCCC--eEEEEeCCC------cEEE-EeCCCCeEEEEEe--c-CCc-----EEEEEEeeCCCCEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG--FLLSSSADK------TVRL-WQVGIDRCLRVFS--H-NNY-----VTSVAFNPVDDNYFIS 446 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~--~L~s~s~Dg------~V~i-Wdl~s~~~~~~~~--h-~~~-----V~~i~fsp~d~~~l~s 446 (755)
-.+..+...++++++.. .|++.-.+. .|-. -|-..|..+..-. + ..+ -+...+.+.+.++++.
T Consensus 326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 12234556667776633 444432211 0111 1112222221111 1 000 0112222224455544
Q ss_pred -EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECC
Q 004410 447 -GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 447 -gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~ 500 (755)
|...+.+.+||..+.++++......+|..++... +|.-++..-.|..++||..+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 4556789999999999998888889999988766 44444444457788888654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0032 Score=69.39 Aligned_cols=189 Identities=17% Similarity=0.252 Sum_probs=120.9
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEE--eCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCc--EEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSS--SAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGK--VRI 455 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~--s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~--V~i 455 (755)
+..-...+..-+|+|++ .++.. ... ..+.++|+.+++........+.-...+|+| |++.|+ +...||. |.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccEEE
Confidence 33344567778899988 33322 222 359999999998888877666677789999 666654 5556665 677
Q ss_pred EEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 456 wdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+|+..++...+....+.-+.-.|+|||+.|+..+.. |. |.++|+........ ... ...-..-.|+| +
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri---T~~------~~~~~~p~~Sp-d 336 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL---TFS------GGGNSNPVWSP-D 336 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe---ecc------CCCCcCccCCC-C
Confidence 788888866666666666678999999999876654 33 77778877765321 111 11112667899 7
Q ss_pred CCEEEEEEC-CCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSA-DSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+++|+..+. +|. |.+.|..+... ... ..........+|.++|+.|+..+.-
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~--lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGK-IRI--LTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCc-EEE--ccccccCCCCCcCCCCceEEEeccC
Confidence 777776664 344 44555443332 221 2334444566788898887765543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.033 Score=59.60 Aligned_cols=201 Identities=18% Similarity=0.279 Sum_probs=124.0
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCC------CCEEEEEeC----------CCcEEEEEcCCC-----eE--
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD------DNYFISGSI----------DGKVRIWEVRRC-----QV-- 463 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d------~~~l~sgs~----------Dg~V~iwdl~~~-----~~-- 463 (755)
..|++.|..+.+.+..+. ....+++++..... ..+|+.|+. .|.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358899998888877664 55566666554322 467777753 288999999984 32
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCe-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+......++|++++-- +| .|+++. .+.|.+|++...+ +....... ....++++.... .++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccc---cEEEEEEcc
Confidence 2445667889998876 33 455544 5899999999888 54332221 122677777654 699999998
Q ss_pred CcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcccCCCc-cccceeeeecCCeEE
Q 004410 543 SLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSK-SIWSCESFLSHNVSV 620 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~f~~~~~~v 620 (755)
..+.++........+... .......++++.|-++++.++.+..+|.|.++.++.......... .......|.-.....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 888887544322222211 123455688999987778999999999999999975432222222 344444444434333
Q ss_pred EE
Q 004410 621 AI 622 (755)
Q Consensus 621 a~ 622 (755)
.+
T Consensus 229 ~~ 230 (321)
T PF03178_consen 229 SF 230 (321)
T ss_dssp EE
T ss_pred eE
Confidence 33
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=2.4e-05 Score=85.29 Aligned_cols=199 Identities=16% Similarity=0.216 Sum_probs=132.3
Q ss_pred CCCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEE-EEE--ecCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEE
Q 004410 388 SSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCL-RVF--SHNNYVTSVAFNPVDDNYFISGS----IDGKVRIWE 457 (755)
Q Consensus 388 ~~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~-~~~--~h~~~V~~i~fsp~d~~~l~sgs----~Dg~V~iwd 457 (755)
...+.|+++.-+. .++.|..+|.|-+-.++...-. ..+ ++..+.++++|++.|.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4456677765543 7888999999999887654332 222 47889999999998778888774 356799999
Q ss_pred cCCCeEE-----Eecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 458 VRRCQVV-----DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 458 l~~~~~~-----~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
+.++-.+ .+.. ......++||-.+.+++++|.....++++|++...... .....+.+.++.+.|-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------SSVNTKYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------hhhhhhhcccceecCC
Confidence 9876221 1222 33456689999999999999999999999998432211 1122345667778886
Q ss_pred CCCEEEEEECCCcEEEEE-CCcceeeEEEe---eeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCC
Q 004410 532 DPSKVIVTSADSLVRVLC-GENVVGKFKAS---AFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSN 596 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd-~~~~~~~~~~~---~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~ 596 (755)
.+.+++.-. ||.|.+|| ..+....+... .......+..++|.|... .+++.. ..++|+++++..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 666766655 99999999 33332222221 011123478899988532 344444 457799999854
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.11 Score=51.59 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
..+++.|+..+.+.--|...+.....+. . ...|.+-+.- -|++++.|+..|.+.+-++.+|.....+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i------l--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI------L--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh------h--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 3477788888888888877655433321 1 1222222221 477899999999999999999977666544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.033 Score=58.32 Aligned_cols=245 Identities=14% Similarity=0.113 Sum_probs=131.2
Q ss_pred ceeecCCCCeeEEe----------eCCCeEEEEECCCCcccccc-cccceeeecccccEEEEEEecCCCEEEEEc--CCC
Q 004410 240 SATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSS-LYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDG 306 (755)
Q Consensus 240 ~~~~spdg~~lasg----------s~dg~V~Vw~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~fspdg~~LaSgs--~Dg 306 (755)
.+.++|+++.++++ -..-.|.+||..+....... ++....++. -.....++++.||++++..- ---
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~-~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV-VPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B-S--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee-cccccceEEccCCcEEEEEccCCCC
Confidence 37889999988763 33456999998764321110 111101100 01112357788888777643 344
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.|-|+..++.+.++..+. |....+
T Consensus 119 SVtVVDl~~~kvv~ei~~PG----C~~iyP-------------------------------------------------- 144 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG----CWLIYP-------------------------------------------------- 144 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS----EEEEEE--------------------------------------------------
T ss_pred eEEEEECCCCceeeeecCCC----EEEEEe--------------------------------------------------
Confidence 68888888887776665421 110000
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEE----Ee-cCCcE-EEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRV----FS-HNNYV-TSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~----~~-h~~~V-~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+.+..+.+.+.||.+.-..+. .|+.... |. ..+++ ..-++.. .+..++--+.+|.|+--|+.
T Consensus 145 ----------~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 145 ----------SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp ----------EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEET
T ss_pred ----------cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEecc
Confidence 011134455555555555554 3333211 11 12222 2333443 45556667889999998887
Q ss_pred CCeEE---EeccC----------CcceEEEEEccCCCeEEEEeCC---C-------cEEEEECCCCeEeeeeeEEecccc
Q 004410 460 RCQVV---DYTDI----------REIVSAVCYCPDGKGGIVGTMT---G-------NCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 460 ~~~~~---~~~~~----------~~~V~~v~~spdg~~la~gs~d---g-------~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
..... .+.-. .+.-.-+++++..+.|.+.-.. | .|.+||+.+++.+..+.+.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----- 288 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----- 288 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-----
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-----
Confidence 76533 12111 1223447787766666553322 1 2888899999988765431
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeEEE
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~ 559 (755)
..+.+++++.++..+|++.+ .++.+.+||..+.+.....
T Consensus 289 ----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 289 ----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 24668999986666776654 5799999999987555544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.022 Score=57.85 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=101.5
Q ss_pred eeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCC-CCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+-...|..|.|+|+.+ ++|+....+.|...+. +|+.++.+.... .+...+.+..++ .++...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~--~~vl~~---------- 82 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG--RYVLSE---------- 82 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT--EEEEEE----------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC--EEEEEE----------
Confidence 3445555699999999755 6666777788877786 578887776654 334444443222 111111
Q ss_pred eeeecCCceEEEeCCcc----eeccCcc---ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CeEEEEE
Q 004410 357 SLRKSSDLTCVVLPPKV----FRLLEKP---LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---DRCLRVF 425 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s---~~~~~~~ 425 (755)
.....++.+.... ....... +.....+...+-.|+|.+.+ .|+.+-...-..||.+.. ...+...
T Consensus 83 ----Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 83 ----ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp ----TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred ----cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 1111121111100 0000000 01112355678999999976 777777777777776653 2222222
Q ss_pred e---------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC----------cceEEEEEccCCCeEE
Q 004410 426 S---------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----------EIVSAVCYCPDGKGGI 486 (755)
Q Consensus 426 ~---------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----------~~V~~v~~spdg~~la 486 (755)
. ....+.+++++|..+++++.......|.++| .+++++...... ...-.|+|.++|++.+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 3456899999998888888888899999999 556655422222 2578899999996555
Q ss_pred EEeCCCcEEEE
Q 004410 487 VGTMTGNCRFY 497 (755)
Q Consensus 487 ~gs~dg~I~iw 497 (755)
+ +.-+..++|
T Consensus 238 v-sEpNlfy~f 247 (248)
T PF06977_consen 238 V-SEPNLFYRF 247 (248)
T ss_dssp E-ETTTEEEEE
T ss_pred E-cCCceEEEe
Confidence 5 455544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.023 Score=62.73 Aligned_cols=177 Identities=11% Similarity=0.161 Sum_probs=94.9
Q ss_pred cEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-------ccCCcceEEEEEccC
Q 004410 410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-------TDIREIVSAVCYCPD 481 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-------~~~~~~V~~v~~spd 481 (755)
.|+||+.. |+.+..+. ..+.|.++.|.. + ..|++-..||.+++||+.......+ .-....+.++.+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 59999865 44555553 338999999986 4 5566677899999999975441110 001111222233334
Q ss_pred CCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-CC-CCCeEE-EEEcCCCCCEEEEEECCCcEEEEECCcceeeEE
Q 004410 482 GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-LP-GKRITG-FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 482 g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~~-~~~I~~-v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
| +++-+.++.+.+..-.................. .+ ...... ..++. +....+....++.+.+.+......
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---
Confidence 4 555566666655533222211000000011000 00 001111 23333 344444445556666444332211
Q ss_pred EeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....+++..+++||+|++||.-..+|.+.|...+-.+
T Consensus 213 ---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred ---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 2234689999999999999999999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.025 Score=61.84 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=117.2
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE-------------------------------------------EEEE
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC-------------------------------------------LRVF 425 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~-------------------------------------------~~~~ 425 (755)
.|+.+.|.++. .|+.+...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788888876 888888888888885421110 0011
Q ss_pred -ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc---------CCcceEEEEEcc-----CC---CeEEE
Q 004410 426 -SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD---------IREIVSAVCYCP-----DG---KGGIV 487 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~---------~~~~V~~v~~sp-----dg---~~la~ 487 (755)
...+.|++++.+ +=.+++.|..+|.|.|.|++...++.... ....|+++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 146789999986 56799999999999999999988874322 223588888874 33 47899
Q ss_pred EeCCCcEEEEECC--C-CeEeeeeeEEecccccCCCCCeEEEE-EcCC-------------------CCCEEEEEECCCc
Q 004410 488 GTMTGNCRFYDIK--D-NQLYQQNQICLQGKKKLPGKRITGFQ-FSPS-------------------DPSKVIVTSADSL 544 (755)
Q Consensus 488 gs~dg~I~iwD~~--~-~~~~~~~~~~~~~~~~~~~~~I~~v~-fsp~-------------------d~~~l~s~s~Dg~ 544 (755)
|+..|.+.+|.+. . +... ..+......+..+|..+. ++.+ .-.-+++...+..
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 9999999999874 1 2111 111121222334444433 3211 1123556666889
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEE-----ecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATF-----TSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~f-----spdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++|+...+.+...+. .........+++ ...+..|++-..+|.|++|.+..-+.
T Consensus 237 irv~~~~~~k~~~K~--~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKS--FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred eEEEeCCCCccccee--eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 999998776655554 322222334445 23577889999999999999988663
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.063 Score=55.92 Aligned_cols=195 Identities=13% Similarity=0.151 Sum_probs=107.2
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE---------------EEecCCcEEEEE-EeeCCCCEEEEEeCCCcE
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR---------------VFSHNNYVTSVA-FNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~---------------~~~h~~~V~~i~-fsp~d~~~l~sgs~Dg~V 453 (755)
|..+...++- .|++- .|+.|+++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888766 44433 45999999986543333 222334455444 112244444445556689
Q ss_pred EEEEcCCC-----eEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc----cccCCCCCeE
Q 004410 454 RIWEVRRC-----QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKKLPGKRIT 524 (755)
Q Consensus 454 ~iwdl~~~-----~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~~~~~~I~ 524 (755)
.+|..... +...-......+.+++|. ++.|++|..+ ...+.|+.++....-....... .......++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 98887653 344445566889999998 5688888744 5888999976654321110000 0011223344
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.+... ++.+|++ . |..-.+.+....... ... ..-.....++++ ...||+..+.+ .|-||++.+++
T Consensus 194 ~~~~~--~~e~Ll~-~-~~~g~fv~~~G~~~r-~~~-i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 194 IFQLS--DNEFLLC-Y-DNIGVFVNKNGEPSR-KST-IQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred EEEeC--CceEEEE-e-cceEEEEcCCCCcCc-ccE-EEcCCchhEEEE--ECCEEEEECCC-EEEEEECcCCc
Confidence 44443 3344443 2 333333333221111 111 222335556666 34688877765 59999999996
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.019 Score=63.59 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=106.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
...+.++|+|++++. +.+|...|+...... ....+.-....|.+.++ +|+-...+.|.|+.--+..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r------------~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR------------NKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTE------------EEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCc------------ccccCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 456899999999888 667788888732111 01234555678988555 5666667889997422211
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
....+ . ....+..|-.
T Consensus 101 ~~k~i--------------------------------------------------------------~-~~~~~~~If~- 116 (443)
T PF04053_consen 101 VVKSI--------------------------------------------------------------K-LPFSVEKIFG- 116 (443)
T ss_dssp TT--------------------------------------------------------------------SS-EEEEE--
T ss_pred cceEE--------------------------------------------------------------c-CCcccceEEc-
Confidence 10010 0 0011233322
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC------------eEEE
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------------QVVD 465 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~------------~~~~ 465 (755)
|.|+....++.|.+||..+++.++.+.... |..+.|++ ++++++..+.+ .+.|++.... ....
T Consensus 117 --G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~ 191 (443)
T PF04053_consen 117 --GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFEL 191 (443)
T ss_dssp --SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEE
T ss_pred --CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEE
Confidence 634444444589999999999999997664 99999999 89999888754 6777766544 3333
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
.......|.+.+|..| .++-.+.. +++. +-+|....- ..-..+++=+.+.| ..+.+.....|+.|
T Consensus 192 ~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i---------~~ld~~~yllgy~~-~~~~ly~~Dr~~~v 256 (443)
T PF04053_consen 192 IHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII---------AHLDKPLYLLGYLP-KENRLYLIDRDGNV 256 (443)
T ss_dssp EEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE---------EE-SS--EEEEEET-TTTEEEEE-TT--E
T ss_pred EEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE---------EEcCCceEEEEEEc-cCCEEEEEECCCCE
Confidence 3333567778888554 44444433 4444 333332110 00123444455555 44555555566666
Q ss_pred EEEECC
Q 004410 546 RVLCGE 551 (755)
Q Consensus 546 ~iwd~~ 551 (755)
..+.+.
T Consensus 257 ~~~~ld 262 (443)
T PF04053_consen 257 ISYELD 262 (443)
T ss_dssp EEEE--
T ss_pred EEEEEC
Confidence 555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.027 Score=61.22 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c-----------------CCcEEEEEEeeCCCCEEEEEe
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H-----------------NNYVTSVAFNPVDDNYFISGS 448 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h-----------------~~~V~~i~fsp~d~~~l~sgs 448 (755)
...+....|+|+| .++.. .++.|.++++.++...+.-. . -+.-..+-|+| |+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE
Confidence 4557778999999 44444 56889999988775443321 1 11235678999 888877654
Q ss_pred CC-C-----------------------------------cEEEEEcCCCeEEE--e----ccCCcceEEEEEccCCCeEE
Q 004410 449 ID-G-----------------------------------KVRIWEVRRCQVVD--Y----TDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 449 ~D-g-----------------------------------~V~iwdl~~~~~~~--~----~~~~~~V~~v~~spdg~~la 486 (755)
.| . .+.|+|+.+++... . ......+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 33 2 23334444443321 1 12344588899999998554
Q ss_pred EEeC--CC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 487 VGTM--TG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 487 ~gs~--dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.-. +. .+.++|..++...........+- -..-..+.|. +.+..++.....+|.-+|+-........+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W----v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~- 274 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW----VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ- 274 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS----SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcc----eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec-
Confidence 4332 22 26777887765543322111111 1122344554 656677777778887666654433333222
Q ss_pred eeccCCceE-EEEEecCCCEEE-EEeCCC----cEEEEEcC
Q 004410 561 AFRVAGSQM-FATFTSDGKHVV-SPSEDS----NIYIWNYS 595 (755)
Q Consensus 561 ~~~~~~~v~-~l~fspdg~~L~-sgs~Dg----~I~iWd~~ 595 (755)
+....-.|. -+.++++++.|+ +|..++ .|+.-++.
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 133344554 467888877655 554432 45555555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.065 Score=58.74 Aligned_cols=200 Identities=14% Similarity=0.169 Sum_probs=137.9
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcCCCeEEEe
Q 004410 392 LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 392 ~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~~~~~~~~ 466 (755)
..++.++.+ .+++...+..|.+.|..+...+....-......++++| ++..++.+.. ++++.+.|..+..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 456777777 44555557999999998888888887666888999999 6766655544 68899999998888765
Q ss_pred ccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC---
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--- 542 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--- 542 (755)
......-..++++|+|+.+++.. .++.|.++|..+..... ... .........-..+.+.| ++.++.+....
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 43333348999999999777765 78899999988776652 110 00111233456788999 66655554433
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~~~~ 598 (755)
+.+.+.|..+............. ....+.++|+|+++.+.... +.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 58888887764433331112222 45678899999999888544 788888887765
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.057 Score=53.50 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=82.9
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYC 479 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~s 479 (755)
+++.|+..+.+.--|..+|+.+-.......|.+-+.- -+++++.|...|.+++.+..++.... +......-......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 7888889999999999999887766566667666654 47889999999999999999996553 33333322345567
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 480 PDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 480 pdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+++..+..|+.|++.+..|.++...+..
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999998887764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.019 Score=49.86 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred EEEEEEc---CCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 391 VLDLSWS---KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 391 V~~l~~s---~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
|.+|++. .+| .|+.|+.|..||+|+- ...+..+.....|++++-.. ...|+.+..+|+|-+|+-.... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~Rl-WR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQRL-WR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCccee-ee
Confidence 4555554 354 8999999999999974 57788888889999998776 4789999999999999864322 22
Q ss_pred eccCCcceEEEEEcc-CC---CeEEEEeCCCcEE
Q 004410 466 YTDIREIVSAVCYCP-DG---KGGIVGTMTGNCR 495 (755)
Q Consensus 466 ~~~~~~~V~~v~~sp-dg---~~la~gs~dg~I~ 495 (755)
...+..++++++.. ++ ..|++|-.+|.|-
T Consensus 77 -iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 -IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22334466665544 32 3688888888764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.045 Score=58.61 Aligned_cols=170 Identities=12% Similarity=0.171 Sum_probs=103.5
Q ss_pred CcEEEEeCCCC-----eEE--EEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EEEeccCCc--ceEEEEE
Q 004410 409 KTVRLWQVGID-----RCL--RVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VVDYTDIRE--IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~-----~~~--~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~~~~~~~~--~V~~v~~ 478 (755)
|.|.++++... +.. ......+.|++|+-. ++. |+.+. .+.|.+|++...+ +.....+.. .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 222 223478999999865 344 44433 5899999999887 664333333 4555554
Q ss_pred ccCCCeEEEEeCCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc---
Q 004410 479 CPDGKGGIVGTMTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV--- 553 (755)
Q Consensus 479 spdg~~la~gs~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~--- 553 (755)
.+++|++|.....+.++..+. .++... . .......++++.|.+ ++..++++..+|.+.++.....
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~v------a-~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILV------A-RDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEE------E-EESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SS
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEE------E-ecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcc
Confidence 466999999988888775443 223221 1 222345689999987 3369999999999999886521
Q ss_pred ---ee-eE-EEeeeccCCceEEE---EEec--CCC------EEEEEeCCCcEEEE
Q 004410 554 ---VG-KF-KASAFRVAGSQMFA---TFTS--DGK------HVVSPSEDSNIYIW 592 (755)
Q Consensus 554 ---~~-~~-~~~~~~~~~~v~~l---~fsp--dg~------~L~sgs~Dg~I~iW 592 (755)
.. .+ ..........|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 208 ~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 208 SRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 11 11 11223445667777 4445 222 48888899999844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.27 Score=54.42 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=43.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+....+....++.+.+.+-...+. ....+++..+++||+|++||.-+.+|.+.+....-.+...+
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEE
Confidence 445555555556666444332211 22346899999999999999999999999988765555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=71.44 Aligned_cols=164 Identities=11% Similarity=0.090 Sum_probs=111.1
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
+...|.--++.. .+.+++.|+.-|.|++|+-..++...... ....+..++.+++..++|+|+..|.|.+|.+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 333444344444 78999999999999999998887664443 566778889999999999999999999999887433
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-eeeE-EEeeeccCCceEEEEEecCCCEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV-VGKF-KASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~-~~~~-~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
... +.+....+.|...|++++|++ ++..+++|...|+|..-.+... .... ........+.|..+... ++.+|++
T Consensus 111 ~~~--~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 111 RDL--DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred Ccc--eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 221 112222344788999999999 9999999999999998876651 1111 11113345566666654 3444444
Q ss_pred EeCCCcEEEEEcCCC
Q 004410 583 PSEDSNIYIWNYSNQ 597 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~ 597 (755)
... .-.+++++.+
T Consensus 187 tl~--r~~Lc~tE~e 199 (726)
T KOG3621|consen 187 TLT--RCILCQTEAE 199 (726)
T ss_pred hhh--hhheeecchh
Confidence 433 2344555444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.014 Score=64.38 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred EEEEcCCC--eEEEEeCCCc--EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEE
Q 004410 393 DLSWSKNG--FLLSSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVD 465 (755)
Q Consensus 393 ~l~~s~~~--~L~s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~ 465 (755)
.-+|+||| .+++...|+. |.+.|+.+++..+.....+.-+.-.|+| +|+.++-.+. .| .|.++++..+....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 46799999 4555666665 5566887777444222223333567899 8887766554 34 47777888776654
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCC-Cc--EEEEECCCCe
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMT-GN--CRFYDIKDNQ 503 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~d-g~--I~iwD~~~~~ 503 (755)
.......-..-.|+|||++|+..+.. |. |.++|+.++.
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 44443333378899999999887753 44 6666666554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.89 Score=53.37 Aligned_cols=340 Identities=11% Similarity=0.133 Sum_probs=166.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
...++++...+.+..+|.+...-..-.....+.+.+..++.+-..-..|+..-++| +|.+|+.-|.=++-.+.+.....
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~g 341 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVG 341 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCC
Confidence 34567888888888888876654431111122222333455555666677766665 78888887766666554432211
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee-eecCCceEEEeCCcceeccCccceEecCCCCCEEEEE--Ec
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL-RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WS 397 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~--~s 397 (755)
.....-.. ......-..+..++.....-.....+ ....++...++.+.. .+.+.....+.| -..++.+. +.
T Consensus 342 sy~~ilet----~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w~lk~~v~ 415 (1096)
T KOG1897|consen 342 SYVVILET----FVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMWSLKSMVD 415 (1096)
T ss_pred chhhhhhh----cccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-ccceeEeecccc
Confidence 00000000 00000001111112211111111111 222333333333221 111112223334 33455555 33
Q ss_pred C--CCeEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE
Q 004410 398 K--NGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS 474 (755)
Q Consensus 398 ~--~~~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~ 474 (755)
+ +.+|+.+=. +.-++..+... +.............+..+-..++.|+=.. ...||+++-. +..-.|... ..++
T Consensus 416 ~~~d~ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~p-~~~t 491 (1096)
T KOG1897|consen 416 ENYDNYLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRPP-GKIT 491 (1096)
T ss_pred ccCCcEEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccCC-CceE
Confidence 2 223333322 22334444322 11111122333344444443444433332 3457777765 333344443 3344
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--CCC---EEEEEECCCcEEEEE
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--DPS---KVIVTSADSLVRVLC 549 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~---~l~s~s~Dg~I~iwd 549 (755)
....+.+...+++++.++.+...++..+.+.... .......|.|+.++|. +.+ ++++|..+..+.+.-
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 4445556668888887888888888777644322 2223468999999974 334 889998887766553
Q ss_pred CC-cceeeE--EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 550 GE-NVVGKF--KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 550 ~~-~~~~~~--~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.. +..... ......-+..|.-.+|-.|..||.++..||.++-|.+....
T Consensus 565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence 22 211111 11112234456667777788999999999999877776544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0087 Score=69.85 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=99.5
Q ss_pred CCCEEEEE-eCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccC-------CCeEEEEeCCCcEEEEECCCCe--Eeeee
Q 004410 440 DDNYFISG-SIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPD-------GKGGIVGTMTGNCRFYDIKDNQ--LYQQN 508 (755)
Q Consensus 440 d~~~l~sg-s~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spd-------g~~la~gs~dg~I~iwD~~~~~--~~~~~ 508 (755)
+.++|+.- .....|+-.|+..++++. |..+... .-..|.|+ ....++|-.+..+..||.+-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-- 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-- 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee--
Confidence 44454443 356789999999999994 5554433 23445553 3456788889999999998532 221
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
-+.+........+|++-. ...+||+|+.+|.||+||... ...+....+...+|+.+..+.||++|++.+. ..
T Consensus 569 ---~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-ty 640 (794)
T PF08553_consen 569 ---SQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILATCK-TY 640 (794)
T ss_pred ---ccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ce
Confidence 122223345667777766 567899999999999999433 2233333566789999999999999987764 57
Q ss_pred EEEEEcC
Q 004410 589 IYIWNYS 595 (755)
Q Consensus 589 I~iWd~~ 595 (755)
|.|++..
T Consensus 641 LlLi~t~ 647 (794)
T PF08553_consen 641 LLLIDTL 647 (794)
T ss_pred EEEEEEe
Confidence 8888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.042 Score=62.11 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=76.9
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCC-----CeEEEEEecCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEcCCCeE------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQV------ 463 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s-----~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~Dg~V~iwdl~~~~~------ 463 (755)
.++| +... .++.|.+.|..+ .+.+..+.-......+.++| |+++++++ ..+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 4456 3332 367899999998 46777777888899999999 88877654 5689999999987542
Q ss_pred ------EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 464 ------VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 464 ------~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
+............+|.++|+...+...|..|..||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222334456788999998888888999999999986
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.53 Score=48.95 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=127.0
Q ss_pred cCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeee
Q 004410 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 244 spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~ 323 (755)
...++.|+.|+.+| +.+++........ -..+...|..|...|+-+.|++-+ |+.+.++++..-.......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~--------~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT--------RILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccce--------eEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccc
Confidence 34678899999998 8888872111111 111333499999999877777665 5999999987654321100
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE--EcCCC-
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS--WSKNG- 400 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~--~s~~~- 400 (755)
...... . ............+...+ -...+
T Consensus 74 ~~~~~~--------------------~----------------------------~~~~~~~~~~~~v~~f~~~~~~~~~ 105 (275)
T PF00780_consen 74 PLAFPK--------------------S----------------------------RSLPTKLPETKGVSFFAVNGGHEGS 105 (275)
T ss_pred cccccc--------------------c----------------------------ccccccccccCCeeEEeeccccccc
Confidence 000000 0 00000001112233333 11223
Q ss_pred eEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC-----
Q 004410 401 FLLSSSADKTVRLWQVGID-----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----- 470 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~-----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----- 470 (755)
..+.....++|.+|..... +..+.+.....+.+++|.+ +.++.|.. ....+.|+.++....+....
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~ 181 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSS 181 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeC-CceEEEecCCCCceEEeCccCCcch
Confidence 4455555668888876542 5667777889999999974 67777764 44888899977665443221
Q ss_pred --------cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 471 --------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 471 --------~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.++..+.. +++.+|++ . +..-.+.|..+... ....+. . ......+++.. .+|++...
T Consensus 182 ~~~~~~~~~~~~~~~~-~~~e~Ll~-~-~~~g~fv~~~G~~~-r~~~i~------W-~~~p~~~~~~~---pyli~~~~- 246 (275)
T PF00780_consen 182 FKSRNSSSKPLGIFQL-SDNEFLLC-Y-DNIGVFVNKNGEPS-RKSTIQ------W-SSAPQSVAYSS---PYLIAFSS- 246 (275)
T ss_pred hhhcccCCCceEEEEe-CCceEEEE-e-cceEEEEcCCCCcC-cccEEE------c-CCchhEEEEEC---CEEEEECC-
Confidence 12333333 33444443 2 33444445543322 111111 1 12445555543 45555555
Q ss_pred CcEEEEECCccee
Q 004410 543 SLVRVLCGENVVG 555 (755)
Q Consensus 543 g~I~iwd~~~~~~ 555 (755)
+.|.||++.+...
T Consensus 247 ~~iEV~~~~~~~l 259 (275)
T PF00780_consen 247 NSIEVRSLETGEL 259 (275)
T ss_pred CEEEEEECcCCcE
Confidence 5599999887643
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0027 Score=69.92 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=77.6
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE-EEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~-~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
-...|.-+.|+| .-.++|.+..+|.|.++.+.-.++..+.-+...++ ++||.|||+.||+|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 445688899999 89999999999999999999666666665667777 9999999999999999999999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
... .......|.++-|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 532 122345677777764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.017 Score=67.52 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=91.8
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCCC--eEEE----eccCCcc
Q 004410 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC--QVVD----YTDIREI 472 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~~--~~~~----~~~~~~~ 472 (755)
......|+-.|++.|+.+..+.....+.-..+.|. +....+.|-.+..|..||.|-. +++. .......
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34568899999999999999973333323334441 2345677888899999999863 3442 2234456
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
.+|++-+.+| +||+|+.+|.|++||--+ +. . ......-+.+|.+|..+. ||++|++++.. .+.+++
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~---A----KT~lp~lG~pI~~iDvt~-DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR---A----KTALPGLGDPIIGIDVTA-DGKWILATCKT-YLLLID 645 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccc-hh---h----hhcCCCCCCCeeEEEecC-CCcEEEEeecc-eEEEEE
Confidence 7888888777 789999999999999432 11 1 112233468999999999 88988877654 444444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.65 Score=53.15 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=101.3
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCC-CceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD-PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
+..|+.++.++.|.-.|..+|+.+..+...... .............+ .+.....+....+..++.++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~--------av~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV--------ALYDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccc--------eEECCEEEEEcCCCEEEEEECCCC
Confidence 446667777888999999999888776543211 00000000000000 011112233344455555554332
Q ss_pred eccCccceEec--CCC--CCEEEEEEcCCCeEEEEe------CCCcEEEEeCCCCeEEEEEec--CC-------------
Q 004410 375 RLLEKPLHEFQ--GHS--SEVLDLSWSKNGFLLSSS------ADKTVRLWQVGIDRCLRVFSH--NN------------- 429 (755)
Q Consensus 375 ~~~~~~~~~~~--gh~--~~V~~l~~s~~~~L~s~s------~Dg~V~iWdl~s~~~~~~~~h--~~------------- 429 (755)
++ +.... .+. ..+.+--..-++.++.+. .+|.|..+|+++++.+-.+.. ..
T Consensus 141 k~----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 141 KV----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CE----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 22 11111 111 011110001144455443 268899999999988766531 00
Q ss_pred -----------------cE-EEEEEeeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeEE-Eec--cCC--
Q 004410 430 -----------------YV-TSVAFNPVDDNYFISGSID-----G-----------KVRIWEVRRCQVV-DYT--DIR-- 470 (755)
Q Consensus 430 -----------------~V-~~i~fsp~d~~~l~sgs~D-----g-----------~V~iwdl~~~~~~-~~~--~~~-- 470 (755)
.+ ..+.+.| ..++++.+..+ + .|.-.|+++++++ .++ .|.
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w 295 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW 295 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc
Confidence 01 1235666 45556555421 2 5777788888877 222 221
Q ss_pred -----cceEEEEEccCCC---eEEEEeCCCcEEEEECCCCeEe
Q 004410 471 -----EIVSAVCYCPDGK---GGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 471 -----~~V~~v~~spdg~---~la~gs~dg~I~iwD~~~~~~~ 505 (755)
....-+.+..+|+ .++.++.+|.+++.|-.+++++
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1122233335776 7788999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=44.13 Aligned_cols=35 Identities=40% Similarity=0.904 Sum_probs=31.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
..+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.28 Score=51.74 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=97.3
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcEEEEEEeeCCCCEEEEEeC-----------CCcEEEEEc
Q 004410 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS------HNNYVTSVAFNPVDDNYFISGSI-----------DGKVRIWEV 458 (755)
Q Consensus 396 ~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~V~~i~fsp~d~~~l~sgs~-----------Dg~V~iwdl 458 (755)
....+.|+++.. .+.+++.+++..+..+. .....+.+.+.| ++.+.++... -|.|+.+|.
T Consensus 74 ~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 74 IDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred ecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC
Confidence 334445555543 35667766665533331 335567788888 7777666444 133444454
Q ss_pred CCCeEE-EeccCCcceEEEEEccCCCeEEEEeCC-CcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 459 RRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 459 ~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
.+..+ ....+-..-+.|+|+||++.|+.+... +.|+-|++.. +..-..... . .........-.++... ++.
T Consensus 151 -~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~-~--~~~~~~G~PDG~~vDa-dG~ 225 (307)
T COG3386 151 -DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF-V--DFDEEPGLPDGMAVDA-DGN 225 (307)
T ss_pred -CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE-E--EccCCCCCCCceEEeC-CCC
Confidence 34444 344445667889999999988887654 7788888763 111110000 0 0111223344455555 555
Q ss_pred EEEEEECCC-cEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEeC
Q 004410 535 KVIVTSADS-LVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPSE 585 (755)
Q Consensus 535 ~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs~ 585 (755)
+.+++..+| .|.+|+.. ....... .-....+++++|- ++.+.|+..+.
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i--~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEI--KLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEE--ECCCCCCccceEeCCCcCEEEEEec
Confidence 554444443 88889877 2222222 2122567788884 45565554443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.26 Score=56.05 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEecCCc------EE-EEEEeeCCCCEEEEEe---------CCCcEEEEEcCCCeE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNY------VT-SVAFNPVDDNYFISGS---------IDGKVRIWEVRRCQV 463 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~------V~-~i~fsp~d~~~l~sgs---------~Dg~V~iwdl~~~~~ 463 (755)
+.++.++.++.|+-+|.++++.+-.+..... +. ...+. +.+++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5777888899999999999999877753332 11 12222 24455554 367899999999887
Q ss_pred EEeccCC-c--------------------ce-EEEEEccCCCeEEEEeCCC------------------cEEEEECCCCe
Q 004410 464 VDYTDIR-E--------------------IV-SAVCYCPDGKGGIVGTMTG------------------NCRFYDIKDNQ 503 (755)
Q Consensus 464 ~~~~~~~-~--------------------~V-~~v~~spdg~~la~gs~dg------------------~I~iwD~~~~~ 503 (755)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 7322111 0 01 1345555667888887665 69999999999
Q ss_pred EeeeeeEEecccc--cCCCC-CeEEEEEcCCCCC---EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 504 LYQQNQICLQGKK--KLPGK-RITGFQFSPSDPS---KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 504 ~~~~~~~~~~~~~--~~~~~-~I~~v~fsp~d~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
.....+....... ..... .+..+. ..++. .+++++.+|.+..+|..+.......... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-- 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-- 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--
Confidence 8865443111000 00001 111111 11232 6788889999999999987776665322 11223333
Q ss_pred CEEEEE------------------eCCCcEEEEEcCCCC
Q 004410 578 KHVVSP------------------SEDSNIYIWNYSNQD 598 (755)
Q Consensus 578 ~~L~sg------------------s~Dg~I~iWd~~~~~ 598 (755)
..++.+ ..+|.|.-.|+.+++
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 223322 235778888888887
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.13 Score=51.93 Aligned_cols=249 Identities=18% Similarity=0.243 Sum_probs=135.7
Q ss_pred ceeecCCCC-eeEEeeCCCe-EEEEECCCCccccc-ccccceeeecccccEEEEEEecCCCEEEEEcC-----CCcEEEE
Q 004410 240 SATLKPGDH-ELTLGQRMRR-VRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-----DGTVRVW 311 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~-V~Vw~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-----Dg~I~vW 311 (755)
.++++|.-. -++.+-..|+ ..|+|......... .-...+.+.+|. .|||||.+|...-. -|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 367777655 4555666665 45677664432211 112234566775 59999999987643 3789999
Q ss_pred EccCC-eeeeeeecCCCCCceeEEeeCCCCceeEEe-ecCc-ceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 312 KVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPID-VDKE-KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 312 dv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
|...+ +.+.++..+.-.+.-+.+..++...+..-. +... .......-..+-...++..+....++.+|....-..+.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 98754 456667776666666666666543322211 0000 11111111111122233333333333333222222445
Q ss_pred CCEEEEEEcCCCeEEEEeC-CC-----cEEEEeCCCCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEe-CCCcE
Q 004410 389 SEVLDLSWSKNGFLLSSSA-DK-----TVRLWQVGIDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGS-IDGKV 453 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~-Dg-----~V~iWdl~s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs-~Dg~V 453 (755)
-.|..++.-++|.++.+.. .| --.+=....++.+..+. ...+|-+|+.+. +..+++..+ ..+..
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeE
Confidence 5677788888875554432 11 11111223344444442 457889999987 555555444 45568
Q ss_pred EEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
.+||..++.++......+ +.-.-+....+++.+.+|.|.+|.
T Consensus 305 vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEecc
Confidence 899999999986443322 222334556788888899998884
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.68 Score=48.82 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=84.8
Q ss_pred EEEEEEcCCCeEEEEeCC------------CcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe-CCCcEEEE
Q 004410 391 VLDLSWSKNGFLLSSSAD------------KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS-IDGKVRIW 456 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~D------------g~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iw 456 (755)
.+++...|+|.+..+.+. |.|+.+|. .+..++.+. +-..-+.|+|+| |++.|+.+. ..+.|.-|
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEE
Confidence 344555666644444433 23444443 444544443 355668899999 776665554 45788888
Q ss_pred EcCC--C----e--EEEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 457 EVRR--C----Q--VVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 457 dl~~--~----~--~~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
++.. + + .+......+..-.++...+|.+-+++...| .|.+|+.. ++++....+ +...+++++
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l--------P~~~~t~~~ 261 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL--------PVKRPTNPA 261 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC--------CCCCCccce
Confidence 7762 1 1 222333445667788888888776555554 89999999 776654332 335678888
Q ss_pred EcCCCCCEEEEEECC
Q 004410 528 FSPSDPSKVIVTSAD 542 (755)
Q Consensus 528 fsp~d~~~l~s~s~D 542 (755)
|--.+.+.|++++..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 854355655555543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.95 Score=46.07 Aligned_cols=187 Identities=9% Similarity=0.042 Sum_probs=110.1
Q ss_pred CCEEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEEecC--CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHN--NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~~h~--~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
.-...+.|..++ .+-+.+.-| .|+.+|+.+++.+...... ..--.|+.. ++.++...=.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678887777 666666655 7999999999988776533 233444444 455555666789999999999888
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
+........-..++ .||+.|+.......++++|..+.+......+...+. .-..++-+.|. ++...+=.=...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~---pv~~LNELE~i--~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR---PVSNLNELEYI--NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE---E---EEEEEEE--TTEEEEEETTSS
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE---ECCCcEeEEEE--cCEEEEEeCCCC
Confidence 75555555666666 578889988888899999999888777766654432 22345556665 333333333344
Q ss_pred cEEEEECCcceeeEEEee-------------eccCCceEEEEEecCCCEEEEEe
Q 004410 544 LVRVLCGENVVGKFKASA-------------FRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~-------------~~~~~~v~~l~fspdg~~L~sgs 584 (755)
.|...|..+....-.... .......+.+++.|..+.|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444455444322211100 01134678999988776655544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.095 Score=45.59 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=71.1
Q ss_pred EEEEEEeeCCC---CEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 431 VTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 431 V~~i~fsp~d~---~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|++|++...++ +.|++|+.|..||+|+-. .++.-....+.|++++.... ..++.+..+|+|-+|+-....-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 67777765433 689999999999999865 45555566778888888776 578999999999999874332111
Q ss_pred eeEEecccccCCCCCeEEEEEcCCC---CCEEEEEECCCcEE
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSD---PSKVIVTSADSLVR 546 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d---~~~l~s~s~Dg~I~ 546 (755)
.....++++++...+ -..|++|=.+|.|-
T Consensus 78 ----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 ----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122446666665422 24678887777764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.7 Score=48.22 Aligned_cols=206 Identities=17% Similarity=0.102 Sum_probs=97.3
Q ss_pred cEEEEEEecCCCEEEEE-cCC----CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 286 SILTMKFSLDGQYLASG-GED----GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSg-s~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+..+.+||||++||.+ +.. ..|+|.|+.+++.+...-. ......+.|..++.. ++........... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~-~~y~~~~~~~~~~----~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKG-FFYTRFDEDQRTS----DS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSE-EEEEECSTTTSS-----CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCE-EEEEEeCcccccc----cC
Confidence 44567899999998865 333 3599999999977653211 111112444443332 2222222211100 00
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCC--CEEEEEEcCCC-eEE-EEeCC---CcEEEEeCCCC-----eEEEEEecC
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSS--EVLDLSWSKNG-FLL-SSSAD---KTVRLWQVGID-----RCLRVFSHN 428 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~--~V~~l~~s~~~-~L~-s~s~D---g~V~iWdl~s~-----~~~~~~~h~ 428 (755)
.....+..+...... ......+..... ....+..++++ +|+ ..... ..|.+.|+..+ .........
T Consensus 199 ~~~~~v~~~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 001111111111110 111122222222 26678899998 443 34333 34788888775 444444555
Q ss_pred CcEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCe----EEEeccCCcceEEEEEccCCCeEEEEe-CCC--cEEEEE
Q 004410 429 NYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGT-MTG--NCRFYD 498 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~----~~~~~~~~~~V~~v~~spdg~~la~gs-~dg--~I~iwD 498 (755)
..+....-+. .+.+++... ..+.|...++.... ...+..+...+.-..+...+.+|++.. .++ .|++|+
T Consensus 277 ~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 5555444444 455555443 23567777877654 223444444333333444555565544 344 388899
Q ss_pred CC
Q 004410 499 IK 500 (755)
Q Consensus 499 ~~ 500 (755)
+.
T Consensus 356 ~~ 357 (414)
T PF02897_consen 356 LD 357 (414)
T ss_dssp TT
T ss_pred CC
Confidence 98
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0095 Score=65.73 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=76.0
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. ++..++ +++|.| ||++++.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457789999988 99999999999999888 67777776 777777 999999 9999999999999999999998777
Q ss_pred Ee--ccCCcceEEEEEcc
Q 004410 465 DY--TDIREIVSAVCYCP 480 (755)
Q Consensus 465 ~~--~~~~~~V~~v~~sp 480 (755)
.- ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 53 44456677777753
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.5 Score=47.54 Aligned_cols=143 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred CcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeC--------------------CCcEEEEEcCCCeEE
Q 004410 409 KTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSI--------------------DGKVRIWEVRRCQVV 464 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~--------------------Dg~V~iwdl~~~~~~ 464 (755)
|.+.+.|-++.+.+.... ....-..+-+.| ..+.++|... ..+|.+||+.+.+.+
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 557788888877777764 244567788889 8888888642 357999999999998
Q ss_pred EeccCC---cceEEEEEccC--CCeEEEE-eCCCcE-EEEECCCCeEeeeeeEEecccccC-------------CCCCeE
Q 004410 465 DYTDIR---EIVSAVCYCPD--GKGGIVG-TMTGNC-RFYDIKDNQLYQQNQICLQGKKKL-------------PGKRIT 524 (755)
Q Consensus 465 ~~~~~~---~~V~~v~~spd--g~~la~g-s~dg~I-~iwD~~~~~~~~~~~~~~~~~~~~-------------~~~~I~ 524 (755)
+..+.. ..+..|.|..+ ..+-++| .-..+| ++|....+.-..+..+.+...... ...-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 766655 35667777654 3343333 334444 445546665444444444332110 124589
Q ss_pred EEEEcCCCCCEEEEEE-CCCcEEEEECCcc
Q 004410 525 GFQFSPSDPSKVIVTS-ADSLVRVLCGENV 553 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~ 553 (755)
.+.+|. |.++|.+.. .+|.|+-||+.+.
T Consensus 316 DI~iSl-DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 316 DILISL-DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEE-T-TS-EEEEEETTTTEEEEEE-SST
T ss_pred eEEEcc-CCCEEEEEcccCCcEEEEecCCC
Confidence 999999 556655554 6899999998874
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.7 Score=47.71 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=102.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC--------------------
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-------------------- 460 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-------------------- 460 (755)
++..-+.||++.+++-+.......+..---...+.|.+ ..+.|++++.+..|.-|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78888999999999987666555554433445577888 788899999888888886531
Q ss_pred CeEE--Ee-ccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE--EEcCCC
Q 004410 461 CQVV--DY-TDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF--QFSPSD 532 (755)
Q Consensus 461 ~~~~--~~-~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v--~fsp~d 532 (755)
++.+ .| ....+.+..|.... ....+++-+ ..++.+.+.. |.+....++.... ..-....+ ...|..
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~p----~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYNP----SCFCPYRVPWYNEPST 299 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCce----eeEEEEEeecccCCCC
Confidence 1111 11 22334444444333 223333333 3456666654 3444332221100 00001111 112222
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
...+++++.++++.||...+.....+. ....-.+.-..|..-...|++-+.+|.|.+-=+-+.
T Consensus 300 ~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 236999999999999986654433332 111112222233333457788888888877665443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.03 Score=60.66 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=98.5
Q ss_pred CCCE-EEEEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCCe-------EEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 440 DDNY-FISGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGKG-------GIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 440 d~~~-l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~~-------la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
+.++ |.++.....|+-.|++.|+++. |.-+.. |+-+.+.|+.+. -++|-.+..|.-||++-...- ...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eee
Confidence 3344 4456666789999999999995 544444 888888887542 366778899999999843321 000
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
..+++.........|++-. ...+|++|+.+|.||+||-..... +....+...+|..+..+.||++|++.+. ..+.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEecc-cEEE
Confidence 1223333333445555544 567999999999999999632222 2222566789999999999999887664 5666
Q ss_pred EEEcC
Q 004410 591 IWNYS 595 (755)
Q Consensus 591 iWd~~ 595 (755)
+-++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66654
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.49 Score=51.88 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=127.2
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
...+.+.+++ .+ ++-.....+..-+...........-. ..-..+++++...+.++....++.|.+.|..+..+....
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 3446666766 22 22222224555554422222212222 455678888833446666666799999998888877665
Q ss_pred cCCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE-EEECCC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI-VTSADS 543 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~Dg 543 (755)
........++++|+++.+.++.. ++++.+.|..++++...... + ..+ ..+++.| ++..++ +-..++
T Consensus 113 ~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v---G-----~~P-~~~a~~p-~g~~vyv~~~~~~ 182 (381)
T COG3391 113 PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV---G-----NTP-TGVAVDP-DGNKVYVTNSDDN 182 (381)
T ss_pred eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec---C-----CCc-ceEEECC-CCCeEEEEecCCC
Confidence 55557889999999988888766 68899999999888765221 1 122 8899999 666444 445889
Q ss_pred cEEEEECCcceeeEEEe---eeccCCceEEEEEecCCCEEEEEeCC---CcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVGKFKAS---AFRVAGSQMFATFTSDGKHVVSPSED---SNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~D---g~I~iWd~~~~~ 598 (755)
.|.+.|........ .. ..........+.++++|.++...... +.+.+.|..++.
T Consensus 183 ~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 183 TVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred eEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 99999966543332 11 12223344678899999977766544 588888888765
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.16 Score=58.69 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=100.2
Q ss_pred CCCCEEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-------
Q 004410 387 HSSEVLDLSWSKNG-FLLSSS------ADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------- 450 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s------~Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------- 450 (755)
....+...+.+|+| .++... .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence 33467889999999 554443 243 455556532 22 3332333488899999 87766665432
Q ss_pred -----CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEE---EECCCCeEeeeeeEEecccccCCCCC
Q 004410 451 -----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF---YDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 451 -----g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i---wD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+.+.+.++..+.... .....|..+.|+|||+.|+... +|.|++ -....+.........+. ......
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence 233333444433322 3456799999999999998866 577777 45445542211111111 112233
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEEC--CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCG--ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+..+.|.+ ++.+ +++..++...+|.. ....... .........+..++-+++ .|+.+..+|
T Consensus 499 ~~~l~W~~-~~~L-~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRT-GDSL-VVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEec-CCEE-EEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 57889998 5554 45555555555542 2111111 011112455666665552 455555555
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.85 Score=48.92 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=87.2
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee-CCCCEEEEEe----------------------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP-VDDNYFISGS---------------------- 448 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp-~d~~~l~sgs---------------------- 448 (755)
..+++++ .++-....+.|+-.|+.+.+...++. ....+-...|.. .++..++-.-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 3445555 55555556778888888887766665 455554556643 2444443321
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc-----EEEEECC--CCeEeeeeeEEecccccCCCC
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-----CRFYDIK--DNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-----I~iwD~~--~~~~~~~~~~~~~~~~~~~~~ 521 (755)
....|...|+.+++...+......+..+.|+|....+++=+..|- -+||-++ ...... +. ......
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~-----v~--~~~~~e 238 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK-----VH--RRMEGE 238 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE-----SS-----TTE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee-----ee--cCCCCc
Confidence 123466678888888777777788899999996555555444332 3566444 333221 11 112233
Q ss_pred CeEEEEEcCCCCCEEEE-EE-C---CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 522 RITGFQFSPSDPSKVIV-TS-A---DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s-~s-~---Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.+..=-|.| ++..|.- +. . +..|.-+|..+....... .. .....+-.++||++++-=+.|
T Consensus 239 ~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~---~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 239 SVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM---EM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EEEEE---EE--SEEEEEE-TTSSEEEEEE--
T ss_pred ccccccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCceEEE---eC-CceeeeEEcCCCCEEEecCCC
Confidence 455556788 5554433 32 2 224555666655443222 11 133455667899988765555
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.43 Score=55.05 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=109.4
Q ss_pred EEEEcCCCeEEEEeCC------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCc-----EEEEEcCCC
Q 004410 393 DLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-----VRIWEVRRC 461 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~D------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~-----V~iwdl~~~ 461 (755)
+++...+...++|+.| .++..||..+++....-.-...-..+.....++.+.++|+.||. |-.||..+.
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence 4555554477788887 46888998888765533211111222222237888999999974 677887766
Q ss_pred eEEEeccCCcceEEEEEc-cCCCeEEEEeCCC------cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYC-PDGKGGIVGTMTG------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~s-pdg~~la~gs~dg------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+-................ -+|+..++|+.++ .+..||..++.-...... .... ... +++.. ++.
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M--~~~R----~~~-g~a~~--~~~ 477 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM--NTRR----SGF-GVAVL--NGK 477 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc--cccc----ccc-eEEEE--CCE
Confidence 544333222233333222 2778888888654 478899988765432221 1111 111 13332 668
Q ss_pred EEEEEECCCc-----EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCC
Q 004410 535 KVIVTSADSL-----VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN-----IYIWNYSNQD 598 (755)
Q Consensus 535 ~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~-----I~iWd~~~~~ 598 (755)
++++|+.|+. |..||..+...............+. + ..-+++..+.|+.||. |-.||..+.+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-V-VVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-E-EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 8888887763 6667776654444332121222221 1 2236778888888764 6667665554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.4 Score=47.03 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=114.2
Q ss_pred eeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC---------
Q 004410 241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--------- 306 (755)
Q Consensus 241 ~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg--------- 306 (755)
..++|+|+++|.+ +....++|+|+.++..... .+..-. -..+.|.+|++.|+....+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d------~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD------GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE------EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC------cccccc--cceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 6789999988865 2234599999887632111 111111 12399999988776664333
Q ss_pred --cEEEEEccCCeee--eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 307 --TVRVWKVIEHERL--DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 307 --~I~vWdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
.|+.|.+.+...- ..+.........+..........+.+....... ...+.+.+............
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~----------~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS----------ESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS----------EEEEEEEECCCTTTSS-SEE
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc----------CCeEEEEeccccCCCcCCcE
Confidence 3777777665432 112222221112222222222222221111111 12222222221100011222
Q ss_pred EecCCCCCE-EEEEEcCCC-eEEEEe---CCCcEEEEeCCCCe---EE-EEEecCCc--EEEEEEeeCCCCEEEEEeCCC
Q 004410 383 EFQGHSSEV-LDLSWSKNG-FLLSSS---ADKTVRLWQVGIDR---CL-RVFSHNNY--VTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 383 ~~~gh~~~V-~~l~~s~~~-~L~s~s---~Dg~V~iWdl~s~~---~~-~~~~h~~~--V~~i~fsp~d~~~l~sgs~Dg 451 (755)
.+..+...+ ..+... .+ +++... ..+.|...++.... .. ..+.+... +..+... .+.+++....++
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECC
Confidence 333333333 333333 44 333222 23566667777654 22 34456553 4444432 344555555555
Q ss_pred --cEEEEEcC-CCeEEEecc-CCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEee
Q 004410 452 --KVRIWEVR-RCQVVDYTD-IREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 452 --~V~iwdl~-~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~ 506 (755)
.|+++++. +........ ..+.|..+...+++..+..... -++++.||+.+++...
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 48899999 554443332 3344666666666665544322 3568889999887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0079 Score=40.21 Aligned_cols=36 Identities=36% Similarity=0.771 Sum_probs=31.6
Q ss_pred cceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEe
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQ 415 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWd 415 (755)
++..+..|...|.++.|++.+ .+++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667899999999999987 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.6 Score=44.38 Aligned_cols=189 Identities=13% Similarity=0.133 Sum_probs=113.4
Q ss_pred cEEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 286 SILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
-...+.|..+|.++-+.|.-| .|+.+|+.+++.......+...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------------------------------- 90 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------------------------------- 90 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------------------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----------------------------------
Confidence 455788878899889988777 7999999998866544332110
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~ 443 (755)
|. . -+.-+.+.+..|.| .++...+||..+-+.+..+.....=..++ . ++..
T Consensus 91 ----------Fg---E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~-dg~~ 141 (264)
T PF05096_consen 91 ----------FG---E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--S-DGKR 141 (264)
T ss_dssp -----------E---E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEE--E-CSSC
T ss_pred ----------cc---e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEE--c-CCCE
Confidence 00 0 00111233444444 56888999999999999998766667777 3 6667
Q ss_pred EEEEeCCCcEEEEEcCCCeEEE---eccCCc---ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec-cc-
Q 004410 444 FISGSIDGKVRIWEVRRCQVVD---YTDIRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ-GK- 515 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~---~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~-~~- 515 (755)
|+.......|+++|..+.+.+. ...... .++-+.|- +|...|=.=....|...|..+|+........-. ..
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 7777667889999988765442 222222 34455664 666666666677888899999988765432110 00
Q ss_pred -----ccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 -----KKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 -----~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......-.+++++.|..+.++++|
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 111234589999999555555555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.15 E-value=2.4 Score=46.07 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=65.1
Q ss_pred CCCcEEEEeCCCCeEEEEEecC---CcEEEEEEeeC-CCC-EEEEEeCCCcEEEEEc-CCC-----eEEEecc-------
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPV-DDN-YFISGSIDGKVRIWEV-RRC-----QVVDYTD------- 468 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~-d~~-~l~sgs~Dg~V~iwdl-~~~-----~~~~~~~------- 468 (755)
.-.++.+||+.+.+.++++... ..+..|.|... +.. -|+.+....+|..|-- ..+ ++++...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4478999999999999999643 34667777541 222 3555555666665544 333 2222211
Q ss_pred ---C-------CcceEEEEEccCCCeEEEEe-CCCcEEEEECCCC-eEeeeeeEEeccccc------CCC----CCeEEE
Q 004410 469 ---I-------REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDN-QLYQQNQICLQGKKK------LPG----KRITGF 526 (755)
Q Consensus 469 ---~-------~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~-~~~~~~~~~~~~~~~------~~~----~~I~~v 526 (755)
. ..-|+.|.+|.|.++|.+.+ ..|.|+.||+.+. +.....++.+.+... ..+ +...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 1 34589999999999998866 4899999999863 333333443333221 111 123556
Q ss_pred EEcCCCCCEEEEE
Q 004410 527 QFSPSDPSKVIVT 539 (755)
Q Consensus 527 ~fsp~d~~~l~s~ 539 (755)
+.|- |++.|.++
T Consensus 380 qlS~-DGkRlYvT 391 (461)
T PF05694_consen 380 QLSL-DGKRLYVT 391 (461)
T ss_dssp EE-T-TSSEEEEE
T ss_pred EEcc-CCeEEEEE
Confidence 6776 55555544
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.22 Score=57.49 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=97.9
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..++.....-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55566643 347788988776533221 11111122222 678888888764 4788998876544333
Q ss_pred cCCcceEEE-EEccCCCeEEEEeCCC-----------------------cEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 468 DIREIVSAV-CYCPDGKGGIVGTMTG-----------------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 468 ~~~~~V~~v-~~spdg~~la~gs~dg-----------------------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
......... +..-+|+..++|+.++ .+..||..+++-..... .......
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~------m~~~r~~- 456 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN------FWTGTIR- 456 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC------CCccccc-
Confidence 222221111 1123677778887653 47788888765432111 0001111
Q ss_pred EEEEEcCCCCCEEEEEECC------CcEEEEECCc-ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC--cEEEEEc
Q 004410 524 TGFQFSPSDPSKVIVTSAD------SLVRVLCGEN-VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS--NIYIWNY 594 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~D------g~I~iwd~~~-~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg--~I~iWd~ 594 (755)
.+++.. ++.+.++|+.+ ..+..||..+ ..................++ -+|+..++|+.|| .+-.||.
T Consensus 457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCc
Confidence 112222 55677777654 2356788775 33333222121222222222 3788899999888 6778887
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+.+
T Consensus 533 ~~~~ 536 (557)
T PHA02713 533 YTYE 536 (557)
T ss_pred cccc
Confidence 7766
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=45.66 Aligned_cols=168 Identities=10% Similarity=0.149 Sum_probs=112.1
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.|-...|.++.|+|+. .|++......-.||=-..|+.++++. .-.....|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445559999999998 77777777777777777899988885 233345566765 6777777777888888877654
Q ss_pred e-EE-------E--eccC-CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe--cccccCCCCCeEEEEE
Q 004410 462 Q-VV-------D--YTDI-REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL--QGKKKLPGKRITGFQF 528 (755)
Q Consensus 462 ~-~~-------~--~~~~-~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~--~~~~~~~~~~I~~v~f 528 (755)
. ++ . ...+ ......++|.|....|+++-...-+.||.+............. .......-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 11 1 1122 4567889999999999999888888888776433111111100 0001112346788999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcc
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
++..+.+++.+..++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9877778888888888777776543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.015 Score=56.71 Aligned_cols=141 Identities=17% Similarity=0.022 Sum_probs=72.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
.+...+.||.|+-++++..+.. ....+... .....-+..+++|+.+|.|++|.......... ......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH-------hhhccc
Confidence 3445567888888887764432 11111111 11222456899999999999998872211110 000111
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC-CceEEEEEecCCCEEEEE--eCCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA-GSQMFATFTSDGKHVVSP--SEDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~v~~l~fspdg~~L~sg--s~Dg~I~iWd~~ 595 (755)
..|-++.-.-.++.+.++++.||.|+.|+.......-.. ..|. .++..+..+..+++|+.+ |.|..++.|++.
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~--g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV--GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeee--ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 223222222235568999999999999987653322222 2233 233333333344444444 444444444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.7 Score=44.43 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=103.0
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+.+-...|.++.|+|+.+.|++......-.||=..+|+.+..+....
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--------------------------------- 127 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--------------------------------- 127 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---------------------------------
Confidence 45556669999999999999999988888888777787776654321
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEE----------EEec-
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR----------VFSH- 427 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~----------~~~h- 427 (755)
-...-.+.|..+| +.++--.++.+.++.+..+.... ...+
T Consensus 128 ----------------------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~ 179 (316)
T COG3204 128 ----------------------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKK 179 (316)
T ss_pred ----------------------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCC
Confidence 1112235565555 44444456666666554332111 1113
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EE---EeccC-------CcceEEEEEcc-CCCeEEEEeCCCcEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV---DYTDI-------REIVSAVCYCP-DGKGGIVGTMTGNCR 495 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~---~~~~~-------~~~V~~v~~sp-dg~~la~gs~dg~I~ 495 (755)
+.....++|.| .+..|+.+-.-.-+.||.+.... .. ....+ -..|.++.|++ .+.+++.+..++.+.
T Consensus 180 N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 180 NKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLL 258 (316)
T ss_pred CcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEE
Confidence 66788999999 66667777777777777765432 11 11111 23467788987 456666677777788
Q ss_pred EEECCCCe
Q 004410 496 FYDIKDNQ 503 (755)
Q Consensus 496 iwD~~~~~ 503 (755)
-.|....-
T Consensus 259 Evd~~G~~ 266 (316)
T COG3204 259 EVDLSGEV 266 (316)
T ss_pred EEecCCCe
Confidence 88877653
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.3 Score=50.67 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=116.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcE---------EEEEEee---------------CCCCEEEEEeCCCcEE
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV---------TSVAFNP---------------VDDNYFISGSIDGKVR 454 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V---------~~i~fsp---------------~d~~~l~sgs~Dg~V~ 454 (755)
++.|..++.++.|.-.|..+++.+-.+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788888999999999888777532221 1122221 1345788899999999
Q ss_pred EEEcCCCeEEEeccCCcce-------------EEEEEcc--CCCeEEEEeC----------CCcEEEEECCCCeEeeeee
Q 004410 455 IWEVRRCQVVDYTDIREIV-------------SAVCYCP--DGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V-------------~~v~~sp--dg~~la~gs~----------dg~I~iwD~~~~~~~~~~~ 509 (755)
-.|.++++.+........| ..+.-.| .+..+++|+. +|.|+-||.++++++..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 9999999887433332222 1112222 2346666643 6889999999999987654
Q ss_pred EEecccc--------cC-CCCCe-EEEEEcCCCCCEEEEEE------------------CCCcEEEEECCcceeeEEEee
Q 004410 510 ICLQGKK--------KL-PGKRI-TGFQFSPSDPSKVIVTS------------------ADSLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 510 ~~~~~~~--------~~-~~~~I-~~v~fsp~d~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~~ 561 (755)
....... -. ....+ ..+++.| ...+++... ..+.|.-.|..+.+.+.....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 3110000 00 00111 2344444 333333322 124455566766666665543
Q ss_pred eccCC-------ceEEEEEec-CCC---EEEEEeCCCcEEEEEcCCCCcc
Q 004410 562 FRVAG-------SQMFATFTS-DGK---HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 562 ~~~~~-------~v~~l~fsp-dg~---~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..|.- ...-+.+.. +|+ .|+.++.+|.+++.|-.+++.+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 33321 111222333 664 7999999999999999999844
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.7 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=41.6
Q ss_pred CCCeEEEEEcCC------CCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 520 GKRITGFQFSPS------DPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 520 ~~~I~~v~fsp~------d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...++.+.|... .+.++++.-..+.|............ ..........+..+++.|||.++++...+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 356777777642 23455555556677777765332221 111123344799999999999999988899886
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.35 Score=52.80 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=93.8
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-------EEEEEeCCCcEEEEEcCCCe--EEEe-----
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-------YFISGSIDGKVRIWEVRRCQ--VVDY----- 466 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-------~l~sgs~Dg~V~iwdl~~~~--~~~~----- 466 (755)
.|.++.....|+-.|++.|+.+..+.....|+-+.+.| +.. .-+.|-.|..|.-||.+-.. .+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 55667777889999999999999998666688888888 432 23456678899999987422 1211
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
........|++-..+| +|++|+.+|.|++||--..... ...+.-+..|+.+..+. ++.+|+.++. ..+.
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK--------TAlPgLG~~I~hVdvta-dGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK--------TALPGLGDAIKHVDVTA-DGKWILATCK-TYLL 495 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh--------hcccccCCceeeEEeec-cCcEEEEecc-cEEE
Confidence 1223345666666665 8899999999999997322211 11334567899999998 8888776654 4444
Q ss_pred EEE
Q 004410 547 VLC 549 (755)
Q Consensus 547 iwd 549 (755)
+.+
T Consensus 496 Li~ 498 (644)
T KOG2395|consen 496 LID 498 (644)
T ss_pred EEE
Confidence 444
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.56 E-value=2 Score=49.31 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCC--cEEE----------EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNN--YVTS----------VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~--~V~~----------i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
++.|+.++.++.|+-.|..+++.+-.+.... .+.. +++ .+..++.++.|+.|.-.|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577777888899999999999887765321 1111 122 235677788999999999999998733
Q ss_pred ccCCcc--eEEEEEcc--CCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccc--------------------
Q 004410 467 TDIREI--VSAVCYCP--DGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKK-------------------- 516 (755)
Q Consensus 467 ~~~~~~--V~~v~~sp--dg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~-------------------- 516 (755)
...... -..+.-+| .+..++++.. +|.|.-+|..+++.+...........
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 221110 01111122 1235555543 68999999999998765443211100
Q ss_pred ---cCCCCCeE-EEEEcCCCCCEEEEEECC-----C-----------cEEEEECCcceeeEEEeeeccCC-------ceE
Q 004410 517 ---KLPGKRIT-GFQFSPSDPSKVIVTSAD-----S-----------LVRVLCGENVVGKFKASAFRVAG-------SQM 569 (755)
Q Consensus 517 ---~~~~~~I~-~v~fsp~d~~~l~s~s~D-----g-----------~I~iwd~~~~~~~~~~~~~~~~~-------~v~ 569 (755)
...+..+. .+.+.| ...+|+.+... + .|.-.|..+.+.+.......|.. ...
T Consensus 226 ~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00111222 346666 44555555422 2 45566777776666655444432 112
Q ss_pred EEEEecCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 004410 570 FATFTSDGK---HVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 570 ~l~fspdg~---~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
-+.+..+|+ .|+.+..+|.+++.|-.+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 233335776 7889999999999999999854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.38 E-value=4.8 Score=44.23 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=34.5
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+.+....+.+|+.+|++++.|+...-|.|.++|+..+..+..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm 344 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM 344 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh
Confidence 344455689999999999999988889999999998876653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=2.4 Score=41.82 Aligned_cols=143 Identities=13% Similarity=0.200 Sum_probs=88.0
Q ss_pred CCCEEEEEEcCCCeEEEEeCC----------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEE
Q 004410 388 SSEVLDLSWSKNGFLLSSSAD----------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIW 456 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~D----------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iw 456 (755)
.....+-..+|+|.+..|.+. |.++.|-+. ++....+..-.--+.++|+. +.+ +.++-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccc-cCcEEEEEccCceEEeee
Confidence 345566677888844555432 445555432 22222333333446788886 544 45566777888778
Q ss_pred E--cCCCeEE------Eecc----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 457 E--VRRCQVV------DYTD----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 457 d--l~~~~~~------~~~~----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
| ..++.+. .+.. ..-..-.++...+|++.++.-..|+|..+|..+++.++++.+ +..+|+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl--------Pt~qit 257 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL--------PTPQIT 257 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc--------CCCceE
Confidence 7 5555432 2222 111233455667888888888899999999999999887654 356899
Q ss_pred EEEEcCCCCCEEEEEE
Q 004410 525 GFQFSPSDPSKVIVTS 540 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s 540 (755)
+++|--.+-..+++..
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 9999653334444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.42 Score=55.24 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=87.3
Q ss_pred CcEEEEEEeeCCCCEEEEEe------CCC--cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEEC
Q 004410 429 NYVTSVAFNPVDDNYFISGS------IDG--KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDI 499 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs------~Dg--~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~ 499 (755)
..+...+++| +++.++... .|. .|.+++.... ...+... ...+.-.|+|||..|++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999 888776654 243 4666665332 2333222 23788999999998888764322 333332
Q ss_pred CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE---EECCcceeeE---EEeeeccCCceEEEEE
Q 004410 500 KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV---LCGENVVGKF---KASAFRVAGSQMFATF 573 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i---wd~~~~~~~~---~~~~~~~~~~v~~l~f 573 (755)
.....+....+.-..........|..+.|+| |+..|+... ++.|.| -........+ ..........+.++.|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2111111001000000002245799999999 777777655 467776 3322222122 1111223334688999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..++.++ .+..++...+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEe
Confidence 9998855 55555555555544
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.99 E-value=2 Score=44.12 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred CEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE-cCCCe--EE
Q 004410 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQ--VV 464 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd-l~~~~--~~ 464 (755)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68889999999 555444 23333344333333333332444788889999 777777777677777774 33332 22
Q ss_pred --EeccCCcceEEEEEccCCCeEEEEe---CCCcEEEEECC---CC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 465 --DYTDIREIVSAVCYCPDGKGGIVGT---MTGNCRFYDIK---DN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 465 --~~~~~~~~V~~v~~spdg~~la~gs---~dg~I~iwD~~---~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.+......|+++.++|||..++... .++.|.+--+. .+ ........ .........++.+.|.+ +..+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~---~~~~~~~~~v~~v~W~~-~~~L 179 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR---RVAPPLLSDVTDVAWSD-DSTL 179 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce---EecccccCcceeeeecC-CCEE
Confidence 2333333899999999999998866 34667766543 22 11110000 11112356899999998 6666
Q ss_pred EEEEECCC
Q 004410 536 VIVTSADS 543 (755)
Q Consensus 536 l~s~s~Dg 543 (755)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 66555433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.62 Score=47.16 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=42.3
Q ss_pred eeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 241 ~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
-.|||||.+|...-. -|.|-|||...... ..-++..|.-.-..|.|.+||+.|+.+.
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq------rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccc------eecccccCCcCcceeEEecCCcEEEEeC
Confidence 579999999987543 37799999764322 2335566766677899999999998874
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.94 E-value=5.9 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred CCCCCEEEEEEcCCC----eEEEEeCCCcEEEEeCCC
Q 004410 386 GHSSEVLDLSWSKNG----FLLSSSADKTVRLWQVGI 418 (755)
Q Consensus 386 gh~~~V~~l~~s~~~----~L~s~s~Dg~V~iWdl~s 418 (755)
.+...|..+.|+|.+ +|+.-..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 445689999999963 899999999999999964
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.92 E-value=11 Score=44.78 Aligned_cols=176 Identities=14% Similarity=0.187 Sum_probs=108.9
Q ss_pred cEEEEeCCCCeEEEEEe--cCC---cEEEEEEeeCCCCEEEEEeC----------CCcEEEEEcCCC-e--EEEeccCCc
Q 004410 410 TVRLWQVGIDRCLRVFS--HNN---YVTSVAFNPVDDNYFISGSI----------DGKVRIWEVRRC-Q--VVDYTDIRE 471 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~--h~~---~V~~i~fsp~d~~~l~sgs~----------Dg~V~iwdl~~~-~--~~~~~~~~~ 471 (755)
.++++|-.+.+.+.... ... .|.+..|..+.+.++++|.. .|.|.|+..... + .+.....++
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 37777877776665543 222 34445587633677887752 477888877662 2 222333344
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+.++..- +|+++| +-...|++|+..+.+.+.. ...+...+..+...- .+..+++|.--+.+.+....
T Consensus 831 av~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~--------e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA--GINQSVRLYEWTTERELRI--------ECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ceeehhhh-CCeEEE--ecCcEEEEEEccccceehh--------hhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEe
Confidence 55554431 555544 4567899999988854431 223445677777776 78899999988888876655
Q ss_pred cceeeEEEee-eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 552 NVVGKFKASA-FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 552 ~~~~~~~~~~-~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....+.... .-+...++++.+-. +..++.+-.+|.+++-..++.-
T Consensus 899 ~~eg~f~evArD~~p~Wmtaveil~-~d~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 899 GDEGNFEEVARDYNPNWMTAVEILD-DDTYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred ccCCceEEeehhhCccceeeEEEec-CceEEeecccccEEEEEecCCC
Confidence 4443333211 23566777777764 4556667788999988877544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.72 Score=51.28 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCeEEEeccCCcceEEEEEccC----CCeEEEEeCCCcEEEEECC
Q 004410 428 NNYVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD----GKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~ 500 (755)
-.+|..++|. ||+.++-.. .+|.+++=| .. ..+.-+.|..++|.|- -..+++.-....|.||.+.
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SK---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCC---cc---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3567888886 455544322 122222211 11 2334466899999994 3356666778899999886
Q ss_pred C-----CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 501 D-----NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 501 ~-----~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
- ++++.. +.+-.+ ..-.---.++.|+| ....|++-.....-.+++.+......+.. ....+.|.+.||.+
T Consensus 91 ~s~~e~~K~l~s-QtcEi~--e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaD-i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 91 PSTTERNKLLMS-QTCEIR--EPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKAD-IKTSGLIHCACWTK 165 (671)
T ss_pred cCccccccceee-eeeecc--CCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEe-ccCCceEEEEEecC
Confidence 2 222211 111100 00011224678999 66666666655554555554433333333 35678999999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcC
Q 004410 576 DGKHVVSPSE-DSNIYIWNYS 595 (755)
Q Consensus 576 dg~~L~sgs~-Dg~I~iWd~~ 595 (755)
||+.|+.+-. .=.-||||-.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 9998876643 3357888854
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.18 Score=59.64 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=84.3
Q ss_pred ceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeee-eEEecccc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQN-QICLQGKK--KLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~-~~~~~~~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.|..+...+|+...++..... .|..||++.-..-... ...+..+. ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455666667777666544333 6899999854332210 01111111 122344677899997777888999999999
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|..+......... ......+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 182 V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 9877654444333 455678899999999999999999999999987654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.4 Score=50.73 Aligned_cols=185 Identities=8% Similarity=0.038 Sum_probs=90.9
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEec--CCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..+++....-.. ...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 55555543 2577889887776433221 111112222 2 67788888876 34778888776544322
Q ss_pred cCCcce-EEEEEccCCCeEEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 468 DIREIV-SAVCYCPDGKGGIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 468 ~~~~~V-~~v~~spdg~~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
....+. ...+..-+++..+.|+.+ ..+..||+.+++-..... ........ +++.. ++..++.|+
T Consensus 375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~------~p~~r~~~-~~~~~--~~~iyv~GG 445 (534)
T PHA03098 375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP------LPISHYGG-CAIYH--DGKIYVIGG 445 (534)
T ss_pred CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC------CCccccCc-eEEEE--CCEEEEECC
Confidence 221111 111122366777777632 358899988765432111 01011111 12222 456666665
Q ss_pred CCC--------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 541 ADS--------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg--------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
.+. .+.+||..+............... ..++ .-+++.++.|+.+ +.|.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 432 377788765433222111101111 1122 2367777777754 467788877654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.072 Score=38.81 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.0
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
..|.+++|+|...+||.+..+|.|.|+.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 46999999999999999999999999998 544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.15 Score=37.19 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.7
Q ss_pred cCCcceEEEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.....|..++|+|...+||+|+.+|.|.+|.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 445679999999999999999999999999994
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.20 E-value=9.9 Score=41.42 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=56.2
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCC-----eE---EEEEec-----CCcEEEEEEeeCCCCEEEEEeCC------
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGID-----RC---LRVFSH-----NNYVTSVAFNPVDDNYFISGSID------ 450 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~-----~~---~~~~~h-----~~~V~~i~fsp~d~~~l~sgs~D------ 450 (755)
....|++.+++ |+.+.....+++.|.... +. +..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45678888888 444444443334454321 21 112221 34577899999 88877654421
Q ss_pred -------------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEe
Q 004410 451 -------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 451 -------------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs 489 (755)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 445566666555443333333456899999998876643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.25 Score=58.24 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
....++.|+..|.|...|+...-. .+-.....+|++++|+.+|+.++.|-.+|.|.+||+..++..+.+... .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 456788899899999988877422 233345678999999999999999999999999999998877653321 1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
.+...+..+.+.. ++..++++...|.
T Consensus 173 ap~t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred CccceEEEEEEeC-CCcEEEEccCCCc
Confidence 1122233333333 4446666666665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.4 Score=50.83 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=107.2
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-C-----cEEEEEcCCCeEEEe
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-G-----KVRIWEVRRCQVVDY 466 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-g-----~V~iwdl~~~~~~~~ 466 (755)
.++.|+.+ ..+..||..+++...... ....-.++++. ++.++++|+.| | .+..||..+.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 55666665 468889988885554432 44445556655 46888999999 3 577888888774443
Q ss_pred ccCCcceEEEEEc-cCCCeEEEEeCCCc-----EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 467 TDIREIVSAVCYC-PDGKGGIVGTMTGN-----CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 467 ~~~~~~V~~v~~s-pdg~~la~gs~dg~-----I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......-..+... -+|...|+|+.||. +-.||..+.+-..... . . ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~------m--~-~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP------M--L-TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC------C--C-cceeeeEEEEECCEEEEEcC
Confidence 3322222222222 27888899999875 7788888765432111 1 1 12233333333778888888
Q ss_pred CCC------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCC
Q 004410 541 ADS------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN-----IYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~-----I~iWd~~~~~ 598 (755)
.++ .+..||..+................. ++ .-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 45667766654444332121111111 22 246788888887763 6667766554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.74 E-value=3 Score=37.71 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=75.6
Q ss_pred eEEEEeCCCcEEEEeCC--------CCeEEEEEecCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSADKTVRLWQVG--------IDRCLRVFSHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~--------s~~~~~~~~h~~~V~~i~fsp~----d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|++++.-++|.|.+.. ....+..+.-+..|++|+-.+- ..+.|+.|+ ...|..||+....-+.+..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 78888888999999865 3345677778888999976653 345666665 5679999999988888888
Q ss_pred CCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 469 IREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 469 ~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
..+.|.++.+-.- ..-++..+.+-.|.-||....+...
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 8888888887541 2234444446667777777666543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=9.3 Score=39.19 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=104.5
Q ss_pred EEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEE
Q 004410 421 CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497 (755)
Q Consensus 421 ~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iw 497 (755)
.+..+...+.+..+.++ +++...+..+.-++|.|+.+.... ......+.-. .+.-.|+++.++..+.-+.++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEE
Confidence 34444566677778875 478888888889999999875433 2222223333 344478899999988888899
Q ss_pred ECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEeeeccCCceEEEEEecC
Q 004410 498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspd 576 (755)
|+.+....+ +.+........-..++.+ +++..++..|+-+.|.|..+... .+... ......+.++..+++
T Consensus 154 dvsdpssP~-----lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdn 224 (370)
T COG5276 154 DVSDPSSPQ-----LAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDN 224 (370)
T ss_pred ECCCCCCce-----eeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCC
Confidence 998755432 333333344444566664 47777888999999999887543 33332 222336778888777
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
--|++... --+.+-|.++.+
T Consensus 225 r~y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 225 RAYLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred eeEEEEcc--cceEEEecCCCC
Confidence 66666553 457777777655
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.29 Score=57.98 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=92.4
Q ss_pred CEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeE--------EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 390 EVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRC--------LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 390 ~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~--------~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
.|..+...+|+ .++..+.+-.|..||+++-.. ++.- .......++.|+|.-...++....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34445555565 333444455788899864321 1111 14456788999996566678888899999
Q ss_pred EEEcCCCe-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 455 IWEVRRCQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 455 iwdl~~~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+..+.... .+.........++++|+|.|+.+++|-..|++.-|-..-..... +.........+|.+|+|.. ..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-----ip~Pp~~e~yrvl~v~Wl~-t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-----IPEPPVEENYRVLSVTWLS-TQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-----ccCCCcCCCcceeEEEEec-ce
Confidence 88776433 23445667789999999999999999999999988765332111 1111112257899999986 33
Q ss_pred CEEEE
Q 004410 534 SKVIV 538 (755)
Q Consensus 534 ~~l~s 538 (755)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 44443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.49 E-value=3 Score=42.85 Aligned_cols=149 Identities=18% Similarity=0.083 Sum_probs=86.6
Q ss_pred cEEEEEEeeCCCCEEEEEe---CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE-CCCCeEe
Q 004410 430 YVTSVAFNPVDDNYFISGS---IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD-IKDNQLY 505 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs---~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD-~~~~~~~ 505 (755)
.+.+.++++ +++.++... ....|+++.......... ....++.-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 777766554 233455555443322222 334788889999988777777677767664 3333322
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECC---cc-eeeE---EEeeeccCCceEEEEEec
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGE---NV-VGKF---KASAFRVAGSQMFATFTS 575 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~---~~-~~~~---~~~~~~~~~~v~~l~fsp 575 (755)
. ..+... .....|+.+.++| |+..++... .++.|.|--+. .. ...+ ..........++.+.|.+
T Consensus 102 ~-~~v~~~----~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 P-VEVDWP----GLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e-EEeccc----ccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 1 111111 0111899999999 776666554 34666665322 11 1111 111112346789999999
Q ss_pred CCCEEEEEeCCC
Q 004410 576 DGKHVVSPSEDS 587 (755)
Q Consensus 576 dg~~L~sgs~Dg 587 (755)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.2 Score=49.58 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=75.3
Q ss_pred CCCCCEEEEEEcCCC-----eEEEEeCCCcEEEEeCC-----CCeEEEEE--e----cCCcEEEEEEeeCCCCEEEEEeC
Q 004410 386 GHSSEVLDLSWSKNG-----FLLSSSADKTVRLWQVG-----IDRCLRVF--S----HNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-----~L~s~s~Dg~V~iWdl~-----s~~~~~~~--~----h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
|.-..|..+.|.|-+ .|++....+.|.||.+. +++.+... . ..---..+.|+| ....|++-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568999999853 68888889999999875 23332222 1 111235578999 7777776665
Q ss_pred CCcEEEEEcCC--CeEEEeccCCcceEEEEEccCCCeEEEEeCC-CcEEEEECC
Q 004410 450 DGKVRIWEVRR--CQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIK 500 (755)
Q Consensus 450 Dg~V~iwdl~~--~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~ 500 (755)
...-.+++++. .++..-....+.|.|.||.+||+.|+++-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 55545566653 3344334677889999999999998876543 235677653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.6 Score=55.17 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=69.8
Q ss_pred eEEEEeCCCcEEEEeCCCCeE--EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccCCcc---eE
Q 004410 401 FLLSSSADKTVRLWQVGIDRC--LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDIREI---VS 474 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~--~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~~~---V~ 474 (755)
.++.|+..|.|-..|+...-+ .......++|++++|+. ++..++.|-.+|.|.+||+..+++.+ +..+..+ |.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 677788888888888765422 22223678999999998 99999999999999999999987764 3333333 34
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4445556667888877776 55543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.01 E-value=14 Score=38.96 Aligned_cols=155 Identities=13% Similarity=0.189 Sum_probs=76.4
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC-CCCeE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI-KDNQL 504 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~-~~~~~ 504 (755)
....+..+...+ ++.+++++..-..+.-||--...-. .-......|.++.|.|++.+.++ ...|.|++=+. .....
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 457788888888 8998888876666667876543222 33445678999999999776665 48888888772 22222
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee--eccCCceEEEEEecCCCEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA--FRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~v~~l~fspdg~~L~s 582 (755)
..+ ... ........+..++|.+ +....++ +..|.+.+= .+.-...+... .......+.+.|..+. .-+.
T Consensus 221 w~~---~~~-~~~~~~~~~ld~a~~~-~~~~wa~-gg~G~l~~S--~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~ 291 (302)
T PF14870_consen 221 WSE---PII-PIKTNGYGILDLAYRP-PNEIWAV-GGSGTLLVS--TDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV 291 (302)
T ss_dssp E------B--TTSS--S-EEEEEESS-SS-EEEE-ESTT-EEEE--SSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred ccc---ccC-CcccCceeeEEEEecC-CCCEEEE-eCCccEEEe--CCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence 111 011 1122345589999998 5555554 444544331 11112222211 2345568888997664 4445
Q ss_pred EeCCCcEEEE
Q 004410 583 PSEDSNIYIW 592 (755)
Q Consensus 583 gs~Dg~I~iW 592 (755)
-+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 5578887665
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.6 Score=44.52 Aligned_cols=182 Identities=9% Similarity=0.055 Sum_probs=92.8
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEEeccCCc
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~~~~~~~ 471 (755)
.++.|+.+ .++..||..+++....-. ....-.+++ .- ++.+.+.|+.++ .+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 55666654 357788888776544332 111111222 22 677888887643 57888877665443333322
Q ss_pred ceEE-EEEccCCCeEEEEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 472 IVSA-VCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~-v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
.... ....-+|+..++|+.++ .+..||..++.-..... ..........+.+ ++...+.| |.+.+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~------m~~~r~~~~~~~~---~~~IYv~G---G~~e~ 419 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS------TYYPHYKSCALVF---GRRLFLVG---RNAEF 419 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC------CCCccccceEEEE---CCEEEEEC---CceEE
Confidence 2211 12223777778877654 47788888765432111 1111111122222 55666666 35677
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
||..+..-............ .+++ .-+|+..+.||.+ ..|..||..+.+
T Consensus 420 ydp~~~~W~~~~~m~~~r~~-~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDN-PELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEcCCCCCCccc-cEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88765443332211111111 1222 2477888888754 346677776654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.61 E-value=23 Score=42.37 Aligned_cols=158 Identities=12% Similarity=0.074 Sum_probs=89.8
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE-------------EEEEee-CCCCEEEEEeC----------CCcEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT-------------SVAFNP-VDDNYFISGSI----------DGKVRI 455 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~-------------~i~fsp-~d~~~l~sgs~----------Dg~V~i 455 (755)
+.++.++.|+.|.-.|.++|+.+..|..++.|. .+.-.| ..++.++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 377888889999999999999988775444331 011111 02345666643 688999
Q ss_pred EEcCCCeEEE-eccC---------Cc--------ce-EEEEEccCCCeEEEEeC------------------CCcEEEEE
Q 004410 456 WEVRRCQVVD-YTDI---------RE--------IV-SAVCYCPDGKGGIVGTM------------------TGNCRFYD 498 (755)
Q Consensus 456 wdl~~~~~~~-~~~~---------~~--------~V-~~v~~spdg~~la~gs~------------------dg~I~iwD 498 (755)
+|.++++++- +... .+ .+ ..+++.+....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999998872 2110 00 01 23455555555544332 23455667
Q ss_pred CCCCeEeeeeeEEeccccc--CCC-CCeEEEEEcCCCC---CEEEEEECCCcEEEEECCcceeeEEE
Q 004410 499 IKDNQLYQQNQICLQGKKK--LPG-KRITGFQFSPSDP---SKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~--~~~-~~I~~v~fsp~d~---~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
+++++....++........ ... ..+..+. ..++ ..++.++.+|.+.++|..+.+.....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~--~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP--DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeee--cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7777776544431111000 001 1111222 1133 37888999999999998886655543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.50 E-value=4.3 Score=44.29 Aligned_cols=151 Identities=12% Similarity=0.090 Sum_probs=78.2
Q ss_pred CcEEEEEEeeCCCCEEEEEe-----------CCC-cEEEEEcCC--Ce---EEEeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 429 NYVTSVAFNPVDDNYFISGS-----------IDG-KVRIWEVRR--CQ---VVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs-----------~Dg-~V~iwdl~~--~~---~~~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ...+...-...+.+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567788888 888777643 223 676665432 22 12233333456889999988 5555544
Q ss_pred CcEEEEECCCCeEee-eeeEEecccc---cCCCCCeEEEEEcCCCCCEEEEEECC-------------------CcEEEE
Q 004410 492 GNCRFYDIKDNQLYQ-QNQICLQGKK---KLPGKRITGFQFSPSDPSKVIVTSAD-------------------SLVRVL 548 (755)
Q Consensus 492 g~I~iwD~~~~~~~~-~~~~~~~~~~---~~~~~~I~~v~fsp~d~~~l~s~s~D-------------------g~I~iw 548 (755)
...++.|........ .....+.+.. ..+......++|.| ++.+.++.+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433344554321110 1111111111 11245678899999 77766554421 334444
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+.......... .+ ......++|+++|+++++-..+
T Consensus 170 ~pdg~~~e~~a--~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLRVVA--HG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEEEEe--cC-cCCCccceECCCCCEEEEccCC
Confidence 44332222111 22 2345678999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.7 Score=47.47 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=51.8
Q ss_pred cEEEEeCCCCeEEEEEecCCc--EEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEeccCCcce-EEEEEcc
Q 004410 410 TVRLWQVGIDRCLRVFSHNNY--VTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYTDIREIV-SAVCYCP 480 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~--V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~~~~~~V-~~v~~sp 480 (755)
.+..||..+++....-.-... -.+++. - ++.+++.|+.+ ..+..||..+..-.......... ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877665433221111 122332 2 67778888754 34778898877544333222111 1112223
Q ss_pred CCCeEEEEeCCC-----cEEEEECCCCeE
Q 004410 481 DGKGGIVGTMTG-----NCRFYDIKDNQL 504 (755)
Q Consensus 481 dg~~la~gs~dg-----~I~iwD~~~~~~ 504 (755)
+|+..++|+.++ .+..||..++.-
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 778888888764 388899887653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.45 E-value=20 Score=39.48 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=55.4
Q ss_pred EEEEcCCC-eEEEEeCCCcEEE---EeCC-----CCeEEEEE----ecC--CcEEEEEEeeC----------CCCEEEEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRL---WQVG-----IDRCLRVF----SHN--NYVTSVAFNPV----------DDNYFISG 447 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~i---Wdl~-----s~~~~~~~----~h~--~~V~~i~fsp~----------d~~~l~sg 447 (755)
.++.+|++ .|+.+..++.+.+ |+.. .+...... .+. ..|+++.+-|. |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 35667777 6666666666555 5331 11222222 122 57888888763 45789999
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
..+|.|++|......+....-|.++|..|....
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999985544434455677777776654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=29 Score=41.31 Aligned_cols=197 Identities=9% Similarity=0.085 Sum_probs=90.7
Q ss_pred EEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCC--eEEEEEec-CCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEc
Q 004410 392 LDLSWSKNG-FLLSSSA-D-----KTVRLWQVGID--RCLRVFSH-NNYVTSVAFNPVDDNYFISGSI---DGKVRIWEV 458 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~-D-----g~V~iWdl~s~--~~~~~~~h-~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl 458 (755)
..++|.+++ .|+.... + ..|+.+++.++ +-...+.. .....-..+.+.++++++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 348898887 4443332 2 36888888887 44444442 2222212233336776655443 356888884
Q ss_pred C--CCeEEEeccCC-cceEEEEEccCCCeEEEEeCCC--c--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 459 R--RCQVVDYTDIR-EIVSAVCYCPDGKGGIVGTMTG--N--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 459 ~--~~~~~~~~~~~-~~V~~v~~spdg~~la~gs~dg--~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
. ++......... .....+. + .+..|.+-+..+ . |...++.+.. .....+.. .....|..+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~---~~~~~i~~~~~~-- 324 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPP---RENIMLEGFTLF-- 324 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEECC---CCCCEEEEEEEE--
Confidence 3 33322222222 2222222 2 234444444322 2 3333443211 01110111 123467788886
Q ss_pred CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe--cCC-CEEEEEeC---CCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT--SDG-KHVVSPSE---DSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs--pdg-~~L~sgs~---Dg~I~iWd~~~~~ 598 (755)
...++++...++.-+++-..................+..+.++ +++ .++++.+. -+.|+.+|+.+++
T Consensus 325 ~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 325 TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3466667777777666544321111111111112223333344 333 34444433 4678999988765
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.26 E-value=5.6 Score=45.88 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=74.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEEC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.++-+.-+.-++..++-.....+.|||.+.+.+..+... .....|.++.|.. .+++.+++.+..+.|.+|.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344455555556555555556799999999886543221 3457889998853 27788888899999998852
Q ss_pred C-----cc----eeeEEEeeeccC-CceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 551 E-----NV----VGKFKASAFRVA-GSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 551 ~-----~~----~~~~~~~~~~~~-~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
. +. ....+.....++ .+|.+.+|.++|.+++.++ +.++|++-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 1 11 111111112333 6789999999998777664 578888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.21 E-value=7.7 Score=38.18 Aligned_cols=146 Identities=9% Similarity=0.096 Sum_probs=79.2
Q ss_pred CEEEEEeCCCcEEEEEcC--CCeEEEeccCCcceEEEEEccCCCeEEEEeCCC------cEEEE-ECCCC----eEeeee
Q 004410 442 NYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG------NCRFY-DIKDN----QLYQQN 508 (755)
Q Consensus 442 ~~l~sgs~Dg~V~iwdl~--~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg------~I~iw-D~~~~----~~~~~~ 508 (755)
+.|+.+....+|.+|++. ..+.......-+.|..+.++..|++|++-=.+. .+|+| +.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE--
Confidence 455444667889999998 344555555568899999999999999854322 46665 22211 1111
Q ss_pred eEEeccc-----------------ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee--------eEEEeeec
Q 004410 509 QICLQGK-----------------KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG--------KFKASAFR 563 (755)
Q Consensus 509 ~~~~~~~-----------------~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~--------~~~~~~~~ 563 (755)
.-+-|+ .-.......+++..|..|++++. .++.+.||.+..... .|......
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEEEecccccEEechhhhhh
Confidence 001110 00123467788888866665543 345677776543222 11000011
Q ss_pred cCC--ceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 564 VAG--SQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 564 ~~~--~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|.. ....++| -+.|+|..+.. .+++..+.
T Consensus 184 ~~~~~~p~~v~i--c~~yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 184 HIDNFKPTQVAI--CEGYIAVMSDL-EVLVLKLE 214 (215)
T ss_pred eecCceEEEEEE--EeeEEEEecCC-EEEEEEEe
Confidence 111 1333444 35677777654 67776653
|
|
| >PF08145 BOP1NT: BOP1NT (NUC169) domain; InterPro: IPR012953 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.024 Score=56.74 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=55.8
Q ss_pred eCCCCceEEEccCCCchhhhhhcccccCCCccccccccccCCCCCCccccCCCCcCcchhhhhhhhhhhhcccccccc
Q 004410 151 DWGKGADLVVSDNDQDEIEIESRLQESGSSQSVSFDEFLGTPGSSSSFVQPLPSRQDEESRDLVDAKRKVKRGWLKKL 228 (755)
Q Consensus 151 ~ld~g~~~~~~~~~~~~~~~~~~lr~v~~~~~~~~e~f~~~~~~sp~~~~~l~r~~~~~~~~~~~~~k~~~~~w~~~~ 228 (755)
..|+...|+++++.+ ||.|+.+..+..|+|++|++ +|+.+..++...++.+....++...+.-|+++
T Consensus 193 pedR~~~fiP~k~~s--------LR~Vp~Y~~~i~ErFeRCLD---LYLcPR~~k~rlnidPesLlPkLP~p~dLrPF 259 (260)
T PF08145_consen 193 PEDRKKNFIPQKFDS--------LRKVPAYENFIKERFERCLD---LYLCPRVRKKRLNIDPESLLPKLPSPKDLRPF 259 (260)
T ss_pred chhccccccchhhhh--------hhccchHHHHHHHHHHHhhh---hhcCcHhhcccCCCCHHHhCCCCcChHhcCCC
Confidence 356788999999988 99999999999999999999 67888888888888777667777766666554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This N-terminal domain is found in BOP1-like WD40 proteins. Bop1 is a nucleolar protein involved in rRNA processing, thereby controlling the cell cycle []. It is required for the maturation of the 25S and 5.8S ribosomal RNAs. It may serve as an essential factor in ribosome formation that coordinates processing of the spacer regions in pre-rRNA. The Pes1-Bop1 complex has several components: BOP1, GRWD1, PES1, ORC6L, and RPL3 and is involved in ribosome biogenesis and altered chromosome segregation. The overexpression of BOP1 increases the percentage of multipolar spindles in human cells. Deregulation of the BOP1 pathway may contribute to colorectal tumourigenesis in humans []. Elevated levels of Bop1 induces Bop1/WDR12 and Bop1/Pes1 subcomplexes and the assembly and integrity of the PeBoW complex is highly sensitive to changes in Bop1 protein levels []. Nop7p-Erb1p-Ytm1p, found in yeast, is potentially the homologous complex of Pes1-Bop1-WDR12 as it is involved in the control of ribosome biogenesis and S phase entry. The integrity of the PeBoW complex is required for ribosome biogenesis and cell proliferation in mammalian cells []. In Giardia, the species specific cytoskeleton protein, beta-giardin, interacts with Bop1 []. ; GO: 0006364 rRNA processing, 0005634 nucleus |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.99 E-value=20 Score=38.44 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred EEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCCC-eEE---E-eccCCcceEEEEEccCCCeEEEEeCC
Q 004410 423 RVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRRC-QVV---D-YTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 423 ~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~~-~~~---~-~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
..+.+...++.+.|... .+.+|++.-..+.|....+... .+. . +......+..|++.|||.+.++-..+
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34446677888888752 3446666665678888887644 322 1 22344479999999999888887778
Q ss_pred CcEE
Q 004410 492 GNCR 495 (755)
Q Consensus 492 g~I~ 495 (755)
|.|+
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.37 Score=47.29 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=60.3
Q ss_pred eEEEEeCCCcEEEEeCCCCeE-EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc--ceEEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRC-LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE--IVSAV 476 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~-~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~--~V~~v 476 (755)
.++.|+.+|.|.+|+...... ...+ .....|.++--.-.++.+..++..||.||.|++.-.+.+....+.. .+..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 789999999999998762111 1111 1223343333332355689999999999999999888875444333 33333
Q ss_pred EEccCCCeEEEE--eCCCcEEEEECC
Q 004410 477 CYCPDGKGGIVG--TMTGNCRFYDIK 500 (755)
Q Consensus 477 ~~spdg~~la~g--s~dg~I~iwD~~ 500 (755)
.....+..++++ +.+..++.|++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchh
Confidence 344444444444 555555555554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.94 E-value=9.8 Score=40.69 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCc------EEEEEcCC-----CeE-----EEeccCCc--------ceEEEEEccCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGK------VRIWEVRR-----CQV-----VDYTDIRE--------IVSAVCYCPDGK 483 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~------V~iwdl~~-----~~~-----~~~~~~~~--------~V~~v~~spdg~ 483 (755)
-+.+..|.+.| ++..+++.+.+|. +..+++.. ..+ ..+....+ -.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35567788876 5566666677776 55555543 111 11122111 234778867777
Q ss_pred eEEEEeCC------CcEEEEECCCCeEeeeeeEEecc-------cccCCCCCeEEEEEcCCCCCEEEEEEC-----CC--
Q 004410 484 GGIVGTMT------GNCRFYDIKDNQLYQQNQICLQG-------KKKLPGKRITGFQFSPSDPSKVIVTSA-----DS-- 543 (755)
Q Consensus 484 ~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~-------~~~~~~~~I~~v~fsp~d~~~l~s~s~-----Dg-- 543 (755)
++++.=.+ ..|+.++.. ++....+.+...- .....+..+.+|+++| +++.|++... |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCcc
Confidence 66665555 678888877 5555444322111 2233567799999999 7775555432 22
Q ss_pred -------cEEEEE--CCc-c--eeeEEEeeec-----cCCceEEEEEecCCCEEEEEe-----CCCcEEEEEcC
Q 004410 544 -------LVRVLC--GEN-V--VGKFKASAFR-----VAGSQMFATFTSDGKHVVSPS-----EDSNIYIWNYS 595 (755)
Q Consensus 544 -------~I~iwd--~~~-~--~~~~~~~~~~-----~~~~v~~l~fspdg~~L~sgs-----~Dg~I~iWd~~ 595 (755)
.++|+. ..+ . ...+...... ....+..+.+-+++++|+-== ....++|+.+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 155544 332 1 3334333232 356788899999998776422 23345555444
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=22 Score=38.74 Aligned_cols=158 Identities=19% Similarity=0.293 Sum_probs=89.0
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccc-cccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSREL-SSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~-~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
+-|.-.++.|.+. ..|.+.=|.++.....+ ..+ -...+|+|.+++||+|.+.||.--.|++|.+.+....+..
T Consensus 28 vFfDDaNkqlfav-rSggatgvvvkgpndDVpiSf-----dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 28 VFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISF-----DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred eeeccCcceEEEE-ecCCeeEEEEeCCCCCCCcee-----eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 4455444544433 33445556554332211 111 1235679999999999999999999999999987433221
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+ .++.+.....|....|+.+
T Consensus 102 l~~----------------------------------------------------------~~~ck~k~~~IlGF~W~~s 123 (657)
T KOG2377|consen 102 LEY----------------------------------------------------------TQECKTKNANILGFCWTSS 123 (657)
T ss_pred hHH----------------------------------------------------------HHHhccCcceeEEEEEecC
Confidence 111 1112223445788888876
Q ss_pred CeEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEE-e-CCCcEEEEEcCCCeEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISG-S-IDGKVRIWEVRRCQVV 464 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sg-s-~Dg~V~iwdl~~~~~~ 464 (755)
..++..+..| +-+|.+...+ .++.. .|+..|.-..|++ +.+.++-+ + ..+++.=+-++++.+.
T Consensus 124 ~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 124 TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeeccccccccccEEEeeceee
Confidence 6555555444 5666543322 22222 3778888888988 55554333 3 3444444555554444
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.78 E-value=9.6 Score=37.13 Aligned_cols=175 Identities=9% Similarity=0.042 Sum_probs=96.4
Q ss_pred eEEEEeC--CCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE
Q 004410 401 FLLSSSA--DKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (755)
Q Consensus 401 ~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~ 477 (755)
++.+.+. ...|++||+.+++.+...... ..+..=-.....+.+..-.-.+|.-.++|.++.+.+......+.-..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 5555553 346999999999887665422 2222111111112223334467888899999888775555555555555
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE----------EEECCCcEEE
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI----------VTSADSLVRV 547 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~----------s~s~Dg~I~i 547 (755)
. |++.|+.+....++++-|..+.......++...+... ..++.+.|- ++..++ .--..|.|.-
T Consensus 138 ~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 138 S--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred c--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5 6777888777778888888887777666666555322 222223332 122221 2222333333
Q ss_pred E-ECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEE
Q 004410 548 L-CGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSP 583 (755)
Q Consensus 548 w-d~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sg 583 (755)
| |+......... ...+....+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~-~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNL-DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCc-cccccccccceeecCcCCeEEEec
Confidence 3 33332222211 12345567788998887 555655
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.55 E-value=6.1 Score=39.11 Aligned_cols=218 Identities=11% Similarity=0.019 Sum_probs=103.4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC--CEEEE-EeCCCcEEEEEcCCC--eEEE------eccC
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD--NYFIS-GSIDGKVRIWEVRRC--QVVD------YTDI 469 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~--~~l~s-gs~Dg~V~iwdl~~~--~~~~------~~~~ 469 (755)
++..-=..+.|.-||+.+.+..+.--....+..+.+ |..+ ..+++ ++..-.|.-||.... .+.. -...
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 333333456677799887665443322222333333 3222 23333 333233444663222 1111 1112
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+.....-..+|+|++ ..|+....-..+....+.+.....-+........-.--++++|.-+...+.++-+.+-.|.-||
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345666778999998 4554422111222222222211000000000011123356888874455666777788888888
Q ss_pred CCcc-------eeeEEEeeec--cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc--cCCCccccceeeeecCCe
Q 004410 550 GENV-------VGKFKASAFR--VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS--SSRSKSIWSCESFLSHNV 618 (755)
Q Consensus 550 ~~~~-------~~~~~~~~~~--~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~f~~~~~ 618 (755)
.... ...+...... ..-..-.+++..+|.+.++.-..++|...|..+|+.. .+.+..-.++-+|...+.
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 3321 1111111000 1111234556678888888888999999999999832 222222234446665544
Q ss_pred EE
Q 004410 619 SV 620 (755)
Q Consensus 619 ~v 620 (755)
.+
T Consensus 267 d~ 268 (310)
T KOG4499|consen 267 DI 268 (310)
T ss_pred cE
Confidence 43
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=14 Score=42.45 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=54.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+.+ ..+..||..+++....-. +...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55555544 357788887765443221 1111122222 2 56777777742 35888998876544322
Q ss_pred cCCcce-EEEEEccCCCeEEEEeCCC--------cEEEEECCCCeEe
Q 004410 468 DIREIV-SAVCYCPDGKGGIVGTMTG--------NCRFYDIKDNQLY 505 (755)
Q Consensus 468 ~~~~~V-~~v~~spdg~~la~gs~dg--------~I~iwD~~~~~~~ 505 (755)
...... ...+...+++.+++|+.++ .+.+||..+++-.
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 211111 1112223666777776432 3888998877543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.24 E-value=9.9 Score=45.03 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=57.6
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC---------CeEe---eeeeEEecccccCCCCCeEEEEEcCCC--
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD---------NQLY---QQNQICLQGKKKLPGKRITGFQFSPSD-- 532 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~---------~~~~---~~~~~~~~~~~~~~~~~I~~v~fsp~d-- 532 (755)
....-.|..|.++|+|.+|+..+..|.+.+.=.+. ++.. ....+...-........|..+.|+|..
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 33445789999999999999988876654443221 1111 111111111122345679999999952
Q ss_pred CCEEEEEECCCcEEEEECCcce
Q 004410 533 PSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
+..|++-..|+++|+||+.+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 6899999999999999987643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.12 E-value=4.7 Score=44.18 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=89.2
Q ss_pred CCCEEE-EEeCCCcEEEEEcCCCeEEE-eccCCcceEEEEEccCCC-------eEEEEeCCCcEEEEECCCC--eEeeee
Q 004410 440 DDNYFI-SGSIDGKVRIWEVRRCQVVD-YTDIREIVSAVCYCPDGK-------GGIVGTMTGNCRFYDIKDN--QLYQQN 508 (755)
Q Consensus 440 d~~~l~-sgs~Dg~V~iwdl~~~~~~~-~~~~~~~V~~v~~spdg~-------~la~gs~dg~I~iwD~~~~--~~~~~~ 508 (755)
+.++++ .|....+++-.|+..|+++. |..+.. + -+.|.|+.+ .-++|-.+..|.-.|.+-. ++...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 455544 46666788889999999994 554444 4 578888532 3355666666666676532 22111
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
..+.........+..- ....+|++++..|.|++||--....+-.. .+....|..+..+.+|++|++.+. ..
T Consensus 555 ----esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtal--P~lG~aIk~idvta~Gk~ilaTCk-~y 625 (776)
T COG5167 555 ----ESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTAL--PGLGDAIKHIDVTANGKHILATCK-NY 625 (776)
T ss_pred ----eehhcccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcC--cccccceeeeEeecCCcEEEEeec-ce
Confidence 1111011111222111 15679999999999999995543333222 445567888999999999888775 47
Q ss_pred EEEEEcCC
Q 004410 589 IYIWNYSN 596 (755)
Q Consensus 589 I~iWd~~~ 596 (755)
|.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 77777653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.86 E-value=1 Score=31.93 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.6
Q ss_pred ccEEEEEEecCC---CEEEEEcCCCcEEEEEccC
Q 004410 285 GSILTMKFSLDG---QYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 285 ~~V~~l~fspdg---~~LaSgs~Dg~I~vWdv~~ 315 (755)
|+|.+|+|+|+. .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 5899888889999999975
|
It contains a characteristic DLL sequence motif. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.35 E-value=25 Score=35.86 Aligned_cols=189 Identities=10% Similarity=0.068 Sum_probs=120.8
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
..-.+++-.+|| .-.++...+.|--.|..+++....- .....-..|...| |+..-++-+.. -|.-.|-++.++..+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEe
Confidence 345567788888 6677777788888888888776543 4555567778888 77766664433 455566666666543
Q ss_pred cc----CCcceEEEEEccCCCeEEEEeCC---------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 467 TD----IREIVSAVCYCPDGKGGIVGTMT---------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 467 ~~----~~~~V~~v~~spdg~~la~gs~d---------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
.- .........|.+.|.+-+++... +.|++|+.- .+..-+.|+..| ++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------------qG~gpyGi~atp-dG 200 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------------QGGGPYGICATP-DG 200 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------------CCCCCcceEECC-CC
Confidence 32 23456788999999888876531 223333332 234567888999 88
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..-++.-.++.|-..|..................-..+.-+|.|+.-+|....+.++.+|-.+..
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 87777777788877776554322222111212233445557788888887777888888766544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.23 E-value=32 Score=36.22 Aligned_cols=191 Identities=8% Similarity=0.040 Sum_probs=86.8
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--E
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V 464 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~ 464 (755)
...+.|..+..++ ++..+.| +--.+.++.-..+. .......+.... ++..++ .+..|.|+.= ...++. .
T Consensus 64 l~~I~f~~~~g~i-vG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWI-VGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEE-EEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCCceEE-EcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCeeE
Confidence 4566665433333 3444433 33333333222221 223344444444 333333 3444544321 222221 1
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
........+..+..++||++++++..-....-||--...-. .+......+|..|.|.| ++.+.+++ ..|.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~--------~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ--------PHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E--------EEE--SSS-EEEEEE-T-TS-EEEEE-TTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce--------EEccCccceehhceecC-CCCEEEEe-CCcE
Confidence 23344567888999999999988765544556765432111 11223457899999999 65555544 8888
Q ss_pred EEEEECCcceeeEEEeee---ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAF---RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~---~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++=+.......+..... ...-.+.+++|.+++...++|+. |. .+...+.|+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGk 263 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGK 263 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTS
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCc
Confidence 888873333333322111 12334789999998877776654 43 344555555
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.14 E-value=8.5 Score=44.89 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred ceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCe---------Eee-eeeEEecc-cccCCCCCeEEEEEc--CCCCCEE
Q 004410 472 IVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQ---------LYQ-QNQICLQG-KKKLPGKRITGFQFS--PSDPSKV 536 (755)
Q Consensus 472 ~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~---------~~~-~~~~~~~~-~~~~~~~~I~~v~fs--p~d~~~l 536 (755)
.|+.|...- +...|+++..||.|.+|.++.-. ... ........ .........++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 355554443 45678899999999999763100 000 00000000 011124578999998 6 77889
Q ss_pred EEEECCCcEEEEECCcceeeE-EEeeeccCCceEEEEEecCC-----C-EEEEEeCCCcEEEEEc
Q 004410 537 IVTSADSLVRVLCGENVVGKF-KASAFRVAGSQMFATFTSDG-----K-HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~v~~l~fspdg-----~-~L~sgs~Dg~I~iWd~ 594 (755)
|+++....|.||-.......+ ......+...|-+++|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988888887654421111 11123466788899996643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.052 Score=62.26 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=45.5
Q ss_pred eecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEE-----------EecCCCEEEEEcCCCcEEE
Q 004410 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMK-----------FSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 242 ~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~-----------fspdg~~LaSgs~Dg~I~v 310 (755)
-|-++.-++..+-+++.|++..+..... ..+.+|...+..++ .||||+.+|+++.||.++.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR--------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH--------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3445556777888889998877654332 12445665555544 5889999999999999999
Q ss_pred EEcc
Q 004410 311 WKVI 314 (755)
Q Consensus 311 Wdv~ 314 (755)
|.+.
T Consensus 262 ~Qiy 265 (1283)
T KOG1916|consen 262 YQIY 265 (1283)
T ss_pred eeee
Confidence 8763
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.65 E-value=43 Score=36.98 Aligned_cols=147 Identities=13% Similarity=0.228 Sum_probs=89.5
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC---C-C-eEEEEeCCCcEEEEeCCCC--------
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---N-G-FLLSSSADKTVRLWQVGID-------- 419 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~---~-~-~L~s~s~Dg~V~iWdl~s~-------- 419 (755)
.....+.++..+.+.++.+.........+.--..-..+|..+..-+ . . ..++.=.-+.+.||.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3455666777788888877443322212221222346777776542 1 2 4444566677888876211
Q ss_pred --eEEEEEec--CCcEEEEEEeeC---C-CCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 420 --RCLRVFSH--NNYVTSVAFNPV---D-DNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 420 --~~~~~~~h--~~~V~~i~fsp~---d-~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
+....+.| ......+++-|- . .+++.+-+.||.+.+++-+..........---...++|.+.-..|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 12222233 233344444332 2 467888999999999998876654444334445568899988999999999
Q ss_pred CcEEEEEC
Q 004410 492 GNCRFYDI 499 (755)
Q Consensus 492 g~I~iwD~ 499 (755)
..+..|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 99998865
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.48 E-value=39 Score=36.27 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=49.4
Q ss_pred cEEEEeCCCCeEEEEEecC--CcE--EEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccC-----C-cceE
Q 004410 410 TVRLWQVGIDRCLRVFSHN--NYV--TSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDI-----R-EIVS 474 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~--~~V--~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~-----~-~~V~ 474 (755)
.+.+||+.+.+-...-... ... ...+....++.+++.|+.+ ..+.+||+.+.+-...... . ....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 5888998877654322111 111 1111111256777777754 3578889887654432221 1 1112
Q ss_pred EEEEccCCCeEEEEeCC-----------CcEEEEECCCCeE
Q 004410 475 AVCYCPDGKGGIVGTMT-----------GNCRFYDIKDNQL 504 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d-----------g~I~iwD~~~~~~ 504 (755)
..+..-+++.++.|+.+ ..+.+||+.+..-
T Consensus 131 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 131 HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 22223356677777653 2477888887653
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=88.47 E-value=49 Score=37.40 Aligned_cols=177 Identities=8% Similarity=-0.020 Sum_probs=84.2
Q ss_pred eEEEEeCC-------CcEEEEeCCCCeEEEEEe---cCC--cEE-EEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 004410 401 FLLSSSAD-------KTVRLWQVGIDRCLRVFS---HNN--YVT-SVAFNPVDDNYFISGSID-----GKVRIWEVRRCQ 462 (755)
Q Consensus 401 ~L~s~s~D-------g~V~iWdl~s~~~~~~~~---h~~--~V~-~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~ 462 (755)
.++.|+.+ ..+.+||+.+.+-...-. ... ... +++. - ++.+++.|+.+ ..+..||+.+.+
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-I-GSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-E-CCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 55555542 347788988776543211 011 111 1222 2 56777777765 358889988766
Q ss_pred EEEeccC---Ccc--eEEEEEccCCCeEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 463 VVDYTDI---REI--VSAVCYCPDGKGGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 463 ~~~~~~~---~~~--V~~v~~spdg~~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
-...... ..+ -.++ ..-+++.++.|+.++ .+..||+.+..-.... ..+...........+.+ +
T Consensus 256 W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~R~~~~~~~~---~ 328 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCS---TPGDSFSIRGGAGLEVV---Q 328 (470)
T ss_pred EEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCC---CCCCCCCCCCCcEEEEE---C
Confidence 5433221 111 1122 223566677776543 3678888776543210 00001111111122222 4
Q ss_pred CCEEEEEECC----CcEEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEEEeCC
Q 004410 533 PSKVIVTSAD----SLVRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 533 ~~~l~s~s~D----g~I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~D 586 (755)
+++++.++.+ ..+.+||..+........... ........+..-++++++.|+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 5677777655 457888887654433221000 11111112223356677777753
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.60 E-value=19 Score=44.58 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=50.1
Q ss_pred eEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+.-|..++.+..+.....++.+..-+.+-+|+.........+... .....+ ++..++++..||.+..||...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 192 LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN----GQLESR-DGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc----cccCcc-CCceEEEEEecCCEEeeecCCC
Confidence 34445566666666665554555566677777775544443333211 111155 8999999999999999999987
Q ss_pred eEE
Q 004410 462 QVV 464 (755)
Q Consensus 462 ~~~ 464 (755)
+.+
T Consensus 267 ~~~ 269 (993)
T KOG1983|consen 267 KLQ 269 (993)
T ss_pred cee
Confidence 653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=87.44 E-value=39 Score=35.15 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=110.5
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCC------CCeE-EEEEe------cCCcEEEEEEeeCCCC------------E
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVG------IDRC-LRVFS------HNNYVTSVAFNPVDDN------------Y 443 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~------s~~~-~~~~~------h~~~V~~i~fsp~d~~------------~ 443 (755)
.-+.|+++|.+ .-++...-+...+||.. ..+. +-.+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45789999988 55666667889999986 2222 22222 235788898886 333 3
Q ss_pred EEEEeCCCcEEEEEcCCC------eEEEeccC-Ccc-eEEEEEcc--CCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEe
Q 004410 444 FISGSIDGKVRIWEVRRC------QVVDYTDI-REI-VSAVCYCP--DGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~------~~~~~~~~-~~~-V~~v~~sp--dg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
|+.+++||+|.-|...-. ..+..... ... ...+++.. .+.+|..+ -..++|.+||-.-.++...-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~- 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI- 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc-
Confidence 677889999999985322 12222211 122 34455543 34555443 45788888886644332110000
Q ss_pred cccccCCCCCeEEEE---------EcCC--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec------
Q 004410 513 QGKKKLPGKRITGFQ---------FSPS--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS------ 575 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~---------fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp------ 575 (755)
..... ..-.-..++ |..+ +...=+.+..-|.|-++|..-....... ..+.-...+.++..|
T Consensus 182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCcccCCceeeeChhhhCCC
Confidence 00000 000001111 1110 1112223334468888887643222111 133334456666644
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|.+|+---.||+|..||..+++
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCc
Confidence 57778877789999999998876
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.32 E-value=4 Score=40.84 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---------------cCCcceEEEEEccCCCeEEEEeCCC
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------------DIREIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~---------------~~~~~V~~v~~spdg~~la~gs~dg 492 (755)
...+..+. . .++++++.+.+|.+++||+.+++.+... .....|..+.++.+|.-|++-+ +|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 3 6789999999999999999998765211 2446688888888887766644 57
Q ss_pred cEEEEECCCC
Q 004410 493 NCRFYDIKDN 502 (755)
Q Consensus 493 ~I~iwD~~~~ 502 (755)
..+.|+..-+
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 8888886644
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.90 E-value=26 Score=41.08 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=69.7
Q ss_pred eEEEEeCCCcEEEEeCCC-------C-------------eEEEEEecCCcEEEEEEe--eCCCCEEEEEeCCCcEEEEEc
Q 004410 401 FLLSSSADKTVRLWQVGI-------D-------------RCLRVFSHNNYVTSVAFN--PVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s-------~-------------~~~~~~~h~~~V~~i~fs--p~d~~~l~sgs~Dg~V~iwdl 458 (755)
.|+.+..||.|.+|.+++ . ++...+.....+..++++ . ..+++|+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEEEE
Confidence 899999999999996521 0 122233466788999998 6 6788888888888888765
Q ss_pred CCC--eEE--EeccCCcceEEEEEccCC---C---eEEEEeCCCcEEEEEC
Q 004410 459 RRC--QVV--DYTDIREIVSAVCYCPDG---K---GGIVGTMTGNCRFYDI 499 (755)
Q Consensus 459 ~~~--~~~--~~~~~~~~V~~v~~spdg---~---~la~gs~dg~I~iwD~ 499 (755)
... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 442 211 122356678999998743 2 7788899999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.60 E-value=17 Score=42.12 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=68.8
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEc--cCCCeEEEEeCCCcEEEEECC-----C
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYC--PDGKGGIVGTMTGNCRFYDIK-----D 501 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~s--pdg~~la~gs~dg~I~iwD~~-----~ 501 (755)
++-+.-+. -++.-++-+....+.|||.+.+...... ...+.|..+.|. |+|+.+++.+....|.+|--. .
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344443 3444444444567999999998866333 447889999886 488999888889999998542 1
Q ss_pred C----eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 502 N----QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 502 ~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
. ..+... .+ .....++|.+..|.+ ++.+++.+ ++.+.|+|
T Consensus 111 ~~p~w~~i~~i--~i---~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKI--DI---SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFD 154 (631)
T ss_pred CCcccceeEEE--Ee---ecCCCCCccceeEec-CCeEEEEe--CCEEEEEC
Confidence 1 111111 11 122346789999998 66555544 45677776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.89 E-value=25 Score=34.36 Aligned_cols=129 Identities=14% Similarity=0.054 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE---EEeccCCcce---EEEEEcc
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV---VDYTDIREIV---SAVCYCP 480 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~---~~~~~~~~~V---~~v~~sp 480 (755)
.+|.-..+|..+-+++..+...+.=..++- ++..|+.+....+++.-|..+-.. ++......+| +-+.| -
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-V 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-V 184 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-e
Confidence 467778899999999888877776667664 445566665555676666654321 1222222222 22222 1
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe----cccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL----QGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~----~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
||...|-.=.+..|...|..+++......+.- ......+..-.+++++.|+.++++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44444444444555555666666554332210 011222345678999999665666665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.72 E-value=0.42 Score=55.24 Aligned_cols=122 Identities=9% Similarity=0.074 Sum_probs=70.5
Q ss_pred cCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 468 DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 468 ~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
+..+.+-.+.|-. +...++ -.-|.+.|||+. .|+++..+.+............|..+.|.+ +..++..+-.++.
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGE 206 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCc
Confidence 3445555555532 111222 234677888876 455554444433333222223344444555 5567777888899
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEE-----------EEecCCCEEEEEeCCCcEEEEEcC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFA-----------TFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l-----------~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|++.........+. ..|...++.+ ..||||+.+++++.||.+++|.+-
T Consensus 207 i~lL~~~ra~~~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 207 IRLLNINRALRSLF---RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeEeeechHHHHHH---HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 99877654333221 1244443332 379999999999999999988864
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.46 E-value=3.6 Score=41.16 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=57.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-------cccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-------AHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-------~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+.+..++++|++-+.+|.++|||+.+....+........+. .....|..+.++.+|.-|++-+ +|....|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 45677899999999999999999998776655432222232 4667899999999998888766 578899987
Q ss_pred cCCe
Q 004410 314 IEHE 317 (755)
Q Consensus 314 ~~~~ 317 (755)
.-+.
T Consensus 95 ~L~~ 98 (219)
T PF07569_consen 95 DLGC 98 (219)
T ss_pred ccce
Confidence 5443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.35 E-value=2.5 Score=30.01 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.4
Q ss_pred CcEEEEEEeeCCC--CEEEEEeCCCcEEEEEcCC
Q 004410 429 NYVTSVAFNPVDD--NYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 429 ~~V~~i~fsp~d~--~~l~sgs~Dg~V~iwdl~~ 460 (755)
+.|.++.|+|..+ ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6899988899999999995
|
It contains a characteristic DLL sequence motif. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=90 Score=37.18 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=42.4
Q ss_pred ceeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC------CcE
Q 004410 240 SATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED------GTV 308 (755)
Q Consensus 240 ~~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D------g~I 308 (755)
.+.++|||++||.+.. ...|+|.++.++..... .+.+ .-..++|++|++.|+....+ ..|
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------LLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------cccC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 4778999998886533 34578888765431111 1111 11458999999877665442 357
Q ss_pred EEEEccCC
Q 004410 309 RVWKVIEH 316 (755)
Q Consensus 309 ~vWdv~~~ 316 (755)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777776
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=85.14 E-value=58 Score=34.90 Aligned_cols=101 Identities=11% Similarity=0.140 Sum_probs=53.3
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEec-----C-Cc-EEEEEEeeCCCCEEEEEeCC-----------CcEEEEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFSH-----N-NY-VTSVAFNPVDDNYFISGSID-----------GKVRIWE 457 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~h-----~-~~-V~~i~fsp~d~~~l~sgs~D-----------g~V~iwd 457 (755)
.++.|+.+ ..+.+||+.+.+....-.. . .. -.+++. - ++.+++.|+.+ ..|.+||
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEEE
Confidence 55555542 3578889887765432211 1 11 122222 2 56777777754 2477889
Q ss_pred cCCCeEEEeccCC------cceEEEEEccCCCeEEEEeCC-------------CcEEEEECCCCeEe
Q 004410 458 VRRCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMT-------------GNCRFYDIKDNQLY 505 (755)
Q Consensus 458 l~~~~~~~~~~~~------~~V~~v~~spdg~~la~gs~d-------------g~I~iwD~~~~~~~ 505 (755)
..+.+-..+.... .....+. -+++.+++|+.+ ..+.+||+.+.+-.
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8876544332211 1111222 366666665432 45888998876543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.93 E-value=39 Score=39.30 Aligned_cols=193 Identities=12% Similarity=0.187 Sum_probs=96.6
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD- 465 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~- 465 (755)
...++..+|.. .+. +.--.|+|+++ +|+.+..+. ....+-.+.|+. ...|++...+|++++|++-......
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhccc
Confidence 34455566644 222 34456888886 455554442 333788899984 6678888899999999986543322
Q ss_pred ---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEE-CCCCeEeeeeeEEecccccCCCCCe--EEEEEcCCCCCEEEEE
Q 004410 466 ---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD-IKDNQLYQQNQICLQGKKKLPGKRI--TGFQFSPSDPSKVIVT 539 (755)
Q Consensus 466 ---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD-~~~~~~~~~~~~~~~~~~~~~~~~I--~~v~fsp~d~~~l~s~ 539 (755)
.......|..+.+..+ .+++-+.+|.+.+-+ .....+... ...+.... ++-...+.+......-
T Consensus 120 svg~e~~~~~I~ec~~f~~--GVavlt~~g~v~~i~~~~~~~~~~~--------~diP~~~~~~~~Wt~~~~~~~~~~ll 189 (829)
T KOG2280|consen 120 SVGFESQMSDIVECRFFHN--GVAVLTVSGQVILINGVEEPKLRKM--------PDIPYNELPKSCWTVFQPHRQSTILL 189 (829)
T ss_pred ccccccccCceeEEEEecC--ceEEEecCCcEEEEcCCCcchhhhC--------CCCCCccCCCcceeEecCCCcceeEE
Confidence 1112223443444333 455556666655443 322221110 00011111 2222222111111100
Q ss_pred ECCCc--EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSL--VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~--I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.-+-. ..++............ ......+..+..||+.++|+--..+|.|.+-..+..+
T Consensus 190 ~v~~~v~~~~~q~~~~~~q~~~~-~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 190 DVDVAVGLHICQVEESRVQLHAL-SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred eechhhhhcccceeccccccccc-CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 00100 0111111111111110 1123567889999999999999999999998887665
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=84.88 E-value=47 Score=35.28 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=54.8
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEE---EEEe---cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCL---RVFS---HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVV 464 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~---~~~~---h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~ 464 (755)
.++.|+.+ ..+..+|+.+.+.. ..+. ....-.+++.. ++.+++.|+.. ..+..||+.+.+-.
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 55556543 35677777766531 2221 11111222222 56777777742 35888898876544
Q ss_pred EeccCC--cceEEEEEccCCCeEEEEeCCCc----EEEEECCCCeE
Q 004410 465 DYTDIR--EIVSAVCYCPDGKGGIVGTMTGN----CRFYDIKDNQL 504 (755)
Q Consensus 465 ~~~~~~--~~V~~v~~spdg~~la~gs~dg~----I~iwD~~~~~~ 504 (755)
...... ......+...+++..+.|+.++. +.+||+.+++-
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 433211 12222333446777888876643 56888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=84.85 E-value=54 Score=34.30 Aligned_cols=169 Identities=11% Similarity=0.192 Sum_probs=91.8
Q ss_pred cEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCC----CE-EEEEeCCCcEEEEEcCCCeEEEeccCC-------
Q 004410 410 TVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDD----NY-FISGSIDGKVRIWEVRRCQVVDYTDIR------- 470 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~----~~-l~sgs~Dg~V~iwdl~~~~~~~~~~~~------- 470 (755)
+|.+||+.+++.++.+. ....+..+.+...++ .+ +++=+..+-|.|+|+.+++......+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988884 356788898887332 23 344444568999999987765433221
Q ss_pred -------------cceEEEEEcc---CCCeEEEEeCCCcEEEEECCCC-----eEeeee----eEEecccccCCCCCeEE
Q 004410 471 -------------EIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDN-----QLYQQN----QICLQGKKKLPGKRITG 525 (755)
Q Consensus 471 -------------~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~-----~~~~~~----~~~~~~~~~~~~~~I~~ 525 (755)
..+..++.+| +|+.|.-....+. ++|.+.+. ...... .+...+. ......+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 2244455544 4444444433321 22222211 110000 0001111 1135567
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcce----eeEEEeeeccCCceEEEEEec--CCCEEEEE
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVV----GKFKASAFRVAGSQMFATFTS--DGKHVVSP 583 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~v~~l~fsp--dg~~L~sg 583 (755)
+++.+ ++.++++--..+.|..|+..... ..........-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 88888 88888898999999999987622 111111112234678888888 66655554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.64 E-value=11 Score=41.54 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEEC---------CCCeEeeeeeEE-ecc--cccCCCCCeEEEEEcCCC--CCEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDI---------KDNQLYQQNQIC-LQG--KKKLPGKRITGFQFSPSD--PSKVI 537 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~---------~~~~~~~~~~~~-~~~--~~~~~~~~I~~v~fsp~d--~~~l~ 537 (755)
.|..+..++.|..++..+.+|.+.++=. .+++........ +.. ......-.+..++|+|+. ...++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778899999999999999998777642 233322211111 111 111233456678999965 67899
Q ss_pred EEECCCcEEEEECCcceeeE
Q 004410 538 VTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~ 557 (755)
+-+.|..||||+.......+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999977654433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=64 Score=34.59 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+.....+..++.+......+--|-.+....+.... .+.+.++.+.|++.+++++..-..++.++-.....
T Consensus 137 i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~--------~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW-- 206 (334)
T PRK13684 137 ITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA--------AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAW-- 206 (334)
T ss_pred EEEECCCcceeeeccceEEEECCCCCCceeCcCCC--------cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeE--
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
......-...++++.+.+++
T Consensus 207 ------------------------------------------------------------~~~~~~~~~~l~~i~~~~~g 226 (334)
T PRK13684 207 ------------------------------------------------------------TPHQRNSSRRLQSMGFQPDG 226 (334)
T ss_pred ------------------------------------------------------------EEeeCCCcccceeeeEcCCC
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEE-cCCCeEEEe-ccCCcce
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSIDGKVRIWE-VRRCQVVDY-TDIREIV 473 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-----~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd-l~~~~~~~~-~~~~~~V 473 (755)
.++..+..|.+++=....+..-...... ..+..+.+.| ++..+++|.....++--| -.+-+.+.. .......
T Consensus 227 ~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 227 NLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred CEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcce
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
..+.|..+++.+++|. .|.|..|+
T Consensus 306 ~~~~~~~~~~~~~~G~-~G~il~~~ 329 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQ-RGVLLRYV 329 (334)
T ss_pred EEEEEeCCCceEEECC-CceEEEec
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=83.57 E-value=20 Score=32.55 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=68.2
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee---eeEEecccccCCCCCeEEEEE---cCCCCCEEEEEECCCcEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ---NQICLQGKKKLPGKRITGFQF---SPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~---~~~~~~~~~~~~~~~I~~v~f---sp~d~~~l~s~s~Dg~I~i 547 (755)
..-.|......|++++..|+|.|++......... ..+.+. .-...|++++- .|.+..-++.-+....+..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence 3446766777899999999999998875432211 001011 12346677654 4344555555566778999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEec----CCCEEEEEeCCCcEEEEEcCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTS----DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fsp----dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
||..+....|.. .....+.++.+.. +..+++.| .+..|.-||....
T Consensus 78 YDV~~N~d~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 78 YDVENNSDLFYK---EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred EEcccCchhhhh---hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 998876665543 2345666666532 23444444 4456666665543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=82.42 E-value=54 Score=32.42 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=69.6
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCC--CCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC------cEEEE-EcCC--
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVG--IDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------KVRIW-EVRR-- 460 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~--s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg------~V~iw-dl~~-- 460 (755)
..++-...+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+|+++--.+. .+|+| +.+.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33444443444444666789999988 445667777779999999999 899999854332 56665 2211
Q ss_pred --CeEE--Ee---------------------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 461 --CQVV--DY---------------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 461 --~~~~--~~---------------------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
.+.+ .. ......+.+++-.|-.-.|++|+ ++++.+|.+.....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 1111 11 12245678888888544566655 56788887765443
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.71 E-value=81 Score=37.99 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE-----------------eeeccCCceEEEEEecCCCEEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA-----------------SAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------------~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
+.|.+++... -+..++.+-.||.|.++|-.+....... ..+.....+..++|||.+.-++.-
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4577777666 6678999999999999996654221111 001122244568999999999999
Q ss_pred eCCCcEE
Q 004410 584 SEDSNIY 590 (755)
Q Consensus 584 s~Dg~I~ 590 (755)
..||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999966
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.47 E-value=42 Score=37.48 Aligned_cols=116 Identities=13% Similarity=0.040 Sum_probs=62.3
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-CCCCCeEEEEEcCCC-----CCEEEEEE-C
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-LPGKRITGFQFSPSD-----PSKVIVTS-A 541 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~~~~~I~~v~fsp~d-----~~~l~s~s-~ 541 (755)
.-.....|+|.|||..|++--..|.|++++..++...... .+..... .....+.+|+++|+- ..+|.+.. .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~--~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF--TLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee--cCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3456788999999976666444699999987654322111 1111111 135778999999842 12444442 1
Q ss_pred ---------CCcEEEEECCc-------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 542 ---------DSLVRVLCGEN-------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 542 ---------Dg~I~iwd~~~-------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
...|.-|.... ....+..........-..+.|.|||.++++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 22343344321 1111111101111234567899999877766654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=81.26 E-value=1.4e+02 Score=36.25 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=71.6
Q ss_pred CCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCe-----EEEEE-ecCCc----------EEEEEEeeCCCCEEEEEeCC
Q 004410 389 SEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDR-----CLRVF-SHNNY----------VTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 389 ~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~-----~~~~~-~h~~~----------V~~i~fsp~d~~~l~sgs~D 450 (755)
.+..+++|+|.. .||.....|...||++.... .+... .+.+. -..|.|.+ +.+.|+.++ .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-R 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-C
Confidence 467789999976 99999999999999992111 11111 12222 34677877 666666655 4
Q ss_pred CcEEEEEcCCCeEE---EeccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCC
Q 004410 451 GKVRIWEVRRCQVV---DYTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 451 g~V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~ 501 (755)
..+.++|+.+.... ........|..+.-+|.. .++++-+ ...|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 67888999877553 233445678888888862 2333333 36777778776
|
These proteins are found in fungi. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.21 E-value=1e+02 Score=34.88 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=52.5
Q ss_pred eEEEEeCC--CcEEEEeCCCCeEEEEEecCCcE--EEEEEeeCCCCEEEEEeCCC---cEEEEEcCCCeEEEeccCCcce
Q 004410 401 FLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSIDG---KVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 401 ~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V--~~i~fsp~d~~~l~sgs~Dg---~V~iwdl~~~~~~~~~~~~~~V 473 (755)
..+.|+.+ ..+..||..+++....-.-.... .+++. .++.+.+.|+.++ .+..||..+.+-........+.
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 44555543 45788887766544332211111 12222 2678888888654 4778888776544322221111
Q ss_pred E-EEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 474 S-AVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 474 ~-~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
. ..+..-+|+..++| |.+.+||..+++-
T Consensus 399 ~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 399 YKSCALVFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred ccceEEEECCEEEEEC---CceEEecCCCCcE
Confidence 1 11122366666666 4578899877654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=81.04 E-value=82 Score=33.61 Aligned_cols=148 Identities=13% Similarity=0.213 Sum_probs=86.1
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCc------EEEEeCCC--C--eEEEEE-----e-cCC--------cEEEEEEeeCCCC
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKT------VRLWQVGI--D--RCLRVF-----S-HNN--------YVTSVAFNPVDDN 442 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~------V~iWdl~s--~--~~~~~~-----~-h~~--------~V~~i~fsp~d~~ 442 (755)
-+.+..|.+.+++ .+++.+.++. +..+++.. + ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 4567788998644 8888888888 66666543 1 111111 1 111 344788855 888
Q ss_pred EEEEEeCC------CcEEEEEcCCCeEEE-e---------------ccCCcceEEEEEccCCCeEEEEeCCC--------
Q 004410 443 YFISGSID------GKVRIWEVRRCQVVD-Y---------------TDIREIVSAVCYCPDGKGGIVGTMTG-------- 492 (755)
Q Consensus 443 ~l~sgs~D------g~V~iwdl~~~~~~~-~---------------~~~~~~V~~v~~spdg~~la~gs~dg-------- 492 (755)
++++.-.+ ..|+.++.. ++... + ........+++++|+|+.|+++....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 43321 1 12334588999999999776654422
Q ss_pred --------cEEEEECCC-CeEeeeeeEEeccc-ccCCCCCeEEEEEcCCCCCEEEE
Q 004410 493 --------NCRFYDIKD-NQLYQQNQICLQGK-KKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 493 --------~I~iwD~~~-~~~~~~~~~~~~~~-~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
.|..||..+ +.....+.+.+... .......|+.+.+.+ ++++++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 133455554 32333333322210 001456788899988 6665554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.86 E-value=19 Score=39.64 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=81.1
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC------CCCEEEEEeCCCcEEEEEcCC-CeEEEecc-----
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------DDNYFISGSIDGKVRIWEVRR-CQVVDYTD----- 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~------d~~~l~sgs~Dg~V~iwdl~~-~~~~~~~~----- 468 (755)
.+..+.....++-.|++.|+.+..+.....| -++|.|. ....-+.|-.+..|.-.|.+- +..+....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556677778888899999999998755555 6788872 112233444455555556543 22111111
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
.+....+..-. ..-++|+|+..|.|++||--.-.... ..+.-+..|..+..+. ++.++++++. ..+.+.
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKt--------alP~lG~aIk~idvta-~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKT--------ALPGLGDAIKHIDVTA-NGKHILATCK-NYLLLT 629 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhh--------cCcccccceeeeEeec-CCcEEEEeec-ceEEEE
Confidence 12223333333 33489999999999999965433211 1223456788888888 7777766654 344444
Q ss_pred E
Q 004410 549 C 549 (755)
Q Consensus 549 d 549 (755)
|
T Consensus 630 d 630 (776)
T COG5167 630 D 630 (776)
T ss_pred e
Confidence 4
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=80.65 E-value=1.4e+02 Score=36.02 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.2
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec----cCC----------------cceEEEEEccCCCeEE
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DIR----------------EIVSAVCYCPDGKGGI 486 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~----~~~----------------~~V~~v~~spdg~~la 486 (755)
....|.+|+... -+.+++....||+|.++|-.+-+.+... ... ..+..++|+|.+..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 456688888776 7778999999999999998776444222 111 1344578999999999
Q ss_pred EEeCCCcEE
Q 004410 487 VGTMTGNCR 495 (755)
Q Consensus 487 ~gs~dg~I~ 495 (755)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999865
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.64 E-value=26 Score=43.28 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++..++++..||.+..||++.+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7889999999999999999999975
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 755 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-16 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-16 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-16 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-16 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-16 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-16 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-16 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-16 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-16 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-16 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 8e-16 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-12 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-10 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-11 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 9e-10 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-09 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-09 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-09 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-09 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-09 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 4e-08 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 4e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 4e-06 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 7e-07 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-06 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-05 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 1e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-05 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 4e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 9e-05 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-04 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-04 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 4e-04 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 5e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 5e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 6e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.78 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.77 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.75 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.74 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.69 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.66 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.66 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.64 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.55 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.54 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.47 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.47 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.47 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.45 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.43 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.41 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.41 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.38 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.38 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.31 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.26 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.22 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.22 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.19 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.19 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.16 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.15 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.14 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.14 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.07 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.06 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.06 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.97 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.94 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.93 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.88 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.85 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.83 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.8 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.7 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.69 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.68 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.68 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.67 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.66 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.64 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.63 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.61 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.59 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.56 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.51 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.46 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.46 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.41 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.41 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.41 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.36 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.35 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.33 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.33 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.29 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.26 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.24 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.23 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.23 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.22 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.08 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.07 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.04 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.03 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.01 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.99 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.99 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.94 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.87 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.86 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.83 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.83 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.8 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.69 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.67 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.65 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.61 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.54 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.51 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.5 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.42 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.4 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.34 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.27 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.18 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.17 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.14 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.1 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.07 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.05 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.0 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.97 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.92 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.91 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.91 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.86 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.79 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.74 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.69 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.67 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.58 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.47 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.37 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.28 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.13 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.1 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.1 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.01 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.82 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.68 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.6 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.58 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.53 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.5 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.38 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.27 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.02 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.41 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.27 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.99 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.92 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.9 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.83 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.64 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.63 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.45 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.81 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.58 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 92.28 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.15 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.73 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 90.77 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 90.55 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.28 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.2 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 86.77 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.52 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 84.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 83.75 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 83.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 83.18 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.12 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 80.63 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=352.77 Aligned_cols=293 Identities=19% Similarity=0.306 Sum_probs=255.4
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+....+.+|.+.+.+++|+|++++|++|+.||+|+||+..... ....+..|...|.+++|+|++++||+|+.|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-------EEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-------cceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 3445678899999999999999999999999999999976543 234577899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++|++.+.... ......+.
T Consensus 119 ~~v~iw~~~~~~~~----------------------------------------------------------~~~~~~~~ 140 (340)
T 1got_B 119 NICSIYNLKTREGN----------------------------------------------------------VRVSRELA 140 (340)
T ss_dssp CEEEEEETTTCSBS----------------------------------------------------------CEEEEEEE
T ss_pred CeEEEEECccCCCc----------------------------------------------------------ceeEEEec
Confidence 99999998764310 01134567
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+|.+.|.++.|++++.+++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|+.|++||++++..+
T Consensus 141 ~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~ 219 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeE
Confidence 89999999999999999999999999999999999998885 999999999999 9999999999999999999998776
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|...|++++|+|++++|++|+.||+|++||+++++.+.... ...+...|++++|+| ++.+|++++.|+
T Consensus 220 ~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~g~~l~~g~~d~ 292 (340)
T 1got_B 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS------HDNIICGITSVSFSK-SGRLLLAGYDDF 292 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc------cCCcccceEEEEECC-CCCEEEEECCCC
Confidence 577889999999999999999999999999999999887654321 122345799999999 999999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.|++||..+....... .+|...|.+++|+|+|++|++|+.|+.|+|||
T Consensus 293 ~i~vwd~~~~~~~~~~--~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 293 NCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEEcccCcEeeEe--ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998876554443 67999999999999999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=380.98 Aligned_cols=340 Identities=18% Similarity=0.214 Sum_probs=273.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC--
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-- 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-- 305 (755)
...+.+|.+.+.+++|+|+|++||+|+.|++|+|||+...... ...++.+|.+.|.+++|+|||++||+++.+
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 3456778889999999999999999999999999997643221 224578899999999999999999998865
Q ss_pred --CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 306 --g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
+.|++|| .+.....+..+...+.++.|.++... .++.++.+..+.+|+.... +.+..
T Consensus 127 ~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~---------------~l~s~s~D~~v~lwd~~~~----~~~~~ 185 (611)
T 1nr0_A 127 RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPF---------------RIISGSDDNTVAIFEGPPF----KFKST 185 (611)
T ss_dssp CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSC---------------EEEEEETTSCEEEEETTTB----EEEEE
T ss_pred ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCe---------------EEEEEeCCCeEEEEECCCC----eEeee
Confidence 3677776 55566666666666677777665422 2445667778888875432 34678
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--------ecCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--------SHNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++|+| ++++|++++.|++|+
T Consensus 186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~ 264 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIK 264 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEE
Confidence 89999999999999999 9999999999999999999998887 5999999999999 999999999999999
Q ss_pred EEEcCCCeEEE--------------------------------------------eccCCcceEEEEEccCCCeEEEEeC
Q 004410 455 IWEVRRCQVVD--------------------------------------------YTDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 455 iwdl~~~~~~~--------------------------------------------~~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
+||+.+++++. +.+|...|++++|+|+|++|++++.
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 99998765432 2357788999999999999999999
Q ss_pred CCcEEEEECCCCeEeeeee---------EE-----------------------------------eccc-----------
Q 004410 491 TGNCRFYDIKDNQLYQQNQ---------IC-----------------------------------LQGK----------- 515 (755)
Q Consensus 491 dg~I~iwD~~~~~~~~~~~---------~~-----------------------------------~~~~----------- 515 (755)
||+|++||+.++....... +. +...
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 9999999998765432210 00 0000
Q ss_pred -------------------ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 516 -------------------KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 516 -------------------~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
...+...+.+++|+| ++++|++++.|+.|++||........... ..|...|++++|+||
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd 502 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN 502 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC
Confidence 001234578999999 89999999999999999987643322222 568899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~ 596 (755)
|++|++++.|+.|++|++.+
T Consensus 503 g~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp SSEEEEEETTSCEEEEEGGG
T ss_pred CCEEEEEcCCCCEEEEEcCC
Confidence 99999999999999999987
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=363.74 Aligned_cols=286 Identities=21% Similarity=0.324 Sum_probs=254.7
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+.+|...+.+++|+|++.+|++|+.||+|+|||+.+.. ..+.+.+|.+.|.+++|+|++++|++|+.|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 4577889999999999999999999999999999987543 335688999999999999999999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++. +..+.+|.
T Consensus 175 ~iwd~~~~~~--------------------------------------------------------------~~~~~~h~ 192 (410)
T 1vyh_C 175 KLWDFQGFEC--------------------------------------------------------------IRTMHGHD 192 (410)
T ss_dssp CEEETTSSCE--------------------------------------------------------------EECCCCCS
T ss_pred EEEeCCCCce--------------------------------------------------------------eEEEcCCC
Confidence 9999876543 33456799
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-E
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-D 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~ 465 (755)
..|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.++.|+| ++.+|++|+.|++|++||+.+++.. .
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 999999999999 99999999999999999999998885 999999999999 9999999999999999999998776 5
Q ss_pred eccCCcceEEEEEccC--------------------CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 466 YTDIREIVSAVCYCPD--------------------GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 466 ~~~~~~~V~~v~~spd--------------------g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
+..|...|.+++|+|+ |.+|++|+.||.|++||++++..+..+ ..|...|++
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--------~~h~~~v~~ 343 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--------VGHDNWVRG 343 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--------ECCCCcEEE
Confidence 7789999999999996 678999999999999999998876532 346788999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++|+| ++.+|++++.|+.|++||..+....... ..|...|++++|+|++.+|++|+.||.|+||++.
T Consensus 344 v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 344 VLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECS-SSSCEEEEETTTEEEEECCTTSCCCEEE--ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEE--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999 8999999999999999999876555444 6789999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=347.76 Aligned_cols=289 Identities=17% Similarity=0.287 Sum_probs=251.4
Q ss_pred ccceeeeeccCcceeecCC----CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 228 LGAMARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spd----g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
++...+|.+.|.+++|+|+ +.+|++|+.|++|+||++..... .....+.+|...|.+++|++++.+|++++
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----~~~~~l~gh~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----DLQWSLEGHQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----eeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence 3455678899999999985 56899999999999999764332 12345789999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+|||+.+++.+ ..
T Consensus 100 ~D~~i~lWd~~~~~~~--------------------------------------------------------------~~ 117 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQI--------------------------------------------------------------KS 117 (321)
T ss_dssp TTSEEEEEETTTTEEE--------------------------------------------------------------EE
T ss_pred CCCcEEEEECCCCCEE--------------------------------------------------------------EE
Confidence 9999999999887643 23
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
+..|...+.+++|+|++ +|++++.|+.|++||+.+++....+. |...|.+++|+| ++++|++|+.||.|++||++++
T Consensus 118 ~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~ 196 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATG 196 (321)
T ss_dssp EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 44567778889999999 99999999999999999998887774 788999999999 9999999999999999999999
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+.+ .+..|...|.+++|+|++++|++|+.||.|++||++++..... ...|...|++++|+| ++.+|++++
T Consensus 197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~sp-~~~~l~s~s 267 (321)
T 3ow8_A 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------LSGHASWVLNVAFCP-DDTHFVSSS 267 (321)
T ss_dssp EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------EcCCCCceEEEEECC-CCCEEEEEe
Confidence 877 5677889999999999999999999999999999998876543 234678899999999 889999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.|+.|+|||..+....... ..|...|.+++|+|+|++|++++.||.|+|||+.
T Consensus 268 ~D~~v~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTF--FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEeCCCCEEEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999887665554 6799999999999999999999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=350.56 Aligned_cols=305 Identities=19% Similarity=0.269 Sum_probs=236.0
Q ss_pred cccccccccceeeeeccCcceeecCCCCeeEEeeC------CCeEEEEECCCCcccccccccceeeecccccEEEEEEec
Q 004410 221 KRGWLKKLGAMARIIDRHGSATLKPGDHELTLGQR------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL 294 (755)
Q Consensus 221 ~~~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp 294 (755)
.+.|..+.....+|...|.+++|+|||++||+|+. |+.|++|+......... ......+|...|.+++|+|
T Consensus 28 ~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 28 GSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp ------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEET
T ss_pred ccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcC
Confidence 35566666666788889999999999999999997 78899998765432211 2234567999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++.+| +++.||+|+|||+.+++....
T Consensus 105 d~~~l-~~s~dg~v~lWd~~~~~~~~~----------------------------------------------------- 130 (357)
T 4g56_B 105 EKGIL-VASDSGAVELWEILEKESLLV----------------------------------------------------- 130 (357)
T ss_dssp TTEEE-EEETTSCEEEC--------CC-----------------------------------------------------
T ss_pred CCCEE-EEECCCEEEEeeccccceeEE-----------------------------------------------------
Confidence 98654 577899999999987653211
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
......+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||+
T Consensus 131 -----~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 131 -----NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp -----CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred -----EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 112345799999999999999 99999999999999999999999885 99999999999944468999999999
Q ss_pred EEEEEcCCCeEEE---eccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 453 VRIWEVRRCQVVD---YTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 453 V~iwdl~~~~~~~---~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
|++||+++++... ...+...+++++|+|+ +.+|++|+.|+.|++||+++++.... ...+...|++++|
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~ 277 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAY 277 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEE
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEE
Confidence 9999999887653 3456678999999997 56788999999999999998876543 2346778999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 529 SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++..+|++++.|++|+|||..+.... .. .+|...|++++|+| ++++|++++.||.|++|++....
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~--~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVF-RD--LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEE-EE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEe-EE--CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9966678999999999999998875433 22 57999999999998 89999999999999999997654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=340.08 Aligned_cols=298 Identities=19% Similarity=0.313 Sum_probs=248.2
Q ss_pred cccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
+.....+.+|.+.|.+++|+|++ ++|++|+.|++|++|++....... ....+.+.+|...|.+++|+|+|++|++|+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 44556788999999999999976 799999999999999975432211 123457889999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+|||+.+++. +..
T Consensus 85 ~D~~v~~wd~~~~~~--------------------------------------------------------------~~~ 102 (319)
T 3frx_A 85 WDKTLRLWDVATGET--------------------------------------------------------------YQR 102 (319)
T ss_dssp TTSEEEEEETTTTEE--------------------------------------------------------------EEE
T ss_pred CCCEEEEEECCCCCe--------------------------------------------------------------eEE
Confidence 999999999987753 344
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC-----CCCEEEEEeCCCcEEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~-----d~~~l~sgs~Dg~V~iwd 457 (755)
+.+|...|.+++|+|++ +|++++.|++|++||++.........|...|.++.|.|. ++.+|++++.|+.|++||
T Consensus 103 ~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 103 FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 67899999999999999 999999999999999976554444579999999999983 234899999999999999
Q ss_pred cCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 458 VRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 458 l~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+++.+.. .+..|...|.+++|+|+|++|++|+.||.|++||+.+++.+.... ....|.+++|+| ++.++
T Consensus 183 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~l 252 (319)
T 3frx_A 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWL 252 (319)
T ss_dssp TTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEE
T ss_pred CCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEE
Confidence 9998776 577899999999999999999999999999999999988765432 235799999999 88888
Q ss_pred EEEECCCcEEEEECCcceeeEEEe------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKAS------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
++++.+ .+++|+........... ...+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 253 a~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 887755 59999987643322221 1234567899999999999999999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=343.49 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=253.6
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+..+.+.+|.+.|.+++|+|++++||+|+.||+|+||+...... .+.+..|...|.+++|+|+|.+||+|+.
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------EHAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------EEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------ceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 345567889999999999999999999999999999999765432 2456778899999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|+.|++|++....... .......+
T Consensus 127 d~~i~v~~~~~~~~~~--------------------------------------------------------~~~~~~~~ 150 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN--------------------------------------------------------MAAKKKSV 150 (354)
T ss_dssp TSEEEEEECCCCTTCC--------------------------------------------------------SGGGCEEE
T ss_pred CCCEEEEEEecccccc--------------------------------------------------------ccccceee
Confidence 9999999985432100 00123456
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCC
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|+|. ++++|++|+.||+|++||++++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 6899999999999999 99999999999999999999998885 9999999999883 3689999999999999999998
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+++ .+..|...|++++|+|++.+|++|+.|++|++||++.+....... ...+...+++++|+| ++.+|++++
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~------~~~~~~~~~~~~~s~-~g~~l~~g~ 303 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS------KESIIFGASSVDFSL-SGRLLFAGY 303 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CTTCCSCEEEEEECT-TSSEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc------CCCcccceeEEEEeC-CCCEEEEEE
Confidence 877 567789999999999999999999999999999999886543211 112345789999999 899999999
Q ss_pred CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.|+.|++||..+....... .+|...|++++|+|+|++|++|+.|+.|+||+
T Consensus 304 ~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKGSRVSIL--FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCCceEEEE--ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999998776544443 68999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=346.29 Aligned_cols=310 Identities=20% Similarity=0.302 Sum_probs=245.3
Q ss_pred cccccceeeeec-cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIID-RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
+..+..+.+|.+ .+.+++|+|+|++||+|+.|++|+||+......... .....+|.+.|.+++|+|+|++||+|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEE
Confidence 345566777777 788899999999999999999999999765432111 112368999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|++|+||++..+.. ..+..
T Consensus 81 ~D~~v~iw~~~~~~~------------------------------------------------------------~~~~~ 100 (345)
T 3fm0_A 81 FDATTCIWKKNQDDF------------------------------------------------------------ECVTT 100 (345)
T ss_dssp TTSCEEEEEECCC-E------------------------------------------------------------EEEEE
T ss_pred CCCcEEEEEccCCCe------------------------------------------------------------EEEEE
Confidence 999999999865431 11345
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+.++. ++..+ .|...|.+++|+| ++++|++|+.|+.|++||+
T Consensus 101 ~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYRE 179 (345)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEE
T ss_pred ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEe
Confidence 77899999999999999 99999999999999998763 44444 4899999999999 9999999999999999999
Q ss_pred CCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee--------eEEecccccCCCCCeEEEE
Q 004410 459 RRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN--------QICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 459 ~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~--------~~~~~~~~~~~~~~I~~v~ 527 (755)
+++... .+..|...|++++|+|+|++|++|+.||+|++||+......... ..++......|...|++++
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 887533 57789999999999999999999999999999997432111000 0001111223678899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcce----ee--EEE-eeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCc
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVV----GK--FKA-SAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~----~~--~~~-~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|+| ++..|++++.|+.|++|+..... .. +.. ...+|...|++++|+|++ .+|++|+.||.|+||++.++++
T Consensus 260 ~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 260 WCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred Eec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 999 88899999999999999975421 11 111 124688999999999998 5999999999999999998774
Q ss_pred c
Q 004410 600 S 600 (755)
Q Consensus 600 ~ 600 (755)
.
T Consensus 339 ~ 339 (345)
T 3fm0_A 339 L 339 (345)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=345.75 Aligned_cols=305 Identities=17% Similarity=0.179 Sum_probs=235.1
Q ss_pred cccccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCc----ccccccccceeeecccccEEEEEEecCCCE
Q 004410 223 GWLKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQS----RELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (755)
Q Consensus 223 ~w~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~----~~~~~~~~~~~l~~H~~~V~~l~fspdg~~ 298 (755)
.|..+.....++...+.+++|+|||++|++++ |+++++|+..... ..............|...|.+++|+|++ .
T Consensus 18 ~w~~~~~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 18 EWNLPPNAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp -----CCSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred ccCCCCCCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 34333333444556678899999999999877 6677777632110 0000111112234577889999999985 6
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|+.||+|+|||+.+++.+..+
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~-------------------------------------------------------- 119 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVS-------------------------------------------------------- 119 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEE--------------------------------------------------------
T ss_pred EEEEECCCEEEEEeccCCCceeEe--------------------------------------------------------
Confidence 889999999999999887643211
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
...+.+|...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus 120 --~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 120 --KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp --EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred --eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 12356899999999999999 99999999999999999999999985 999999999999445689999999999999
Q ss_pred EcCCCeEEEe---ccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 457 EVRRCQVVDY---TDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 457 dl~~~~~~~~---~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
|+++++.... ..+...+++++|+|+ +++|++|+.||.|++||+++++.+.. ...|...|++++|+|++
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g 269 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHS 269 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSS
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCC
Confidence 9999876643 344567999999995 56788999999999999999887653 23467899999999955
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+|++++.|++|+|||...... +. ..+|...|++++|+|+++ +|++++.|++|++|++.+..
T Consensus 270 ~~~lasgs~D~~i~vwd~~~~~~-~~--~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 270 VPFLASLSEDCSLAVLDSSLSEL-FR--SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SCCEEEEETTSCEEEECTTCCEE-EE--ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEeCCCeEEEEECCCCcE-EE--EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 57899999999999999887542 22 378999999999999986 56799999999999998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=360.05 Aligned_cols=336 Identities=23% Similarity=0.342 Sum_probs=271.0
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.+.|.+++|+|||++||+|+.|+.|+|||... ...+++.+|.+.|++|+|+|||++||+++.|++|+
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~ 82 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 82 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 3778999999999999999999999999999999532 23457899999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC-----------------------------cc---------
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK-----------------------------EK--------- 351 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------------~~--------- 351 (755)
|||+ +++.+..+..+...+.++.|.++.... +....+. ..
T Consensus 83 vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 83 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp EEET-TSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEC-CCCEEEEEECCCCCEEEEEECCCCCEE-EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 9996 567777887777777777776654321 1110000 00
Q ss_pred ----------------------e-------eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-e
Q 004410 352 ----------------------I-------DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F 401 (755)
Q Consensus 352 ----------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~ 401 (755)
+ .....+.++.++.+.+|+ ...+.+..+.+|...|.+++|+|++ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~-----~~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC-----TTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe-----CCCcEEEEEecCCCCEEEEEECCCCCE
Confidence 0 000112233344444444 3356677889999999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp 480 (755)
|++++.|+.|++||.. ++.+..+ .|...|++++|+| ++++|++++.|+.|++||........+..|...|.+++|+|
T Consensus 236 l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 236 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp EEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECC
Confidence 9999999999999975 4555555 5999999999999 99999999999999999987766667888999999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 481 dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+++.|++++.||.|++||+....+.. ...+...|++++|+| ++.+|++++.|+.|++|+.... . ...
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~-~--~~~ 380 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-L--LQT 380 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCC-E--EEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCC-E--EEE
Confidence 99999999999999999988765432 234667899999999 8999999999999999996432 2 222
Q ss_pred eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
...|...|.+++|+|+|++|++++.|+.|++||..
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 36788999999999999999999999999999964
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=355.11 Aligned_cols=308 Identities=21% Similarity=0.299 Sum_probs=256.5
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|.+.|.+++|+|++++|++|+.|++|+||+..... ....+.+|...|.+++|+|+|++||+|+.|+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 445688899999999999999999999999999999976543 2346788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|+||++.+...... .......+.+
T Consensus 131 ~v~iw~~~~~~~~~~-------------------------------------------------------~~~~~~~~~g 155 (380)
T 3iz6_a 131 ACSIFNLSSQADRDG-------------------------------------------------------NMPVSRVLTG 155 (380)
T ss_dssp CCEEEECCCCSSCCC-------------------------------------------------------SSTTCCBCCC
T ss_pred cEEEEECCCCccccC-------------------------------------------------------CccceeeccC
Confidence 999999865421000 0012345678
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
|.+.|.++.|+|++ .|++++.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 99999999999975 7999999999999999999999887 388899999998878899999999999999999
Q ss_pred CC-Ce-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 459 RR-CQ-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 459 ~~-~~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
+. .+ +..+..|...|++++|+|++++|++|+.||+|++||++++..+....... .....+...|++++|+| ++.+|
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l 313 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSI-SGRLL 313 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECS-SSSEE
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECC-CCCEE
Confidence 84 33 33677899999999999999999999999999999999998765432211 11112234589999999 89999
Q ss_pred EEEECCCcEEEEECCcceeeEEE--eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKA--SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++.|+.|++||.......... ....|.+.|++++|+|+|++|++|+.|+.|+||++...+
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999998765544332 114688999999999999999999999999999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=341.07 Aligned_cols=300 Identities=19% Similarity=0.266 Sum_probs=242.3
Q ss_pred cccccceeeeeccCcceee-----cC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCE
Q 004410 225 LKKLGAMARIIDRHGSATL-----KP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY 298 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~-----sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~ 298 (755)
......+.+|.+.|.+++| +| ++++|++|+.|++|+||++...............+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3455678889999999999 76 99999999999999999986543211112234568899999999999999999
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|+.|++|+|||+.+++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~------------------------------------------------------------ 110 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTT------------------------------------------------------------ 110 (343)
T ss_dssp EEEEETTSEEEEEETTSSCE------------------------------------------------------------
T ss_pred EEEEcCCCcEEEEECCCCcE------------------------------------------------------------
Confidence 99999999999999977643
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCC----------CEE
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDD----------NYF 444 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~----------~~l 444 (755)
+..+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|
T Consensus 111 --~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 111 --YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYF 187 (343)
T ss_dssp --EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEE
T ss_pred --EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEE
Confidence 34567899999999999999 9999999999999999854443333 4888999999999 55 799
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
++++.|+.|++||........+..|...|.+++|+|+|++|++|+.||.|++||+........ ...+...|+
T Consensus 188 ~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~--------~~~~~~~v~ 259 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR--------EFDAGSTIN 259 (343)
T ss_dssp EEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE--------EEECSSCEE
T ss_pred EEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce--------eecCCCcEE
Confidence 999999999999965555557788999999999999999999999999999999954332111 011345799
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEe---------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KAS---------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~---------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+++|+| ++.+++ ++.|+.|++|+..+..... ... ..+|...|.+++|+|+|++|++|+.||.|++|+
T Consensus 260 ~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 260 QIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred EEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 999999 777665 4568889999987643322 111 015777899999999999999999999999999
Q ss_pred cCCC
Q 004410 594 YSNQ 597 (755)
Q Consensus 594 ~~~~ 597 (755)
+.++
T Consensus 338 ~~~g 341 (343)
T 2xzm_R 338 FETS 341 (343)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=367.16 Aligned_cols=348 Identities=18% Similarity=0.246 Sum_probs=268.5
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
...+.+|...+.+++|+|++. .|++|+.|++|++|+.... ...+.+.+|.+.|++++|+|||++||+|+.|+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence 345678888999999999997 5999999999999996542 23456889999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeee-------cCCCCCceeEEeeCCCC--------ceeEEeecCcceee-----------------
Q 004410 307 TVRVWKVIEHERLDGFD-------VQDTDPSCLYFTINHLS--------QLIPIDVDKEKIDK----------------- 354 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~----------------- 354 (755)
+|+|||+.+++.+..+. .+...+.++.|.++... .+..++........
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999999998877763 45556667777665421 11222222111110
Q ss_pred --eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE------
Q 004410 355 --TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------ 425 (755)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------ 425 (755)
...+..+.++.+.+|+... ..+...+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~----~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPEL----GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTT----TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred cCCEEEEEeCCCcEEEEeCCC----CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 0112223344444444322 22456778999999999999999 9999999999999999876543321
Q ss_pred -----------------------------------------------------------------------------ecC
Q 004410 426 -----------------------------------------------------------------------------SHN 428 (755)
Q Consensus 426 -----------------------------------------------------------------------------~h~ 428 (755)
.|.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 123
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~~ 505 (755)
..+.+++|+| ++++|++|+.|++|++||+.++... ....|...|++++|+|||++|++++.|++|++||+.+ +++.
T Consensus 449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee
Confidence 4578899999 9999999999999999999887542 3467889999999999999999999999999999987 5443
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEe
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs 584 (755)
.. .....|...|++++|+| ++++|++++.|++|+||+.............+| ...|.+++|+|+++ |++++
T Consensus 528 ~~------~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~ 599 (611)
T 1nr0_A 528 HT------NSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAG 599 (611)
T ss_dssp CC------CCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEE
T ss_pred ee------eeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEec
Confidence 21 01223778999999999 899999999999999999886543321222567 78999999999998 99999
Q ss_pred CCCcEEEEEcC
Q 004410 585 EDSNIYIWNYS 595 (755)
Q Consensus 585 ~Dg~I~iWd~~ 595 (755)
.|++|++|++.
T Consensus 600 ~D~~i~lW~~~ 610 (611)
T 1nr0_A 600 QDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEECC
T ss_pred CCCCEEEEecc
Confidence 99999999973
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=331.14 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=245.2
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+++.+|.+.|.+++|+|++++|++|+.||+|+||++.... ..+.+.+|...|.+++|+|++++|++|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 345688899999999999999999999999999999986543 2356788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.+++. +..+.+
T Consensus 78 ~i~vwd~~~~~~--------------------------------------------------------------~~~~~~ 95 (304)
T 2ynn_A 78 RIRVFNYNTGEK--------------------------------------------------------------VVDFEA 95 (304)
T ss_dssp EEEEEETTTCCE--------------------------------------------------------------EEEEEC
T ss_pred EEEEEECCCCcE--------------------------------------------------------------EEEEeC
Confidence 999999987653 345678
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|...|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|++++|+|.++.+|++|+.|++|++||+++...
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC
T ss_pred CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 99999999999999 9999999999999999887 444555 59999999999996788999999999999999987653
Q ss_pred E--EeccCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 V--DYTDIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ~--~~~~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. ....+...+..++|+| ++.+|++|+.||+|++||+++++.+..+ ..|...|+.++|+| ++.+|+++
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--------~~h~~~v~~~~~~p-~~~~l~s~ 246 (304)
T 2ynn_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--------EGHMSNVSFAVFHP-TLPIIISG 246 (304)
T ss_dssp SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECS-SSSEEEEE
T ss_pred cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--------CCCCCCEEEEEECC-CCCEEEEE
Confidence 3 3345667899999987 7789999999999999999998876542 34678899999999 88999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC--EEEEEeCCCcEEEEEcCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK--HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~--~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.|++|+|||..+....... ..+...+.+++|+|++. +|++|+. ..+.+|++.+.
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~~ 303 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGND 303 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEE--CCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC--
T ss_pred cCCCeEEEEECCCCceeeec--cCCCccEEEEEECCCCCceEEEEecC-CceEEEEeccC
Confidence 99999999999876555444 56788999999999885 5676665 46888887653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=328.83 Aligned_cols=305 Identities=19% Similarity=0.280 Sum_probs=230.9
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ec-ccccEEEEEEecCCCEEEEEcC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LA-HEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~fspdg~~LaSgs~ 304 (755)
.+..+.+|.+.+.+++|+|+ +||+|+.|++|+||++...... ....+ .+ |.+.|.+++|+|++++||+|+.
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----LIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----EEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----EEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 34567788899999999998 9999999999999998753211 12233 34 9999999999999999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|++|+||++....... ....++..+
T Consensus 79 D~~v~iw~~~~~~~~~-------------------------------------------------------~~~~~~~~~ 103 (330)
T 2hes_X 79 DSTVSIWAKEESADRT-------------------------------------------------------FEMDLLAII 103 (330)
T ss_dssp TSCEEEEEC--------------------------------------------------------------CCCEEEEEE
T ss_pred CCcEEEEEcccCcCcc-------------------------------------------------------ccceeEEEE
Confidence 9999999985431000 001224567
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC----CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI----DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s----~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+|...|.+++|+|++ +|++++.|++|++||+.. .+++..+ .|...|++++|+| ++.+|++|+.|++|++||+
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKD 182 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999 999999999999999943 2566666 4999999999999 9999999999999999999
Q ss_pred CCC--eEE-EeccCCcceEEEEEccC--CCeEEEEeCCCcEEEEECCCCeEeeeeeE-EecccccCCCCCeEEEEEcCCC
Q 004410 459 RRC--QVV-DYTDIREIVSAVCYCPD--GKGGIVGTMTGNCRFYDIKDNQLYQQNQI-CLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 459 ~~~--~~~-~~~~~~~~V~~v~~spd--g~~la~gs~dg~I~iwD~~~~~~~~~~~~-~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.++ +++ .+..|...|.+++|+|+ +..|++|+.|++|++||+.++........ ........|...|++++|++ +
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~ 261 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N 261 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C
Confidence 876 333 57789999999999998 77899999999999999875421000000 01111123678899999997 4
Q ss_pred CCEEEEEECCCcEEEEECCcceeeE-EEeeeccCC-ceEEEEEec--CCCEEEEEeCCCcEEEEEcCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKF-KASAFRVAG-SQMFATFTS--DGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~-~v~~l~fsp--dg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+|++++.|+.|+||+..+..... ......|.. .|.+++|+| ++++|++|+.||.|+||++..
T Consensus 262 -~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 -GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 489999999999999987653222 222245666 899999999 789999999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=322.16 Aligned_cols=290 Identities=22% Similarity=0.345 Sum_probs=246.6
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
...+.+|.+.+.+++|+|++++|++|+.||.|+||+..... ..+.+.+|...|.+++|+|++++|++++.|+.
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 44577888899999999999999999999999999976543 23467899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.+++. +..+.+|
T Consensus 89 i~vwd~~~~~~--------------------------------------------------------------~~~~~~~ 106 (312)
T 4ery_A 89 LKIWDVSSGKC--------------------------------------------------------------LKTLKGH 106 (312)
T ss_dssp EEEEETTTCCE--------------------------------------------------------------EEEEECC
T ss_pred EEEEECCCCcE--------------------------------------------------------------EEEEcCC
Confidence 99999977643 3445679
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.||.|++||+++++.+.
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceee
Confidence 9999999999999 99999999999999999999988885 889999999999 99999999999999999999988764
Q ss_pred e--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 466 Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 466 ~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
. ..+...+..++|+|++++|++++.||.|++||+++++...... ++. .........+++.++.+|++++.|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT----GHK--NEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC----SSC--CSSSCCCEEEECSSSCEEEECCTTS
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE----ecC--CceEEEEEEEEeCCCcEEEEECCCC
Confidence 2 3456689999999999999999999999999999988765322 111 1112223445554889999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe--CCCcEEEEEcC
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS--EDSNIYIWNYS 595 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs--~Dg~I~iWd~~ 595 (755)
.|++||..+....... .+|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 260 ~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 260 LVYIWNLQTKEIVQKL--QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEETTTCCEEEEE--CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEECCCchhhhhh--hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999876554444 67999999999999999999997 69999999964
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=335.14 Aligned_cols=298 Identities=21% Similarity=0.322 Sum_probs=241.1
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccc------------eeeecccccEEEEEEecCCCEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTG------------QEFLAHEGSILTMKFSLDGQYLA 300 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~------------~~l~~H~~~V~~l~fspdg~~La 300 (755)
.|...+.+++|+|+|++||+|+ ++.++||++..+..... +... .....+...|.+++|+|||++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 5778899999999999999987 68999999876543211 1000 00012334599999999999999
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
+|+.|+.|+|||+.+++.
T Consensus 140 s~~~d~~i~iwd~~~~~~-------------------------------------------------------------- 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKI-------------------------------------------------------------- 157 (393)
T ss_dssp EEETTSCEEEEETTTTEE--------------------------------------------------------------
T ss_pred EEcCCCeEEEEECCCCcE--------------------------------------------------------------
Confidence 999999999999977643
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 34467899999999999999 99999999999999999999999999999999999999788999999999999999999
Q ss_pred CCeEEEe--------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE----ecccccCCCCCeEEEE
Q 004410 460 RCQVVDY--------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC----LQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 ~~~~~~~--------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~----~~~~~~~~~~~I~~v~ 527 (755)
++..+.. ..|...|++++|+|+|++|++|+.||.|++||+++.......... .......|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 9877632 468889999999999999999999999999999875432211100 0011234677899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec------CCCEEEEEeCCCcEEEEEcCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS------DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp------dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|+| ++.+|++++.|+.|++||..+....... .+|...|.+++|++ ++.+|++|+.||.|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEE--CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 8899999999999999999876655444 67999999999986 6889999999999999998654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=346.83 Aligned_cols=321 Identities=25% Similarity=0.369 Sum_probs=264.4
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
+..+.+|...+.+++|+|+++.|++++.|+.|++|+.... ..+.+.+|.+.|++++|+|++++|++++.|+.
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 3445667777888999999999999999999999996432 23467899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++|++... .+..+..+...+.++.+.++.. ....+..++.+.+|+. ..+.+..+.+|
T Consensus 327 i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~----------------~l~~~~~dg~v~~~~~-----~~~~~~~~~~~ 384 (577)
T 2ymu_A 327 VKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ----------------TIASASDDKTVKLWNR-----NGQLLQTLTGH 384 (577)
T ss_dssp EEEEETTSC-EEEEECCCSSCEEEEEECTTSS----------------EEEEEETTSEEEEEET-----TCCEEEEEECC
T ss_pred EEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC----------------EEEEEeCCCEEEEEcC-----CCCEEEEecCC
Confidence 999997654 3445555555555555554432 1233445666666653 34567788999
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
...|.+++|+|++ +|++++.|+.|++||.. ++.+..+ .|...|++++|+| ++++|++++.|+.|++||+....+..
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~ 462 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQT 462 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEE
Confidence 9999999999999 99999999999999964 5555555 5999999999999 99999999999999999987766668
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
+..|...|++++|+|++++|++++.|+.|++||.. ++.+.. ...|...|++++|+| ++++|++++.|+.|
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~--------~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT--------LTGHSSSVRGVAFSP-DGQTIASASDDKTV 532 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEE--------EECCSSCEEEEEECT-TSSCEEEEETTSEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEE--------EeCCCCCEEEEEEcC-CCCEEEEEECcCEE
Confidence 88999999999999999999999999999999964 444432 234678999999999 89999999999999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+|||... .. .....+|...|++++|+|||++|+|++.|++|++||
T Consensus 533 ~lwd~~~-~~--~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 533 KLWNRNG-QL--LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTS-CE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCCC-CE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999643 22 223367999999999999999999999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=315.85 Aligned_cols=295 Identities=20% Similarity=0.337 Sum_probs=243.5
Q ss_pred cceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.++.+|.+.|.+++|+|+ +++||+|+.|++|+||++...... .....+.+.+|.+.|.+++|+|+|++|++++.|+.
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC--SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc--cceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 468899999999999998 579999999999999998764432 12344678899999999999999999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++|+....... .....+
T Consensus 110 i~~~~~~~~~~~--------------------------------------------------------------~~~~~~ 127 (340)
T 4aow_A 110 LRLWDLTTGTTT--------------------------------------------------------------RRFVGH 127 (340)
T ss_dssp EEEEETTTTEEE--------------------------------------------------------------EEEECC
T ss_pred ceEEeeccccee--------------------------------------------------------------eeecCC
Confidence 999998766432 223446
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...+..+.+++++ .|++++.|+.+++||+......... .|...|.+++|++.. ..++++++.|+.|++||+++++.
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 6778888999988 9999999999999999877665443 488999999998832 35788999999999999999987
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .+..|...|++++|+|++++|++|+.||.|++||+++.+.+.... +...|..+.|+| ++. +++++.|
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-~~~-~~~~~~d 276 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---------GGDIINALCFSP-NRY-WLCAATG 276 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CSSCEEEEEECS-SSS-EEEEEET
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------CCceEEeeecCC-CCc-eeeccCC
Confidence 7 567889999999999999999999999999999999988765322 245799999999 554 5566779
Q ss_pred CcEEEEECCcceeeEEE-------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKA-------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~-------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|+|||.......... ....|...|++++|+|||++|++|+.||.|+|||+.+|.
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999998765433222 124578899999999999999999999999999999885
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=312.74 Aligned_cols=251 Identities=18% Similarity=0.279 Sum_probs=220.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|.+++|+|++++|++|+.||+|+|||+.++..
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------------------------------- 47 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------------------------------- 47 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------------------------------
Confidence 4567899999999999999999999999999999999987653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS 433 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~ 433 (755)
+..+.+|...|.+++|++++ +|++++.|++|++||+.+++++..+. |...|++
T Consensus 48 -------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 102 (304)
T 2ynn_A 48 -------------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRS 102 (304)
T ss_dssp -------------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -------------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 33456788999999999999 99999999999999999999988885 9999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
++|+| ++.+|++|+.|++|++||++++. +. .+..|...|.+++|+| ++..|++|+.||+|++||+.........
T Consensus 103 ~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~-- 179 (304)
T 2ynn_A 103 IAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-- 179 (304)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--
T ss_pred EEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--
Confidence 99999 99999999999999999999874 33 5678999999999999 6789999999999999999876644321
Q ss_pred EecccccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 511 CLQGKKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
...+...+..+.|+|. ++.+|++++.|+.|++||..+....... .+|...|.+++|+|++++|++|+.||.|
T Consensus 180 -----~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 180 -----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--EGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (304)
T ss_dssp -----ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -----ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee--CCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence 1234567899999873 5679999999999999999886655554 7799999999999999999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
+|||+.+++
T Consensus 253 ~iWd~~~~~ 261 (304)
T 2ynn_A 253 KIWNSSTYK 261 (304)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999998876
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=324.99 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=203.2
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC------CCcEEEEEcc
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVI 314 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~------Dg~I~vWdv~ 314 (755)
+.+.+++.++. +..+.....|++... ...+|++.|.+++|||||++||+|+. |+.|++|+..
T Consensus 11 ~d~g~~~~~~~-~~g~~~~~~w~~p~~-----------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 11 VDLGTENLYFQ-SNGSSKGSAWGRPVT-----------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp -----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC
T ss_pred CCCCccceEEe-cCCCccccccCCCCC-----------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC
Confidence 55556665544 444567788885421 23469999999999999999999997 5667777765
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.... .......+|...|.++
T Consensus 79 ~~~~~~----------------------------------------------------------~~~~~~~~~~~~V~~~ 100 (357)
T 4g56_B 79 EGAPNE----------------------------------------------------------SLCTAGVQTEAGVTDV 100 (357)
T ss_dssp C---CG----------------------------------------------------------GGCSEEEECSSCEEEE
T ss_pred CCCcce----------------------------------------------------------eEecccCCCCCCEEEE
Confidence 553211 1123345688999999
Q ss_pred EEcCCCeEEEEeCCCcEEEEeCCCCeEEEE-----EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRV-----FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 395 ~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~-----~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
+|+|++.+++++.||+|+|||+.+++.+.. ..|...|++++|+| ++++|++|+.|+.|++||+.+++++ .+..
T Consensus 101 ~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 101 AWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp EEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999999888899999999999998876532 24899999999999 9999999999999999999999877 5678
Q ss_pred CCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 469 IREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 469 ~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
|...|++++|+|++. .+++++.||.|++||+++++...... ...+...+++++|+|+++.+|++++.|+.|++
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~ 253 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee------eccccccccchhhhhcccceEEEeecccceeE
Confidence 899999999999875 78899999999999999887654221 23356679999999977889999999999999
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||+.+....... ..|...|++++|+|++ ++|++|+.|++|+|||+.+++
T Consensus 254 wd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 254 VNIKNPDSAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EESSCGGGCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EECCCCcEeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 999886655554 6788999999999987 579999999999999987654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=309.44 Aligned_cols=283 Identities=18% Similarity=0.302 Sum_probs=247.2
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee--cccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
.|...+.+++|+|++++|++++ ||.|+||++....... ....+. +|...|.+++|+|++++|++++.||.|++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 5677889999999999999999 9999999987643211 112233 79999999999999999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.. ....+.+|...
T Consensus 124 ~d~~~~~~~------------------------------------------------------------~~~~~~~~~~~ 143 (337)
T 1gxr_A 124 WDLAAPTPR------------------------------------------------------------IKAELTSSAPA 143 (337)
T ss_dssp EECCCC--E------------------------------------------------------------EEEEEECSSSC
T ss_pred EECCCCCcc------------------------------------------------------------eeeecccCCCc
Confidence 998765411 13345678899
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+....
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec
Confidence 9999999999 99999999999999999999988885 899999999999 99999999999999999999999887778
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
+...+.+++|+|++++|++++.+|.|++||+.++.... ...+...|++++|+| ++.+|++++.|+.|++|
T Consensus 223 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEE
Confidence 88999999999999999999999999999999886532 234677899999999 89999999999999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+..+...... ..|...+.+++|+|++++|++++.||.|++|++
T Consensus 293 ~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEE---EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEE---ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9987655533 457889999999999999999999999999997
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=324.06 Aligned_cols=328 Identities=15% Similarity=0.222 Sum_probs=260.0
Q ss_pred eeccCcceeecCCCC-eeEEeeCCCeEEEEEC----CCCcc-----ccccc----ccceeeecccccEEEEEEecCCCEE
Q 004410 234 IIDRHGSATLKPGDH-ELTLGQRMRRVRVHPV----KKQSR-----ELSSL----YTGQEFLAHEGSILTMKFSLDGQYL 299 (755)
Q Consensus 234 ~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~----~~~~~-----~~~~~----~~~~~l~~H~~~V~~l~fspdg~~L 299 (755)
|.+.+.+++|+|+++ +||+|+.||.|+||++ ..... ....+ .......+|.+.|.+++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 347899999999999 9999999999999998 54441 01100 0001122378899999999999999
Q ss_pred EEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 300 ASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 300 aSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
++++.||.|+||+ .+++.+..+..+...+.++.|.++.. .++..+.++.+.+|+... .+
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~l~~~~~d~~i~iwd~~~----~~ 182 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT----------------HIISMDVENVTILWNVIS----GT 182 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS----------------EEEEEETTCCEEEEETTT----TE
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC----------------EEEEEecCCeEEEEECCC----Cc
Confidence 9999999999999 67777777777766667777665432 122344556666666543 23
Q ss_pred cceEecCCCCC---------------EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 380 PLHEFQGHSSE---------------VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 380 ~~~~~~gh~~~---------------V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
.+..+..|... +.+++|++++.+++++.|+.|++||+.+++.+..+ .|...|++++|+| ++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCE
Confidence 44555666555 99999999999999999999999999999888777 4899999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
|++++.|+.|++||+++++.+ .+..|...|.+++|+|++ .|++++.||.|++||+.+++.+... ..+...
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~ 332 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVP 332 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCC
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCcc
Confidence 999999999999999987765 456688999999999999 9999999999999999998876532 235678
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcce--------------------eeEEEeeeccCC--ceEEEEEecCCCEE
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--------------------GKFKASAFRVAG--SQMFATFTSDGKHV 580 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--------------------~~~~~~~~~~~~--~v~~l~fspdg~~L 580 (755)
|++++|+| ++.+|++++.|+.|++||..+.. .... ...|.. .|++++|+|++++|
T Consensus 333 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l 409 (425)
T 1r5m_A 333 IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS--YQSSQDNDYIFDLSWNCAGNKI 409 (425)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE--ECCTTCCCCEEEEEECTTSSEE
T ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh--hcCcccCCceEEEEccCCCceE
Confidence 99999999 89999999999999999988755 2222 255655 99999999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 004410 581 VSPSEDSNIYIWNYS 595 (755)
Q Consensus 581 ~sgs~Dg~I~iWd~~ 595 (755)
++++.||.|++|+++
T Consensus 410 ~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 410 SVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEESSSCCEEEECC
T ss_pred EEEecCceEEEEeec
Confidence 999999999999986
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=368.57 Aligned_cols=341 Identities=21% Similarity=0.283 Sum_probs=282.3
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.+.+.+++|+|+|++||+|+.||+|+||+..+.. ....+.+|.+.|.+++|+|+|++||+++.||.|+
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 355788889999999999999999999999999987643 3346789999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
|||+.+++.+..+..+...+.++.|.+.....+ ...++.++.+.+|+... ...+..+.+|..
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------l~sg~~d~~v~vwd~~~----~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL--------------LATGSNDFFLKLWDLNQ----KECRNTMFGHTN 744 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCE--------------EEEEETTSCEEEEETTS----SSEEEEECCCSS
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceE--------------EEEEeCCCeEEEEECCC----cchhheecCCCC
Confidence 999999999999888888788887776543322 33456677777777654 345678889999
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-------------------------------------------
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF------------------------------------------- 425 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~------------------------------------------- 425 (755)
.|.+++|+|++ .|++++.||+|++||+.+++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 99999999999 9999999999999998876554332
Q ss_pred -------------ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCC
Q 004410 426 -------------SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 426 -------------~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.|...|.+++|+| +++++++++.||.|++||+.++..+ .+..|...|++++|+|+|+.|++++.|
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence 3667899999999 9999999999999999999998877 577899999999999999999999999
Q ss_pred CcEEEEECCCCeEee------eee-----------------------EEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 492 GNCRFYDIKDNQLYQ------QNQ-----------------------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 492 g~I~iwD~~~~~~~~------~~~-----------------------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
|.|++||+.+..... ... .............+++++|+| ++.++++++.+
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~ 982 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDED 982 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETT
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCC
Confidence 999999976421100 000 000000112356799999999 89999999999
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|.|++|+..+....... ..|...|++++|+|+|++|++++.||.|++||+.+++.
T Consensus 983 g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp SCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred CCEEEEEcCCCceeeec--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 99999999876554444 67899999999999999999999999999999998863
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=344.09 Aligned_cols=295 Identities=21% Similarity=0.340 Sum_probs=242.9
Q ss_pred cccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 225 LKKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
++....+.+|.+.|.+++|+|++ ++|++|+.|++|+||++........ ...+.+.+|.+.|.+++|+|++++|++|+
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 44445688999999999999976 6899999999999999876443211 23356889999999999999999999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.||+|+|||+.++.. +..
T Consensus 450 ~Dg~v~vwd~~~~~~--------------------------------------------------------------~~~ 467 (694)
T 3dm0_A 450 WDGELRLWDLAAGVS--------------------------------------------------------------TRR 467 (694)
T ss_dssp TTSEEEEEETTTTEE--------------------------------------------------------------EEE
T ss_pred CCCcEEEEECCCCcc--------------------------------------------------------------eeE
Confidence 999999999977653 334
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCC--CEEEEEeCCCcEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDD--NYFISGSIDGKVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~--~~l~sgs~Dg~V~iw 456 (755)
+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++|+.|++|++|
T Consensus 468 ~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEE
T ss_pred EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEE
Confidence 66899999999999999 9999999999999998766554443 3888999999999 54 689999999999999
Q ss_pred EcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 457 EVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 457 dl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
|++++++. .+..|...|++++|+|+|++|++|+.||.|++||+.+++.+... .+...|.+++|+| ++.+
T Consensus 547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~ 616 (694)
T 3dm0_A 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYW 616 (694)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcE
Confidence 99998877 57789999999999999999999999999999999999876432 1345799999999 7777
Q ss_pred EEEEECCCcEEEEECCcceeeEEEee-----------------eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASA-----------------FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~-----------------~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+++++ ++.|+|||+.+......... ..+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 617 l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 617 LCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 76665 56699999887544332210 0112247899999999999999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=321.08 Aligned_cols=248 Identities=23% Similarity=0.372 Sum_probs=223.2
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------------------------------- 142 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------------------------------- 142 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------------------
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------------------------
Confidence 45789999999999999999999999999999999977642
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~ 435 (755)
...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ .|...|.+++
T Consensus 143 -----------------------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 143 -----------------------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp -----------------------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred -----------------------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 34567899999999999999 9999999999999999999998888 4999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+| ++++|++|+.|++|++||++++.++ .+..|...|.+++++|+|.+|++|+.||.|++||+.++.....
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------- 271 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------- 271 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-------
Confidence 999 9999999999999999999998876 5778999999999999999999999999999999998876543
Q ss_pred cccCCCCCeEEEEEcCCC-------------------CCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 515 KKKLPGKRITGFQFSPSD-------------------PSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d-------------------~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
...|...|.+++|+|.. +.+|++++.|+.|++||..+....... .+|...|.+++|+|
T Consensus 272 -~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~ 348 (410)
T 1vyh_C 272 -LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHS 348 (410)
T ss_dssp -ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECS
T ss_pred -ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--ECCCCcEEEEEEcC
Confidence 23467889999999942 568999999999999999887655554 67999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|++|++|+.|+.|+|||+.+++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999998765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=308.42 Aligned_cols=249 Identities=23% Similarity=0.380 Sum_probs=218.0
Q ss_pred eeeecccccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+.+++|.+.|++++|+|+ +.+||||+.|++|+||++.++...
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------------------- 71 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------------------- 71 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------------------------------
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------------------------------
Confidence 345789999999999985 679999999999999998655321
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcE
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYV 431 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V 431 (755)
....+.+|...|.+++|++++ .+++++.|++|++||+.+++++..+. +...+
T Consensus 72 --------------------------~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~ 125 (321)
T 3ow8_A 72 --------------------------LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA 125 (321)
T ss_dssp --------------------------EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCC
T ss_pred --------------------------eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccE
Confidence 123567899999999999999 99999999999999999999998885 77889
Q ss_pred EEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeE
Q 004410 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510 (755)
Q Consensus 432 ~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~ 510 (755)
.+++|+| ++++|++|+.||.|++||+++++.. .+..+...|.+++|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 126 ~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~--- 201 (321)
T 3ow8_A 126 WTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT--- 201 (321)
T ss_dssp CCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---
Confidence 9999999 9999999999999999999988766 5667788899999999999999999999999999999987653
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|...|++++|+| ++.+|++++.|+.|+|||.......... .+|...|.+++|+|++++|++++.|+.|+
T Consensus 202 -----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 202 -----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL--SGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp -----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEE--cCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 234667899999999 8999999999999999999876554443 77999999999999999999999999999
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
|||+.+++
T Consensus 274 iwd~~~~~ 281 (321)
T 3ow8_A 274 VWDVGTRT 281 (321)
T ss_dssp EEETTTTE
T ss_pred EEeCCCCE
Confidence 99998776
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.78 Aligned_cols=335 Identities=12% Similarity=0.186 Sum_probs=265.6
Q ss_pred eccCcceeecCCCC-eeEEe----------eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc
Q 004410 235 IDRHGSATLKPGDH-ELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasg----------s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs 303 (755)
...+.+++|+|+++ +|++| +.|+.|+||++...... .... ...|...|.+++|+|++++|++++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~-~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIA-SLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSC-CCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEE-EEecCCceEEEEECCCCCeEEEEc
Confidence 35678899999997 99999 88999999998765421 0111 235889999999999999999999
Q ss_pred CCCcEEEEEccC----CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec---
Q 004410 304 EDGTVRVWKVIE----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--- 376 (755)
Q Consensus 304 ~Dg~I~vWdv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 376 (755)
.||.|+||++.+ .+.+..+..+...+.++.|.++.... .+.++.++.+.+|+......
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---------------l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV---------------LASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTB---------------EEEECSSSCEEBCBTTTTSSCTT
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCE---------------EEEEcCCCeEEEEECCCCccccc
Confidence 999999999987 34666777777777888877653332 23445566777776654331
Q ss_pred --cCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEEEEEe-c------CCcEEEEEEeeCCCCEEE
Q 004410 377 --LEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVFS-H------NNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 377 --~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h------~~~V~~i~fsp~d~~~l~ 445 (755)
....+..+.+|...|.+++|+|+ + .|++++.|+.|++||+.+++++..+. + ...|++++|+|.+..+|+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 01112334689999999999998 4 89999999999999999999998886 3 788999999993347999
Q ss_pred EEeCCC---cEEEEEcCCC-eEE-Eec-cCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 446 SGSIDG---KVRIWEVRRC-QVV-DYT-DIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 446 sgs~Dg---~V~iwdl~~~-~~~-~~~-~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
+++.|+ .|++||++++ ..+ .+. .|...|++++|+| ++++|++++.||.|++||+.+++.+..+ ..
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------~~ 303 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------PA 303 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--------EC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--------cC
Confidence 999999 9999999986 344 444 6889999999999 9999999999999999999998776532 24
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE---------------------------------eeeccC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA---------------------------------SAFRVA 565 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---------------------------------~~~~~~ 565 (755)
|...|++++|+|+++.+|++++.|+.|+||++......... ....+.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 66789999999944489999999999999998764321110 001156
Q ss_pred CceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 566 GSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 566 ~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..+.+++|+|+|++|++++.|+.|+||++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 67789999999999999999999999999865
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=325.29 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=204.7
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccccc-EEEEEEec--CCCEEEEEcCCCcEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSL--DGQYLASGGEDGTVR 309 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fsp--dg~~LaSgs~Dg~I~ 309 (755)
.|...+.+++|+|++++||+++ ++.|+||++...... ....+.+.+|.+. |.+++|+| ++++||+++.||.|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 3457788899999999999998 789999998754111 1234568899999 99999999 999999999999999
Q ss_pred EEEccCC--------eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc
Q 004410 310 VWKVIEH--------ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL 381 (755)
Q Consensus 310 vWdv~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (755)
|||+.++ .....+..+...+.++.|.++... ++...... ...+.+.+|+. .+.+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~-----------~~~~~v~~~d~------~~~~ 153 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGR-----------DNFGVFISWDS------GNSL 153 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCS-----------SCSEEEEETTT------CCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCC-----------CCccEEEEEEC------CCcc
Confidence 9999754 556666666666677777655432 11111110 01245666652 3467
Q ss_pred eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC---cEEEEEEeeCC-CCEEEEEeCCCcEE
Q 004410 382 HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNN---YVTSVAFNPVD-DNYFISGSIDGKVR 454 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~---~V~~i~fsp~d-~~~l~sgs~Dg~V~ 454 (755)
..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|+
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 7888999999999999998 79999999999999999999998886 888 899999999 7 99999999999999
Q ss_pred EEEcCCCeEEEec-----cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 455 IWEVRRCQVVDYT-----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 455 iwdl~~~~~~~~~-----~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
+||+.+++.+... .|...|.+++|+ ++++|++++.||.|++||+.+++....
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999888654 889999999999 999999999999999999998776543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=307.47 Aligned_cols=290 Identities=14% Similarity=0.197 Sum_probs=248.1
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
.....+.+|...+.+++|+|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++|+|++++|++++.|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 3334578889999999999999999999999999999976543 335678899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++||+.+++.+. .+.
T Consensus 96 g~i~iwd~~~~~~~~--------------------------------------------------------------~~~ 113 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVA--------------------------------------------------------------TWK 113 (369)
T ss_dssp TEEEEEETTTCCEEE--------------------------------------------------------------EEE
T ss_pred CeEEEEECCCCcEEE--------------------------------------------------------------Eee
Confidence 999999998775432 222
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeE-----------EEEE-ecCC--cEEEEEEeeCCCCEEE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC-----------LRVF-SHNN--YVTSVAFNPVDDNYFI 445 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~-----------~~~~-~h~~--~V~~i~fsp~d~~~l~ 445 (755)
|...|.+++|+|++ +|++++.+ +.|++||+..... +..+ .|.. .+.+++|+| ++++|+
T Consensus 114 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 191 (369)
T 3zwl_B 114 -SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYII 191 (369)
T ss_dssp -CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEE
T ss_pred -cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEE
Confidence 67789999999999 89999988 9999999875532 1222 3444 899999999 999999
Q ss_pred EEeCCCcEEEEEcCC-CeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 446 SGSIDGKVRIWEVRR-CQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~-~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
+++.||.|++||+++ .+.+ .+..|...|.+++|+|++++|++++.||.|++||+.+++...... +...+
T Consensus 192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~~ 262 (369)
T 3zwl_B 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------TDCPL 262 (369)
T ss_dssp EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCE
T ss_pred EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---------CCCCc
Confidence 999999999999998 5555 566788999999999999999999999999999999988765432 45789
Q ss_pred EEEEEcCCCCCEEEEEECCC--------------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 524 TGFQFSPSDPSKVIVTSADS--------------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg--------------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
..++|+| ++.++++++.++ .+++||..+....... ..|...|++++|+|++++|++++.||.|
T Consensus 263 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 263 NTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--QGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe--ecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999 899999999988 8999998876655554 6789999999999999999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
+||++.++.
T Consensus 340 ~iw~~~~~~ 348 (369)
T 3zwl_B 340 RLHHFEKSY 348 (369)
T ss_dssp EEEEECHHH
T ss_pred EEEECcccc
Confidence 999998764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=303.12 Aligned_cols=251 Identities=21% Similarity=0.323 Sum_probs=217.1
Q ss_pred cceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
...++.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------------------- 53 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------------------- 53 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-----------------------------------
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-----------------------------------
Confidence 345789999999999999965 89999999999999998532110
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVT 432 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~ 432 (755)
...++..+.+|...|.+++|++++ +|++++.|++|++||+.+++++..+. |...|.
T Consensus 54 ----------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~ 111 (319)
T 3frx_A 54 ----------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM 111 (319)
T ss_dssp ----------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ----------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE
Confidence 012356788999999999999999 99999999999999999999988884 999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccC------CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD------GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd------g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
+++|+| ++.+|++|+.|++|++||++...+..+..|...|.+++|.|. +..|++++.|+.|++||+++.+...
T Consensus 112 ~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 190 (319)
T 3frx_A 112 SVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190 (319)
T ss_dssp EEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe
Confidence 999999 999999999999999999998777788899999999999995 4589999999999999999887654
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
. ...|...|++++|+| ++.+|++++.|+.|+|||.......... .+...|.+++|+|++.+|++++.+
T Consensus 191 ~--------~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 191 D--------FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp E--------ECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE---ECCSCEEEEEECSSSSEEEEEETT
T ss_pred e--------ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCcEEEEEEcCCCCEEEEEcCC
Confidence 3 234678999999999 9999999999999999999886655543 345689999999999999988865
Q ss_pred CcEEEEEcCCC
Q 004410 587 SNIYIWNYSNQ 597 (755)
Q Consensus 587 g~I~iWd~~~~ 597 (755)
.|++|++..+
T Consensus 259 -~i~v~~~~~~ 268 (319)
T 3frx_A 259 -GIKVFSLDPQ 268 (319)
T ss_dssp -EEEEEEETTE
T ss_pred -CcEEEEeCcC
Confidence 5999998754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=305.44 Aligned_cols=256 Identities=20% Similarity=0.272 Sum_probs=211.2
Q ss_pred cceeeecccc-cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEG-SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~-~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+++.+|.+ .|++++|+|+|++||+|+.|++|+||++.++.....
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~--------------------------------- 53 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK--------------------------------- 53 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---------------------------------
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---------------------------------
Confidence 4467889988 999999999999999999999999999876542110
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCc
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNY 430 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~ 430 (755)
.....+|...|.+++|+|++ +|++++.|++|+|||+..+. ++..+ .|...
T Consensus 54 --------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~ 107 (345)
T 3fm0_A 54 --------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE 107 (345)
T ss_dssp --------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred --------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence 11135799999999999999 99999999999999998764 45555 49999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe---EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ---VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~---~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
|++++|+| ++++|++|+.|++|++||+.+.. ++ .+..|...|.+++|+|++++|++|+.|+.|++||+.++....
T Consensus 108 v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 108 VKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred ceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 99999999 99999999999999999998753 22 467788999999999999999999999999999998876432
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce-------------eeEEEeee-ccCCceEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV-------------GKFKASAF-RVAGSQMFAT 572 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-------------~~~~~~~~-~~~~~v~~l~ 572 (755)
.. ....|...|++++|+| ++.+|++++.|++|+||+..... ........ .|...|.+++
T Consensus 187 ~~------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 187 CA------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp EE------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred EE------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 11 1334678999999999 89999999999999999953210 01111112 3788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+|++.+|++++.|+.|++|++..+.
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 99999999999999999999987653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=317.53 Aligned_cols=311 Identities=11% Similarity=0.120 Sum_probs=248.2
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----C---C
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----G---Q 297 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g---~ 297 (755)
.+....+.+|.+.+.+++|+| ++|++|+.||.|+||++..... .........+.+|...|.+++|+|+ + +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-ccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 344556778889999999999 8999999999999999876542 1223345678899999999999999 9 9
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
+|++++.||.|++|++.+++...
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~--------------------------------------------------------- 105 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETK--------------------------------------------------------- 105 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTC---------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEccCCcccc---------------------------------------------------------
Confidence 99999999999999987654200
Q ss_pred CccceEecCC-----CCCEEEEEEc----CCC-e-EEEEeCCCcEEEEeCCC------CeEEE-----EE--------ec
Q 004410 378 EKPLHEFQGH-----SSEVLDLSWS----KNG-F-LLSSSADKTVRLWQVGI------DRCLR-----VF--------SH 427 (755)
Q Consensus 378 ~~~~~~~~gh-----~~~V~~l~~s----~~~-~-L~s~s~Dg~V~iWdl~s------~~~~~-----~~--------~h 427 (755)
...+..+.+| ...|.+++|+ |++ . |++++.|+.|++||+.+ ++.+. .+ .|
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCC
Confidence 0013345566 5899999999 888 7 99999999999999988 55544 44 27
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-ecc---C---CcceEEEEEccCCCeEEEEeCC---CcEEEE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTD---I---REIVSAVCYCPDGKGGIVGTMT---GNCRFY 497 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~---~---~~~V~~v~~spdg~~la~gs~d---g~I~iw 497 (755)
...|++++|+| ++ +|++++.||.|++||+++++.+. +.. | ...|.+++|+|++++|++++.| |.|++|
T Consensus 186 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 186 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 89999999999 88 99999999999999999988774 555 6 8899999999999999999999 999999
Q ss_pred ECCCCeEeeeeeEEecc-----cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee----cc----
Q 004410 498 DIKDNQLYQQNQICLQG-----KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF----RV---- 564 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~-----~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~---- 564 (755)
|+++++.+..+...... ....|...|++++|+| ++.+|++++.|+.|+|||..+.......... .|
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence 99988766543210000 0001668899999999 8899999999999999999887655554200 45
Q ss_pred -----------CCceEEEEEecCC----------CEEEEEeCCCcEEEEEcCCCC
Q 004410 565 -----------AGSQMFATFTSDG----------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 565 -----------~~~v~~l~fspdg----------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...|++++|+|+| ++|++++.||.|+||++.+++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8899999999999 799999999999999998763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=315.45 Aligned_cols=299 Identities=16% Similarity=0.153 Sum_probs=236.2
Q ss_pred ccccceeeeeccCcceeecCCC-CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEc
Q 004410 226 KKLGAMARIIDRHGSATLKPGD-HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGG 303 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg-~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs 303 (755)
+....+.+|...+.+++|+|++ ++|++|+.||.|+||++....... ...+.+|.+.|.+++|+| ++++|++++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 3445667788889999999999 899999999999999987544221 112347999999999999 789999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+.|++||+.+.. +..+ ..
T Consensus 139 ~d~~i~iwd~~~~~-~~~~-----------------------------------------------------------~~ 158 (383)
T 3ei3_B 139 IRGATTLRDFSGSV-IQVF-----------------------------------------------------------AK 158 (383)
T ss_dssp TTTEEEEEETTSCE-EEEE-----------------------------------------------------------EC
T ss_pred CCCEEEEEECCCCc-eEEE-----------------------------------------------------------ec
Confidence 99999999987432 1111 11
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~ 460 (755)
..+|...|.+++|+|++ +|++++.|+.|++||+. ++++..+ .|...|.+++|+| ++. +|++++.|+.|++||+++
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence 23466889999999999 99999999999999995 5566665 5999999999999 777 999999999999999998
Q ss_pred ----CeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC----------CCCeEE
Q 004410 461 ----CQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP----------GKRITG 525 (755)
Q Consensus 461 ----~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~----------~~~I~~ 525 (755)
+.++....|...|++++|+| ++++|++++.||.|++||++++............ ...+ ...+..
T Consensus 237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~ 315 (383)
T 3ei3_B 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR-QFQHLTPIKATWHPMYDLIV 315 (383)
T ss_dssp CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC-CCTTSCCCCCEECSSSSEEE
T ss_pred CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc-ccccccceEEeccCCCCceE
Confidence 66776668999999999999 9999999999999999999987765443321110 0111 234445
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++|+| ++.+ +++.|+.|+|||..+...........+...+..++|+|+|++|++|+ |+.|+|||+++
T Consensus 316 ~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 66666 4444 67789999999998766655543233567788889999999999997 99999999975
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=310.30 Aligned_cols=244 Identities=16% Similarity=0.205 Sum_probs=207.8
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+...+.+++|+|++ .|++|+.||+|+|||+.++..... ....+.+|.+.|++|+|+|+|++||+|+.|++|+|||+
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~---~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV---SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE---eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999985 678999999999999876543211 12345689999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++. +..+.+|...|.+
T Consensus 157 ~~~~~--------------------------------------------------------------~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 157 AQQVV--------------------------------------------------------------LSSYRAHAAQVTC 174 (344)
T ss_dssp TTTEE--------------------------------------------------------------EEEECCCSSCEEE
T ss_pred CCCcE--------------------------------------------------------------EEEEcCcCCceEE
Confidence 87753 3456789999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eec
Q 004410 394 LSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYT 467 (755)
Q Consensus 394 l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~ 467 (755)
++|++++ .|++++.|++|++||+++++++..+. +...+++++|+|.++++|++|+.||+|+|||+++++++ .+.
T Consensus 175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~ 254 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254 (344)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence 9999987 78999999999999999999888774 66789999999977789999999999999999988766 677
Q ss_pred cCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 468 DIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 468 ~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
.|...|++++|+|++ ++|++|+.||+|+|||+.++++.. ...|...|++++|+|++..+|++++.|++|+
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------ECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 899999999999998 578999999999999999987643 2347789999999996667888999999999
Q ss_pred EEECCc
Q 004410 547 VLCGEN 552 (755)
Q Consensus 547 iwd~~~ 552 (755)
+|++.+
T Consensus 326 ~w~v~~ 331 (344)
T 4gqb_B 326 HHVVPT 331 (344)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=345.71 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=163.6
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.....+|.+.+.+++|+|++++||+|+.||+|+||+....... ....|...|.+|+|+| |++|++++.|++
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~ 80 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--------IKLEDRSAIKEMRFVK-GIYLVVINAKDT 80 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--------EECSSCCCEEEEEEET-TTEEEEEETTCE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--------EEcCCCCCEEEEEEcC-CCEEEEEECcCe
Confidence 3344577888999999999999999999999999997543211 1234788999999999 889999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccc------
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPL------ 381 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 381 (755)
|+|||+.+++.+..+. +...+.++.|.++. ...+.++.++.+.+|+.....+....+
T Consensus 81 v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g----------------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVF-VPGKITSIDTDASL----------------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp EEEEETTTCSEEEEEE-CSSCEEEEECCTTC----------------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred EEEEECCCCcEEEEEc-CCCCEEEEEECCCC----------------CEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 9999999998877765 22334444444332 123455667777777765433211000
Q ss_pred -eEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-c------------------CCcEEEEEEeeC
Q 004410 382 -HEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-H------------------NNYVTSVAFNPV 439 (755)
Q Consensus 382 -~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h------------------~~~V~~i~fsp~ 439 (755)
..+.+|.+.|.+++|+|++ .|++++.|++| +||+++++++..+. | ...|++++|+|
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp- 221 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP- 221 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence 3357899999999999974 89999999999 99999999988885 3 37799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
++++|++|+.||+|++||+++++++.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEE
Confidence 89999999999999999998877654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=303.04 Aligned_cols=250 Identities=18% Similarity=0.331 Sum_probs=215.4
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~------------------------------------- 89 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK------------------------------------- 89 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------------------------------
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------------------------------
Confidence 3456889999999999999999999999999999999877653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe----EEEEE-ecCC
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR----CLRVF-SHNN 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~----~~~~~-~h~~ 429 (755)
+..+..|...|.+++|+|++ +|++++.|+.|++||+.+.. ....+ .|..
T Consensus 90 -------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 90 -------------------------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp -------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred -------------------------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 23455688899999999999 99999999999999998753 34444 5999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
.|.++.|++ ++ .+++++.|++|++||+.+++.+ .+..|...|.+++|+|++++|++|+.||.|++||++++.....
T Consensus 145 ~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~- 221 (340)
T 1got_B 145 YLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221 (340)
T ss_dssp CEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE-
T ss_pred cEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE-
Confidence 999999998 54 5899999999999999998877 5677999999999999999999999999999999998876543
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
...|...|++++|+| ++.+|++++.|+.|++||..............+...|++++|+|+|++|++|+.||.
T Consensus 222 -------~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 222 -------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred -------EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 234678899999999 899999999999999999987655444322234457999999999999999999999
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|++||+.+++
T Consensus 294 i~vwd~~~~~ 303 (340)
T 1got_B 294 CNVWDALKAD 303 (340)
T ss_dssp EEEEETTTCC
T ss_pred EEEEEcccCc
Confidence 9999998765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=310.78 Aligned_cols=296 Identities=13% Similarity=0.203 Sum_probs=240.3
Q ss_pred eeeeeccCcceeecCCCCe-eEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecC---CCEEEEEc
Q 004410 231 MARIIDRHGSATLKPGDHE-LTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGG 303 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~-lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd---g~~LaSgs 303 (755)
..+|.+.+.+++|+|++.. +++|+. |+.|+||++....... ....+|...|.+++|+|+ +++|++|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 4567888999999999964 556665 9999999987544211 123479999999999998 79999999
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.||.|++||+.+++ .++..
T Consensus 88 ~dg~i~iwd~~~~~-------------------------------------------------------------~~~~~ 106 (357)
T 3i2n_A 88 FGGNLHIWNLEAPE-------------------------------------------------------------MPVYS 106 (357)
T ss_dssp TTSCEEEECTTSCS-------------------------------------------------------------SCSEE
T ss_pred CCCeEEEEeCCCCC-------------------------------------------------------------ccEEE
Confidence 99999999987653 12455
Q ss_pred ecCCCCCEEEEEE------cCCC-eEEEEeCCCcEEEEeCCCCe-EEEEEe-c----CCcEEEEE----EeeCCCCEEEE
Q 004410 384 FQGHSSEVLDLSW------SKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS-H----NNYVTSVA----FNPVDDNYFIS 446 (755)
Q Consensus 384 ~~gh~~~V~~l~~------s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~~-h----~~~V~~i~----fsp~d~~~l~s 446 (755)
+.+|...|.++.| ++++ +|++++.|+.|++||+.+++ .+..+. | ...|.+++ |+| ++++|++
T Consensus 107 ~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~ 185 (357)
T 3i2n_A 107 VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCA 185 (357)
T ss_dssp ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEE
T ss_pred EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEE
Confidence 6789999999965 6777 99999999999999999887 666663 3 34899998 677 9999999
Q ss_pred EeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
++.||.|++||+++++......+...|.+++|+| ++.+|++++.||.|++||+++++........ ....|...|
T Consensus 186 ~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v 262 (357)
T 3i2n_A 186 GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTV 262 (357)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCE
T ss_pred EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCE
Confidence 9999999999999999988888999999999999 9999999999999999999877654433211 123577899
Q ss_pred EEEEEcCCCCC-EEEEEECCCcEEEEECCccee-----------------eEEEeeeccCCceEEEEEecCCCEEE-EEe
Q 004410 524 TGFQFSPSDPS-KVIVTSADSLVRVLCGENVVG-----------------KFKASAFRVAGSQMFATFTSDGKHVV-SPS 584 (755)
Q Consensus 524 ~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~~~~-----------------~~~~~~~~~~~~v~~l~fspdg~~L~-sgs 584 (755)
++++|+| ++. ++++++.|+.|++||...... ........|...|++++|+|+|++|+ +++
T Consensus 263 ~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 263 WQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 9999999 666 899999999999999874321 22333467899999999999999998 899
Q ss_pred CCCcEEEEEcCCCC
Q 004410 585 EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~ 598 (755)
.||.|+|||+.+.+
T Consensus 342 ~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 342 FDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSEEEEEEECC--
T ss_pred CCCcEEEEECCCcc
Confidence 99999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=309.32 Aligned_cols=291 Identities=12% Similarity=0.172 Sum_probs=240.8
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.|.+.+.+++|+|++++|++|+.++.|+||+..... +...+.+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 366789999999999999999999999999976542 113456789999999999999999999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+++... ...+..|...|.
T Consensus 81 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~v~ 100 (372)
T 1k8k_C 81 LKGRTWKP------------------------------------------------------------TLVILRINRAAR 100 (372)
T ss_dssp EETTEEEE------------------------------------------------------------EEECCCCSSCEE
T ss_pred CCCCeeee------------------------------------------------------------eEEeecCCCcee
Confidence 97765321 122356888999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeE---EEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-------
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR------- 459 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~---~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~------- 459 (755)
+++|+|++ +|++++.|+.|++||+..+.. ...+ .|...|++++|+| ++++|++++.||.|++||++
T Consensus 101 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccc
Confidence 99999999 999999999999999988762 3333 3789999999999 99999999999999999954
Q ss_pred -----------CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 460 -----------RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 -----------~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
.++.+ .+..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..+...|++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~ 251 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVT 251 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEE
T ss_pred ccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEE
Confidence 45555 56678899999999999999999999999999999988766542 23567899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCc--ceeeE------------------------------E------Eee-eccCCce
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGEN--VVGKF------------------------------K------ASA-FRVAGSQ 568 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~--~~~~~------------------------------~------~~~-~~~~~~v 568 (755)
|+| ++.+++++ .|+.|++|+... ..... . ... .+|...|
T Consensus 252 ~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 252 FIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred Eec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 999 77777776 999999999876 21000 0 111 3789999
Q ss_pred EEEEEe-cCC---CEEEEEeCCCcEEEEEcCCCCc
Q 004410 569 MFATFT-SDG---KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 569 ~~l~fs-pdg---~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++++|. ++| .+|++|+.||.|++|++.+++.
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 999966 677 9999999999999999987663
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=301.04 Aligned_cols=254 Identities=23% Similarity=0.316 Sum_probs=209.5
Q ss_pred cceeeecccccEEEEEE-----ec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 276 TGQEFLAHEGSILTMKF-----SL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~f-----sp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
..+.+.+|.+.|++++| ++ |+++||||+.|++|+|||+.+.+....
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---------------------------- 64 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---------------------------- 64 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----------------------------
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----------------------------
Confidence 34578999999999999 77 999999999999999999865431100
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-H 427 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h 427 (755)
...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |
T Consensus 65 ---------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 65 ---------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp ---------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred ---------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 012345678999999999999999 99999999999999999999988884 9
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---cCCcceEEEEEccCC----------CeEEEEeCCCcE
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDG----------KGGIVGTMTGNC 494 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~spdg----------~~la~gs~dg~I 494 (755)
...|.+++|+| ++++|++++.|++|++||+......... .|...|.+++|+|++ .+|++++.||.|
T Consensus 118 ~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 99999999999 9999999999999999999865554433 678889999999987 789999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
++||.. ...... ...|...|++++|+| ++.+|++++.|+.|++||.......... ..+...|.+++|+
T Consensus 197 ~iwd~~-~~~~~~--------~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~v~~s 264 (343)
T 2xzm_R 197 KVWNTN-FQIRYT--------FKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQRE--FDAGSTINQIAFN 264 (343)
T ss_dssp EEEETT-TEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEE--EECSSCEEEEEEC
T ss_pred EEEcCC-CceeEE--------EcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCccccee--ecCCCcEEEEEEC
Confidence 999954 333221 234678999999999 8999999999999999998543322222 3355679999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++++|+++ .|+.|++|++.+++
T Consensus 265 p~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 265 PKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CCCCEEEEE-CCCCEEEEEeCCCC
Confidence 999887655 57889999998765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=295.48 Aligned_cols=289 Identities=19% Similarity=0.250 Sum_probs=241.9
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+....+.+|.+.+.+++| |++.+|++|+.||.|+||+..... ....+..|.+.|.+++|+|++++|++++.|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence 345567888899999999 999999999999999999975432 334577899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++|++..... .+++..+.
T Consensus 81 g~i~~~~~~~~~~-----------------------------------------------------------~~~~~~~~ 101 (313)
T 3odt_A 81 TMINGVPLFATSG-----------------------------------------------------------EDPLYTLI 101 (313)
T ss_dssp SCEEEEETTCCTT-----------------------------------------------------------SCC-CEEC
T ss_pred CeEEEEEeeecCC-----------------------------------------------------------CCcccchh
Confidence 9999999865421 12345667
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+|...|.+++|. .+.|++++.|+.|++|| .++.+..+ .|...|.+++|.|.++++|++++.||.|++||.......
T Consensus 102 ~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 178 (313)
T 3odt_A 102 GHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT 178 (313)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE
T ss_pred hcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE
Confidence 899999999993 33999999999999999 66666666 499999999999878999999999999999994433332
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
....+...+.+++|+|++. +++++.+|.|++||+++++.+..+ ..|...|++++|+| ++ .+++++.|+.
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~~~-~~-~l~~~~~dg~ 247 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY--------EGHESFVYCIKLLP-NG-DIVSCGEDRT 247 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECT-TS-CEEEEETTSE
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh--------hcCCceEEEEEEec-CC-CEEEEecCCE
Confidence 3333889999999999998 999999999999999998776542 24678899999999 55 5999999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++||..+....... ..|...|.+++|+|+++ +++++.||.|++||+.+++
T Consensus 248 v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 248 VRIWSKENGSLKQVI--TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EEEECTTTCCEEEEE--ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred EEEEECCCCceeEEE--eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999887655554 56788999999999998 6679999999999998876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=305.62 Aligned_cols=270 Identities=21% Similarity=0.356 Sum_probs=215.1
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|.+.|.+++|+|||++||+|+ ++.++||++.+++.+..+..+.....
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~------------------------------ 109 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK------------------------------ 109 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc------------------------------
Confidence 36999999999999999999987 78999999998877655432211000
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp 438 (755)
.+. .........+...|.+++|+|++ +|++++.|++|+|||+.+++++..+. |...|++++|+|
T Consensus 110 ---------~~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p 175 (393)
T 1erj_A 110 ---------DPE-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175 (393)
T ss_dssp -------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred ---------ccc-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC
Confidence 000 00001112345569999999999 99999999999999999999988885 999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
++++|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.||.|++||++++..+....... ....
T Consensus 176 -~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~ 253 (393)
T 1erj_A 176 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-ESGT 253 (393)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------C
T ss_pred -CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-cCCC
Confidence 99999999999999999999999887667788899999999 89999999999999999999987765432111 1123
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------eEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG----------KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~----------~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.|...|++++|+| ++.+|++++.|+.|++||+..... .......+|...|.+++|+|++++|++|+.|+
T Consensus 254 ~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 254 GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 5778999999999 899999999999999999875321 12223367889999999999999999999999
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|++||+.+++
T Consensus 333 ~v~iwd~~~~~ 343 (393)
T 1erj_A 333 GVLFWDKKSGN 343 (393)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCe
Confidence 99999998765
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=326.74 Aligned_cols=300 Identities=17% Similarity=0.189 Sum_probs=224.4
Q ss_pred cceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCC
Q 004410 229 GAMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDG 306 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg 306 (755)
.....|..+|.+++|+|. +++||+|+.||.|+||++...... ....+.+|.+.|++|+|+| ++++|+||+.||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 345566778999999995 569999999999999998754321 1234678999999999998 789999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|+|||+.++... .+ .....
T Consensus 188 ~v~iwd~~~~~~~-~~-----------------------------------------------------------~~~~~ 207 (435)
T 4e54_B 188 TTRLQDFKGNILR-VF-----------------------------------------------------------ASSDT 207 (435)
T ss_dssp CEEEEETTSCEEE-EE-----------------------------------------------------------ECCSS
T ss_pred EEEEeeccCCcee-EE-----------------------------------------------------------eccCC
Confidence 9999998654321 00 01123
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV- 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~- 464 (755)
+...+.+++|++++ +|++|+.||.|++||++.........|...|++++|+|....+|++|+.|+.|+|||+++.+..
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 44567889999999 9999999999999999765443333599999999999954568999999999999999876432
Q ss_pred ---EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-
Q 004410 465 ---DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS- 540 (755)
Q Consensus 465 ---~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s- 540 (755)
....|...|++++|+|+|++|++++.||.|+|||+.++........... .......+....|+| ++..++++.
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 364 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH--RHFQHLTPIKAAWHP-RYNLIVVGRY 364 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC--CCCSSSCCCBCEECS-SSSCEEEECC
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc--cccccceeEEEEEcC-CCCEEEEEEc
Confidence 3457888999999999999999999999999999998876543221110 001111233456666 444555443
Q ss_pred -----------CCCcEEEEECCcceeeEEEeeeccCCceEEE-EEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 541 -----------ADSLVRVLCGENVVGKFKASAFRVAGSQMFA-TFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 541 -----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l-~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.++.|++||..+....... ...|...|.++ +|+|+|++|++|+ |+.|+|||+.+++
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQL-YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEE-CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEE-eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 3467999999876554443 14577788887 6999999999876 7899999999886
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=313.12 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=230.8
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+....++|+|++++|++|+.|+.|++|+....... +.+..| ..+....|+|++++||+|+.||.|+|||+.+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-------eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 33556999999999999999999999998754321 223445 4455667899999999999999999999876
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++. ...+.+|...|.+++
T Consensus 129 ~~~--------------------------------------------------------------~~~~~~h~~~v~~~~ 146 (420)
T 3vl1_A 129 NLQ--------------------------------------------------------------REIDQAHVSEITKLK 146 (420)
T ss_dssp CEE--------------------------------------------------------------EEETTSSSSCEEEEE
T ss_pred cce--------------------------------------------------------------eeecccccCccEEEE
Confidence 543 233457999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec----cC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT----DI 469 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~----~~ 469 (755)
|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|+.|++||+++++.+... .+
T Consensus 147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 225 (420)
T 3vl1_A 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP 225 (420)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence 99999 99999999999999999999888885 999999999999 9999999999999999999998877433 23
Q ss_pred CcceEE---------------------EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 470 REIVSA---------------------VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 470 ~~~V~~---------------------v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
...+.+ ++|+|++++|++|+.||.|++||+++++..... ...+...|++++|
T Consensus 226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTV 298 (420)
T ss_dssp TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEE
T ss_pred CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-------ccccCCCceeEEE
Confidence 334444 455789999999999999999999988765432 2245678999999
Q ss_pred cCCCCC-EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 529 SPSDPS-KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 529 sp~d~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+| ++. +|++++.|+.|++||..+...........|...+.++.+ +++++|++++.|+.|++|++..+.
T Consensus 299 ~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 299 DG-NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp CS-SCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred eC-CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 99 555 999999999999999987644232222346677887755 588999999999999999998854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=295.77 Aligned_cols=253 Identities=19% Similarity=0.282 Sum_probs=207.5
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|.+.|++++|+|+|++||+|+.|++|+||++....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------------------- 42 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------------------- 42 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------------------------
Confidence 467899999999999999999999999999999985431
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVT 432 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~ 432 (755)
.+.+.++.+|.+.|.+++|+++ + +|++++.|++|+|||+.+++ .+..+ .|...|.
T Consensus 43 -------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 43 -------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp -------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred -------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 1225667899999999999863 5 99999999999999998874 44444 4899999
Q ss_pred EEEEeeCC--CCEEEEEeCCCcEEEEEcCCCe---EEEeccCCcceEEEEEccC-------------CCeEEEEeCCCcE
Q 004410 433 SVAFNPVD--DNYFISGSIDGKVRIWEVRRCQ---VVDYTDIREIVSAVCYCPD-------------GKGGIVGTMTGNC 494 (755)
Q Consensus 433 ~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~---~~~~~~~~~~V~~v~~spd-------------g~~la~gs~dg~I 494 (755)
+++|+| + +.+|++++.|++|++||+++.. ...+..|...|.+++|+|+ +++|++|+.|++|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998753 3456788899999999997 5799999999999
Q ss_pred EEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeE--EE-eeeccCCceE
Q 004410 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKF--KA-SAFRVAGSQM 569 (755)
Q Consensus 495 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~--~~-~~~~~~~~v~ 569 (755)
++||++++........ ....|...|.+++|+|+. +.+|++++.|++|+|||........ .. ....|...|.
T Consensus 183 ~lwd~~~~~~~~~~~~----~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEEEEE----EecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 9999987652211111 133477899999999943 5899999999999999987642211 11 1135678899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=307.15 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=235.3
Q ss_pred eeeeeccCcceeecCC----CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC----CCEEEEE
Q 004410 231 MARIIDRHGSATLKPG----DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD----GQYLASG 302 (755)
Q Consensus 231 ~~~~~~~~~~~~~spd----g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd----g~~LaSg 302 (755)
..+|...+.+++|+|+ ...+++++.++.|+||+...... +..+. ......|.+.|.+++|+|+ +++|++|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-IRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-EEEEE-EEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-EEeee-eccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3467788999999994 45677777778999999875432 11110 0111237788999999999 6799999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|+|||+.+++. +.
T Consensus 92 ~~dg~i~v~d~~~~~~--------------------------------------------------------------~~ 109 (366)
T 3k26_A 92 GSRGIIRIINPITMQC--------------------------------------------------------------IK 109 (366)
T ss_dssp ETTCEEEEECTTTCCE--------------------------------------------------------------EE
T ss_pred cCCCEEEEEEchhceE--------------------------------------------------------------ee
Confidence 9999999999877643 33
Q ss_pred EecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 383 EFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
.+.+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+ .|...|.+++|+| ++++|++++.||.|++|
T Consensus 110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 188 (366)
T 3k26_A 110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLW 188 (366)
T ss_dssp EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEE
Confidence 4567999999999999 77 9999999999999999999999988 4999999999999 99999999999999999
Q ss_pred EcCCCeEEE-----------------------------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 457 EVRRCQVVD-----------------------------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 457 dl~~~~~~~-----------------------------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
|+++++... ...|...|.+++|+ +++|++++.||.|++||+.+......
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~ 266 (366)
T 3k26_A 189 RINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDID 266 (366)
T ss_dssp ESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGG
T ss_pred ECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccc
Confidence 998765431 22288899999998 78999999999999999987643110
Q ss_pred e------eEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceee--EEEeeecc--CCceEEEEEec
Q 004410 508 N------QICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGK--FKASAFRV--AGSQMFATFTS 575 (755)
Q Consensus 508 ~------~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~~~--~~~v~~l~fsp 575 (755)
. ..........+...|++++|+| + +.+|++++.||.|++||....... .......| ...|++++|+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 267 KIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp GCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred ccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 0 0011112334667899999999 7 899999999999999998874321 21122344 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++++|++++.||.|+|||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999853
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=293.12 Aligned_cols=286 Identities=16% Similarity=0.230 Sum_probs=239.1
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...+.+++|+|||++++++..++.+.+|........ ....+|.+.|.+++|+|++++|++++ ||.|++|++.
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-------INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-------EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-------ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 456888999999999999888777766654332211 22347999999999999999999999 9999999997
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.....+. .....+|...|.++
T Consensus 81 ~~~~~~~~~---------------------------------------------------------~~~~~~~~~~v~~~ 103 (337)
T 1gxr_A 81 HPGNKSPVS---------------------------------------------------------QLDCLNRDNYIRSC 103 (337)
T ss_dssp STTCCSCSE---------------------------------------------------------EEECSCTTSBEEEE
T ss_pred CCCceeeee---------------------------------------------------------cccccCCCCcEEEE
Confidence 764211100 11123688999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccC
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~ 469 (755)
+|+|++ +|++++.|+.|++||+.+++ ....+ .|...|++++|+| ++++|++++.||.|++||+++++.+ .+..|
T Consensus 104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 999999 89999999999999999887 34444 4889999999999 9999999999999999999998877 56678
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...|.+++|+|++++|++++.||.|++||+++++..... .+...+.+++|+| ++.++++++.++.|++||
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---------cCCCceEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 899999999999999999999999999999998876532 1456799999999 899999999999999999
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
....... . ...|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 253 ~~~~~~~-~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 253 VNKPDKY-Q--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp TTSSCEE-E--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCeE-E--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 9875432 2 267889999999999999999999999999999998863
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=305.87 Aligned_cols=314 Identities=13% Similarity=0.014 Sum_probs=224.8
Q ss_pred cCcceeecCCCCeeEEeeCC-------CeEEEEECCCCccccc-cccc--ceeeecccccEEEEEEecCCCEEEEEc---
Q 004410 237 RHGSATLKPGDHELTLGQRM-------RRVRVHPVKKQSRELS-SLYT--GQEFLAHEGSILTMKFSLDGQYLASGG--- 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~d-------g~V~Vw~~~~~~~~~~-~~~~--~~~l~~H~~~V~~l~fspdg~~LaSgs--- 303 (755)
+|.+++|+||+++|++|+.+ +.|+||++........ .+.. ...+.+|...|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 57889999999999998753 3699999865432211 1111 12467888899888764 56777764
Q ss_pred --------CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCccee
Q 004410 304 --------EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR 375 (755)
Q Consensus 304 --------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (755)
.|+.+++|++.......... .
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~-----------------------------------~---------------- 122 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFL-----------------------------------T---------------- 122 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEE-----------------------------------E----------------
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEe-----------------------------------e----------------
Confidence 46677777765432110000 0
Q ss_pred ccCccceEecCCCCCEEEEEEcCCC-eEEE--EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCc
Q 004410 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLS--SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452 (755)
Q Consensus 376 ~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s--~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~ 452 (755)
.........+...+..++|+||| +|++ ++.|++|+|||+.+++++..+.|...|++++|+| ++++|++++.+ .
T Consensus 123 --~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~ 198 (365)
T 4h5i_A 123 --SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-S 198 (365)
T ss_dssp --EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-C
T ss_pred --eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-e
Confidence 00011123456678999999999 6654 4579999999999999999999999999999999 99999999855 5
Q ss_pred EEEEEcCCCeEE---EeccCCcceEEEEEccCCCeEEEEeCCC----cEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 453 VRIWEVRRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTMTG----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 453 V~iwdl~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~dg----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
+++|+..+++.+ ....|...|.+++|+|+++.+++++.++ .+++|++............ ...+...|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~V~~ 274 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ----VTNRFKGITS 274 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE----EESSCSCEEE
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee----ecCCCCCeEe
Confidence 666666665544 2445778899999999999999999887 5888998876643322211 2346678999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-cccCCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD-KSSSRS 604 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~-~~~~~~ 604 (755)
++|+| ++++|++|+.|+.|+|||..+....... ..+|...|++++|+|||++||+||.|++|+||++.... ......
T Consensus 275 ~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~ 352 (365)
T 4h5i_A 275 MDVDM-KGELAVLASNDNSIALVKLKDLSMSKIF-KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMK 352 (365)
T ss_dssp EEECT-TSCEEEEEETTSCEEEEETTTTEEEEEE-TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-----
T ss_pred EEECC-CCCceEEEcCCCEEEEEECCCCcEEEEe-cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCcc
Confidence 99999 9999999999999999999886554432 25799999999999999999999999999999997654 233334
Q ss_pred ccccceeee
Q 004410 605 KSIWSCESF 613 (755)
Q Consensus 605 ~~~~~~~~f 613 (755)
+.++..++.
T Consensus 353 ~~l~kl~~~ 361 (365)
T 4h5i_A 353 QKISKLEHH 361 (365)
T ss_dssp ---------
T ss_pred ccceeeecc
Confidence 444444443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=297.18 Aligned_cols=250 Identities=17% Similarity=0.292 Sum_probs=213.9
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+++.+|.+.|++++|+|++++||||+.||+|+|||..+++..
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~------------------------------------- 99 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE------------------------------------- 99 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------------------------------
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc-------------------------------------
Confidence 4568899999999999999999999999999999998766432
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC------eEEEE-EecC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID------RCLRV-FSHN 428 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~------~~~~~-~~h~ 428 (755)
..+..|...|.+++|+|++ .|++++.|+.|++|++... ..... ..|.
T Consensus 100 -------------------------~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 100 -------------------------HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp -------------------------EEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred -------------------------eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 3344577889999999999 9999999999999998643 12223 3599
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
..|.+++|+| ++..|++++.|++|++||+.+++.+ .+..|...|.+++|+| +|++|++|+.||.|++||+++++.+
T Consensus 155 ~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 155 NYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233 (354)
T ss_dssp SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999999999 8999999999999999999998877 5778899999999988 5789999999999999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.. ...|...|++++|+| ++.+|++++.|++|++||+.............+...+.+++|+|+|++|++|+.
T Consensus 234 ~~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 234 QA--------FETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EE--------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EE--------ecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 43 234678999999999 889999999999999999987654443322234457899999999999999999
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|+|||+.+++
T Consensus 305 d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYTINVWDVLKGS 317 (354)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCcEEEEECCCCc
Confidence 9999999998776
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=312.97 Aligned_cols=290 Identities=11% Similarity=0.113 Sum_probs=221.6
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
+...+.+++|+|++++||+|+.|+.|+||++..... ...+.+.+|.+.|.+++|+|++++|++++.|+.|+|||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 346789999999999999999999999999765421 233457889999999999999999999999999999999
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.+++.. .+...+.+|...|.+
T Consensus 85 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~ 105 (377)
T 3dwl_C 85 RPDGTW-----------------------------------------------------------KQTLVLLRLNRAATF 105 (377)
T ss_dssp ----CC-----------------------------------------------------------CCEEECCCCSSCEEE
T ss_pred CCCCce-----------------------------------------------------------eeeeEecccCCceEE
Confidence 765410 123445679999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeE---EEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC--------
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRC---LRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-------- 459 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-------- 459 (755)
++|+|++ +|++++.|+.|++||+.+++. ...+. |...|++++|+| ++++|++++.|+.|++||+.
T Consensus 106 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 106 VRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp EECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred EEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 9999999 999999999999999998873 55553 899999999999 99999999999999999985
Q ss_pred ----------CCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 460 ----------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 460 ----------~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
.++++....|...|++++|+|++++|++++.||.|++||+.++..... .......|...|++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s 260 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWA 260 (377)
T ss_dssp CSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEE
T ss_pred cccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEc
Confidence 244443338889999999999999999999999999999998875211 011234467789999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcce--------------------------------------eeEEE------------
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVV--------------------------------------GKFKA------------ 559 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~--------------------------------------~~~~~------------ 559 (755)
| ++.+|++++.++.+ +|+..... ..+..
T Consensus 261 ~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 338 (377)
T 3dwl_C 261 N-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISS 338 (377)
T ss_dssp E-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CC
T ss_pred C-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 9 88888888766555 66654211 00100
Q ss_pred eeeccCCceEEEEEecCC-C---EEEEEeCCCcEEEEEc
Q 004410 560 SAFRVAGSQMFATFTSDG-K---HVVSPSEDSNIYIWNY 594 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg-~---~L~sgs~Dg~I~iWd~ 594 (755)
....|...|+++++.+.. . .|+||+.||.|+|||+
T Consensus 339 ~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 339 LPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 001288899999976543 3 6999999999999986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=300.94 Aligned_cols=286 Identities=21% Similarity=0.321 Sum_probs=234.2
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
++.+.+....+++++..+++++.|+.|+||+...+... +.+. .|.+.|.+++|+|++++|++|+.||.|+||
T Consensus 89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 45555555455555677889999999999998765421 2222 389999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
|+.+++. +..+.+|...|
T Consensus 162 d~~~~~~--------------------------------------------------------------~~~~~~~~~~v 179 (401)
T 4aez_A 162 DVESQTK--------------------------------------------------------------LRTMAGHQARV 179 (401)
T ss_dssp ETTTCCE--------------------------------------------------------------EEEECCCSSCE
T ss_pred ECcCCeE--------------------------------------------------------------EEEecCCCCce
Confidence 9977643 34456799999
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCC-CCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Eecc
Q 004410 392 LDLSWSKNGFLLSSSADKTVRLWQVG-IDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTD 468 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~Dg~V~iWdl~-s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~ 468 (755)
.+++|++ ..|++++.|+.|++||++ ....+..+ .|...|.+++|+| ++++|++|+.|+.|++||+++++.+ .+..
T Consensus 180 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 257 (401)
T 4aez_A 180 GCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN 257 (401)
T ss_dssp EEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred EEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence 9999943 399999999999999998 45556665 5999999999999 9999999999999999999988776 5667
Q ss_pred CCcceEEEEEccCCCeE-EEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCC
Q 004410 469 IREIVSAVCYCPDGKGG-IVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADS 543 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~l-a~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg 543 (755)
|...|.+++|+|++..+ ++|+ .||.|++||+.+++...... +...|++++|+| ++.++++++ .|+
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---------~~~~v~~~~~s~-~~~~l~~~~g~~dg 327 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---------AGSQVTSLIWSP-HSKEIMSTHGFPDN 327 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---------CSSCEEEEEECS-SSSEEEEEECTTTC
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---------CCCcEEEEEECC-CCCeEEEEeecCCC
Confidence 89999999999977554 5544 69999999999988765432 346899999999 888888854 899
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.|++|+..+...........|...|.+++|+|+|++|++++.||.|++|++.+++.
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 99999998855554444477999999999999999999999999999999998873
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=348.61 Aligned_cols=349 Identities=17% Similarity=0.236 Sum_probs=275.1
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~D 305 (755)
+..+.+|...+.+++|+|++++||+|+.|+.|+||+..++. ..+.+.+|.+.|.+++|+| ++.+|++|+.|
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d 722 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETT
T ss_pred EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCC
Confidence 34566778888999999999999999999999999987543 3456789999999999999 55699999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCC--------ceeEEeecCcceeee----------------------
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS--------QLIPIDVDKEKIDKT---------------------- 355 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~---------------------- 355 (755)
+.|++||+.+++....+..+...+.++.|.++... .+..++.........
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 99999999999998888888877777777765431 122222211110000
Q ss_pred ---------------------------------------------------eeeeecCCceEEEeCCcceeccCccceEe
Q 004410 356 ---------------------------------------------------KSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 356 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
..+.++.++.+.+|+... ...+..+
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~----~~~~~~~ 878 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS----RLKVADC 878 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT----TEEEEEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC----Cceeeec
Confidence 011112222233332221 3445677
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------------------------------------------
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--------------------------------------------- 418 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s--------------------------------------------- 418 (755)
.+|...|.+++|+|++ .|++++.|++|++||+.+
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 8999999999999998 899999999999998431
Q ss_pred ----------------------------------CeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 419 ----------------------------------DRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 419 ----------------------------------~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
++.+..+ .|...|++++|+| ++++|++++.||.|++||+.+++.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCce
Confidence 1222222 3788899999999 999999999999999999999999
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....|...|.+++|+|++ .+++++.||.|++||+.+++.... ...|...|++++|+| ++.++++++.|+
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~-d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERD--------FTCHQGTVLSCAISS-DATKFSSTSADK 1107 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEE--------EECCSSCCCCEEECS-SSSSCEEECCSS
T ss_pred EEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEE--------EcccCCcEEEEEECC-CCCEEEEEcCCC
Confidence 9888999999999999976 578889999999999999886643 234677899999999 899999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.|++||..+....... ..|...|++++|+|+|++|++++.||.|++||+.+++..
T Consensus 1108 ~v~iwd~~~~~~~~~l--~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHEL--KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CCCEECSSSSSCSBCC--CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred cEEEEECCCcceeeee--ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 9999998876544433 578899999999999999999999999999999988743
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=286.98 Aligned_cols=250 Identities=28% Similarity=0.535 Sum_probs=214.6
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
...++.+|.+.|++++|+|++++||+|+.||.|+||++.+++.
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~------------------------------------- 57 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------------------------------------- 57 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------------------------------
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------------------------------------
Confidence 3456789999999999999999999999999999999876643
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS 433 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~ 433 (755)
...+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+
T Consensus 58 -------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 112 (312)
T 4ery_A 58 -------------------------EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 112 (312)
T ss_dssp -------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -------------------------chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 23456799999999999999 99999999999999999999988885 8999999
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
++|+| ++++|++|+.|+.|++||+++++.+ .+..|...|.+++|+|++++|++++.||.|++||+++++.+...
T Consensus 113 ~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---- 187 (312)
T 4ery_A 113 CNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---- 187 (312)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE----
Confidence 99999 9999999999999999999988776 56778889999999999999999999999999999988765432
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCce--EEEEE-ecCCCEEEEEeCCCcE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQ--MFATF-TSDGKHVVSPSEDSNI 589 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v--~~l~f-spdg~~L~sgs~Dg~I 589 (755)
...+...+..++|+| ++.+|++++.|+.|++||..+....... ..|...+ ....+ .+++.+|++|+.||.|
T Consensus 188 ---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 188 ---IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTY--TGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp ---CCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEE--CSSCCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred ---eccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEE--EecCCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence 123456799999999 8999999999999999999886654444 3443332 22334 4688999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+.+++
T Consensus 262 ~vwd~~~~~ 270 (312)
T 4ery_A 262 YIWNLQTKE 270 (312)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCch
Confidence 999998876
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.71 Aligned_cols=306 Identities=10% Similarity=0.121 Sum_probs=236.6
Q ss_pred cce-eeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 229 GAM-ARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 229 ~~~-~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+ .+|.+.+.+++|+| ++++||+|+.||+|+||++....... ....... .+|.+.|.+|+|+|++++|++|+.||
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 344 56778899999999 99999999999999999976421111 1111222 25999999999999999999999999
Q ss_pred cEEEEEcc---CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 307 TVRVWKVI---EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 307 ~I~vWdv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+|||+. +++....+..+ .+..
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~------------------------------------------------------~i~~ 159 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCE------------------------------------------------------CIRK 159 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE------------------------------------------------------EEEE
T ss_pred EEEEEEeccccCCceeeccccc------------------------------------------------------eeEE
Confidence 99999985 33332221100 0111
Q ss_pred --ecC--CCCCEEEEE--EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcE
Q 004410 384 --FQG--HSSEVLDLS--WSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKV 453 (755)
Q Consensus 384 --~~g--h~~~V~~l~--~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V 453 (755)
+.. +...+.++. +++++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeE
Confidence 111 567788888 56788 99999999999999999999998885 789999999999 89999999999999
Q ss_pred EEEEcCCCeEEEe-c-cCCcceEEEEEcc----CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc-------------
Q 004410 454 RIWEVRRCQVVDY-T-DIREIVSAVCYCP----DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG------------- 514 (755)
Q Consensus 454 ~iwdl~~~~~~~~-~-~~~~~V~~v~~sp----dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~------------- 514 (755)
++||+++++.+.. . .+...|++++|+| ++.+|++|+.||.|++||+++++.+..+......
T Consensus 239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 9999999988753 3 6778999996665 6889999999999999999998876654311000
Q ss_pred ---cc--cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee----------------------------
Q 004410 515 ---KK--KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA---------------------------- 561 (755)
Q Consensus 515 ---~~--~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---------------------------- 561 (755)
.. ..+...|++++|+ ++.+|++++.|+.|++||+.+.........
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTS 396 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---
T ss_pred ccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccc
Confidence 00 1256679999999 458999999999999999876543332210
Q ss_pred -------eccCCceEEEEEecC--CCEEEEEeCCCcEEEEE
Q 004410 562 -------FRVAGSQMFATFTSD--GKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 562 -------~~~~~~v~~l~fspd--g~~L~sgs~Dg~I~iWd 593 (755)
..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 128889999999998 88999999999999995
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=314.61 Aligned_cols=345 Identities=17% Similarity=0.164 Sum_probs=263.6
Q ss_pred ccceeeeeccCcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecC-CCEEEEE
Q 004410 228 LGAMARIIDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLD-GQYLASG 302 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspd-g~~LaSg 302 (755)
+..+..|...+.+++|+|+++ ++++++.|+.|++|+..... ..+.+.+|.+ .|.+++|+|+ +++|+++
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 225 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-------FSASDRTHHKQGSFVRDVEFSPDSGEFVITV 225 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-------EEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-------eeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence 344556778888999999998 89999999999999966432 3456788999 9999999999 9999999
Q ss_pred cCCCcEEEEEccCCeeeeee-e---cCCCCCceeEEeeCCC--------CceeEEeecCccee-----------------
Q 004410 303 GEDGTVRVWKVIEHERLDGF-D---VQDTDPSCLYFTINHL--------SQLIPIDVDKEKID----------------- 353 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~-~---~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~----------------- 353 (755)
+.||.|++||+.+++.+..+ . .+...+.++.|. +.. ..+..++.......
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 99999999999999988888 4 566666666666 221 11222222211110
Q ss_pred ----eeeeeeecCCceEEEeCCcceeccCccceEec---------------------------------CCCCCEEEEEE
Q 004410 354 ----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------------------------------GHSSEVLDLSW 396 (755)
Q Consensus 354 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------gh~~~V~~l~~ 396 (755)
....+.++.++.+.+|+.... +++..+. +|...|.+++|
T Consensus 305 ~~~~~~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~ 380 (615)
T 1pgu_A 305 VATGNGRIISLSLDGTLNFYELGHD----EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380 (615)
T ss_dssp EEEETTEEEEEETTSCEEEEETTEE----EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred EeCCCCeEEEEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence 112233445555666654431 2233343 45555666666
Q ss_pred cCCCeEEEEeCCCcEEEEeCC----------------------------------CCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 397 SKNGFLLSSSADKTVRLWQVG----------------------------------IDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 397 s~~~~L~s~s~Dg~V~iWdl~----------------------------------s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
.+.+.|++++.|+.|++||+. +++.+..+.+...+++++|+ ++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 457 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS---QN 457 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC---SS
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc---CC
Confidence 333488888888888888765 45566666788899999997 78
Q ss_pred EEEEEeC-CCcEEEEEcCCCeE--EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC
Q 004410 443 YFISGSI-DGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519 (755)
Q Consensus 443 ~l~sgs~-Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~ 519 (755)
+|++++. |+.|++||+.+++. ..+..|...|++++|+|+|++|++++.||.|++||+.+++.+... ...|
T Consensus 458 ~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-------~~~h 530 (615)
T 1pgu_A 458 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-------WAFR 530 (615)
T ss_dssp EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-------SCCC
T ss_pred EEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe-------ecCC
Confidence 9999999 99999999999877 456778899999999999999999999999999999998876431 1126
Q ss_pred CCCeEEEEEcCC---------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEE
Q 004410 520 GKRITGFQFSPS---------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIY 590 (755)
Q Consensus 520 ~~~I~~v~fsp~---------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~ 590 (755)
...|++++|+|. ++.+|++++.|+.|++||..+...... ....|...|++++|+|+++ |++++.||.|+
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE-ETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech-hhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 789999999994 678999999999999999987632222 2267899999999999999 99999999999
Q ss_pred EEEcCC
Q 004410 591 IWNYSN 596 (755)
Q Consensus 591 iWd~~~ 596 (755)
+|++..
T Consensus 609 iw~~~~ 614 (615)
T 1pgu_A 609 RWNVVL 614 (615)
T ss_dssp EEEEC-
T ss_pred EEeeec
Confidence 999875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=298.21 Aligned_cols=285 Identities=22% Similarity=0.338 Sum_probs=238.7
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
....+.+|.+.+.. ++.+++++|++|+.||.|++|+..... ....+.+|.+.|++++|+|++ +|++|+.||
T Consensus 113 ~~~~l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred ceEEEcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 34456777766532 344567899999999999999976543 345678999999999999988 999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
+|++||+.+++. +..+.+
T Consensus 184 ~i~vwd~~~~~~--------------------------------------------------------------~~~~~~ 201 (464)
T 3v7d_B 184 TVRVWDIKKGCC--------------------------------------------------------------THVFEG 201 (464)
T ss_dssp CEEEEETTTTEE--------------------------------------------------------------EEEECC
T ss_pred CEEEEECCCCcE--------------------------------------------------------------EEEECC
Confidence 999999987753 334567
Q ss_pred CCCCEEEEEEc--CCC-eEEEEeCCCcEEEEeCCCCeE-----------------------EEEE-ecCCcEEEEEEeeC
Q 004410 387 HSSEVLDLSWS--KNG-FLLSSSADKTVRLWQVGIDRC-----------------------LRVF-SHNNYVTSVAFNPV 439 (755)
Q Consensus 387 h~~~V~~l~~s--~~~-~L~s~s~Dg~V~iWdl~s~~~-----------------------~~~~-~h~~~V~~i~fsp~ 439 (755)
|...|.+++|+ +++ +|++++.|++|++||+.++.. +..+ .|...|.++ ++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~- 278 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG- 278 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-
Confidence 99999999998 465 899999999999999987753 2233 478888887 46
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
++++|++|+.||.|++||+++++.+ .+..|...|.+++|+|++++|++|+.||.|++||+++++.+.. ...
T Consensus 279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~ 350 (464)
T 3v7d_B 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQG 350 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeC
Confidence 7899999999999999999998877 5677899999999999999999999999999999999887654 234
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|...|++++|++ .++++++.|+.|++||..+....+.. .+...+..++|++++++|++++ ||.|+|||+.+++
T Consensus 351 h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 351 HTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 678899999974 89999999999999999987655553 3666788899999999999999 8999999999988
Q ss_pred cc
Q 004410 599 KS 600 (755)
Q Consensus 599 ~~ 600 (755)
..
T Consensus 424 ~~ 425 (464)
T 3v7d_B 424 LV 425 (464)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=284.90 Aligned_cols=274 Identities=20% Similarity=0.264 Sum_probs=214.0
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
++|...|...+|-..... ..+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.+...
T Consensus 8 ~~g~d~g~~~~~~~~~~~---~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------- 75 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMT---EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------- 75 (340)
T ss_dssp ---------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------
T ss_pred ccccCCCCccEEEEEccC---CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------
Confidence 345555654444322211 222344678999999999999997 6899999999999999987654211
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD 408 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D 408 (755)
..+...+.+|...|.+++|+|++ +|++++.|
T Consensus 76 ------------------------------------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 76 ------------------------------------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp ------------------------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 12345678999999999999999 99999999
Q ss_pred CcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCC--C
Q 004410 409 KTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDG--K 483 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg--~ 483 (755)
+.|++|+........... +...+..+.+++ ++++|++++.|+.+++||+...... ....|...+..++|++++ .
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 999999999988877774 778889999998 8999999999999999999876654 356678899999999865 5
Q ss_pred eEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec
Q 004410 484 GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR 563 (755)
Q Consensus 484 ~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 563 (755)
.+++++.|+.|++||+.+++.... ...|...|++++|+| ++.+|++++.|+.|++||..+....... .
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~--------~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~ 254 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTN--------HIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTL---D 254 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE--------ECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE---E
T ss_pred EEEEEcCCCEEEEEECCCCceeeE--------ecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeee---c
Confidence 678899999999999999887653 234678999999999 8999999999999999999887655443 3
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 564 VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 564 ~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+...+..++|+|++.++ +++.|+.|+|||+.++.
T Consensus 255 ~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 255 GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred CCceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 55789999999987654 56679999999987654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=304.57 Aligned_cols=278 Identities=19% Similarity=0.253 Sum_probs=229.6
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
...++|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.
T Consensus 102 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~- 173 (420)
T 3vl1_A 102 VDTAKLQMRRFILGTTEGDIKVLDSNFNL-------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN- 173 (420)
T ss_dssp EEEECSSSCEEEEEETTSCEEEECTTSCE-------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-
T ss_pred EEEEecCCCEEEEEECCCCEEEEeCCCcc-------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-
Confidence 35789999999999999999999976433 2344578999999999999999999999999999999976642
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
+..+.+|...|.+++|+|+
T Consensus 174 -------------------------------------------------------------~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 174 -------------------------------------------------------------PRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp -------------------------------------------------------------CEEEECCSSCEEEEEEETT
T ss_pred -------------------------------------------------------------ceEEcCCCCcEEEEEEcCC
Confidence 3456689999999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEE---------------------eeCCCCEEEEEeCCCcE
Q 004410 400 G-FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAF---------------------NPVDDNYFISGSIDGKV 453 (755)
Q Consensus 400 ~-~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~f---------------------sp~d~~~l~sgs~Dg~V 453 (755)
+ +|++++.|++|++||+.+++++..+. +...|.+++| +| ++++|++|+.||.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeE
Confidence 9 99999999999999999999998884 5556666665 56 78899999999999
Q ss_pred EEEEcCCCeEEE-e-ccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeE-eeeeeEEecccccCCCCCeEEEEEc
Q 004410 454 RIWEVRRCQVVD-Y-TDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQL-YQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 454 ~iwdl~~~~~~~-~-~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~-~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
++||+++++.+. . ..|...|++++|+|++. +|++|+.||.|++||++++.. +... ...+...|+++.+.
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYFA 344 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEeC
Confidence 999999987663 3 34778999999999999 999999999999999998753 2211 11245678888665
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceee-------EEEeeeccCCceEEEEEecCCC---EEEEEeCCCcEEEEEcCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGK-------FKASAFRVAGSQMFATFTSDGK---HVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~-------~~~~~~~~~~~v~~l~fspdg~---~L~sgs~Dg~I~iWd~~~ 596 (755)
++.+|++++.|+.|++|++...... .......+...|.+++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 --~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 --AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp --TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred --CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 5679999999999999997762111 0111256788999999999999 888888999999999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=295.68 Aligned_cols=324 Identities=19% Similarity=0.285 Sum_probs=264.9
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
....+.+|.+.+.. ++++++++|++|+.||.|+||+..... ....+.+|.+.|++++|+ +++|++|+.||
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence 34456677665532 467789999999999999999986543 335678999999999997 67999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||+.+++.+..+..+...+.++.+.. ...+.++.++.+.+|+... .+.+..+.+
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------~~l~s~s~dg~i~~wd~~~----~~~~~~~~~ 237 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHE------------------KRVVSGSRDATLRVWDIET----GQCLHVLMG 237 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEET------------------TEEEEEETTSEEEEEESSS----CCEEEEEEC
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecC------------------CEEEEEeCCCEEEEEECCC----CcEEEEEcC
Confidence 999999999998888776665555554421 1245667788888887654 355778889
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
|...|.+++| ++ .|++++.|+.|++||+.+++++..+. |...|.+++| ++.++++|+.||.|++||+++++.+
T Consensus 238 ~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 238 HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 9999999999 45 99999999999999999999998885 8999999998 6789999999999999999998877
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|...+.++.+ ++++|++|+.||.|++||+++++....+. . ...+...|++++|++ .++++++.||
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~-~~~~~~~v~~~~~~~---~~l~s~~~dg 382 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ----G-PNKHQSAVTCLQFNK---NFVITSSDDG 382 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC----S-TTSCSSCEEEEEECS---SEEEEEETTS
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEc----c-CCCCCCCEEEEEECC---CEEEEEeCCC
Confidence 56678888888777 56799999999999999999887765322 1 223678899999964 8999999999
Q ss_pred cEEEEECCcceeeEEEe---eeccCCceEEEEEecCCCEEEEEeCCCc----EEEEEcCCC
Q 004410 544 LVRVLCGENVVGKFKAS---AFRVAGSQMFATFTSDGKHVVSPSEDSN----IYIWNYSNQ 597 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~Dg~----I~iWd~~~~ 597 (755)
.|++||..+........ ...+.+.|.+++|+|++.+|++|+.||+ |.|||+...
T Consensus 383 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 383 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999998765444331 1357789999999999999999999998 999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=296.12 Aligned_cols=279 Identities=19% Similarity=0.308 Sum_probs=228.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
.+.++|+++ ++||+|. |++|+|||..++... ..-.+.+|.+.|++|+|+|||++||+|+.||.|+|||+.+++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 345899986 4777775 899999998765421 111345788999999999999999999999999999998775
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
. +..+.+|...|.+++|+
T Consensus 181 ~--------------------------------------------------------------~~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 181 R--------------------------------------------------------------LRNMTSHSARVGSLSWN 198 (420)
T ss_dssp E--------------------------------------------------------------EEEECCCSSCEEEEEEE
T ss_pred E--------------------------------------------------------------EEEEeCCCCceEEEeeC
Confidence 4 34456799999999886
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-----EEEeccCC
Q 004410 398 KNGFLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-----VVDYTDIR 470 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-----~~~~~~~~ 470 (755)
+. .|++++.|+.+++||.... ..+..+ .|...+..+.++| ++.++++++.|+.|++|+...++ ......+.
T Consensus 199 ~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred CC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 43 8999999999999998764 344444 5999999999999 99999999999999999998764 23567788
Q ss_pred cceEEEEEccCCC-eEEE--EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcE
Q 004410 471 EIVSAVCYCPDGK-GGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~-~la~--gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I 545 (755)
..|.+++|+|++. .+++ |+.|++|++||+.++....... ....+..+.|+| ++..+++++ .|+.|
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---------~~~~v~~~~~~~-~~~~lv~~sg~~d~~I 346 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---------AHSQVCSILWSP-HYKELISGHGFAQNQL 346 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---------CSSCEEEEEEET-TTTEEEEEECTTTCCE
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---------cccceeeeeecC-CCCeEEEEEecCCCEE
Confidence 8999999999665 4444 4579999999999998765422 345789999999 667776655 68999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+|||..+....... .+|.+.|++++|+|||++|+||+.|++|+|||+....+
T Consensus 347 ~iwd~~~~~~v~~l--~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 347 VIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 99999887665554 78999999999999999999999999999999987653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=294.94 Aligned_cols=304 Identities=18% Similarity=0.190 Sum_probs=237.8
Q ss_pred ccccceeeeeccCcceeecC-CCCeeEEeeCCCeEEEEECCCCccccccccc------ceeeecccccEEEEEEec-CCC
Q 004410 226 KKLGAMARIIDRHGSATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYT------GQEFLAHEGSILTMKFSL-DGQ 297 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~------~~~l~~H~~~V~~l~fsp-dg~ 297 (755)
+....+.+|.+.+.+++|+| ++++||+|+.||.|+||++............ .....+|.+.|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 33445667888999999999 9999999999999999998865432211000 011136999999999999 788
Q ss_pred EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 298 YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 298 ~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
+|++++.||.|++||+.+++....+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------------------------- 138 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVF------------------------------------------------------- 138 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------------------
T ss_pred EEEEEeCCCeEEEeeCCCCccceec-------------------------------------------------------
Confidence 9999999999999999877643221
Q ss_pred CccceEecCCCCCEEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCC-EEEEEeCCC
Q 004410 378 EKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDG 451 (755)
Q Consensus 378 ~~~~~~~~gh~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~-~l~sgs~Dg 451 (755)
.+...+.++.|++. + ++++++.|+.|++||+.+++++..+. |...|++++|+| ++. +|++|+.||
T Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg 209 (408)
T 4a11_B 139 --------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADS 209 (408)
T ss_dssp --------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTS
T ss_pred --------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCC
Confidence 25567888888874 3 89999999999999999999888885 999999999999 666 699999999
Q ss_pred cEEEEEcCCCeEE--Ee---------------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 452 KVRIWEVRRCQVV--DY---------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 452 ~V~iwdl~~~~~~--~~---------------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
.|++||+++.... .+ ..|...|++++|+|++++|++++.||.|++||+.+++.......
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 285 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG---- 285 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----
Confidence 9999999876411 22 46778899999999999999999999999999998876432211
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
...........+.+.......+++++.++.|++||..+....... ..|...|++++|+|++++|++++.||.|++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML--KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363 (408)
T ss_dssp CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee--ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence 111111122223333335677888889999999999886665554 678999999999999999999999999999999
Q ss_pred CCCCc
Q 004410 595 SNQDK 599 (755)
Q Consensus 595 ~~~~~ 599 (755)
.+++.
T Consensus 364 ~~~~~ 368 (408)
T 4a11_B 364 SLYEP 368 (408)
T ss_dssp CC---
T ss_pred CCCCc
Confidence 98873
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=315.54 Aligned_cols=287 Identities=13% Similarity=0.084 Sum_probs=212.4
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC------CCEEEEEcCCCcEEEEEccCCeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd------g~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
++.+++++.|++|+||++....... ...+.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.++....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ---------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3344456678999999976543211 112346778899999999997 5799999999999999997653210
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
... .....+...+.+|...|.+++|++++
T Consensus 250 ~~~---------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s~~~ 278 (524)
T 2j04_B 250 HVF---------------------------------------------------KMCEKPSLTLSLADSLITTFDFLSPT 278 (524)
T ss_dssp SEE---------------------------------------------------ECCCSCSEEECCTTTCEEEEEESSSS
T ss_pred ccc---------------------------------------------------eeecCceEEEEcCCCCEEEEEecCCC
Confidence 000 00123455678999999999999878
Q ss_pred eEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEE--EEeeCCC-CEEEEEeCCCcEEEEEcCCCeEE-EeccCC--cc
Q 004410 401 FLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSV--AFNPVDD-NYFISGSIDGKVRIWEVRRCQVV-DYTDIR--EI 472 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i--~fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~--~~ 472 (755)
.|++|+.||+|++||++++. +...+ .|...|++| .|+| ++ .+|++|+.|++|+|||+++++.. .+..|. ..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 99999999999999998763 34444 599999999 4566 76 89999999999999999986643 233333 24
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
|.+++|+|+++.|++++.|++|++||++++..... + ..|...|++++|+| ++.+|++|+.|++|++||...
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~----l----~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP----L----VSRETTITAIGVSR-LHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE----E----EECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCS
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECccccccee----e----ecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechH
Confidence 78999999999999999999999999998765432 1 23678999999999 889999999999999998421
Q ss_pred c-----e-------------------------------------eeEEEeeeccCCceEEEEEecCCC---EEEEEeCCC
Q 004410 553 V-----V-------------------------------------GKFKASAFRVAGSQMFATFTSDGK---HVVSPSEDS 587 (755)
Q Consensus 553 ~-----~-------------------------------------~~~~~~~~~~~~~v~~l~fspdg~---~L~sgs~Dg 587 (755)
. . ........+|...|.+++|+|++. .|++|+.||
T Consensus 429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 0 0 000111234677899999999964 999999999
Q ss_pred cEEEEEcCCC
Q 004410 588 NIYIWNYSNQ 597 (755)
Q Consensus 588 ~I~iWd~~~~ 597 (755)
.|+||++...
T Consensus 509 ~vrlw~l~~~ 518 (524)
T 2j04_B 509 LLTLEYLSLE 518 (524)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=285.08 Aligned_cols=253 Identities=17% Similarity=0.242 Sum_probs=205.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~ 307 (755)
.+.+|.+.|.+++|+|+|++||+|+.|++|+||++..... ...+++.+|.+.|++++|+| ++++||||+.|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 4567888899999999999999999999999999864321 23457889999999999986 4899999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.+++. ..+..+.+|
T Consensus 79 v~iWd~~~~~~------------------------------------------------------------~~~~~~~~h 98 (297)
T 2pm7_B 79 VMIWKEENGRW------------------------------------------------------------SQIAVHAVH 98 (297)
T ss_dssp EEEEEBSSSCB------------------------------------------------------------CCCEEECCC
T ss_pred EEEEEcCCCce------------------------------------------------------------EEEEEeecC
Confidence 99999876531 113446679
Q ss_pred CCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe---EEEEEecCCcEEEEEEeeC------------CCCEEEEEeC
Q 004410 388 SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR---CLRVFSHNNYVTSVAFNPV------------DDNYFISGSI 449 (755)
Q Consensus 388 ~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~---~~~~~~h~~~V~~i~fsp~------------d~~~l~sgs~ 449 (755)
...|.+++|+|+ + +|++++.|++|++||+.++. ......|...|.+++|+|. ++++|++|+.
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~ 178 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEET
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC
Confidence 999999999997 6 89999999999999998763 2223359999999999993 1579999999
Q ss_pred CCcEEEEEcCCCe----EE-EeccCCcceEEEEEccCC---CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 450 DGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 450 Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
|++|+|||+++++ .. .+..|...|.+++|+|++ .+|++++.|++|++||+.+........ .+ ....+..
T Consensus 179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~-~~--~~~~~~~ 255 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT-LL--KEEKFPD 255 (297)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-ES--SSSCCSS
T ss_pred CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee-ee--ecccCCC
Confidence 9999999998754 33 577899999999999985 899999999999999998743111000 01 1123567
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.|.+++|+| ++.+|++++.|+.|+||+..
T Consensus 256 ~v~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 899999999 89999999999999999865
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=278.03 Aligned_cols=278 Identities=19% Similarity=0.297 Sum_probs=224.1
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
.+.++||+++ +||+|. |++|+|||..++... . ...+.+|...|++++|+|++++||+|+.||+|+||++.+++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-~----~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-Q----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-E----EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-E----EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 3569999986 777764 899999998765421 1 11345788999999999999999999999999999998876
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.+ ..+.+|...+.++.+.
T Consensus 101 ~~--------------------------------------------------------------~~~~~h~~~~~~~~~~ 118 (318)
T 4ggc_A 101 RL--------------------------------------------------------------RNMTSHSARVGSLSWN 118 (318)
T ss_dssp EE--------------------------------------------------------------EEEECCSSCEEEEEEE
T ss_pred eE--------------------------------------------------------------EEecCccceEEEeecC
Confidence 43 3456788888776665
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCe-EEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-----EEeccCC
Q 004410 398 KNGFLLSSSADKTVRLWQVGIDR-CLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV-----VDYTDIR 470 (755)
Q Consensus 398 ~~~~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~-----~~~~~~~ 470 (755)
+. .+++++.++.+++|+..... .+..+ .|...+.++.+.+ ++++|++++.|+.|++||+++++. .....+.
T Consensus 119 ~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 32 89999999999999987654 33443 5999999999999 999999999999999999987642 3456677
Q ss_pred cceEEEEEccCCCeE---EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcE
Q 004410 471 EIVSAVCYCPDGKGG---IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~l---a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I 545 (755)
..|.+++++|++..+ ++++.++.|++||......... ..+...+..+.|+| ++..+++++ .|+.|
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------VDAHSQVCSILWSP-HYKELISGHGFAQNQL 266 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---------EECSSCEEEEEEET-TTTEEEEEECTTTCCE
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---------ccceeeeeeeeecc-cccceEEEEEcCCCEE
Confidence 889999999977644 3566789999999998776542 22456799999999 666666554 79999
Q ss_pred EEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|||..+....... .+|.+.|++++|+|||++|+||+.||+|+|||+....
T Consensus 267 ~iwd~~~~~~~~~l--~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 VIWKYPTMAKVAEL--KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999887665554 7799999999999999999999999999999997654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=322.69 Aligned_cols=332 Identities=12% Similarity=0.127 Sum_probs=235.4
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
...|.+++|+| |++|++++.|++|+|||+..... ...+. |.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-------~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-------LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-------EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-------EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 45678899999 88999999999999999876432 22333 67899999999999999999999999999999
Q ss_pred CCeee-----------eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 315 EHERL-----------DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 315 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
++... ..+..+...+.++.|.+.+.. ..+.+..++.+ +|+.... +++..
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~---------------~l~~g~~dg~v-lWd~~~~----~~~~~ 188 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG---------------TVLISYEYVTL-TYSLVEN----EIKQS 188 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE---------------EEEEECSSCEE-EEETTTT----EEEEE
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccCCCC---------------EEEEEeCCCcE-EEECCCC----ceEEE
Confidence 88753 112233445556666553211 23344556666 7765432 22333
Q ss_pred ecC------------------CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE--Ee----c-----------
Q 004410 384 FQG------------------HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV--FS----H----------- 427 (755)
Q Consensus 384 ~~g------------------h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~--~~----h----------- 427 (755)
+.+ |...|.+++|+|++ +|++++.|++|++||+.+++++.. +. |
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~ 268 (902)
T 2oaj_A 189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSS 268 (902)
T ss_dssp ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCS
T ss_pred EecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCc
Confidence 333 35779999999998 899999999999999877665432 10 1
Q ss_pred --CCcEEEEEEe--------------------------------------------------------------------
Q 004410 428 --NNYVTSVAFN-------------------------------------------------------------------- 437 (755)
Q Consensus 428 --~~~V~~i~fs-------------------------------------------------------------------- 437 (755)
...|++++|+
T Consensus 269 ~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 348 (902)
T 2oaj_A 269 TNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNI 348 (902)
T ss_dssp SCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEE
T ss_pred cccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEE
Confidence 1233333332
Q ss_pred --------------------------------------------------------------------------------
Q 004410 438 -------------------------------------------------------------------------------- 437 (755)
Q Consensus 438 -------------------------------------------------------------------------------- 437 (755)
T Consensus 349 ~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~ 428 (902)
T 2oaj_A 349 LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKD 428 (902)
T ss_dssp EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCC
T ss_pred EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCC
Confidence
Q ss_pred ----------------eCCCCEEEEEeCCCcEEEEEcCCCeE-----EE--ec-----cCCcceEEEEEccCCCeEEEEe
Q 004410 438 ----------------PVDDNYFISGSIDGKVRIWEVRRCQV-----VD--YT-----DIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 438 ----------------p~d~~~l~sgs~Dg~V~iwdl~~~~~-----~~--~~-----~~~~~V~~v~~spdg~~la~gs 489 (755)
| ++++|++|+.|++|++||+.++.. .. +. .|...|++++|+|||++||+|+
T Consensus 429 ~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs 507 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI 507 (902)
T ss_dssp CSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE
T ss_pred CcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe
Confidence 2 344566666777777777665431 11 11 5667899999999999999999
Q ss_pred CCCcEEEEECCCCeEeee------e-------------------------------eEEecccccCCCCCeEEEEEcCCC
Q 004410 490 MTGNCRFYDIKDNQLYQQ------N-------------------------------QICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 490 ~dg~I~iwD~~~~~~~~~------~-------------------------------~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
.||+|+|||+.+++.... . ..........|...|++++|+| +
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-d 586 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-I 586 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-T
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-C
Confidence 999999999987632100 0 0000112334788999999999 7
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEee---e-ccCCceEEEEEe-----cCC---CEEEEEeCCCcEEEEEc---CCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASA---F-RVAGSQMFATFT-----SDG---KHVVSPSEDSNIYIWNY---SNQ 597 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---~-~~~~~v~~l~fs-----pdg---~~L~sgs~Dg~I~iWd~---~~~ 597 (755)
+ +|++|+.|++|+|||.......+.... . +|...|++++|+ ||| ++|++|+.|++|++||+ .+|
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 8 999999999999999877554433221 1 688889999999 886 89999999999999999 454
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
+
T Consensus 666 ~ 666 (902)
T 2oaj_A 666 K 666 (902)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=283.73 Aligned_cols=253 Identities=18% Similarity=0.213 Sum_probs=199.2
Q ss_pred ccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 275 YTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 275 ~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
...+.+.+|.+.|++++|+|+ +||+|+.|++|+||++..+...
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~----------------------------------- 47 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT----------------------------------- 47 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------------------------------
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------------------------------
Confidence 345678899999999999988 9999999999999998654210
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEe-c-CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------CeEEEE
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEF-Q-GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-------DRCLRV 424 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-------~~~~~~ 424 (755)
.+..+ . +|...|.+++|+|++ +|++++.|++|+|||+.. .+++..
T Consensus 48 -------------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 102 (330)
T 2hes_X 48 -------------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI 102 (330)
T ss_dssp -------------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEE
T ss_pred -------------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEE
Confidence 01222 2 399999999999999 999999999999999853 345556
Q ss_pred E-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEE
Q 004410 425 F-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD 498 (755)
Q Consensus 425 ~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD 498 (755)
+ .|...|++++|+| ++++|++|+.|++|++||++.. +++ .+..|...|.+++|+|++.+|++|+.|++|++||
T Consensus 103 ~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 103 IEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp EC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 6 4999999999999 9999999999999999999532 333 5678899999999999999999999999999999
Q ss_pred CCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC-CCEEEEEECCCcEEEEECCcce----e--eEEEeee-ccCCceEE
Q 004410 499 IKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD-PSKVIVTSADSLVRVLCGENVV----G--KFKASAF-RVAGSQMF 570 (755)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d-~~~l~s~s~Dg~I~iwd~~~~~----~--~~~~~~~-~~~~~v~~ 570 (755)
+.++..... .....|...|.+++|+|+. +..|++++.|++|++||..... . ....... .|...|.+
T Consensus 182 ~~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 255 (330)
T 2hes_X 182 DYDDDWECV------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255 (330)
T ss_dssp EETTEEEEE------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEE
T ss_pred CCCCCeeEE------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEE
Confidence 887632111 1133567899999999932 5689999999999999976431 0 1112122 38889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
++|++++ +|++++.||.|+||++.++
T Consensus 256 v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 256 VAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 9999665 8999999999999997644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=293.17 Aligned_cols=252 Identities=17% Similarity=0.272 Sum_probs=199.6
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~--------------------------------------- 48 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI--------------------------------------- 48 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------------------------
Confidence 46789999999999999999999999999999998765311
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVT 432 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~ 432 (755)
.+..+.+|...|.+++|+++ + +|++++.|++|++||+.+++ .+..+ .|...|+
T Consensus 49 ---------------------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~ 107 (316)
T 3bg1_A 49 ---------------------LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107 (316)
T ss_dssp ---------------------EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC
T ss_pred ---------------------EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE
Confidence 13457789999999999863 5 99999999999999998874 44555 4999999
Q ss_pred EEEEeeCC--CCEEEEEeCCCcEEEEEcCCCeE----EEeccCCcceEEEEEccC-----------------CCeEEEEe
Q 004410 433 SVAFNPVD--DNYFISGSIDGKVRIWEVRRCQV----VDYTDIREIVSAVCYCPD-----------------GKGGIVGT 489 (755)
Q Consensus 433 ~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~~----~~~~~~~~~V~~v~~spd-----------------g~~la~gs 489 (755)
+++|+| + +.+|++|+.|++|++||++.... .....|...|.+++|+|+ +++|++|+
T Consensus 108 ~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 108 SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 999999 5 78999999999999999987632 134567888999999997 47899999
Q ss_pred CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC---CCEEEEEECCCcEEEEECCccee-e-EEEeeecc
Q 004410 490 MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD---PSKVIVTSADSLVRVLCGENVVG-K-FKASAFRV 564 (755)
Q Consensus 490 ~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d---~~~l~s~s~Dg~I~iwd~~~~~~-~-~~~~~~~~ 564 (755)
.|+.|++||++....... ......|...|.+++|+|+. +.+|++++.|++|+||+..+... . .......|
T Consensus 187 ~D~~v~lWd~~~~~~~~~-----~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQWKE-----EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp TTSBCCEEEECTTSCEEE-----EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred CCCeEEEEEeCCCCccce-----eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 999999999975421110 01134577899999999943 37999999999999999876211 0 00111457
Q ss_pred CCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 565 AGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 565 ~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
...|.+++|+|+|++|++++.|+.|+||+...
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 88999999999999999999999999999863
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=296.88 Aligned_cols=329 Identities=15% Similarity=0.266 Sum_probs=231.2
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc----cccccccceeeeccc------------ccEEEEEEecCC--
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR----ELSSLYTGQEFLAHE------------GSILTMKFSLDG-- 296 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~----~~~~~~~~~~l~~H~------------~~V~~l~fspdg-- 296 (755)
.+.|.+++|+|+|++||+|+.||.|+||++..... ....+.....+.+|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 46788899999999999999999999999875442 111222456788998 889999999998
Q ss_pred CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 297 ~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
.+|++++.|+.|++|++.++...............+. .......+. ... ..+..+..
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~--------~~~--------------~~~~~~~~ 164 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR-DPTTVTTLR--------VPV--------------FRPMDLMV 164 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC---------CCCCCSCC--------CCE--------------EEEEEEEE
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCcccccc-CcccccceE--------ecc--------------ccchheee
Confidence 8999999999999999987654321110000000000 000000000 000 00000001
Q ss_pred cCccceEe-cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCeEEEEE--------ecCCcEEEEEEeeCCC-CEE
Q 004410 377 LEKPLHEF-QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVF--------SHNNYVTSVAFNPVDD-NYF 444 (755)
Q Consensus 377 ~~~~~~~~-~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~-s~~~~~~~--------~h~~~V~~i~fsp~d~-~~l 444 (755)
...+...+ .+|...|.+++|+|++ +|+++ .|++|++||+. .++++..+ .|...|++++|+| ++ ++|
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l 242 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTF 242 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEE
Confidence 11222333 6899999999999999 88887 89999999999 45565543 4899999999999 76 999
Q ss_pred EEEeCCCcEEEEEcCCCeE-----EEeccCCc------------ceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeEee
Q 004410 445 ISGSIDGKVRIWEVRRCQV-----VDYTDIRE------------IVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQLYQ 506 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~-----~~~~~~~~------------~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~~~ 506 (755)
++|+.||.|++||+++++. ..+..+.. .|.+++|+|+|++|++++. |.|++||++. ++.+.
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999999999999998774 45555554 8999999999999999999 9999999997 66554
Q ss_pred eeeEEecccccCCC--------C---CeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe---------------
Q 004410 507 QNQICLQGKKKLPG--------K---RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS--------------- 560 (755)
Q Consensus 507 ~~~~~~~~~~~~~~--------~---~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--------------- 560 (755)
.+.. +..... . .+..++|+| ++.+|++++.|+.|+|||..+........
T Consensus 322 ~~~~----~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 322 TYQV----HEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRK 396 (447)
T ss_dssp CEES----CGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCC
T ss_pred eeec----cccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcc
Confidence 3221 111000 1 134599999 89999999999999999988754322110
Q ss_pred ---------------eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 561 ---------------AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 561 ---------------~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.......|..++|+|++.+|++++.++ +++|.-+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 112345788999999999999998875 8888643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=297.58 Aligned_cols=252 Identities=17% Similarity=0.315 Sum_probs=211.0
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+++.+|.+.|++++|+|++++||||+.||+|+|||+.+++.
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~------------------------------------- 100 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK------------------------------------- 100 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------------------------------
Confidence 4467899999999999999999999999999999999977653
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-e
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVF-S 426 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-~ 426 (755)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+.. ....+ .
T Consensus 101 -------------------------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 101 -------------------------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp -------------------------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred -------------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC
Confidence 23456788899999999999 99999999999999987532 12223 5
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe------ccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEEC
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY------TDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~------~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~ 499 (755)
|...|.++.|.|.++..|++|+.|++|++||+.+++.+.. ..|...|.+++|++ ++.+|++|+.||.|++||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 8999999999995577899999999999999999887743 46788899999987 8899999999999999999
Q ss_pred CCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee-----ccCCceEEEEE
Q 004410 500 KDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF-----RVAGSQMFATF 573 (755)
Q Consensus 500 ~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----~~~~~v~~l~f 573 (755)
+.. ..+.. ...|...|++++|+| ++.+|++++.|++|++||..+.......... .+...|++++|
T Consensus 236 ~~~~~~~~~--------~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 236 RITSRAVRT--------YHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTTCCCCEE--------ECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCCcceEE--------ECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 843 33221 234778999999999 8999999999999999999876554433111 12234889999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+|+|++|++|+.||.|+|||+.+++
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCEEEEECCCCc
Confidence 9999999999999999999998776
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=289.54 Aligned_cols=284 Identities=10% Similarity=0.072 Sum_probs=235.2
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVR 309 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~ 309 (755)
..+|.+.+.+++|+|++++|++|+.|+.|+||++....... ....+.+|...|.+++|+|+++ +|++|+.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 34677889999999999999999999999999976543111 1234568999999999999999 999999999999
Q ss_pred EEEc-cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC--
Q 004410 310 VWKV-IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-- 386 (755)
Q Consensus 310 vWdv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 386 (755)
+|++ .+++. ..+.+
T Consensus 83 ~wd~~~~~~~---------------------------------------------------------------~~~~~~~ 99 (342)
T 1yfq_A 83 KVDLIGSPSF---------------------------------------------------------------QALTNNE 99 (342)
T ss_dssp EECSSSSSSE---------------------------------------------------------------EECBSCC
T ss_pred EEEeccCCce---------------------------------------------------------------EeccccC
Confidence 9998 66531 23456
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
|...|.+++|+| + .|++++.|+.|++||+.+ ++++..+.|...|.+++|+| ++ |++++.|+.|++|
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWF 175 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEE
Confidence 999999999999 6 999999999999999987 77777777999999999998 54 9999999999999
Q ss_pred EcCC-CeE---EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCC------eEeeeeeEEeccccc-----CCC
Q 004410 457 EVRR-CQV---VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDN------QLYQQNQICLQGKKK-----LPG 520 (755)
Q Consensus 457 dl~~-~~~---~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~------~~~~~~~~~~~~~~~-----~~~ 520 (755)
|+++ ... .....+...|.+++|+| ++++|++++.+|.|++|++... +.... +..+.. .+.
T Consensus 176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 251 (342)
T 1yfq_A 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----FRCHRLNLKDTNLA 251 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE----EECCCCCTTCCSSC
T ss_pred ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee----eecccccccccccc
Confidence 9998 432 24556788999999999 9999999999999999999876 33322 222111 234
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc-CCceEEEEEecCCCEEEEEeCCCc-EEEEEc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV-AGSQMFATFTSDGKHVVSPSEDSN-IYIWNY 594 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~v~~l~fspdg~~L~sgs~Dg~-I~iWd~ 594 (755)
..|++++|+| ++.+|++++.||.|++||..+....... ..| ...|.+++ |++++|++++.||. .+.|..
T Consensus 252 ~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 252 YPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF--AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC--CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred eeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhh--hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 5899999999 8899999999999999999876655443 566 88999999 99999999999998 555553
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=289.34 Aligned_cols=257 Identities=19% Similarity=0.270 Sum_probs=214.4
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|++++|+|++++||+|+.||.|+||++.....
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------- 45 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------------------- 45 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE--------------------------------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc--------------------------------------
Confidence 356889999999999999999999999999999999864321
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~ 430 (755)
+.+..+.+|...|.+++|+++ + +|++++.|+.|++||+.+++ .+..+ .|...
T Consensus 46 ----------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 103 (379)
T 3jrp_A 46 ----------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS 103 (379)
T ss_dssp ----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred ----------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc
Confidence 124557789999999999876 6 99999999999999999987 55555 38999
Q ss_pred EEEEEEeeCC--CCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEcc-------------CCCeEEEEeCCC
Q 004410 431 VTSVAFNPVD--DNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCP-------------DGKGGIVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~la~gs~dg 492 (755)
|++++|+| + +++|++++.|+.|++||++.. .......|...|.+++|+| ++.+|++|+.||
T Consensus 104 v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 182 (379)
T 3jrp_A 104 VNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182 (379)
T ss_dssp EEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred eEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence 99999999 7 899999999999999999886 3445678899999999999 699999999999
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceee---EEEeeeccCCc
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGK---FKASAFRVAGS 567 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~ 567 (755)
.|++||++++........ ....|...|++++|+|+. +.+|++++.|+.|++||....... .......|...
T Consensus 183 ~i~i~d~~~~~~~~~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 258 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258 (379)
T ss_dssp CEEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC
T ss_pred eEEEEEecCCCcceeeEE----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc
Confidence 999999987654322222 233467899999999932 899999999999999998875322 22222347889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 568 v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|++++|+|+|++|++++.||.|++|++..+.
T Consensus 259 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 259 LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9999999999999999999999999998653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=300.55 Aligned_cols=278 Identities=15% Similarity=0.188 Sum_probs=219.3
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..|+|++..++++. .|+... ...+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.
T Consensus 33 ~~f~~~~~~~~~~~------~w~~~g--------~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 33 KEFGPIQEIVRSPN------MGNLRG--------KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GGGCCCCCCCCCCC------GGGCCC--------CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred hhcCCccccccccc------cccccc--------eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 56899999888765 365332 223456 78999999999999 999999999999999999865210
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
... ......+ +|...|.+++|+|
T Consensus 99 ~~~--------------------------------------------------------~~~~~~~-~h~~~v~~~~~~~ 121 (437)
T 3gre_A 99 GEV--------------------------------------------------------YSSSLTY-DCSSTVTQITMIP 121 (437)
T ss_dssp TCC--------------------------------------------------------CSCSEEE-ECSSCEEEEEECT
T ss_pred Ccc--------------------------------------------------------cceeeec-cCCCCEEEEEEeC
Confidence 000 0011222 4899999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCC---CCeEEEEEe-------------cCCcEEEEE--EeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 399 NG-FLLSSSADKTVRLWQVG---IDRCLRVFS-------------HNNYVTSVA--FNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 399 ~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~-------------h~~~V~~i~--fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
++ +|++++.|++|++||+. +++++..+. +...+.++. ++| ++.+|++|+.|+.|++||++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Confidence 88 99999999999999994 554444332 566777777 456 78999999999999999999
Q ss_pred CCeEE-Eecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC---CC
Q 004410 460 RCQVV-DYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS---DP 533 (755)
Q Consensus 460 ~~~~~-~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~---d~ 533 (755)
+++.+ .+.. |...|++++|+|++++|++|+.||.|++||+++++.+..+. ..+...|++++|+|. ++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~s~~~ 273 (437)
T 3gre_A 201 TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-------FGDHAPITHVEVCQFYGKNS 273 (437)
T ss_dssp TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-------CTTCEEEEEEEECTTTCTTE
T ss_pred CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-------cCCCCceEEEEeccccCCCc
Confidence 98877 3444 78899999999999999999999999999999988765422 134568999977762 56
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEee----------------------e--ccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASA----------------------F--RVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----------------------~--~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
.+|++++.|+.|+|||..+......... . .|...|++++|+ ++++|++|+.|+.|
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i 352 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI 352 (437)
T ss_dssp EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence 7999999999999999987654433321 1 166779999999 88999999999999
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+.+++
T Consensus 353 ~~wd~~~~~ 361 (437)
T 3gre_A 353 VMFSLNELS 361 (437)
T ss_dssp EEEETTCGG
T ss_pred EEEECCCcc
Confidence 999999876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=318.50 Aligned_cols=292 Identities=19% Similarity=0.262 Sum_probs=248.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.+.+|.+.+.+++|+|++++||+|+.+|.|+||++..+. ..+.+.+|.+.|.+++|+|++++||+++.||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 345678899999999999999999999999999999976543 3356788999999999999999999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|+|||+.+++. +..+.+
T Consensus 78 ~i~vw~~~~~~~--------------------------------------------------------------~~~~~~ 95 (814)
T 3mkq_A 78 RIRVFNYNTGEK--------------------------------------------------------------VVDFEA 95 (814)
T ss_dssp EEEEEETTTCCE--------------------------------------------------------------EEEEEC
T ss_pred eEEEEECCCCcE--------------------------------------------------------------EEEEec
Confidence 999999987653 344567
Q ss_pred CCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID-RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~-~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
|...|.+++|+|++ +|++++.|++|++||+.++ .+...+ .|...|.+++|+|.++++|++++.||.|++||+.++..
T Consensus 96 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC
T ss_pred CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 99999999999999 9999999999999999987 666666 48999999999996678999999999999999987654
Q ss_pred E-Eec-cCCcceEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 V-DYT-DIREIVSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ~-~~~-~~~~~V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. ... .+...+.+++|+| ++.+|++++.||.|++||+.+++..... ..|...|++++|+| ++.+++++
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~ 246 (814)
T 3mkq_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL--------EGHMSNVSFAVFHP-TLPIIISG 246 (814)
T ss_dssp SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECS-SSSEEEEE
T ss_pred eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcC-CCCEEEEE
Confidence 4 333 3448899999999 9999999999999999999998876532 23567899999999 88999999
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.||.|++||..+....... ..+...+.+++|+|+|.. +++++.|+.+.+|++..+.
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEE--CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred eCCCeEEEEECCCCcEEEEe--ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 99999999999876555544 567789999999999974 2445557789999987665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=295.72 Aligned_cols=252 Identities=12% Similarity=0.117 Sum_probs=196.1
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+..|.+.|++++|+|+|++||+|+.|+.|+||++.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445778999999999999999999999999999876521
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe---EEEE-EecCCcEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR---CLRV-FSHNNYVTSV 434 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~---~~~~-~~h~~~V~~i 434 (755)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ .... ..|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1134456899999999999999 99999999999999999877 3333 3699999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCe----EEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeee--
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQ----VVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQ-- 507 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~-- 507 (755)
+|+| ++++|++++.|+.|++||+++++ ...+.. |...|++++|+|++++|++++.||.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999876 335555 899999999999999999999999999999964331110
Q ss_pred ---------eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE--EEeeeccCCceEEEEEecC
Q 004410 508 ---------NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF--KASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 508 ---------~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~v~~l~fspd 576 (755)
...... .. .|...|++++|+| ++.+|++++.|+.|++||..+..... ......|...|.+++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCA-EY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE 262 (377)
T ss_dssp SCSSCSCCCEEEEEE-CC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred ccccccccchhhhhh-cc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence 000111 12 5778899999999 88999999999999999988765411 2223668889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 004410 577 GKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~ 596 (755)
|++|++++.|+.+ +|+...
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC
T ss_pred CCEEEEEcCCcEE-EEEeCC
Confidence 9999998766555 777664
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=278.64 Aligned_cols=255 Identities=17% Similarity=0.266 Sum_probs=212.3
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|++|+|+|++++||+|+.||.|+||++.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4567999999999999999999999999999999987653210
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCC---------eEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGID---------RCLRVF 425 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~---------~~~~~~ 425 (755)
+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 12455678999999999999 46 9999999999999999887 555555
Q ss_pred -ecCCcEEEEEEeeCC--CCEEEEEeCCCcEEEEEcCCCeEEE--------------eccCCcceEEEEEccC---CCeE
Q 004410 426 -SHNNYVTSVAFNPVD--DNYFISGSIDGKVRIWEVRRCQVVD--------------YTDIREIVSAVCYCPD---GKGG 485 (755)
Q Consensus 426 -~h~~~V~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~~~~~--------------~~~~~~~V~~v~~spd---g~~l 485 (755)
.|...|.+++|+| + +++|++++.||.|++||+++++.+. ...+...+.+++|+|+ +..|
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 4899999999999 7 9999999999999999998765331 1256778999999997 9999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC----CEEEEEECCCcEEEEECCcce-------
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP----SKVIVTSADSLVRVLCGENVV------- 554 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~----~~l~s~s~Dg~I~iwd~~~~~------- 554 (755)
++++.++.+.+|+...+...... ....|...|++++|+| ++ .+|++++.|+.|++||.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEEE------ECCCCCSCEEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred EEecCCCcEEEEccCCCceeeee------ecCCCCcceeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 99999999988888877653211 1334678999999999 55 799999999999999987531
Q ss_pred -------------------------------------eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 555 -------------------------------------GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 555 -------------------------------------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
.........|...|++++|+|++++|++++.||.|+||++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 1233333568899999999999999999999999999999987
Q ss_pred C
Q 004410 598 D 598 (755)
Q Consensus 598 ~ 598 (755)
+
T Consensus 339 ~ 339 (351)
T 3f3f_A 339 N 339 (351)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=294.58 Aligned_cols=293 Identities=20% Similarity=0.251 Sum_probs=235.7
Q ss_pred CcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...++++|+...++ +++.+|.|+||++....... .....+.+|.+.|++++|+| ++++||+|+.||.|+||++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 34588888877544 57889999999986544321 22345789999999999999 999999999999999999987
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+...... ..++..+.+|...|.+++
T Consensus 114 ~~~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 114 GGLVLPL-------------------------------------------------------REPVITLEGHTKRVGIVA 138 (402)
T ss_dssp TCCSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEE
T ss_pred CCCcccc-------------------------------------------------------CCceEEecCCCCeEEEEE
Confidence 6432100 134667889999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--e-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--cc
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--S-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TD 468 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~ 468 (755)
|+|++ .|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+.. ..
T Consensus 139 ~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp ECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred ECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence 99996 8999999999999999999999888 3 899999999999 999999999999999999999988743 45
Q ss_pred CCcc-eEEEEEccCCCeEEEE---eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE-EEECCC
Q 004410 469 IREI-VSAVCYCPDGKGGIVG---TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI-VTSADS 543 (755)
Q Consensus 469 ~~~~-V~~v~~spdg~~la~g---s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~Dg 543 (755)
|... +.+++|+|++++|++| +.++.|++||++++....... ...+...+..++|+| ++.+|+ +++.|+
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~-~~~~l~~~g~~dg 290 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDP-DTNIVYLCGKGDS 290 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEET-TTTEEEEEETTCS
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE------eccCCCceeEEEEcC-CCCEEEEEEcCCC
Confidence 6655 8999999999999999 789999999999865421110 112456799999999 777776 455799
Q ss_pred cEEEEECCccee-eEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 544 LVRVLCGENVVG-KFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 544 ~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++||..+... ........+...|.+++|+|++.++++ .|+.+++|++.++.
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999999887553 222222446789999999999998875 56799999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=285.76 Aligned_cols=297 Identities=14% Similarity=0.203 Sum_probs=237.7
Q ss_pred ccccceeeeeccCcceeecCC---CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE
Q 004410 226 KKLGAMARIIDRHGSATLKPG---DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spd---g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg 302 (755)
+.+..+.+|.+.+.+++|+|+ |++|++|+.||.|+||++...... ....+.+|.+.|.+++|+|++++|+++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----IPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----eEEEeccccCCEEEEEECcCCCEEEEE
Confidence 344567788899999999999 599999999999999998753221 224578899999999999999999999
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
+.||.|++||+.+++.+
T Consensus 105 ~~dg~v~iwd~~~~~~~--------------------------------------------------------------- 121 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAI--------------------------------------------------------------- 121 (368)
T ss_dssp ETTSEEEEEETTTTEEE---------------------------------------------------------------
T ss_pred cCCCcEEEEEcCCCCce---------------------------------------------------------------
Confidence 99999999999876532
Q ss_pred EecCCCCCEEEEEE--cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 383 EFQGHSSEVLDLSW--SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 383 ~~~gh~~~V~~l~~--s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
.+.+|...|.+++| ++++ +|++++.|+.|++||+.+++++..+.....+.++.+.+ ..+++++.++.+++|+++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 122 QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLE 198 (368)
T ss_dssp EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECS
T ss_pred eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEec
Confidence 13458899999999 8888 89999999999999999999999998777888887765 588899999999999998
Q ss_pred CCeEEE---eccCCcceEEEEEccCCCe----EEEEeCCCcEEEEECCCCeEeeeeeEEecccc--------cCCCCCeE
Q 004410 460 RCQVVD---YTDIREIVSAVCYCPDGKG----GIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK--------KLPGKRIT 524 (755)
Q Consensus 460 ~~~~~~---~~~~~~~V~~v~~spdg~~----la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~--------~~~~~~I~ 524 (755)
...... ...+...+.++++.++... +++++.||.|++||++........ ..+..+. ..+...|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 199 NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN-FTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS-EEEECSEEC----CCCEEECCEE
T ss_pred cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc-eeeeeeecccccccccccccceE
Confidence 765442 2234456677777776655 999999999999999987421100 0111111 11223799
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+++|+| ++.+|++++.||.|++||..+....... ..|...|.+++|+|+|++|++++.|+..+.|++-+.
T Consensus 278 ~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 278 GIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTS--EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC--CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEe--cCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 999999 8899999999999999999986655444 678899999999999999999999987666665443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=307.54 Aligned_cols=250 Identities=20% Similarity=0.331 Sum_probs=212.9
Q ss_pred eeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
..+.+|.+.|++|+|+|++ ++|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 4588999999999999864 799999999999999986542100
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i 434 (755)
......+.+|...|.+++|+|++ +|++++.|++|+|||+.+++++..+ .|...|.++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 11234678999999999999999 9999999999999999999998887 499999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccCCcceEEEEEccCC--CeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDG--KGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg--~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
+|+| ++++|++|+.|++|++||+........ ..|...|.+++|+|++ ..|++|+.||+|++||++++++...
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~- 556 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST- 556 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-
Confidence 9999 999999999999999999977655443 3577889999999987 5799999999999999998876543
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
...|...|++++|+| ++.+|++++.|+.|+|||+.+...... ..+...|.+++|+|++.+|++++ |+.
T Consensus 557 -------~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~-~~~ 624 (694)
T 3dm0_A 557 -------LAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS---LEANSVIHALCFSPNRYWLCAAT-EHG 624 (694)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEEC---CBCSSCEEEEEECSSSSEEEEEE-TTE
T ss_pred -------EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEE---ecCCCcEEEEEEcCCCcEEEEEc-CCC
Confidence 234678999999999 899999999999999999988655443 34567899999999999888776 556
Q ss_pred EEEEEcCCCC
Q 004410 589 IYIWNYSNQD 598 (755)
Q Consensus 589 I~iWd~~~~~ 598 (755)
|+|||+.+++
T Consensus 625 i~iwd~~~~~ 634 (694)
T 3dm0_A 625 IKIWDLESKS 634 (694)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 9999998765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=286.23 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=199.3
Q ss_pred eeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCcE
Q 004410 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGTV 308 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~I 308 (755)
+.+|.+.|.+++|+|+|++||+|+.|++|+||++..... .....+.+|.+.|++++|+| ++++||+|+.|++|
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 457888999999999999999999999999999765432 12356889999999999986 48999999999999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.++.. ..+..+.+|.
T Consensus 84 ~iWd~~~~~~------------------------------------------------------------~~~~~~~~h~ 103 (316)
T 3bg1_A 84 IIWREENGTW------------------------------------------------------------EKSHEHAGHD 103 (316)
T ss_dssp EEECCSSSCC------------------------------------------------------------CEEEEECCCS
T ss_pred EEEECCCCcc------------------------------------------------------------eEEEEccCCC
Confidence 9999876531 1134567899
Q ss_pred CCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEE---EEE-ecCCcEEEEEEeeCC-----------------CCEE
Q 004410 389 SEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCL---RVF-SHNNYVTSVAFNPVD-----------------DNYF 444 (755)
Q Consensus 389 ~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~---~~~-~h~~~V~~i~fsp~d-----------------~~~l 444 (755)
..|.+++|+|+ + +|++++.|++|++||+..+... ..+ .|...|.+++|+| + +.+|
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 182 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRF 182 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceE
Confidence 99999999997 6 8999999999999999876322 222 4888999999999 5 4689
Q ss_pred EEEeCCCcEEEEEcCCC---eEE-EeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 445 ISGSIDGKVRIWEVRRC---QVV-DYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~---~~~-~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
++|+.|++|++||++.. +.+ .+..|...|.+++|+|++ ++|++|+.||+|++||+.+.......... .
T Consensus 183 ~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~----~ 258 (316)
T 3bg1_A 183 ASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL----L 258 (316)
T ss_dssp ECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE----E
T ss_pred EEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh----h
Confidence 99999999999999754 233 567899999999999986 88999999999999999863110000000 1
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..+...|++++|+| ++.+|++++.|+.|+||+..
T Consensus 259 ~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 259 HKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred hcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 22467899999999 88999999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=284.89 Aligned_cols=299 Identities=13% Similarity=0.176 Sum_probs=230.6
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEc----cCCe------eeeeeec--
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKV----IEHE------RLDGFDV-- 324 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv----~~~~------~~~~~~~-- 324 (755)
.+.+|+.......+ ....|.+.|.+++|+|+|+ +||+|+.||.|+||++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL-------KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPF 98 (425)
T ss_dssp --------CCCEEC-------EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCC
T ss_pred ccccccchhhhhhe-------eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccc
Confidence 34567654433222 2345679999999999999 9999999999999999 8877 3333333
Q ss_pred --------CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 325 --------QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 325 --------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+...+.++.|.++. ..++.++.++.+.+|+ .....+..+.+|...|.+++|
T Consensus 99 ~~~~~~~~~~~~v~~~~~s~~~----------------~~l~~~~~dg~i~i~~-----~~~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 99 ALSASSGKTTNQVTCLAWSHDG----------------NSIVTGVENGELRLWN-----KTGALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp CCC------CBCEEEEEECTTS----------------SEEEEEETTSCEEEEE-----TTSCEEEEECCCCSCEEEEEE
T ss_pred cccccccCCCCceEEEEEcCCC----------------CEEEEEeCCCeEEEEe-----CCCCeeeeccCCCccEEEEEE
Confidence 12233444444322 1233455666777775 345667888999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc---------------EEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY---------------VTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~---------------V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + ..+++++.||.|++||+.
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETT
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcC
Confidence 9999 99999999999999999999988885 4444 99999998 5 568999999999999999
Q ss_pred CCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 460 RCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 460 ~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
+++.+ .+..|...|.+++|+|++++|++++.||.|++||+.+++.... ...+...|++++|+| ++ ++++
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~ 305 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQSIVSASWVG-DD-KVIS 305 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSSCEEEEEEET-TT-EEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCccEEEEEECC-CC-EEEE
Confidence 87665 5667889999999999999999999999999999998765543 233667899999999 66 9999
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++.|+.|++||..+....... ..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALS--IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEE--ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EeCCCcEEEEECCCCcEeEec--ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999876655544 5688899999999999999999999999999998664
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-30 Score=287.98 Aligned_cols=268 Identities=23% Similarity=0.452 Sum_probs=221.8
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
.++++++++|++|+.||.|+||+..+.. ....+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-- 205 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-- 205 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE--
Confidence 3566699999999999999999976543 33567899999999999 789999999999999999987653
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
+..+.+|...|.+++|++ +
T Consensus 206 ------------------------------------------------------------~~~~~~h~~~v~~l~~~~-~ 224 (435)
T 1p22_A 206 ------------------------------------------------------------LNTLIHHCEAVLHLRFNN-G 224 (435)
T ss_dssp ------------------------------------------------------------EEEECCCCSCEEEEECCT-T
T ss_pred ------------------------------------------------------------EEEEcCCCCcEEEEEEcC-C
Confidence 344567899999999974 4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEE---EEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCL---RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSA 475 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~---~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~ 475 (755)
.|++++.|++|++||+.++... ..+ .|...|.+++| ++++|++|+.||.|++||+++++.+ .+..|...|.+
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE
Confidence 9999999999999999887655 333 48999999998 4689999999999999999998877 56778899999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+++ ++.+|++|+.||.|++||+++++.+.. ...|...|++++| ++.+|++++.||.|++||......
T Consensus 302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~ 368 (435)
T 1p22_A 302 LQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALD 368 (435)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCC
Confidence 999 578999999999999999999877653 2346778999998 568999999999999999765431
Q ss_pred e-------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 556 K-------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~-------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
. .......|.+.|++++| ++++|++++.||.|++||+.+..
T Consensus 369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 0 22223678999999999 78999999999999999998875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=269.70 Aligned_cols=247 Identities=21% Similarity=0.349 Sum_probs=215.5
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
...+.+|.+.|++++|+|++++||+++.||.|+|||+.+++.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------------------- 66 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------------------------------- 66 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--------------------------------------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--------------------------------------
Confidence 346889999999999999999999999999999999877643
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++
T Consensus 67 ------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 67 ------------------------LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ------------------------hhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 34456799999999999999 99999999999999999999999999999999999
Q ss_pred EeeCCCCEEEEEeCC-----CcEEEEEcCCCe------------EEEeccCCc--ceEEEEEccCCCeEEEEeCCCcEEE
Q 004410 436 FNPVDDNYFISGSID-----GKVRIWEVRRCQ------------VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGNCRF 496 (755)
Q Consensus 436 fsp~d~~~l~sgs~D-----g~V~iwdl~~~~------------~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~I~i 496 (755)
|+| ++++|++++.+ +.|++||+.... ......+.. .+.+++|+|++++|++++.+|.|++
T Consensus 123 ~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 123 FSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred Ecc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 999 99999999999 999999997642 122334444 8999999999999999999999999
Q ss_pred EECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 497 YDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 497 wD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
||+.+ ...... ...+...|++++|+| ++.+|++++.|+.|++||..+....... .+...+..++|+|
T Consensus 202 ~d~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~ 269 (369)
T 3zwl_B 202 YDVSNNYEYVDS--------IDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKY---ETDCPLNTAVITP 269 (369)
T ss_dssp EETTTTTEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECS
T ss_pred EECCCCcEeEEE--------EecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeee---cCCCCceeEEecC
Confidence 99998 554432 233667899999999 8999999999999999999876555443 3778899999999
Q ss_pred CCCEEEEEeCCC--------------cEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDS--------------NIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg--------------~I~iWd~~~~~ 598 (755)
+++++++++.++ .|++||+.+++
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999998 89999998876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=274.89 Aligned_cols=259 Identities=12% Similarity=0.228 Sum_probs=211.6
Q ss_pred eecccccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 280 FLAHEGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 280 l~~H~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+|.+.|++++|+|+ ..++++++.++.|+||++.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4589999999999984 45666666677999999987654433221
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----C-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----G-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~ 429 (755)
+....|...|.+++|+|+ + +|++++.|+.|++||+.+++.+..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237789999999998 6 89999999999999999999998886 999
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
.|++++|+|.++++|++|+.||.|++||+++++.+.. ..|...|.+++|+|++++|++++.||.|++||+++++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 9999999997789999999999999999999888754 578999999999999999999999999999999987644
Q ss_pred eeeeE--------------------EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------
Q 004410 506 QQNQI--------------------CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG---------- 555 (755)
Q Consensus 506 ~~~~~--------------------~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~---------- 555 (755)
..... ........+...|++++|+ +.++++++.|+.|++||..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 22110 0000112377889999998 46999999999999999876433
Q ss_pred --eEEEeeeccCCceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCC
Q 004410 556 --KFKASAFRVAGSQMFATFTSD--GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 --~~~~~~~~~~~~v~~l~fspd--g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
........|...|++++|+|+ +++|++|+.||.|++||+.+++
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 233334668889999999999 9999999999999999998765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=270.69 Aligned_cols=244 Identities=16% Similarity=0.224 Sum_probs=209.7
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
+..|.++|++++|+|++++||+++.|+.|+|||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 456899999999999999999999999999999876641
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVA 435 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~ 435 (755)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 0144567899999999999999 9999999999999999998865554 4889999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECC----------
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK---------- 500 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~---------- 500 (755)
|+| ++++|++++.|+.|++||+.... .. ....|...|++++|+|++++|++++.||.|++||++
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 99999999999999999998875 22 235678899999999999999999999999999965
Q ss_pred --------CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 501 --------DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 501 --------~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
.+..+.. ...|...|++++|+| ++.+|++++.|+.|++||..+....... ..|...|.+++
T Consensus 183 ~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~ 251 (372)
T 1k8k_C 183 TPWGSKMPFGELMFE--------SSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVT 251 (372)
T ss_dssp BTTBSCCCTTCEEEE--------CCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEE
T ss_pred cccccccchhhheEe--------cCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEE--ccCCCCeEEEE
Confidence 3333322 224677899999999 8899999999999999999876655554 56888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|+|++++|+++ .|+.|++|++.+
T Consensus 252 ~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 252 FITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEETTEEEEEE-TTSSCEEEEEET
T ss_pred EecCCCEEEEE-eCCeEEEEEccC
Confidence 99999988888 999999999988
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=287.15 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=230.9
Q ss_pred cccEEEEEEecCCC-EEEEE----------cCCCcEEEEEccCCeee---eeeecCCCCCceeEEeeCCCCceeEEeecC
Q 004410 284 EGSILTMKFSLDGQ-YLASG----------GEDGTVRVWKVIEHERL---DGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349 (755)
Q Consensus 284 ~~~V~~l~fspdg~-~LaSg----------s~Dg~I~vWdv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (755)
...|.+++|+|+|+ +||+| +.|+.|+||++.++... ..+ .+...+.++.|.++..
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------- 80 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK---------- 80 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS----------
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC----------
Confidence 35688999999997 99999 89999999999887532 222 2333445555544321
Q ss_pred cceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCe------E
Q 004410 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDR------C 421 (755)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~------~ 421 (755)
.++.++.++.+.+|+........+.+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++ .
T Consensus 81 ------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 81 ------IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp ------CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred ------eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 23344556777888765532223467888999999999999998 5 99999999999999999886 3
Q ss_pred EEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE-eccC------CcceEEEEEccCC-CeEEEEe
Q 004410 422 LRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD-YTDI------REIVSAVCYCPDG-KGGIVGT 489 (755)
Q Consensus 422 ~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~------~~~V~~v~~spdg-~~la~gs 489 (755)
...+ .|...|++++|+|..+.+|++++.||.|++||+++++.+. +..+ ...|.+++|+|++ .+|++++
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 3332 4889999999999338999999999999999999988774 3333 6789999999997 6899999
Q ss_pred CCC---cEEEEECCCCe-EeeeeeEEeccccc-CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc
Q 004410 490 MTG---NCRFYDIKDNQ-LYQQNQICLQGKKK-LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV 564 (755)
Q Consensus 490 ~dg---~I~iwD~~~~~-~~~~~~~~~~~~~~-~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 564 (755)
.++ .|++||++++. .... .. .|...|++++|+|.++.+|++++.|+.|++||..+....... ..|
T Consensus 235 ~d~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--~~~ 304 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNANTPLQT--------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--PAR 304 (416)
T ss_dssp CCSSSCCCCEEETTSTTSCSBC--------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--ECS
T ss_pred CCCCCceEEEEeCCCCCCCcEE--------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--cCC
Confidence 998 99999999863 2221 22 467899999999988899999999999999999886555444 678
Q ss_pred CCceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCc
Q 004410 565 AGSQMFATFTSDG-KHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 565 ~~~v~~l~fspdg-~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
...|.+++|+|++ .+|++++.|+.|+||++.+...
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 8999999999999 8999999999999999998763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=274.69 Aligned_cols=252 Identities=12% Similarity=0.171 Sum_probs=204.0
Q ss_pred cceeeecccccEEEEEEecCC-CEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceee
Q 004410 276 TGQEFLAHEGSILTMKFSLDG-QYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDK 354 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg-~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (755)
..+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------- 111 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF--------------------------------- 111 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE---------------------------------
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee---------------------------------
Confidence 334678899999999999999 9999999999999999976643211
Q ss_pred eeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCC
Q 004410 355 TKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNN 429 (755)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~ 429 (755)
....+|...|.+++|+| ++ +|++++.|+.|++||+.+........ |..
T Consensus 112 ---------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 164 (383)
T 3ei3_B 112 ---------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDY 164 (383)
T ss_dssp ---------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSC
T ss_pred ---------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCC
Confidence 12246999999999999 55 99999999999999999644433333 458
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCC----CeE
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKD----NQL 504 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~----~~~ 504 (755)
.|.+++|+| ++++|++|+.|+.|++||++......+..|...|.+++|+|+++ +|++|+.|+.|++||+++ +..
T Consensus 165 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 165 WYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp CEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred CeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 899999999 99999999999999999997666667888999999999999999 899999999999999997 333
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee-----cc----------CCceE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF-----RV----------AGSQM 569 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-----~~----------~~~v~ 569 (755)
... + .+...|++++|+|.++.+|++++.|+.|++||+.+.......... .| ...+.
T Consensus 244 ~~~----~-----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 244 IAE----M-----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp EEE----E-----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred EEE----e-----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 321 1 256799999999977889999999999999998865433222101 11 23455
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.++|+|+|++ +++.|+.|+|||+.+++.
T Consensus 315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 5777777777 788999999999998874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=284.64 Aligned_cols=254 Identities=14% Similarity=0.148 Sum_probs=202.9
Q ss_pred ceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 277 GQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
.+...+|...|+||+|+| ++++||+|+.||.|+|||+.+++..
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------ 155 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------ 155 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence 345677999999999999 5789999999999999998765421
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCc
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNY 430 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~ 430 (755)
.+..+.+|.+.|++|+|+| ++ +|++++.|++|++||++++....... +...
T Consensus 156 ------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 156 ------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp ------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred ------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 1233568999999999998 45 99999999999999998776554443 4456
Q ss_pred EEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 431 VTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|++||+++.+......
T Consensus 212 ~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 212 FCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp CCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred EEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 88999999 99999999999999999998877777888999999999999886 67789999999999999876443211
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccC------CceEEEEEecCCCEEEEE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVA------GSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~------~~v~~l~fspdg~~L~sg 583 (755)
....|...|++++|+| ++.+|++++.|+.|+|||..+....... ..|. ..+..+.|+|++.+++++
T Consensus 291 -----~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 291 -----YSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGL--IPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp -----BCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEE--CCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred -----EeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEE--ecccccccccceeEEEEEcCCCCEEEEE
Confidence 1234678999999999 8999999999999999998876544433 2221 123445677777777666
Q ss_pred e------------CCCcEEEEEcCCCCc
Q 004410 584 S------------EDSNIYIWNYSNQDK 599 (755)
Q Consensus 584 s------------~Dg~I~iWd~~~~~~ 599 (755)
+ .++.|++||..+++.
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 4 345799999998873
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=272.56 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=212.4
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGE 304 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~ 304 (755)
....+.+|...+.+++|+|++++||+|+.||.|+||++.... ....+.+.+|.+.|++++|+|+ +++|++|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 345678899999999999999999999999999999976322 2234567899999999999987 999999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
||.|+|||+.+++.. .+..+
T Consensus 78 dg~v~iwd~~~~~~~------------------------------------------------------------~~~~~ 97 (379)
T 3jrp_A 78 DGKVLIWKEENGRWS------------------------------------------------------------QIAVH 97 (379)
T ss_dssp TSCEEEEEEETTEEE------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEcCCCcee------------------------------------------------------------Eeeee
Confidence 999999999776421 13445
Q ss_pred cCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeE---EEEEecCCcEEEEEEeeC------------CCCEEEE
Q 004410 385 QGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPV------------DDNYFIS 446 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~h~~~V~~i~fsp~------------d~~~l~s 446 (755)
.+|...|.+++|+|+ + +|++++.|+.|++||+.++.. .....|...|++++|+|. ++.+|++
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 177 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEE
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE
Confidence 679999999999998 7 999999999999999988733 233359999999999994 5899999
Q ss_pred EeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 447 GSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
++.||.|++||++++. .. .+..|...|++++|+|+ +++|++++.||.|++||+.++........ .....
T Consensus 178 ~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~ 254 (379)
T 3jrp_A 178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL---LKEEK 254 (379)
T ss_dssp EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE---SSSSC
T ss_pred EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee---ecccc
Confidence 9999999999998653 22 56678899999999999 89999999999999999998642211111 11233
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+...|++++|+| ++.+|++++.||.|++|+...
T Consensus 255 ~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 255 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEE
T ss_pred CCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCC
Confidence 667899999999 889999999999999999764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=279.16 Aligned_cols=302 Identities=19% Similarity=0.262 Sum_probs=235.0
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe--cCCCEEEEEcCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS--LDGQYLASGGED 305 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs--pdg~~LaSgs~D 305 (755)
+..+.+|...+.+++|+|++ +|++|+.||+|+||++.... ..+.+.+|.+.|.+++|+ +++.+|++|+.|
T Consensus 155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d 226 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226 (464)
T ss_dssp EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEEESSSCEEEEEEETT
T ss_pred EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-------EEEEECCCCCccEEEEEecCCCCCEEEEEcCC
Confidence 34456778889999999998 99999999999999987543 335678999999999999 578999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++||+.++............. . ....+. .....+..+.
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~---~~~~~~~~~~ 267 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYP-L-----------------------------------VFHTPE---ENPYFVGVLR 267 (464)
T ss_dssp SCEEEEECCCCCCC------CCSS-E-----------------------------------EESCGG---GCTTEEEEEC
T ss_pred CcEEEeeCCCCcccccccccCCcc-e-----------------------------------EeeccC---CCeEEEEEcc
Confidence 999999998776443221111000 0 000000 0011245678
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+|...|.++. +++ +|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++|+.||.|++||+++++.
T Consensus 268 ~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 268 GHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp CCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE
T ss_pred CccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE
Confidence 8999998884 455 99999999999999999999998885 999999999999 999999999999999999999887
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .+..|...|.+++|+ +++|++++.||.|++||+.++...... .+...+..++|+| ++.++++++ |
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~l~~~~-d 411 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------HHTNLSAITTFYV-SDNILVSGS-E 411 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------ECTTCCCEEEEEE-CSSEEEEEE-T
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------cCCCCccEEEEEe-CCCEEEEec-C
Confidence 7 577899999999997 589999999999999999987654321 1445677889999 888999988 9
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+.|++||..+....... ...+...|.+++|+ +..++++++.||.+.+|-+
T Consensus 412 g~i~iwd~~~g~~~~~~-~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHAN-ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TEEEEEETTTCCEEESC-TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCCCcEEehh-hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999999886544321 25678899999997 4455666667776665543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=267.73 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=213.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--CCCEEEEEcCCCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--DGQYLASGGEDGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--dg~~LaSgs~Dg~ 307 (755)
.+.+|.+.+.+++|+|++++||+|+.||.|+||++....... .....+.+|.+.|.+++|+| |+++|++|+.||.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW---ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE---EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc---eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 356788899999999999999999999999999987543221 23456789999999999999 6999999999999
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|+|||+.++...... ...+++..+.+|
T Consensus 83 v~vwd~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~ 109 (351)
T 3f3f_A 83 VKLWEEDPDQEECSG-----------------------------------------------------RRWNKLCTLNDS 109 (351)
T ss_dssp EEEEEECTTSCTTSS-----------------------------------------------------CSEEEEEEECCC
T ss_pred EEEEecCCCcccccc-----------------------------------------------------cCcceeeeeccc
Confidence 999999776421000 000234567789
Q ss_pred CCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeEEEEE--------------ecCCcEEEEEEeeC--CCCEEEEEe
Q 004410 388 SSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRCLRVF--------------SHNNYVTSVAFNPV--DDNYFISGS 448 (755)
Q Consensus 388 ~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~~~~~--------------~h~~~V~~i~fsp~--d~~~l~sgs 448 (755)
...|.+++|+|+ + +|++++.|+.|++||+.+++.+..+ .|...+.+++|+|. ++.+|++++
T Consensus 110 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 110 KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 999999999998 7 8999999999999999877654332 37788999999993 289999999
Q ss_pred CCCcEEEEEcCCCeE---EEeccCCcceEEEEEccCC----CeEEEEeCCCcEEEEECCCCeEeeee-------------
Q 004410 449 IDGKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDG----KGGIVGTMTGNCRFYDIKDNQLYQQN------------- 508 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg----~~la~gs~dg~I~iwD~~~~~~~~~~------------- 508 (755)
.|+.+.+|+...++. ..+..|...|++++|+|++ ++|++|+.||.|++||++.+......
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 999999998888764 2566788999999999998 89999999999999999865221100
Q ss_pred -------------------------eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 509 -------------------------QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 509 -------------------------~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
..........|...|++++|+| ++.+|++++.|+.|+||+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcC
Confidence 0011122345778999999999 8899999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=290.26 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=168.0
Q ss_pred EecCCCCCEEEEEEcCC------C-eEEEEeCCCcEEEEeCCCCeE-----------EEEE-ecCCcEEEEEEeeCCCCE
Q 004410 383 EFQGHSSEVLDLSWSKN------G-FLLSSSADKTVRLWQVGIDRC-----------LRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~------~-~L~s~s~Dg~V~iWdl~s~~~-----------~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
.+.+|.+.|.+++|+|+ + +|++++.||+|+|||+..+.+ ...+ .|...|++++|+| + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 35568889999999996 3 899999999999999987642 1234 4889999999998 4 58
Q ss_pred EEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEE--EEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 444 FISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAV--CYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v--~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
|++|+.||+|++||++++.. ..+..|...|++| +|+|+| .+|++|+.|++|+|||+++++...... ++.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~----~~~-- 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV----SRF-- 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE----EEC--
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc----ccc--
Confidence 99999999999999987632 3467899999999 578888 899999999999999999876543322 111
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
....|.+++|+| ++..+++++.|++|++||.......... .+|...|++++|+|+|++|++|+.||+|+|||+...
T Consensus 354 ~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEE--EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceee--ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 113478899999 7888999999999999999876544443 569999999999999999999999999999998643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=295.83 Aligned_cols=332 Identities=17% Similarity=0.215 Sum_probs=256.6
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
..+..|...+.+++|+|++++|++|+.||.|+||++..+. ..+.+.+|.+.|++++|+|++++|++++.||.|
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEE
Confidence 3455667788899999999999999999999999987543 335678899999999999999999999999999
Q ss_pred EEEEccCC-eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEH-ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
++|++.++ .....+..+...+.++.|.+... ...+.++.++.+.+|+... ..+...+..|
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------------~~l~~~~~dg~v~vwd~~~----~~~~~~~~~~ 182 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDP---------------STFASGCLDRTVKVWSLGQ----STPNFTLTTG 182 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSSCEEEEEEETTEE---------------EEEEEEETTSEEEEEETTC----SSCSEEEECC
T ss_pred EEEECCCCceEEEEEcCCCCcEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCC----CcceeEEecC
Confidence 99999887 55566666666666666655221 2334456677777776543 2334455544
Q ss_pred -CCCEEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 388 -SSEVLDLSWSK--NG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 388 -~~~V~~l~~s~--~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
...|.+++|+| ++ .|++++.|+.|++||+.+++++..+. |...|++++|+| ++++|++++.||.|++||+.+++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 48999999999 77 99999999999999999999988886 899999999999 99999999999999999999987
Q ss_pred EE-EeccCCcceEEEEEccCCCe-EEEEeCCCcEEEEECCCCeEeeeee----EEe----------------c-------
Q 004410 463 VV-DYTDIREIVSAVCYCPDGKG-GIVGTMTGNCRFYDIKDNQLYQQNQ----ICL----------------Q------- 513 (755)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~-la~gs~dg~I~iwD~~~~~~~~~~~----~~~----------------~------- 513 (755)
.+ .+..+...+.+++|+|+|.. +++++.++.+.+|++.......... ... .
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 76 56677889999999999874 3555557788999876543211110 000 0
Q ss_pred --------ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 514 --------GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 514 --------~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
.....+...+.+++|+| +++++++++ ++.+.+|+....... +.+.+.+++|+|+|++|++++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-------~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-------AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-------EEEECSEEEECTTSSCEEEECT
T ss_pred CccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-------CCCceEEEEEeCCCCeEEEEeC
Confidence 00112344678999999 889999988 899999997643322 2345678899999999999999
Q ss_pred CCcEEEEEcCC
Q 004410 586 DSNIYIWNYSN 596 (755)
Q Consensus 586 Dg~I~iWd~~~ 596 (755)
||.|++|+.-.
T Consensus 413 ~g~v~l~~~~~ 423 (814)
T 3mkq_A 413 TGQIKYYKNFK 423 (814)
T ss_dssp TCCEEEEETTE
T ss_pred CCcEEEEECCC
Confidence 99999997543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=270.60 Aligned_cols=255 Identities=12% Similarity=0.175 Sum_probs=210.4
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.+.+|.+.|++|+|+| ++|++|+.||.|+||++.+++....
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~----------------------------------- 51 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP----------------------------------- 51 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----------------------------------
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----------------------------------
Confidence 356789999999999998 7999999999999999976642100
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----C----eEEEEeCCCcEEEEeCCCCeE-----EE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----G----FLLSSSADKTVRLWQVGIDRC-----LR 423 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~----~L~s~s~Dg~V~iWdl~s~~~-----~~ 423 (755)
...+..+.+|...|.+++|+++ + +|++++.|+.|++||+.+++. +.
T Consensus 52 ---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 110 (397)
T 1sq9_A 52 ---------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE 110 (397)
T ss_dssp ---------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE
T ss_pred ---------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce
Confidence 1224566789999999999998 5 889999999999999998875 66
Q ss_pred EEe-c-----CCcEEEEEEe----eCCCCE-EEEEeCCCcEEEEEcCC------CeEE------Ee-------ccCCcce
Q 004410 424 VFS-H-----NNYVTSVAFN----PVDDNY-FISGSIDGKVRIWEVRR------CQVV------DY-------TDIREIV 473 (755)
Q Consensus 424 ~~~-h-----~~~V~~i~fs----p~d~~~-l~sgs~Dg~V~iwdl~~------~~~~------~~-------~~~~~~V 473 (755)
.+. | ...|.+++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|
T Consensus 111 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 111 KLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp EECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred eecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 664 6 4999999999 9 8999 99999999999999987 4322 33 4478889
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCC---CCCeEEEEEcCCCCCEEEEEECC---CcEEE
Q 004410 474 SAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP---GKRITGFQFSPSDPSKVIVTSAD---SLVRV 547 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~---~~~I~~v~fsp~d~~~l~s~s~D---g~I~i 547 (755)
++++|+|++ .|++++.||.|++||+++++.+..+.. ...| ...|++++|+| ++.+|++++.| +.|++
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i 262 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-----QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITL 262 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC-----CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEE
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec-----cccccccCCccceEEECC-CCCEEEEEecCCCCceEEE
Confidence 999999999 999999999999999999877654221 0114 67899999999 89999999999 99999
Q ss_pred EECCcceeeEEEeeec-------------cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 548 LCGENVVGKFKASAFR-------------VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~-------------~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
||..+....... .. |...|.+++|+|++++|++++.||.|+|||+.+++.
T Consensus 263 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 263 YETEFGERIGSL--SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EETTTCCEEEEE--CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EECCCCccccee--ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 999876555444 44 889999999999999999999999999999988763
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=265.17 Aligned_cols=250 Identities=11% Similarity=0.201 Sum_probs=202.9
Q ss_pred eeeecccccEEEEEEecCCCE-EEEEcC---CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 278 QEFLAHEGSILTMKFSLDGQY-LASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~-LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+.+.+|.+.|.+++|+|++.. |++++. ||.|+||++.+++...
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~--------------------------------- 58 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL--------------------------------- 58 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE---------------------------------
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc---------------------------------
Confidence 346789999999999999965 456665 9999999998765321
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCe-EEEEE-ec
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN---G-FLLSSSADKTVRLWQVGIDR-CLRVF-SH 427 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~---~-~L~s~s~Dg~V~iWdl~s~~-~~~~~-~h 427 (755)
....+|...|.+++|+|+ + +|++++.|+.|++||+.+++ ++..+ .|
T Consensus 59 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 110 (357)
T 3i2n_A 59 ----------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGH 110 (357)
T ss_dssp ----------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ----------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEec
Confidence 112358899999999998 5 99999999999999999887 77776 49
Q ss_pred CCcEEEEEE------eeCCCCEEEEEeCCCcEEEEEcCCCe-EE-EeccCC----cceEEEE----EccCCCeEEEEeCC
Q 004410 428 NNYVTSVAF------NPVDDNYFISGSIDGKVRIWEVRRCQ-VV-DYTDIR----EIVSAVC----YCPDGKGGIVGTMT 491 (755)
Q Consensus 428 ~~~V~~i~f------sp~d~~~l~sgs~Dg~V~iwdl~~~~-~~-~~~~~~----~~V~~v~----~spdg~~la~gs~d 491 (755)
...|.+++| +| ++++|++++.||.|++||+.++. .+ .+..+. ..+.+++ |+|++++|++++.|
T Consensus 111 ~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp SSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred ccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 999999965 56 89999999999999999999875 33 343333 3788888 78899999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--CCCEEEEEECCCcEEEEECCcceeeEEE---eeeccCC
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--DPSKVIVTSADSLVRVLCGENVVGKFKA---SAFRVAG 566 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~ 566 (755)
|.|++||+++++.... ..+...|++++|+|. ++.++++++.|+.|++||..+....... ....|..
T Consensus 190 ~~i~i~d~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 190 GDIKLFDLRNMALRWE---------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp SEEEEEETTTTEEEEE---------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred CeEEEEECccCceeee---------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 9999999999886432 224578999999996 6789999999999999998764332221 1237899
Q ss_pred ceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCC
Q 004410 567 SQMFATFTSDGK-HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 567 ~v~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.|++++|+|+++ +|++++.||.|++||+.++.
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999999999999 89999999999999998765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=271.73 Aligned_cols=260 Identities=19% Similarity=0.276 Sum_probs=210.2
Q ss_pred eeeecccccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.+......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------------------------------- 166 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------------------------------- 166 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------
Confidence 345689999999999997 78999999999999999965321000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeE-------EEEE-e
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRC-------LRVF-S 426 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~-------~~~~-~ 426 (755)
......++..+.+|...|.+++|+|++ +|++++.||+|++||+..+.. ...+ .
T Consensus 167 -----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 229 (430)
T 2xyi_A 167 -----------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG 229 (430)
T ss_dssp -----------------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred -----------------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence 000023466788999999999999987 899999999999999987322 2333 5
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCC
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~ 501 (755)
|...|.+++|+|.++.+|++++.||.|++||+++. ....+..|...|++++|+|++. .|++|+.||.|++||+++
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 89999999999977889999999999999999976 2335668889999999999987 688999999999999997
Q ss_pred Ce-EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce------------eeEEEeeeccCCce
Q 004410 502 NQ-LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV------------GKFKASAFRVAGSQ 568 (755)
Q Consensus 502 ~~-~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~------------~~~~~~~~~~~~~v 568 (755)
.. .+.. ...|...|++++|+|.+..+|++++.|+.|+|||+.... ........+|...|
T Consensus 310 ~~~~~~~--------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 381 (430)
T 2xyi_A 310 LKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381 (430)
T ss_dssp TTSCSEE--------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE
T ss_pred CCCCeEE--------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc
Confidence 43 2221 224678999999999555789999999999999987622 12333336788899
Q ss_pred EEEEEecCCC-EEEEEeCCCcEEEEEcCCC
Q 004410 569 MFATFTSDGK-HVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 569 ~~l~fspdg~-~L~sgs~Dg~I~iWd~~~~ 597 (755)
.+++|+|+++ +|++++.||.|+||++...
T Consensus 382 ~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred eEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999999 9999999999999999754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=299.06 Aligned_cols=256 Identities=19% Similarity=0.283 Sum_probs=210.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|++++|+|+|++|++|+.||.|+||++..+..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 45789999999999999999999999999999999864321
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYV 431 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V 431 (755)
..+..+.+|.+.|.+++|+++ + +|++++.||+|++||+.+++ .+..+ .|...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 124567789999999999987 7 99999999999999999986 44444 499999
Q ss_pred EEEEEeeCC--CCEEEEEeCCCcEEEEEcCCC---eEEEeccCCcceEEEEEcc-------------CCCeEEEEeCCCc
Q 004410 432 TSVAFNPVD--DNYFISGSIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCP-------------DGKGGIVGTMTGN 493 (755)
Q Consensus 432 ~~i~fsp~d--~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~sp-------------dg~~la~gs~dg~ 493 (755)
++++|+| + +++|++|+.||.|++||++++ .......|...|.+++|+| ++..|++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999887 3345678899999999999 5999999999999
Q ss_pred EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeE---EEeeeccCCce
Q 004410 494 CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKF---KASAFRVAGSQ 568 (755)
Q Consensus 494 I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~~~~~v 568 (755)
|++||++++........ ....|...|++++|+|++ +.++++++.||.|++||........ ......|...|
T Consensus 182 I~iwd~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccceeee----eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987743322111 233567899999999933 8999999999999999987743211 11124478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 569 MFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 569 ~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++|+|+|++|++++.||.|++|++..+.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999999999999998654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=275.95 Aligned_cols=260 Identities=17% Similarity=0.300 Sum_probs=198.4
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++....... .
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~---~--------------------------------- 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR---G--------------------------------- 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC---C---------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc---c---------------------------------
Confidence 4789999999999999999999999999999987652110000 0
Q ss_pred CCceEEEeCCcceeccCccceEecCCC------------CCEEEEEEcCCC---eEEEEeCCCcEEEEeCCCCeEE----
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS------------SEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCL---- 422 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~V~~l~~s~~~---~L~s~s~Dg~V~iWdl~s~~~~---- 422 (755)
..+.+..+.+|. ..|.+++|+|++ .|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 001244566787 889999999985 7999999999999999765442
Q ss_pred -----------------------------------EEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeEE
Q 004410 423 -----------------------------------RVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQVV 464 (755)
Q Consensus 423 -----------------------------------~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~~ 464 (755)
+.+ .|...|++++|+| ++++|++| .|+.|++||+++ .+.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 4999999999999 99999999 799999999994 4444
Q ss_pred E--------eccCCcceEEEEEccCC-CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc--------cCCCCCeEEEE
Q 004410 465 D--------YTDIREIVSAVCYCPDG-KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK--------KLPGKRITGFQ 527 (755)
Q Consensus 465 ~--------~~~~~~~V~~v~~spdg-~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~--------~~~~~~I~~v~ 527 (755)
. +..|...|++++|+|++ ++|++|+.||.|++||++++.........+..+. ..+...|++++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 3 45788899999999998 9999999999999999998875211111111111 01123899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCc-ceeeEEEeeeccCC---------------ceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGEN-VVGKFKASAFRVAG---------------SQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~---------------~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
|+| ++.+|++++. +.|+|||... ....... ..|.. .+..++|+|++++|++|+.||.|+|
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETY--QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCE--ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCcccccee--eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEE
Confidence 999 8999999999 9999999875 3322222 22321 1334999999999999999999999
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
||+.+++
T Consensus 369 wd~~~~~ 375 (447)
T 3dw8_B 369 FDRNTKR 375 (447)
T ss_dssp EETTTCC
T ss_pred EEcCCCc
Confidence 9998875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=251.83 Aligned_cols=244 Identities=16% Similarity=0.195 Sum_probs=203.9
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+...+++.+|.+.|++++| |++++|++|+.||.|+|||+.++..
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~----------------------------------- 51 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL----------------------------------- 51 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------------------------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------------------------
Confidence 3455678999999999999 9999999999999999999876543
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---eEEEEE-ecC
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID---RCLRVF-SHN 428 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~---~~~~~~-~h~ 428 (755)
...+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+ .|.
T Consensus 52 ---------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~ 104 (313)
T 3odt_A 52 ---------------------------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ 104 (313)
T ss_dssp ---------------------------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS
T ss_pred ---------------------------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc
Confidence 23345688999999999999 9999999999999998654 444444 499
Q ss_pred CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeee
Q 004410 429 NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 429 ~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~ 507 (755)
..|.++.|+ +++|++++.||.|++|| .......+..|...+.+++|.| +++.|++++.||.|++||.. .....
T Consensus 105 ~~i~~~~~~---~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~ 178 (313)
T 3odt_A 105 GNVCSLSFQ---DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKT 178 (313)
T ss_dssp SCEEEEEEE---TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEE
T ss_pred cCEEEEEec---CCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEE
Confidence 999999994 57999999999999999 3333446778899999999999 99999999999999999943 22221
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
....+...|++++|+| ++. +++++.|+.|++||..+....... ..|...|++++|+|++ +|++++.||
T Consensus 179 -------~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~l~~~~~dg 246 (313)
T 3odt_A 179 -------FSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTY--EGHESFVYCIKLLPNG-DIVSCGEDR 246 (313)
T ss_dssp -------ECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTS-CEEEEETTS
T ss_pred -------EeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhh--hcCCceEEEEEEecCC-CEEEEecCC
Confidence 1223678899999999 666 999999999999999876655554 6788999999999999 699999999
Q ss_pred cEEEEEcCCCC
Q 004410 588 NIYIWNYSNQD 598 (755)
Q Consensus 588 ~I~iWd~~~~~ 598 (755)
.|++||+.+++
T Consensus 247 ~v~iwd~~~~~ 257 (313)
T 3odt_A 247 TVRIWSKENGS 257 (313)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEEECCCCc
Confidence 99999999886
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=263.44 Aligned_cols=249 Identities=15% Similarity=0.126 Sum_probs=206.3
Q ss_pred eecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 280 l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
..+|.+.|++++|+|++++|++++.||.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 4579999999999999999999999999999998765310
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeC-CCCeEEEEEe--cCCcEEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQV-GIDRCLRVFS--HNNYVTSV 434 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl-~s~~~~~~~~--h~~~V~~i 434 (755)
.+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|+++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 0122344789999999999987 4899999999999999 8888766667 99999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEEcCC---------CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC-CeE
Q 004410 435 AFNPVDDNYFISGSIDGKVRIWEVRR---------CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD-NQL 504 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg~V~iwdl~~---------~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~-~~~ 504 (755)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.+|.|++||+++ +..
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 88999999999999999987 6666555588999999999987 99999999999999998 543
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc------eeeEEEeeecc---------CCceE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV------VGKFKASAFRV---------AGSQM 569 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~------~~~~~~~~~~~---------~~~v~ 569 (755)
.... ....+...|.+++|+|.++.++++++.|+.|++|+.... ...... ..| ...|.
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--RCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--ECCCCCTTCCSSCCCEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee--ecccccccccccceeEE
Confidence 2111 122356789999999844689999999999999998764 333333 334 34999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 570 FATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+++|+|++++|++++.||.|++||+.+++.
T Consensus 256 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 999999999999999999999999998874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-28 Score=269.73 Aligned_cols=297 Identities=12% Similarity=0.027 Sum_probs=222.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcc--cccccc--------------------------------------
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR--ELSSLY-------------------------------------- 275 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~--~~~~~~-------------------------------------- 275 (755)
..+.+++|+|+|++|+++ .++.|++|++..+.. .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 456789999999966655 578999999765540 011000
Q ss_pred ----------cceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEcc--CCeeeeeeecCCCCCceeEEeeCCCCce
Q 004410 276 ----------TGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVI--EHERLDGFDVQDTDPSCLYFTINHLSQL 342 (755)
Q Consensus 276 ----------~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (755)
......+|.+.|++++|+|++++| |+++.||.|+||++. +++.+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------- 144 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------- 144 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-------------------
Confidence 011123566789999999999996 999999999999997 554322111
Q ss_pred eEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeE
Q 004410 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRC 421 (755)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~ 421 (755)
...|...|.+++|+|++ +|++++.++.|++|++.+++.
T Consensus 145 -----------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 145 -----------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp -----------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred -----------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence 12467889999999999 999999999999999988775
Q ss_pred EE----EE-ecCCcEEEEEEeeCC---CCEEEEEeCCCcEEEEEcCCCeEEE--eccCCcceEEEEEccCCCeEEEEeCC
Q 004410 422 LR----VF-SHNNYVTSVAFNPVD---DNYFISGSIDGKVRIWEVRRCQVVD--YTDIREIVSAVCYCPDGKGGIVGTMT 491 (755)
Q Consensus 422 ~~----~~-~h~~~V~~i~fsp~d---~~~l~sgs~Dg~V~iwdl~~~~~~~--~~~~~~~V~~v~~spdg~~la~gs~d 491 (755)
.. .+ .|...|++++|+| + +++|++|+.|+.|++||+++++.+. ...|...|++++|+ ++++|++|+.|
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 53 33 5999999999999 8 8899999999999999999887663 45788999999999 99999999999
Q ss_pred CcEEEEECCCCeEeeeeeEEec-----------------ccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEEC--C
Q 004410 492 GNCRFYDIKDNQLYQQNQICLQ-----------------GKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCG--E 551 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~~~-----------------~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~--~ 551 (755)
+.|++||+.+++.+........ .........|..++|+| ++.+|++++ .|+.|+||++ .
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~ 340 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEK 340 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccC
Confidence 9999999999987665432100 00002345799999999 888999998 8999999999 3
Q ss_pred cc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 552 NV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSE------DSNIYIWNYSNQ 597 (755)
Q Consensus 552 ~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~------Dg~I~iWd~~~~ 597 (755)
.. ..........+ ..|.+++|+|++.++++++. +..|.||.+...
T Consensus 341 ~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 341 QKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp STTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 32 11222222344 88999999996544444443 556899987654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=265.35 Aligned_cols=282 Identities=13% Similarity=0.128 Sum_probs=211.8
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTV 308 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I 308 (755)
....|.+.+.+++|+|||++||+|+.++ ++||+....... +..+...+..+++.++++++ ++++.|++|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 4466788999999999999999998775 789997643221 11222358888999998887 467788999
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
+|||+.+++.+.. +. |.
T Consensus 84 ~iWd~~~~~~~~~--------------------------------------------------------------~~-~~ 100 (355)
T 3vu4_A 84 HIWDDVKKQDVSR--------------------------------------------------------------IK-VD 100 (355)
T ss_dssp EEEETTTTEEEEE--------------------------------------------------------------EE-CS
T ss_pred EEEECCCCcEEEE--------------------------------------------------------------EE-CC
Confidence 9999988765432 22 45
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCC-eEEEEEecCCcEEEEEEeeCCCCEEEE--EeCCCcEEEEEcCCCe---
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFSHNNYVTSVAFNPVDDNYFIS--GSIDGKVRIWEVRRCQ--- 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~-~~~~~~~h~~~V~~i~fsp~d~~~l~s--gs~Dg~V~iwdl~~~~--- 462 (755)
..|.+++|+++..++ ..|+.|++||+.++ +.+..+.. ....+++++ .+++. |+.||.|++||+.++.
T Consensus 101 ~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~ 173 (355)
T 3vu4_A 101 APVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR--FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSAT 173 (355)
T ss_dssp SCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE--EEEEEEEET---TEEEEEESSCTTCEEEEECCC-----
T ss_pred CceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc--CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccc
Confidence 689999999875333 24789999999988 66655544 445566666 56665 6899999999999865
Q ss_pred --------------EEEeccCCcceEEEEEccCCCeEEEEeCCCc-EEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 463 --------------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 463 --------------~~~~~~~~~~V~~v~~spdg~~la~gs~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
...+..|...|++++|+|+|++|++|+.||+ |++||+++++.+..+. ...|...|++++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~------~g~h~~~v~~~~ 247 (355)
T 3vu4_A 174 TQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR------RGLDRADVVDMK 247 (355)
T ss_dssp -------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE------CTTCCSCEEEEE
T ss_pred cccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCCCCCcEEEEE
Confidence 4567889999999999999999999999998 9999999988765421 012678999999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEe---------------------eeccCCceEEEEEecCCCEEEEEeCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS---------------------AFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------------------~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
|+| ++.+|++++.|++|+|||+.......... ..........++|++||++|++++.|
T Consensus 248 ~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 248 WST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp ECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred ECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 999 89999999999999999986532110000 00112234678999999999999999
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.+++|++..++
T Consensus 327 g~~~~~~~~~~~ 338 (355)
T 3vu4_A 327 RMIETFKVVFDD 338 (355)
T ss_dssp TEEEEEEEEEET
T ss_pred CeEEEEEEEcCC
Confidence 999999997665
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=264.67 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=231.3
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
.+.+++|+|++.++++++.++.|++|+....... .......+.+|.+.|.+++|+|+++++++++.|+.|++||+.++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3557999998888888888999999998765432 11111245689999999999999999999999999999999776
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.+ ..+..|...+.+++|
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 202 AYK--------------------------------------------------------------ATVDLTGKWSKILLY 219 (433)
T ss_dssp CEE--------------------------------------------------------------EEEECSSSSEEEEEE
T ss_pred eEE--------------------------------------------------------------EEEcCCCCCeeEEEE
Confidence 532 334467888999999
Q ss_pred cCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe--------CCCcEEEEEcCCCeEEEe
Q 004410 397 SKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS--------IDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 397 s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs--------~Dg~V~iwdl~~~~~~~~ 466 (755)
+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++ .|+.|++||+.+++.+..
T Consensus 220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 9999 55 455589999999999999999888778899999999 898998888 588999999999988877
Q ss_pred ccCCcceEEEEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC----
Q 004410 467 TDIREIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA---- 541 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~---- 541 (755)
..+...+.+++|+|+++.+ ++++.++.|++||+.+++...... +...+.+++|+| ++.++++++.
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---------VFDKPNTIALSP-DGKYLYVSCRGPNH 368 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------CSSSEEEEEECT-TSSEEEEEECCCCC
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---------CCCCCCeEEEcC-CCCEEEEEecCCCc
Confidence 7777789999999999765 556889999999999888764321 346789999999 8888888776
Q ss_pred -----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 004410 542 -----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSN 596 (755)
Q Consensus 542 -----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~ 596 (755)
||.|++||..+....... .....+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFW---EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccccceEEEEEECCCCcEEEEe---cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 579999999876544443 23567899999999999998875 99999999863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-28 Score=260.88 Aligned_cols=252 Identities=17% Similarity=0.278 Sum_probs=203.4
Q ss_pred cceeeecccccEEEEEEecC---CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcce
Q 004410 276 TGQEFLAHEGSILTMKFSLD---GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKI 352 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspd---g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (755)
..+.+.+|.+.|++|+|+|+ |++|++|+.||.|+|||+.+...
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------------------- 76 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------------------- 76 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------------------------------
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------------------------------
Confidence 44567899999999999999 69999999999999999976221
Q ss_pred eeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcE
Q 004410 353 DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431 (755)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V 431 (755)
.....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++....|...|
T Consensus 77 --------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v 130 (368)
T 3mmy_A 77 --------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPV 130 (368)
T ss_dssp --------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred --------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCce
Confidence 0124466799999999999999 9999999999999999999999988999999
Q ss_pred EEEEE--eeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 432 TSVAF--NPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 432 ~~i~f--sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
++++| +| ++++|++++.||.|++||+++++.+........+.++.+. +..+++++.++.+++|++.........
T Consensus 131 ~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~- 206 (368)
T 3mmy_A 131 KTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRR- 206 (368)
T ss_dssp EEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEE-
T ss_pred EEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhh-
Confidence 99999 77 8889999999999999999998877655555667666665 458999999999999999876543221
Q ss_pred EEecccccCCCCCeEEEEEcCCCCC----EEEEEECCCcEEEEECCcce---eeEEEeeeccCC------------ceEE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPS----KVIVTSADSLVRVLCGENVV---GKFKASAFRVAG------------SQMF 570 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~----~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~------------~v~~ 570 (755)
........+..+.+.+ +.. .+++++.|+.|++|+..... ..... ..|.. .|++
T Consensus 207 -----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~ 278 (368)
T 3mmy_A 207 -----IESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF--KCHRSNGTNTSAPQDIYAVNG 278 (368)
T ss_dssp -----CCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE--ECSEEC----CCCEEECCEEE
T ss_pred -----ccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceee--eeeecccccccccccccceEE
Confidence 1222334556666655 333 39999999999999988652 22222 33333 7999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++|+|++++|++++.||.|+|||+.+++.
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 99999999999999999999999998763
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=267.47 Aligned_cols=246 Identities=20% Similarity=0.283 Sum_probs=208.5
Q ss_pred eeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 234 IIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
|...+.+++|+|++++|++|+.||.|+||++.... ..+.+.+|.+.|.+++| ++++|++++.||.|++||+
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence 34567789999999999999999999999986543 33567799999999999 4679999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.... ..+..+.+|...|.+
T Consensus 204 ~~~~-------------------------------------------------------------~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 204 RIAN-------------------------------------------------------------HQIGTLQGHSSEVCG 222 (401)
T ss_dssp TSSS-------------------------------------------------------------CEEEEEECCSSCEEE
T ss_pred ccCc-------------------------------------------------------------ceeeEEcCCCCCeeE
Confidence 6432 123456789999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEe--CCCcEEEEEcCCCeEEEeccC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs--~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
++|+|++ +|++++.|+.|++||+.+++++..+ .|...|.+++|+|....++++++ .|+.|++||+.+++.+....+
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~ 302 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 9999999 9999999999999999999998888 49999999999995556777765 799999999999998877778
Q ss_pred CcceEEEEEccCCCeEEEE--eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEE
Q 004410 470 REIVSAVCYCPDGKGGIVG--TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~g--s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~i 547 (755)
...|.+++|+|+++.|+++ +.||.|++||+.++....... ...|...|++++|+| ++.+|++++.|+.|++
T Consensus 303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------IPAHDTRVLYSALSP-DGRILSTAASDENLKF 375 (401)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------EECCSSCCCEEEECT-TSSEEEEECTTSEEEE
T ss_pred CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------ecCCCCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 8899999999999999994 489999999999876654322 234678899999999 8999999999999999
Q ss_pred EECCcceee
Q 004410 548 LCGENVVGK 556 (755)
Q Consensus 548 wd~~~~~~~ 556 (755)
|++.+....
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 998875443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-29 Score=274.64 Aligned_cols=262 Identities=10% Similarity=0.061 Sum_probs=208.5
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.+.+++|+|||+++|+++.|++|+ +... .+.+.+|...|++++|+|+| .++.+.+|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~----------~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKY----------AKDINCNSKNLFHVKEFPLE-------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECC----------CSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccc----------cceecCCCccEEEEEECCCC-------CcceEEEEeCC
Confidence 46788899999999999999999999 5221 13457899999999999999 45555555432
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
... +.. ..|...|.++
T Consensus 76 ~~~---------------------------------------------------------------~~~-~~~~~~V~~v 91 (588)
T 2j04_A 76 QNG---------------------------------------------------------------LLN-SQPVCYPRVC 91 (588)
T ss_dssp SSC---------------------------------------------------------------SST-TSCSCCEEEE
T ss_pred Cce---------------------------------------------------------------Eee-cCCCCcEEEE
Confidence 111 011 1457889999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCC-----cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE-----
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNN-----YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV----- 463 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~-----~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~----- 463 (755)
+|+|+| .|++++.||+|++||..+ ++..+.|.. .|.+++|+| ++++|++|+.||+|+|||+.++..
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 999999 999999999999999654 666666544 499999999 999999999999999999998742
Q ss_pred ---EEe----ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 464 ---VDY----TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 464 ---~~~----~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
..+ .+|...|.+++|+||| +++++.|+.|++||+.++....... .+ ...|...|.+++|+ +..|
T Consensus 169 i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~-tL---~~~h~~~V~svaFs---g~~L 239 (588)
T 2j04_A 169 YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR-MI---QNASRRKITDLKIV---DYKV 239 (588)
T ss_dssp EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE-EE---ECCCSSCCCCEEEE---TTEE
T ss_pred eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee-ee---cccccCcEEEEEEE---CCEE
Confidence 233 5677899999999999 8889999999999998877321000 01 12356789999998 3788
Q ss_pred EEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEE--ecCCCEEEEEeCCCcEEEEEcC
Q 004410 537 IVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATF--TSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f--spdg~~L~sgs~Dg~I~iWd~~ 595 (755)
++++ ++.|++||..+....... .+|...+..++| +||+..|+++++||. ++|.++
T Consensus 240 ASa~-~~tIkLWd~~~~~~~~~~--~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNYSISSLK--TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEC-SSEEEEEETTTTEEEEEE--CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEe-CCeEEEEECCCCeEEEEE--cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8887 699999998876553332 479999999999 999999999999999 999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=270.75 Aligned_cols=253 Identities=17% Similarity=0.194 Sum_probs=176.0
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------- 126 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------- 126 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------
Confidence 333344444455677899999999999999987754321
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcC--------CC-eEEEEeCCCcEEEEeCCCCeEEE-EEecCCcEE
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK--------NG-FLLSSSADKTVRLWQVGIDRCLR-VFSHNNYVT 432 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~--------~~-~L~s~s~Dg~V~iWdl~s~~~~~-~~~h~~~V~ 432 (755)
.++..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++.++. .+.|...|.
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 11334679999999999997 66 99999999999999998776654 457999999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE--------------------------eccCCcceEEEEEc-cCCCeE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD--------------------------YTDIREIVSAVCYC-PDGKGG 485 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~--------------------------~~~~~~~V~~v~~s-pdg~~l 485 (755)
+++|+|.+.++|++|+.|++|++||+++++... ...|...+.++.|. |+|+.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998765331 13456678888887 799999
Q ss_pred EEEeCCCcEEEEECCCCeEeeeeeEEecc----------cccCCCCCeEEEEEcCC-CCCEEEEEECCCcEEEEECCcce
Q 004410 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQG----------KKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 486 a~gs~dg~I~iwD~~~~~~~~~~~~~~~~----------~~~~~~~~I~~v~fsp~-d~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
++++.|+++++||+..++....+...... .............++|. ++.++++|+.|+.|+|||..+..
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 99999999999999877654432211000 00011122223344443 44466777889999999998766
Q ss_pred eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 555 GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 555 ~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..... ..|...|.+++|+|||++||+++.|| |.+|.+.
T Consensus 351 ~~~~~--~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIP--IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEE--EECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEe--cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 55544 56888999999999999999998765 6666653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=264.75 Aligned_cols=278 Identities=10% Similarity=0.051 Sum_probs=212.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
..+.+++.+|++|+.||.|+||++..+... ..+. ...|.++.|+|+ |++++.|++|++|+......+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 455678899999999999999998754421 1222 467888999998 9999999999999975422111
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE-ecCCCCCEEEEEEcC-
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE-FQGHSSEVLDLSWSK- 398 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~s~- 398 (755)
.+. . ...+.. ..+|...|.+++|+|
T Consensus 110 ~~~-------------------------~----------------------------~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 110 DSK-------------------------T----------------------------NKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ETT-------------------------T----------------------------CCEEEEEECCCSSCEEEEECCC-
T ss_pred ecC-------------------------C----------------------------cceeEEeecCCCCCEEEEEcCCC
Confidence 100 0 011122 236778999999999
Q ss_pred -CC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--Eecc-CCc
Q 004410 399 -NG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV--DYTD-IRE 471 (755)
Q Consensus 399 -~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~-~~~ 471 (755)
++ +|++++.|++|++||+.+++++..+ .+...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA 215 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC
Confidence 88 9999999999999999999997776 3566899999999 9999999999999999999988765 5666 899
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe--EEEEEcCCCCCEEEEEEC-CCcEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI--TGFQFSPSDPSKVIVTSA-DSLVRVL 548 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I--~~v~fsp~d~~~l~s~s~-Dg~I~iw 548 (755)
.|++++|+|+|.+|++++ ++.|++||+++.+....... + ..+...+ .+++|+| ++.+|++++. |+.|+||
T Consensus 216 ~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 216 KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-Y----TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIY 288 (343)
T ss_dssp CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-C----BC-----CCEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-c----ccccccccceEEEECC-CCCEEEEecCCCCcEEEE
Confidence 999999999999999999 55999999998765432211 0 0011222 5799999 8999999998 9999999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEec---CCCEEEEEeCCCcEEEEEcCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTS---DGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fsp---dg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+.......+.. .++..++|.+ +++.|++++.||.+.++-....
T Consensus 289 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 289 KFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 98665444332 4567788888 8999999999999999865443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=258.51 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=229.0
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+..+..+...+.++.+.. ...
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------~~l 172 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD------------------NII 172 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET------------------TEE
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC------------------CEE
Confidence 457889887533 2555799999999999999999999998888876666555554431 134
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
+.++.++.+.+|+... .+.+..+.+|...|.+++|++ +.|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 173 ~s~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCc----CcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 5667788888887654 345778899999999999963 389999999999999999999988884 8999999998
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
++++|++|+.||.|++||+++++.+ .+..|...|.+++| ++.++++|+.||.|++||+++++.+...
T Consensus 248 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------- 315 (445)
T 2ovr_B 248 ---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL------- 315 (445)
T ss_dssp ---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-------
T ss_pred ---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-------
Confidence 5789999999999999999998877 56678899999999 8899999999999999999998876532
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-eccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
..+...+.++.+. +.++++++.|+.|++||..+......... ..|...|++++|+ +++|++|+.||.|++||+
T Consensus 316 -~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 316 -TGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -CCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -cCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 2356678888875 47999999999999999987655444311 1378899999995 689999999999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 390 ~~~~ 393 (445)
T 2ovr_B 390 KTGE 393 (445)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=262.47 Aligned_cols=244 Identities=22% Similarity=0.335 Sum_probs=207.6
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
+|.+.|.+++|+|+|++||+|+.||.|+||++.... ..+.+.+|...|.++.|+ +.+|++|+.|+.+++||
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-------~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-------RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHD 215 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-------EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEee
Confidence 445668899999999999999999999999987543 335678999999998875 67999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
..... ..+..+.+|...+.
T Consensus 216 ~~~~~-------------------------------------------------------------~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 216 VRVAE-------------------------------------------------------------HHVATLSGHSQEVC 234 (420)
T ss_dssp TTSSS-------------------------------------------------------------CEEEEEECCSSCEE
T ss_pred ecccc-------------------------------------------------------------eeeEEeccccccee
Confidence 86542 12455678999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeE----EEE-EecCCcEEEEEEeeCCCCEEEEE--eCCCcEEEEEcCCCeEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRC----LRV-FSHNNYVTSVAFNPVDDNYFISG--SIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~----~~~-~~h~~~V~~i~fsp~d~~~l~sg--s~Dg~V~iwdl~~~~~~ 464 (755)
.+.|++++ ++++++.|+.|++|++.+++. +.. ..|...|.+++|+|.+..+++++ +.|++|++||+.++++.
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 99999999 999999999999999987653 223 35899999999999777777764 57999999999999999
Q ss_pred EeccCCcceEEEEEccCCCeEEEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
........+.++.|+|+++.+++++ .||.|+|||+.+++.+.. ...|...|++++|+| ++.+|++++.|
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--------l~gH~~~V~~l~~sp-dg~~l~S~s~D 385 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP-DGATVASAAAD 385 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSCEEEEETT
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEecC
Confidence 8777888999999999999998866 689999999999887654 234778999999999 89999999999
Q ss_pred CcEEEEECCccee
Q 004410 543 SLVRVLCGENVVG 555 (755)
Q Consensus 543 g~I~iwd~~~~~~ 555 (755)
++|+|||+.+...
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999876443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-26 Score=250.78 Aligned_cols=266 Identities=14% Similarity=0.146 Sum_probs=215.0
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.++++++.++.|++|+..... ..+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-------~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~----- 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-------VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT----- 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-------EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----
T ss_pred EEEEEcCCCCEEEEEECCCCe-------EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-----
Confidence 467889999999999987543 223455554 58999999999977 6777999999999988764322
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-E
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-S 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s 404 (755)
+..| ..+.+++|+|++ +|+ +
T Consensus 70 ---------------------------------------------------------~~~~-~~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 70 ---------------------------------------------------------VPAG-SSPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp ---------------------------------------------------------EECS-SSEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EECC-CCccceEECCCCCEEEEE
Confidence 2222 379999999999 564 5
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC
Q 004410 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~ 483 (755)
++.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.|+.|++||+.+++.+........+.+++|+|+++
T Consensus 92 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT 170 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC
Confidence 5567999999999999999998888899999999 88866 788889999999999998887666667789999999999
Q ss_pred eE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE---CCCcEEEEECCcceeeEEE
Q 004410 484 GG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS---ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 484 ~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s---~Dg~I~iwd~~~~~~~~~~ 559 (755)
.| ++++.++.|++||+.+++...... +...+.+++|+| ++.+|++++ .++.|++||..+.......
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe---------cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 88 567788999999999987664322 245789999999 788888877 7999999999876544333
Q ss_pred eeeccCCceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHV-VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L-~sgs~Dg~I~iWd~~~~~ 598 (755)
. ....+.+++|+|+|++| ++++.|+.|++||+.+++
T Consensus 241 --~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 241 --P-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp --E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred --e-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 2 23457899999999988 677889999999999876
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=260.60 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=179.9
Q ss_pred EeeCCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEE--cCCCcEEEEEccCCeeeeeeecCCC
Q 004410 252 LGQRMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASG--GEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 252 sgs~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
+|+.|+.+++|++......+...... .....+...+.+++|||||++||+| +.|++|+|||+.+++.+.
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~------- 171 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF------- 171 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE-------
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE-------
Confidence 34568889999876544333222111 1223466779999999999998755 478999999998876432
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.+ .|...|.+++|+|++ +|++++
T Consensus 172 -------------------------------------------------------~~-~~~~~V~~v~fspdg~~l~s~s 195 (365)
T 4h5i_A 172 -------------------------------------------------------EI-ETRGEVKDLHFSTDGKVVAYIT 195 (365)
T ss_dssp -------------------------------------------------------EE-ECSSCCCEEEECTTSSEEEEEC
T ss_pred -------------------------------------------------------Ee-CCCCceEEEEEccCCceEEecc
Confidence 22 367789999999999 677766
Q ss_pred CCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEEcCCCeEE-----EeccCCcceE
Q 004410 407 ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWEVRRCQVV-----DYTDIREIVS 474 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwdl~~~~~~-----~~~~~~~~V~ 474 (755)
++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++...... .+..|...|+
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~ 273 (365)
T 4h5i_A 196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT 273 (365)
T ss_dssp -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence 556777777777765543 3888999999999 999999999887 6889998876532 4667888999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 475 AVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 475 ~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+++|+|||++||+|+.|++|+|||+.+++.+..+ ...|...|++++|+| ++++|++++.|++|+||++..
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-------~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-------KQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------TTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-------cCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999999876431 345788999999999 999999999999999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-27 Score=256.97 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=200.7
Q ss_pred EEEEEEecCCCE-EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 287 ILTMKFSLDGQY-LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 287 V~~l~fspdg~~-LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
...++++|+... +++++.||.|+||++......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~---------------------------------------------- 70 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV---------------------------------------------- 70 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----------------------------------------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----------------------------------------------
Confidence 345788887654 446789999999998654321
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEEEEeCCCC-------eEEEEE-ecCCcEEEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVRLWQVGID-------RCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~iWdl~s~-------~~~~~~-~h~~~V~~i~ 435 (755)
...+..+.+|.+.|.+++|+| ++ +|++++.|++|+|||+.++ +++..+ .|...|++++
T Consensus 71 ------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 71 ------------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp ------------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred ------------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 012345678999999999999 77 9999999999999999987 455666 4999999999
Q ss_pred EeeCCC-CEEEEEeCCCcEEEEEcCCCeEEE-e--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 436 FNPVDD-NYFISGSIDGKVRIWEVRRCQVVD-Y--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 436 fsp~d~-~~l~sgs~Dg~V~iwdl~~~~~~~-~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
|+| ++ ++|++++.||.|++||+.+++.+. + ..|...|++++|+|++++|++++.||.|++||+++++.+....
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 215 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-- 215 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--
Confidence 999 65 799999999999999999998874 4 5788999999999999999999999999999999988765321
Q ss_pred ecccccCCCC-CeEEEEEcCCCCCEEEEE---ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE-EeCC
Q 004410 512 LQGKKKLPGK-RITGFQFSPSDPSKVIVT---SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS-PSED 586 (755)
Q Consensus 512 ~~~~~~~~~~-~I~~v~fsp~d~~~l~s~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s-gs~D 586 (755)
..|.. .+..+.|+| ++.+|+++ +.|+.|++||..+...........+...+..++|+|++++|++ ++.|
T Consensus 216 -----~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 216 -----RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp -----CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred -----cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 22333 489999999 88899998 7999999999987654333333567788999999999999975 5579
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
|.|++||+.+++
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998876
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=259.81 Aligned_cols=269 Identities=16% Similarity=0.251 Sum_probs=208.3
Q ss_pred ceeeeeccCcceeecCC-CCeeEEeeCCCeEEEEECCCCcccc---cccccceeeecccccEEEEEEecCCC-EEEEEcC
Q 004410 230 AMARIIDRHGSATLKPG-DHELTLGQRMRRVRVHPVKKQSREL---SSLYTGQEFLAHEGSILTMKFSLDGQ-YLASGGE 304 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spd-g~~lasgs~dg~V~Vw~~~~~~~~~---~~~~~~~~l~~H~~~V~~l~fspdg~-~LaSgs~ 304 (755)
....|...+.+++|+|+ +.+||+++.+|.|+||++....... ........+.+|.+.|.+|+|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34567788999999998 6799999999999999986521111 11334467889999999999999998 9999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
||.|+||++.++...... ..+...+
T Consensus 203 dg~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~ 227 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRV-------------------------------------------------------IDAKNIF 227 (430)
T ss_dssp TSCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEE
T ss_pred CCeEEEEeCCCCCCCCce-------------------------------------------------------eccceee
Confidence 999999999764311000 0123456
Q ss_pred cCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---eEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 385 QGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGID---RCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~---~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+|...|.+++|+|+ + .|++++.|+.|++||++++ +.+..+ .|...|++++|+|....+|++|+.||.|++||+
T Consensus 228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 789999999999994 4 8899999999999999977 455555 599999999999943347999999999999999
Q ss_pred CCC-e-EEEeccCCcceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeee------eEEecccccCCCCCeEEEEEc
Q 004410 459 RRC-Q-VVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQN------QICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 459 ~~~-~-~~~~~~~~~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~------~~~~~~~~~~~~~~I~~v~fs 529 (755)
++. . +..+..|...|++++|+|+++ +|++++.||.|++||+......... ...+......|...|++++|+
T Consensus 308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 973 3 346677899999999999985 6899999999999999873211100 000011133467789999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcc
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
|++..+|++++.|+.|+||+....
T Consensus 388 p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEECCCCEEEeEcccc
Confidence 944449999999999999997653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=284.64 Aligned_cols=255 Identities=18% Similarity=0.226 Sum_probs=209.3
Q ss_pred cceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC--CCEEEEEcCCC
Q 004410 229 GAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD--GQYLASGGEDG 306 (755)
Q Consensus 229 ~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd--g~~LaSgs~Dg 306 (755)
..+.+|.+.+.+++|+|++++|++|+.||.|+||++.... ......+.+|.+.|++++|+|+ +++|++|+.||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 3567888999999999999999999999999999976332 2234567899999999999998 99999999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++||+.+++.. .+..+.+
T Consensus 78 ~I~vwd~~~~~~~------------------------------------------------------------~~~~~~~ 97 (753)
T 3jro_A 78 KVLIWKEENGRWS------------------------------------------------------------QIAVHAV 97 (753)
T ss_dssp CEEEEEEETTEEE------------------------------------------------------------EEEEECC
T ss_pred eEEEEECCCCccc------------------------------------------------------------ccccccC
Confidence 9999998776421 1345677
Q ss_pred CCCCEEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCeE---EEEEecCCcEEEEEEeeC------------CCCEEEEEe
Q 004410 387 HSSEVLDLSWSKN--G-FLLSSSADKTVRLWQVGIDRC---LRVFSHNNYVTSVAFNPV------------DDNYFISGS 448 (755)
Q Consensus 387 h~~~V~~l~~s~~--~-~L~s~s~Dg~V~iWdl~s~~~---~~~~~h~~~V~~i~fsp~------------d~~~l~sgs 448 (755)
|...|.+++|+|+ + .|++++.||+|++||+.++.. .....|...|++++|+|. ++.+|++|+
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs 177 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE
Confidence 9999999999998 7 999999999999999987732 333359999999999994 488999999
Q ss_pred CCCcEEEEEcCCC----eEE-EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 449 IDGKVRIWEVRRC----QVV-DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 449 ~Dg~V~iwdl~~~----~~~-~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
.||.|++||++++ ... .+..|...|++++|+|+ +++|++|+.||.|++||+.++....... ......+.
T Consensus 178 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~~~~~~ 254 (753)
T 3jro_A 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---LLKEEKFP 254 (753)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---BSSSSCCS
T ss_pred CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---EeccCCCC
Confidence 9999999999876 333 56788999999999999 8999999999999999999864221111 11123467
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
..|++++|+| ++.++++++.||.|++|+...
T Consensus 255 ~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 255 DVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCCCCEEECT-TTCCEEEECSSSCEECCBCCS
T ss_pred CceEEEEEcC-CCCEEEEEcCCCEEEEEecCC
Confidence 7899999999 889999999999999999773
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=246.64 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=213.5
Q ss_pred CCeEEEEECCCCcccccccccceeeecccccEEEEEEec-CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEE
Q 004410 256 MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL-DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334 (755)
Q Consensus 256 dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp-dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~ 334 (755)
++.++||+.... ...+.+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.++.....+.....
T Consensus 22 ~~~~~v~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------- 87 (408)
T 4a11_B 22 ESTRRVLGLELN-------KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------- 87 (408)
T ss_dssp HHHHHHHTEEEC-------TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-------
T ss_pred cCcceeeccccC-------cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-------
Confidence 344666664322 22345678999999999999 999999999999999999987754322210000
Q ss_pred eeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEeCCCcEE
Q 004410 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSSADKTVR 412 (755)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s~Dg~V~ 412 (755)
.........+|...|.+++|+| ++ +|++++.|+.|+
T Consensus 88 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 88 ------------------------------------------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp ------------------------------------------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred ------------------------------------------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 0000112346999999999999 55 999999999999
Q ss_pred EEeCCCCeEEEEEecCCcEEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCe-EEEE
Q 004410 413 LWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKG-GIVG 488 (755)
Q Consensus 413 iWdl~s~~~~~~~~h~~~V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~-la~g 488 (755)
+||+.+++.+..+.+...+.++.++|. ++.++++++.|+.|++||+++++.+ .+..|...|++++|+|+++. |++|
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 126 VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATA 205 (408)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred EeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEE
Confidence 999999999999999999999999983 2349999999999999999988765 56678899999999999985 8899
Q ss_pred eCCCcEEEEECCCCeEeee-ee-------EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe
Q 004410 489 TMTGNCRFYDIKDNQLYQQ-NQ-------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS 560 (755)
Q Consensus 489 s~dg~I~iwD~~~~~~~~~-~~-------~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 560 (755)
+.||.|++||++++..... .. .........+...|++++|+| ++.+|++++.|+.|++||..+........
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 284 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNY 284 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceecc
Confidence 9999999999987652211 10 001111245778899999999 89999999999999999988754432221
Q ss_pred ee---ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 561 AF---RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 561 ~~---~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.. .....+........+..+++++.|+.|++||+.+++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 326 (408)
T 4a11_B 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ 326 (408)
T ss_dssp CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence 00 1111222222234456677778899999999988763
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=248.97 Aligned_cols=232 Identities=21% Similarity=0.317 Sum_probs=200.1
Q ss_pred ecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK 360 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (755)
.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~------------------------------------------ 165 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC------------------------------------------ 165 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE------------------------------------------
Confidence 357778999887 799999999999999999877653
Q ss_pred cCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEee
Q 004410 361 SSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNP 438 (755)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp 438 (755)
+..+.+|...|.+++| ++ .|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 166 --------------------~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 166 --------------------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp --------------------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred --------------------EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 3445689999999999 45 99999999999999999999998884 899999999964
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
++|++|+.||.|++||+.++... ....|...|.+++| ++++|++|+.||.|++||+++++.+...
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 292 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL------ 292 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE------
Confidence 59999999999999999876542 46678899999999 8899999999999999999998876542
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
..|...|.++.+. +.++++++.|+.|++||..+....... ..|...|.+++| ++.+|++|+.||.|++||+
T Consensus 293 --~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 293 --NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp --ECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred --cCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE--eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 2466789999994 489999999999999999886555544 678899999998 7899999999999999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.++.
T Consensus 364 ~~~~ 367 (435)
T 1p22_A 364 VAAL 367 (435)
T ss_dssp HHHT
T ss_pred CCCC
Confidence 7665
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=251.35 Aligned_cols=289 Identities=10% Similarity=-0.014 Sum_probs=203.0
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe---eeeeeecCCCCCceeEEeeC--CCCceeEEeecCcceeeeeeee
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYFTIN--HLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
.+|.+++|+|||++|+++ .++.|++||+.+++ .+..+..+........+... ....+..... ..+..+. .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENEN-ENKKLKS---N 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccc-ccccccc---C
Confidence 578899999999977766 57899999999998 55555433210000000000 0000000000 0000000 0
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCC--CCeEEEEE---ecCCcEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVG--IDRCLRVF---SHNNYVT 432 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~--s~~~~~~~---~h~~~V~ 432 (755)
.... . ...... ...+.....+|.+.|.+++|+|++ +| ++++.|++|+|||+. +++++..+ .|...|+
T Consensus 80 ~~~~--~---~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 80 KGDS--I---KRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred cCcc--c---cccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce
Confidence 0000 0 000000 011223445788899999999999 64 889999999999999 88888777 4789999
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-----EeccCCcceEEEEEccC---CCeEEEEeCCCcEEEEECCCCeE
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-----DYTDIREIVSAVCYCPD---GKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-----~~~~~~~~V~~v~~spd---g~~la~gs~dg~I~iwD~~~~~~ 504 (755)
+++|+| ++++|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.++..
T Consensus 154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999 9999999999999999999877644 45678899999999999 99999999999999999998875
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee----------------------
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF---------------------- 562 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---------------------- 562 (755)
+... ...|...|++++|+ ++.+|++++.|+.|+|||+.+..........
T Consensus 233 ~~~~-------~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 233 VDKW-------LFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp EEEE-------CCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eeee-------ecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 5321 22467899999999 8899999999999999999876544433211
Q ss_pred -ccCCceEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004410 563 -RVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNY 594 (755)
Q Consensus 563 -~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~ 594 (755)
.....|..++|+|++++|++++ .|+.|+||++
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2345789999999999999999 8999999999
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=264.90 Aligned_cols=251 Identities=11% Similarity=0.109 Sum_probs=194.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|...+.+++|+|+| .++.+.+|+..... .+. ..|...|.+++|||||++||+++.||.|+
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~~--------~~~~~~V~~vawSPdG~~LAs~s~dg~V~ 110 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LLN--------SQPVCYPRVCKPSPIDDWMAVLSNNGNVS 110 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SST--------TSCSCCEEEEEECSSSSCEEEEETTSCEE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Eee--------cCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 446788899999999999 46666666543211 111 14678999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
||+... . +..+. |..
T Consensus 111 iwd~~~--~--------------------------------------------------------------l~~l~-~~~ 125 (588)
T 2j04_A 111 VFKDNK--M--------------------------------------------------------------LTNLD-SKG 125 (588)
T ss_dssp EEETTE--E--------------------------------------------------------------EEECC-CSS
T ss_pred EEeCCc--e--------------------------------------------------------------eeecc-CCC
Confidence 999532 1 12223 333
Q ss_pred -----CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-------EEEEE-----ecCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 390 -----EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-------CLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 390 -----~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-------~~~~~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
.|.+++|||+| +|++|+.||+|+|||+.++. .+.++ +|...|.+++|+| ++ +++++.|+
T Consensus 126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~ 202 (588)
T 2j04_A 126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNN 202 (588)
T ss_dssp CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTC
T ss_pred ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCC
Confidence 59999999999 99999999999999999885 35665 2678999999999 77 88899999
Q ss_pred cEEEEEcCCCeEE----Ee-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 452 KVRIWEVRRCQVV----DY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 452 ~V~iwdl~~~~~~----~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
+|++||+.++... .+ ..|...|.+++|+ |+.||+++ +++|++||+.+++.... ...|...|..+
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--------~~gh~~~V~~v 271 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--------KTGSLENFHII 271 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--------ECSCCSCCCEE
T ss_pred eEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--------EcCCCceEEEE
Confidence 9999999887732 24 3677899999999 68899887 69999999999887421 22477899999
Q ss_pred EE--cCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 527 QF--SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 527 ~f--sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
+| +| ++..++++..||+ ++|.... ++|+||+..+++. |++|++|+...+
T Consensus 272 a~~~s~-d~~~La~a~edG~-klw~~d~------------------~~~spd~~l~a~~--d~~v~lW~~~g~ 322 (588)
T 2j04_A 272 PLNHEK-ESTILLMSNKTSY-KVLLEDE------------------LHVTADNIIAPYL--EKKFKKWSTIWN 322 (588)
T ss_dssp EETTCS-SCEEEEECSSCEE-EEEESSS------------------EEEECCCSSHHHH--HHHHHHTTTTTT
T ss_pred EeeeCC-CCCEEEEEcCCCC-EEEeecc------------------EEECCCceEEEEc--CCEEEEEECCCC
Confidence 99 99 8899999999999 9998651 3466666655554 666666665433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=236.45 Aligned_cols=242 Identities=22% Similarity=0.325 Sum_probs=203.0
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
+|...|.+++|+|++++||+|+.||+|+||++.... ..+.+.+|...+.++.+ ++.+|++++.++.+++|+
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-------eEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence 445568889999999999999999999999987543 33567899998887655 577999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
...... .+..+.+|...+.
T Consensus 136 ~~~~~~-------------------------------------------------------------~~~~~~~~~~~~~ 154 (318)
T 4ggc_A 136 VRVAEH-------------------------------------------------------------HVATLSGHSQEVC 154 (318)
T ss_dssp TTSSSC-------------------------------------------------------------EEEEEECCSSCEE
T ss_pred cCCCce-------------------------------------------------------------eEEEEcCccCceE
Confidence 765431 2445678999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEE-----EEEecCCcEEEEEEeeCCCCEE--EEEeCCCcEEEEEcCCCeEE
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-----RVFSHNNYVTSVAFNPVDDNYF--ISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~-----~~~~h~~~V~~i~fsp~d~~~l--~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.+.+++++ +|++++.|++|++||+.+++.. ....+...|.+++++|.+...+ ++++.++.|++||.......
T Consensus 155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 99999999 9999999999999999876532 2224888999999999555655 35677899999999999988
Q ss_pred EeccCCcceEEEEEccCCCeEEEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
....+...+..++|+|++..+++++ .|+.|++||+.+++++.. ...|...|++++|+| ++.+|++++.|
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--------l~gH~~~V~~l~~sp-dg~~l~S~s~D 305 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--------LKGHTSRVLSLTMSP-DGATVASAAAD 305 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSCEEEEETT
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEecC
Confidence 8888889999999999999888765 799999999999987754 234778999999999 89999999999
Q ss_pred CcEEEEECCcc
Q 004410 543 SLVRVLCGENV 553 (755)
Q Consensus 543 g~I~iwd~~~~ 553 (755)
++|+|||+.+.
T Consensus 306 ~~v~iWd~~~~ 316 (318)
T 4ggc_A 306 ETLRLWRCFEL 316 (318)
T ss_dssp TEEEEECCSCC
T ss_pred CeEEEEECCCC
Confidence 99999998653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=243.46 Aligned_cols=246 Identities=9% Similarity=0.062 Sum_probs=181.4
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+++.+|.+.|++++|+|||++||+|+.++ ++||++.+++.....
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~----------------------------------- 56 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ----------------------------------- 56 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-----------------------------------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-----------------------------------
Confidence 34578999999999999999999998775 789998665432110
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+...+..+++.+++ .+++++.|++|++||+.+++++..+.+...|.+++
T Consensus 57 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~ 107 (355)
T 3vu4_A 57 -----------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLF 107 (355)
T ss_dssp -----------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred -----------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEE
Confidence 11135566777766 44678888999999999999999999999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCC-eEEEeccCCcceEEEEEccCCCeEEE--EeCCCcEEEEECCCCeEeeeeeEE-
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRC-QVVDYTDIREIVSAVCYCPDGKGGIV--GTMTGNCRFYDIKDNQLYQQNQIC- 511 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~-~~~~~~~~~~~V~~v~~spdg~~la~--gs~dg~I~iwD~~~~~~~~~~~~~- 511 (755)
|++ + .++++ .|+.|++||+.+. +.+..... ....+++++ .++++ |+.+|.|++||+.++.........
T Consensus 108 ~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~ 179 (355)
T 3vu4_A 108 LSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV 179 (355)
T ss_dssp ECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------
T ss_pred EcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence 987 3 34444 4889999999987 44422222 445566777 56666 588999999999986521100000
Q ss_pred ------e-cccccCCCCCeEEEEEcCCCCCEEEEEECCCc-EEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEE
Q 004410 512 ------L-QGKKKLPGKRITGFQFSPSDPSKVIVTSADSL-VRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 512 ------~-~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~s 582 (755)
. ......|...|++++|+| ++.+|++++.|++ |+|||..+........ .+ |...|.+++|+|+|++|++
T Consensus 180 ~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-~g~h~~~v~~~~~s~~~~~l~s 257 (355)
T 3vu4_A 180 QQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFR-RGLDRADVVDMKWSTDGSKLAV 257 (355)
T ss_dssp -------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEE-CTTCCSCEEEEEECTTSCEEEE
T ss_pred cccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE-cCCCCCcEEEEEECCCCCEEEE
Confidence 0 112345788999999999 9999999999998 9999998866555542 13 8899999999999999999
Q ss_pred EeCCCcEEEEEcCCCC
Q 004410 583 PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 583 gs~Dg~I~iWd~~~~~ 598 (755)
++.|+.|+|||+..+.
T Consensus 258 ~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 258 VSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EETTCEEEEEESSCCS
T ss_pred EECCCEEEEEEccCCC
Confidence 9999999999998763
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=246.80 Aligned_cols=232 Identities=13% Similarity=0.121 Sum_probs=178.2
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeC
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP 370 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (755)
.+.+++.+|++|+.||+|++||+.+++.+..+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------------------- 75 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------------------- 75 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------------------------------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------------------------------------
Confidence 455688999999999999999998876543321
Q ss_pred CcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCC---------CCeEEEEEe--cCCcEEEEEEee-
Q 004410 371 PKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVG---------IDRCLRVFS--HNNYVTSVAFNP- 438 (755)
Q Consensus 371 ~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~---------s~~~~~~~~--h~~~V~~i~fsp- 438 (755)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 76 -----------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 76 -----------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp -----------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred -----------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 122344556666 8888888888888654 666555553 668899999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe-eeeeEEeccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY-QQNQICLQGK 515 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~-~~~~~~~~~~ 515 (755)
.++++|++++.||+|++||+++++.+... .+...|++++|+|+|.+|++|+.||.|++||+++++.. ..
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~-------- 208 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR-------- 208 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE--------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE--------
Confidence 35789999999999999999998887433 45557999999999999999999999999999988754 22
Q ss_pred ccC-CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEee-eccCCce--EEEEEecCCCEEEEEeC-CCcEE
Q 004410 516 KKL-PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASA-FRVAGSQ--MFATFTSDGKHVVSPSE-DSNIY 590 (755)
Q Consensus 516 ~~~-~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v--~~l~fspdg~~L~sgs~-Dg~I~ 590 (755)
... |...|++++|+| ++.+|++++ |+.|++||+........... ..+...+ .+++|+|+|++|++++. |+.|+
T Consensus 209 ~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 209 FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp CCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred EeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 222 678999999999 899999999 55999999887543221100 0122222 46999999999999998 99999
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
||++.+..
T Consensus 287 v~~~~~~~ 294 (343)
T 3lrv_A 287 IYKFDKKT 294 (343)
T ss_dssp EEEECTTT
T ss_pred EEEEcccc
Confidence 99997665
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=252.73 Aligned_cols=237 Identities=13% Similarity=0.117 Sum_probs=172.2
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEec--------CCCEEEEEcCCCcEEE
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSL--------DGQYLASGGEDGTVRV 310 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp--------dg~~LaSgs~Dg~I~v 310 (755)
....+++++.+||+|+.|++|+||+....... .......+.+|.+.|++|+|+| |+++||||+.|++|+|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETII--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccc--eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 34667888889999999999999997754321 1223345789999999999998 8999999999999999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.++.. +..+.+|...
T Consensus 171 Wd~~~~~~--------------------------------------------------------------~~~~~~~~~~ 188 (393)
T 4gq1_A 171 WRLTDEGP--------------------------------------------------------------ILAGYPLSSP 188 (393)
T ss_dssp EEEETTEE--------------------------------------------------------------EEEEEECSSC
T ss_pred EECCCCce--------------------------------------------------------------eeeecCCCCC
Confidence 99976643 2334568899
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEE--------------------------ecCCcEEEEEEeeCCCC
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVF--------------------------SHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~--------------------------~h~~~V~~i~fsp~d~~ 442 (755)
|.+++|+|++ +|++++.|++|++||+.+++..... .|...|.++.|.+.++.
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 9999999987 7999999999999999887654322 26678899999854999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEE-EeccCCcceE------------------EEEEcc--CCCeEEEEeCCCcEEEEECCC
Q 004410 443 YFISGSIDGKVRIWEVRRCQVV-DYTDIREIVS------------------AVCYCP--DGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~------------------~v~~sp--dg~~la~gs~dg~I~iwD~~~ 501 (755)
.|++++.|+++++||+..++.. .+..+...+. ...|+| ++.++++|+.||.|++||+.+
T Consensus 269 ~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 269 GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 9999999999999999876543 2222222222 233444 344667788999999999998
Q ss_pred CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 502 NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
+...... ..+...|.+++|+| ++++|++++.+| +.+|.
T Consensus 349 ~~~~~~~--------~~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 349 KDSNSIP--------IQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp TTCCEEE--------EECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred CcEEEEe--------cCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 8765431 22557899999999 999999998776 44444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=233.54 Aligned_cols=278 Identities=17% Similarity=0.195 Sum_probs=212.6
Q ss_pred cCcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEcc
Q 004410 237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~ 314 (755)
.+.+++|+|+++++ ++++.++.|++|+...... .+.+..|. .|.+++|+|++++|+ +++.++.|++||+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 45679999999976 6777899999999865432 23344444 899999999999875 55567999999998
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
+++.+..+ . +...+.++
T Consensus 105 ~~~~~~~~--------------------------------------------------------------~-~~~~~~~~ 121 (391)
T 1l0q_A 105 SNTVAGTV--------------------------------------------------------------K-TGKSPLGL 121 (391)
T ss_dssp TTEEEEEE--------------------------------------------------------------E-CSSSEEEE
T ss_pred CCeEEEEE--------------------------------------------------------------e-CCCCcceE
Confidence 77643221 1 23467899
Q ss_pred EEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 395 SWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 395 ~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
+|+|++ .| ++++.++.|++||+.+++.+..+.....+.+++|+| +++++ ++++.++.|++||+++++.+....+..
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 999999 55 688889999999999999999998778889999999 78776 677889999999999999887777788
Q ss_pred ceEEEEEccCCCeEEEEe---CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEE
Q 004410 472 IVSAVCYCPDGKGGIVGT---MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs---~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~i 547 (755)
.+.+++|+|+|++|++++ .++.|++||+.+++.+.... ....+.+++|+| ++++| ++++.|+.|++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~s~-dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VGPDPAGIAVTP-DGKKVYVALSFXNTVSV 270 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe---------cCCCccEEEEcc-CCCEEEEEcCCCCEEEE
Confidence 899999999999999988 68999999999987654322 123578999999 67666 66688999999
Q ss_pred EECCcceeeEEEeeeccCCce---------------EEEEEecCC----------CEEEEEeCCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQ---------------MFATFTSDG----------KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v---------------~~l~fspdg----------~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
||..+....... ..+..+. ....|+.+. ..+...+.|..+++|++.++.
T Consensus 271 ~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 271 IDTATNTITATM--AVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EETTTTEEEEEE--ECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred EECCCCcEEEEE--ECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 998875443332 1121111 112233222 345666778899999998776
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=226.83 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=193.5
Q ss_pred cEEEEEEecCCC---EEEEEcCCCcEEEEEccCC---eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 286 SILTMKFSLDGQ---YLASGGEDGTVRVWKVIEH---ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 286 ~V~~l~fspdg~---~LaSgs~Dg~I~vWdv~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
.+.+|.|-.-|- .++++++ .+|++|+..++ +.+++...+...+..+.+.++..+.+. +....-.+.....+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC-VALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE-EEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee-eeeccccccceEEEE
Confidence 356666755443 6888886 58999999998 888888888877777777766555443 333333333333333
Q ss_pred ecCC----ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe---CCCcEEEEeCC-CCeEEEEE-ecCCc
Q 004410 360 KSSD----LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS---ADKTVRLWQVG-IDRCLRVF-SHNNY 430 (755)
Q Consensus 360 ~~~~----~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s---~Dg~V~iWdl~-s~~~~~~~-~h~~~ 430 (755)
-+.+ .... .-.+|...|..+ +++.++.++ .|++|++|++. .++.+..+ .|...
T Consensus 119 ~spd~~~~~~~l---------------~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~ 180 (356)
T 2w18_A 119 CSSDDESEKQVL---------------LKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE 180 (356)
T ss_dssp C------CCEEE---------------EEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS
T ss_pred ECCCccccccEE---------------EeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc
Confidence 3333 2211 113444445554 566655554 49999999994 47776665 48888
Q ss_pred EEEEEEeeC--CCCEEEEEeCCCcEEEEEcCCCeEEE-eccCC---cceEEEEEccCCCeE------------EEEeCCC
Q 004410 431 VTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQVVD-YTDIR---EIVSAVCYCPDGKGG------------IVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~--d~~~l~sgs~Dg~V~iwdl~~~~~~~-~~~~~---~~V~~v~~spdg~~l------------a~gs~dg 492 (755)
++.++|+|. ++.+|++|+.|++|+|||+.+++++. +..+. ..+.+++|+|+|+++ ++|+.|+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 888888874 66999999999999999999998874 43333 367888999999887 5577899
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceE-EE
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQM-FA 571 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~-~l 571 (755)
+|++||..+++.+....+.+ ...|...+.+..+ ++.++++++.|++|+|||+.+....... .+|...+. .+
T Consensus 261 tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL--~gH~~~vvs~v 332 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL--PPVSDQHWSFV 332 (356)
T ss_dssp EEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE--CCC--CCCCEE
T ss_pred EEEEEECCCCEEEEEEEeec---cCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe--cCCCCCeEEEE
Confidence 99999999998775433222 1123333444444 3578999999999999999987655554 56666554 68
Q ss_pred EEecCCCEEEEEeCCCcEEEEEc
Q 004410 572 TFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+|+|||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=240.04 Aligned_cols=248 Identities=11% Similarity=0.106 Sum_probs=202.0
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
.+..+ ..+.+++|+|++.++++++.|+.|++||+.+++....+.
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------------------------------- 161 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP----------------------------------- 161 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC-----------------------------------
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC-----------------------------------
Confidence 34444 346699999988888888999999999998876542211
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEE
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~f 436 (755)
...+.+|...|.+++|++++ .+++++.|+.|++||+.+++.+..+. |...+.+++|
T Consensus 162 ----------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 162 ----------------------PEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY 219 (433)
T ss_dssp ----------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE
T ss_pred ----------------------cccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE
Confidence 11245788999999999999 88899999999999999999988885 8889999999
Q ss_pred eeCCCCEEE-EEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEe--------CCCcEEEEECCCCeEeee
Q 004410 437 NPVDDNYFI-SGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT--------MTGNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 437 sp~d~~~l~-sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs--------~dg~I~iwD~~~~~~~~~ 507 (755)
+| ++++++ +++.|+.|++||+++++.+........+.+++|+|+|+.|++++ .||.|++||+.+++....
T Consensus 220 ~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 220 DP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp ET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred cC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 99 777774 55589999999999999887666677899999999999999988 488999999999877653
Q ss_pred eeEEecccccCCCCCeEEEEEcCCCCC-EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-
Q 004410 508 NQICLQGKKKLPGKRITGFQFSPSDPS-KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE- 585 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~- 585 (755)
.. +...+.+++|+| +++ ++++++.|+.|++||..+...... ..+...+.+++|+|+|++|++++.
T Consensus 299 ~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 299 IG---------PPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKS---IPVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EE---------EEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEE---EECSSSEEEEEECTTSSEEEEEECC
T ss_pred cc---------CCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEE---ecCCCCCCeEEEcCCCCEEEEEecC
Confidence 21 123678999999 554 566778999999999987554433 346678999999999999998887
Q ss_pred --------------CCcEEEEEcCCCC
Q 004410 586 --------------DSNIYIWNYSNQD 598 (755)
Q Consensus 586 --------------Dg~I~iWd~~~~~ 598 (755)
||.|++||+.+++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCccccccccccccceEEEEEECCCCc
Confidence 5799999998876
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=235.51 Aligned_cols=279 Identities=12% Similarity=0.065 Sum_probs=216.5
Q ss_pred cCcceeecCCCC-eeEEee----CCC----eEEEEEC--CCCcccccccccceeeecccccEEEEEEec-----------
Q 004410 237 RHGSATLKPGDH-ELTLGQ----RMR----RVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----------- 294 (755)
Q Consensus 237 ~~~~~~~spdg~-~lasgs----~dg----~V~Vw~~--~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp----------- 294 (755)
.+....|.+.|. ++++|+ .+| .|+|||+ .++... ....+.+|...+..+++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----AQNSYKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----EEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----eeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 455577888876 555775 467 8999998 654422 1245778888888888775
Q ss_pred ---CCCEEEEEcCC------CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 295 ---DGQYLASGGED------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 295 ---dg~~LaSgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.+..|+.++.+ +.|++||+..+.
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------------------------------ 170 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------------------------------ 170 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------------------------------------
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------------------------------------
Confidence 25666666654 799999985332
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD 441 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg---~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~ 441 (755)
...+.+|...|.+++|+|+| .|++++.++ .|++||+.++++.....|...+.+++|+| ++
T Consensus 171 ---------------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg 234 (415)
T 2hqs_A 171 ---------------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DG 234 (415)
T ss_dssp ---------------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TS
T ss_pred ---------------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CC
Confidence 23455688899999999999 899998875 99999999999887777888999999999 88
Q ss_pred CEEE-EEeCCCc--EEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC-CC--cEEEEECCCCeEeeeeeEEeccc
Q 004410 442 NYFI-SGSIDGK--VRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM-TG--NCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 442 ~~l~-sgs~Dg~--V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~-dg--~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
++|+ +++.|+. |++||+.+++...+..+...+.+++|+|||+.|++++. ++ .|++||+.+++...
T Consensus 235 ~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~--------- 305 (415)
T 2hqs_A 235 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR--------- 305 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------
T ss_pred CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------
Confidence 8777 6666665 99999999988888888889999999999999998886 44 68888998876432
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECC---CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC---cE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSAD---SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS---NI 589 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg---~I 589 (755)
...+...+..++|+| ++++|++++.+ ..|++||..+..... . ..+ ..+.+++|+|||++|++++.|+ .|
T Consensus 306 l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l--~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 306 ITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--SST-FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp CCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEEE-C--CCS-SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred EecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEEE-e--cCC-CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 112345788999999 88888877764 589999988754422 1 333 3889999999999999998887 79
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
++||+..+.
T Consensus 381 ~~~d~~g~~ 389 (415)
T 2hqs_A 381 NLVSTDGRF 389 (415)
T ss_dssp EEEETTSCC
T ss_pred EEEECCCCc
Confidence 999987544
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-23 Score=215.31 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=153.3
Q ss_pred cccEEEEEEecC----CCEEEEEcCCCcEEEEEccCCeeeeee-ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeee
Q 004410 284 EGSILTMKFSLD----GQYLASGGEDGTVRVWKVIEHERLDGF-DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSL 358 (755)
Q Consensus 284 ~~~V~~l~fspd----g~~LaSgs~Dg~I~vWdv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (755)
...|++|+|+|| ++++++++.+ ++||++.+++.+... ..+.. .+..+.+..
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~-------------~V~~~~~s~--------- 166 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ-------------QVEVMTFAE--------- 166 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC-------------EEEEEEECT---------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC-------------cEEEEEECC---------
Confidence 347888888889 8899998854 888998777655432 11111 111111111
Q ss_pred eecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC---CC-eEEEEeCCCcEEEEeCCCCeEEEEEe-c---CCc
Q 004410 359 RKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK---NG-FLLSSSADKTVRLWQVGIDRCLRVFS-H---NNY 430 (755)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~---~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h---~~~ 430 (755)
.++.+..+.+|...+..++|++ ++ .|++++.|++|+|||+.++++++++. | ...
T Consensus 167 ------------------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~ 228 (356)
T 2w18_A 167 ------------------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS 228 (356)
T ss_dssp ------------------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred ------------------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence 0233456678999999999998 55 99999999999999999999999995 3 346
Q ss_pred EEEEEEeeCCCCEE------------EEEeCCCcEEEEEcCCCeEEEec------cCCcceEEEEEccCCCeEEEEeCCC
Q 004410 431 VTSVAFNPVDDNYF------------ISGSIDGKVRIWEVRRCQVVDYT------DIREIVSAVCYCPDGKGGIVGTMTG 492 (755)
Q Consensus 431 V~~i~fsp~d~~~l------------~sgs~Dg~V~iwdl~~~~~~~~~------~~~~~V~~v~~spdg~~la~gs~dg 492 (755)
+.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+..+ ++..+++|+.||
T Consensus 229 v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 229 VCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp CEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred eEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCC
Confidence 88889999 88876 56889999999999999876422 44444443333 488999999999
Q ss_pred cEEEEECCCCeEeeeeeEEecccccCCCCC-eEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 493 NCRFYDIKDNQLYQQNQICLQGKKKLPGKR-ITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 493 ~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~-I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
+|+|||+.+++.+.++ . .|... +..++|+| ++++|++|+.|++|+|||.
T Consensus 306 TIkIWDl~tGk~l~tL----~----gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALL----P----PVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEE----C----CC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEe----c----CCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999999987642 2 23333 44689999 9999999999999999984
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=231.39 Aligned_cols=319 Identities=12% Similarity=0.105 Sum_probs=230.7
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc--cCCee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV--IEHER 318 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv--~~~~~ 318 (755)
-+++|++.+++++..+++|.+||..+.. ..+++..+.. +..++|+|||++|++++.|+.|++||+ .+++.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~-------~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKK-------IVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCC-------EEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCce-------EEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 3589999999999999999999976543 2244552222 889999999999999999999999999 88888
Q ss_pred eeeeecCCCCCceeEEee----CCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC--------
Q 004410 319 LDGFDVQDTDPSCLYFTI----NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-------- 386 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------- 386 (755)
+..+.. ...+..+.|.+ ++. .++.... .+..+.+|+.... +++.++..
T Consensus 215 ~~~i~~-g~~p~~va~sp~~~~dg~-~l~v~~~--------------~~~~v~v~D~~t~----~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 215 VAEIKI-GIEARSVESSKFKGYEDR-YTIAGAY--------------WPPQFAIMDGETL----EPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTT-EEEEEEE--------------ESSEEEEEETTTC----CEEEEEECCEECSSSC
T ss_pred EEEEec-CCCcceEEeCCCcCCCCC-EEEEEEc--------------cCCeEEEEecccc----ccceeecccCcccCcc
Confidence 877764 33455666665 332 2222211 1334444443322 22333322
Q ss_pred --C-CCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEc
Q 004410 387 --H-SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEV 458 (755)
Q Consensus 387 --h-~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl 458 (755)
| ...+..+.+++++ .+++...+++|.+||+.+.+.+. .+.+...+.++.|+| ++++|++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence 2 2378999999987 67778889999999998866544 556778899999999 888776554 6899999999
Q ss_pred CCCeEEEecc-----CCcceEEEEEccC-CCeEEEEe-CCCcEEEEECCC-------CeEeeeeeEEecccccCCCCCeE
Q 004410 459 RRCQVVDYTD-----IREIVSAVCYCPD-GKGGIVGT-MTGNCRFYDIKD-------NQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 459 ~~~~~~~~~~-----~~~~V~~v~~spd-g~~la~gs-~dg~I~iwD~~~-------~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
.+++++.... |......+ ++|+ |..++++. .+++|.+||+.+ .+.++.+ ..+...+.
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l--------~~~g~~~~ 424 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--------QGQGGGSL 424 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE--------ECSCSCCC
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE--------EcCCCCce
Confidence 9998875332 33333333 5777 55566665 579999999988 5555432 23456678
Q ss_pred EEEEcCCCCCEEEEEE-------CCCcEEEEECCcceeeEEEee-------eccCCceEEEEEecCCCEEEEEe-----C
Q 004410 525 GFQFSPSDPSKVIVTS-------ADSLVRVLCGENVVGKFKASA-------FRVAGSQMFATFTSDGKHVVSPS-----E 585 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~~-------~~~~~~v~~l~fspdg~~L~sgs-----~ 585 (755)
.+.++| ++++|++++ .+++|.|||..+....+.... ..+...+..+.|+|+|++|+++. .
T Consensus 425 ~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTS
T ss_pred EEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCC
Confidence 899999 899999987 277999999998765533321 23467899999999999998763 4
Q ss_pred CCcEEEEEcCCCC
Q 004410 586 DSNIYIWNYSNQD 598 (755)
Q Consensus 586 Dg~I~iWd~~~~~ 598 (755)
|+.|.|||..+++
T Consensus 504 ~~~i~v~D~~t~~ 516 (543)
T 1nir_A 504 SSALVVVDDKTLK 516 (543)
T ss_dssp CCEEEEEETTTTE
T ss_pred CCeEEEEECCCce
Confidence 7999999999987
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-22 Score=220.76 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=194.0
Q ss_pred CCeeEEeeCC------CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC---cEEEEEccCCe
Q 004410 247 DHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG---TVRVWKVIEHE 317 (755)
Q Consensus 247 g~~lasgs~d------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg---~I~vWdv~~~~ 317 (755)
+..++.++.+ +.|++||..... .+.+.+|.+.|.+++|+|||++||+++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 5556655543 799999986321 245778999999999999999999999875 99999998765
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
.. .+..|...+.+++|+
T Consensus 215 ~~---------------------------------------------------------------~l~~~~~~~~~~~~s 231 (415)
T 2hqs_A 215 VR---------------------------------------------------------------QVASFPRHNGAPAFS 231 (415)
T ss_dssp EE---------------------------------------------------------------EEECCSSCEEEEEEC
T ss_pred EE---------------------------------------------------------------EeecCCCcccCEEEc
Confidence 31 234567789999999
Q ss_pred CCC-eEE-EEeCCCc--EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CC--cEEEEEcCCCeEEEeccCC
Q 004410 398 KNG-FLL-SSSADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DG--KVRIWEVRRCQVVDYTDIR 470 (755)
Q Consensus 398 ~~~-~L~-s~s~Dg~--V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg--~V~iwdl~~~~~~~~~~~~ 470 (755)
|+| .|+ +++.++. |++||+.++++.....|...+.+++|+| ++++|++++. ++ .|++||+.+++...+..+.
T Consensus 232 pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~ 310 (415)
T 2hqs_A 232 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 310 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCC
Confidence 999 666 6666655 9999999998866667888999999999 9998888876 44 6888899988877766777
Q ss_pred cceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC---c
Q 004410 471 EIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS---L 544 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg---~ 544 (755)
..+.+++|+|||++|++++.+ +.|++||+.+++... +. .+ ..+..++|+| ++++|++++.++ .
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-----l~----~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----LS----ST-FLDETPSLAP-NGTMVIYSSSQGMGSV 379 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----CC----CS-SSCEEEEECT-TSSEEEEEEEETTEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-----ec----CC-CCcCCeEEcC-CCCEEEEEEcCCCccE
Confidence 889999999999999988764 579999999887632 11 12 2789999999 888888888777 7
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~ 578 (755)
|++||..... ... ...+.+.|.+++|+|.-.
T Consensus 380 l~~~d~~g~~-~~~--l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 380 LNLVSTDGRF-KAR--LPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEETTSCC-EEE--CCCSSSEEEEEEECCCCC
T ss_pred EEEEECCCCc-EEE--eeCCCCCCcCCccccccc
Confidence 9999986432 222 266888999999999754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-22 Score=209.44 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=191.1
Q ss_pred eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC-CcEEEEEcc--CCeeeeeeecC
Q 004410 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTVRVWKVI--EHERLDGFDVQ 325 (755)
Q Consensus 249 ~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-g~I~vWdv~--~~~~~~~~~~~ 325 (755)
++++++.++.|++|++..... +. ..+ ...|...+.+++|+|+|++|++++.+ +.|++|++. ++...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~-~~---~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA-LT---LTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-EE---EEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred EEEeCCCCCeEEEEEECCCCc-EE---Eee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence 344457799999999753111 11 111 23477789999999999999888876 899999986 33211
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s 404 (755)
.+..+..+. .+..++|+|++ +|++
T Consensus 76 ------------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~~l~~ 100 (343)
T 1ri6_A 76 ------------------------------------------------------FAAESALPG-SLTHISTDHQGQFVFV 100 (343)
T ss_dssp ------------------------------------------------------EEEEEECSS-CCSEEEECTTSSEEEE
T ss_pred ------------------------------------------------------eccccccCC-CCcEEEEcCCCCEEEE
Confidence 011222222 67789999999 6666
Q ss_pred Ee-CCCcEEEEeC---CCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCC-CeEEE-----e-ccCCcc
Q 004410 405 SS-ADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRR-CQVVD-----Y-TDIREI 472 (755)
Q Consensus 405 ~s-~Dg~V~iWdl---~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~-~~~~~-----~-~~~~~~ 472 (755)
++ .++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ ++... . ......
T Consensus 101 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 179 (343)
T 1ri6_A 101 GSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 179 (343)
T ss_dssp EETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred EecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCC
Confidence 65 4889999999 4445556666666799999999 888887777 899999999987 65432 1 223457
Q ss_pred eEEEEEccCCCeEEEEe-CCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCcEEEE
Q 004410 473 VSAVCYCPDGKGGIVGT-MTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSLVRVL 548 (755)
Q Consensus 473 V~~v~~spdg~~la~gs-~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iw 548 (755)
+..++|+|+|++|++++ .++.|.+||+.. +.+..................+..++|+| ++++|++ ...++.|.+|
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVF 258 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEE
Confidence 88999999999776655 789999999953 43321111111110111234677899999 7776664 4579999999
Q ss_pred ECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 549 CGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 549 d~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
+... ...........+ ..+..++|+|+|++|++++ .|+.|.+|+++
T Consensus 259 d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9873 222222221223 3488999999999998888 68999999665
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=230.00 Aligned_cols=283 Identities=11% Similarity=0.033 Sum_probs=206.9
Q ss_pred ccCcceeecCCCCeeEEeeC-CC-----eEEEEECCCCcccccccccceeeeccc------------------------c
Q 004410 236 DRHGSATLKPGDHELTLGQR-MR-----RVRVHPVKKQSRELSSLYTGQEFLAHE------------------------G 285 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-dg-----~V~Vw~~~~~~~~~~~~~~~~~l~~H~------------------------~ 285 (755)
..+..++|+|||++|++++. ++ .|++|+..++... +.+..|. .
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-------LLVDSKVVLPGTETLSDEEKARRERQRIAAMT 109 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-------EEECGGGTC--------------------CCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-------Eccchhhcccccccccchhhhhhhhhhhcccc
Confidence 34667999999999999988 88 8999998765421 1122221 3
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.|.+++|||||++|++++. +.|++||+.++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~---------------------------------------------- 142 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA---------------------------------------------- 142 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT----------------------------------------------
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc----------------------------------------------
Confidence 4789999999999999886 89999999766100
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEec-CCc-------------
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSH-NNY------------- 430 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h-~~~------------- 430 (755)
.+..+..|...+..++|+||| .|++++ ++.|++||+.+++....... ...
T Consensus 143 --------------~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~ 207 (741)
T 2ecf_A 143 --------------AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEE 207 (741)
T ss_dssp --------------SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHH
T ss_pred --------------eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeec
Confidence 011234566789999999999 777776 56999999999887765542 221
Q ss_pred ---EEEEEEeeCCCCEEEEEeCCC---------------------------------cEEEEEcCC-CeEEEec---cCC
Q 004410 431 ---VTSVAFNPVDDNYFISGSIDG---------------------------------KVRIWEVRR-CQVVDYT---DIR 470 (755)
Q Consensus 431 ---V~~i~fsp~d~~~l~sgs~Dg---------------------------------~V~iwdl~~-~~~~~~~---~~~ 470 (755)
+..++|+| |+++|++++.|+ .|++||+.+ ++..... .+.
T Consensus 208 ~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 286 (741)
T 2ecf_A 208 MDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD 286 (741)
T ss_dssp SCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS
T ss_pred cccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc
Confidence 47899999 999999988776 789999988 8766443 466
Q ss_pred cceEEEEEccCCCeEEEEeC-----CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 471 EIVSAVCYCPDGKGGIVGTM-----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~-----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
..+..++| |||+.|++++. +..|++||+.+++........ .......+..++|+| +++++++++.|+.+
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~ 360 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET----SPTWVPLHNSLRFLD-DGSILWSSERTGFQ 360 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE----CSSCCCCCSCCEECT-TSCEEEEECTTSSC
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC----CCCcCCcCCceEECC-CCeEEEEecCCCcc
Confidence 78999999 99999998764 567999999998765433221 111111345789999 77788999999988
Q ss_pred EEEECCcceeeEEEeeeccCCceEEE-EEecCCCEEEEE-eCCC--cEEEEEcCC
Q 004410 546 RVLCGENVVGKFKASAFRVAGSQMFA-TFTSDGKHVVSP-SEDS--NIYIWNYSN 596 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~~~~~~v~~l-~fspdg~~L~sg-s~Dg--~I~iWd~~~ 596 (755)
+||....... ......+...+..+ .|+|+|++|+.. +.|+ .++||++..
T Consensus 361 ~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 361 HLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8887652222 22224566778777 599999987654 4455 899999864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=198.50 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=193.9
Q ss_pred eeecCCCCe-eEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCee
Q 004410 241 ATLKPGDHE-LTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~~-lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~ 318 (755)
+.|.+++.. +++...++.|.+||...... ...+..+...+ .++|+|||++|++++. ++.|.+||+.+++.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence 456666664 66778899999999875442 12233455566 9999999997766655 88999999977653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
. ...+..+.....+++|+|
T Consensus 75 ~-------------------------------------------------------------~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 75 K-------------------------------------------------------------VVAIQEGQSSMADVDITP 93 (331)
T ss_dssp E-------------------------------------------------------------EEEEEECSSCCCCEEECT
T ss_pred e-------------------------------------------------------------EEecccCCCCccceEECC
Confidence 0 111223444444589999
Q ss_pred CC-eEEEEeCCC---cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCc-EEEEEcCCCeEE-----Eec
Q 004410 399 NG-FLLSSSADK---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGK-VRIWEVRRCQVV-----DYT 467 (755)
Q Consensus 399 ~~-~L~s~s~Dg---~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~-V~iwdl~~~~~~-----~~~ 467 (755)
++ +|+++..++ .|.+||+.+++.+..+.....+.+++|+| +++ ++++...++. |.+|++.....+ ...
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 172 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI 172 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccc
Confidence 99 677444442 89999999999999888778889999999 776 4555566688 999998753221 222
Q ss_pred cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeE---eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQL---YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-AD 542 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~---~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~D 542 (755)
.....+..++|+|+|+++++++ .++.|++||+.+++. +.... ....+..++|+| ++++++++. .+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~sp-dg~~l~v~~~~~ 242 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---------TNNLPGTIVVSR-DGSTVYVLTEST 242 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---------CSSCCCCEEECT-TSSEEEEECSSE
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---------CCCCCceEEECC-CCCEEEEEEcCC
Confidence 4455689999999999776655 688999999998876 32211 235677899999 788666554 57
Q ss_pred CcEEEEECCcceeeEEEeeecc----C---CceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRV----A---GSQMFATFTSDGKHVVSPSE-DSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~----~---~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~~~ 598 (755)
+.|.+||..+...........+ . .....++|+|||++|++++. ++.|.+||+....
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 8899999887554322211111 1 12245899999999876665 5699999997654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-20 Score=230.15 Aligned_cols=333 Identities=10% Similarity=0.017 Sum_probs=232.5
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCC------CeEEEEECCCCcccccccccceeeecccccE-------EEEEEecCC
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRM------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSI-------LTMKFSLDG 296 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~d------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V-------~~l~fspdg 296 (755)
.+..|...+.+++|||||++||+++.+ ..|++|+...+. .+.+..|...+ ..++|+|||
T Consensus 47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 47 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTC
T ss_pred EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCC
Confidence 344556667789999999999987543 478999976532 23467788888 999999999
Q ss_pred CEEEEEcCC------CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEee-----------------------
Q 004410 297 QYLASGGED------GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDV----------------------- 347 (755)
Q Consensus 297 ~~LaSgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 347 (755)
+++++++.+ ..|++|++.++....... . ....+.|.+ + ++....
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~~sp-G---~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHILFAD-G---RRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEEEEET-T---EEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--CcceeeeCC-C---EEEEeccCCCccccccccCCCcCCEEEEC
Confidence 988888754 358888887776432211 1 112223332 1 111100
Q ss_pred cCccee----------------eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCc
Q 004410 348 DKEKID----------------KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT 410 (755)
Q Consensus 348 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~ 410 (755)
...... ....+....++...+|.. .........+..|. .+..++|+|+| .|+++ .++.
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~---~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~ 266 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYST---DLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS 266 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEE---ETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTE
T ss_pred CCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEE---eCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCE
Confidence 000000 000111111222222211 11123344555554 46677999999 67766 5899
Q ss_pred EEEEeCCCCeEEEEEe------------cCCcEEEEEEe-eCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc-ceEEE
Q 004410 411 VRLWQVGIDRCLRVFS------------HNNYVTSVAFN-PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE-IVSAV 476 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~------------h~~~V~~i~fs-p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~-~V~~v 476 (755)
|++||+...+.. .+. |...+.+++|+ | ++++|++++ ++.|++|++.++....+..+.. .+..+
T Consensus 267 i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1045)
T 1k32_A 267 IYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRR 343 (1045)
T ss_dssp EEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEE
T ss_pred EEEecCCceEee-eeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEee
Confidence 999999555443 432 23478999999 9 999888887 8899999999988887777777 89999
Q ss_pred EEccCCCeEEEEeCCCcEE-EEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 477 CYCPDGKGGIVGTMTGNCR-FYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~-iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+|+ ||+.|+.++.++.+. +||+.++.... + ..+...+..++|+| ++++|++++.++.|++||..+...
T Consensus 344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-----l----~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-----F----EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp CSS-SEEEEEEEETTEEEEEEEETTTCCEEE-----C----CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE
T ss_pred eEc-CCCeEEEEECCCceEEEEECCCCCceE-----e----cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCce
Confidence 999 999999999888898 99998876432 1 13456899999999 999999999999999999987654
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEEeCCC----------cEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSPSEDS----------NIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg----------~I~iWd~~~~~ 598 (755)
.... ..|...+..++|+|||++|++++.++ .|++||+.+++
T Consensus 413 ~~~~--~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 413 TVIE--RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEE--ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEec--cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 4433 46788889999999999999887754 89999998875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=196.08 Aligned_cols=254 Identities=15% Similarity=0.117 Sum_probs=188.1
Q ss_pred EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCc
Q 004410 252 LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPS 330 (755)
Q Consensus 252 sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~ 330 (755)
.++.++.|++|+...... ..+..|.+.|.+++|+|||++|++++ ++.|++||+.+ ++....
T Consensus 17 ~~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------- 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------- 78 (297)
T ss_dssp -CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------
T ss_pred CCCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------
Confidence 345789999999875432 23566889999999999999999987 78999999977 543211
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCCEEEEEEcCCC-eEEEEe--
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEVLDLSWSKNG-FLLSSS-- 406 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~s~~~-~L~s~s-- 406 (755)
..+| ...|.+++|+|++ .|++++
T Consensus 79 -----------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~ 105 (297)
T 2ojh_A 79 -----------------------------------------------------DTGFATICNNDHGISPDGALYAISDKV 105 (297)
T ss_dssp -----------------------------------------------------CCTTCCCBCSCCEECTTSSEEEEEECT
T ss_pred -----------------------------------------------------ccccccccccceEECCCCCEEEEEEeC
Confidence 1122 3567889999999 888887
Q ss_pred CCCcEEEE--eCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEc--CCCeEEEeccCCcceEEEEEccC
Q 004410 407 ADKTVRLW--QVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEV--RRCQVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iW--dl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl--~~~~~~~~~~~~~~V~~v~~spd 481 (755)
.++.+.|| ++.+++ ...+.+...+..++|+| ++++|+ ++..++.++||++ .+++...+..+...+.+++|+|+
T Consensus 106 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d 183 (297)
T 2ojh_A 106 EFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPD 183 (297)
T ss_dssp TTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTT
T ss_pred CCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCC
Confidence 33445555 555555 34454555699999999 888776 7888999999985 55667777778889999999999
Q ss_pred CCeEEEEe-CCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----------CcEEEE
Q 004410 482 GKGGIVGT-MTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----------SLVRVL 548 (755)
Q Consensus 482 g~~la~gs-~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----------g~I~iw 548 (755)
|+.|++++ .++.+++|++. .+..... ...+...+..++|+| ++++|++++.+ +.|.+|
T Consensus 184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 184 GRWIYFNSSRTGQMQIWRVRVDGSSVER--------ITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCEEE--------CCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred CCEEEEEecCCCCccEEEECCCCCCcEE--------EecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 99888766 58899999875 3322221 122345788999999 88888887765 569999
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
|..+...........|...+..++|+|+|++|++++.|.
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 988755444333346778899999999999999887664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=198.09 Aligned_cols=271 Identities=11% Similarity=0.115 Sum_probs=198.2
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeee-cccc-cEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeec
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEG-SILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~-~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
++|++++.++.|.+||...... .+.+. ++.. .+..++|+|||++| +++..++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcE-------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence 4788999999999999865432 12222 2222 47889999999765 5566788999999988765543321
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
... ..|...+..++|+|++ +|+
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCc---------------------------------------------------------ccccccccceEECCCCCEEE
Confidence 100 0011234568999999 777
Q ss_pred EEe------------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 404 SSS------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 404 s~s------------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
++. .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.+++.+.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 775 57999999999999988887777889999999 88888777 6899999999998774333222
Q ss_pred ceEEEEEccCCCeEEEEeCCC------------------------cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 472 IVSAVCYCPDGKGGIVGTMTG------------------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg------------------------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
....+.|+|+|+.+++....+ .|.+||+.+++.. .... ..+...+.+++
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~~ 247 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV------RIMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE------EECSSCEEEEE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec------CCCCCceeeEE
Confidence 112347899998776654333 4689999998765 2221 12335788999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|+| ++++++++ ++.|.+||..+....... .....+.+++|+|+|++|++++.|+.|++||+.+++
T Consensus 248 ~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRV---PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECC-CCCEEEEe--CCeEEEEECCCCcCccee---cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 999 88888887 799999998875443332 233567899999999999999999999999998876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=193.20 Aligned_cols=274 Identities=11% Similarity=0.116 Sum_probs=183.5
Q ss_pred CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---CCcEEEEEccCCeeeeeeecCCCCCce
Q 004410 255 RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---DGTVRVWKVIEHERLDGFDVQDTDPSC 331 (755)
Q Consensus 255 ~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~ 331 (755)
.++.|.+|.+......+..+ ....+...+..++|+|||+ |++++. ++.|++|++.++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 35678888876433222211 2234556788899999999 555544 689999999665421
Q ss_pred eEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe-CCC
Q 004410 332 LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS-ADK 409 (755)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s-~Dg 409 (755)
.+..+..+...+..++|+|++ +|++++ .++
T Consensus 77 ------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 77 ------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp ------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred ------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 012223355667889999999 777777 789
Q ss_pred cEEEEeCC-CC--eEEEEEecC----------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC-CCeEEEe----ccCCc
Q 004410 410 TVRLWQVG-ID--RCLRVFSHN----------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVR-RCQVVDY----TDIRE 471 (755)
Q Consensus 410 ~V~iWdl~-s~--~~~~~~~h~----------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~-~~~~~~~----~~~~~ 471 (755)
.|.+|++. .+ ..+..+.+. ..+.+++|+| +++++++...++.|++|++. ++++... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 99999996 33 333333322 2488999999 88877777778999999998 5544321 22234
Q ss_pred ceEEEEEccCCCeEEE-EeCCCcEEEEECCC--CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEE
Q 004410 472 IVSAVCYCPDGKGGIV-GTMTGNCRFYDIKD--NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRV 547 (755)
Q Consensus 472 ~V~~v~~spdg~~la~-gs~dg~I~iwD~~~--~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~i 547 (755)
.+..++|+|||++|++ +..++.|.+|++.. +++.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999997766 45678999999874 55432211111111111124688999999 77766 55667899999
Q ss_pred EECCcc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-CcEEEEEcC
Q 004410 548 LCGENV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-SNIYIWNYS 595 (755)
Q Consensus 548 wd~~~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-g~I~iWd~~ 595 (755)
|++... ..........+...+..++|+|||++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 998632 222222223345567899999999999888765 899999664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=219.41 Aligned_cols=280 Identities=10% Similarity=0.065 Sum_probs=196.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecCCCEEEEEcCC---------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGED--------- 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspdg~~LaSgs~D--------- 305 (755)
..+++|+|||+++++ +.||+|++|+..++.. .+.+.+|.. .|.+++|||||++||+++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecce
Confidence 456899999998776 6899999999765432 233445554 49999999999999999765
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++||+.+++. ..+ ....
T Consensus 91 ~~i~~~d~~~~~~-~~l-----------------------------------------------------------~~~~ 110 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSL-----------------------------------------------------------DPPE 110 (723)
T ss_dssp SEEEEEESSSCCC-EEC-----------------------------------------------------------CCTT
T ss_pred eeEEEEECCCCce-Eec-----------------------------------------------------------cCCc
Confidence 6788999987753 111 1112
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCc------------------EEEEEEeeCCCCEEE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNY------------------VTSVAFNPVDDNYFI 445 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~------------------V~~i~fsp~d~~~l~ 445 (755)
+|...+..++|+||| .|++++. +.|++||+.+++...... +... +.+++|+| |+++|+
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la 188 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLA 188 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEE
T ss_pred cccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEE
Confidence 455567889999999 8887776 799999999988776654 2332 37899999 999999
Q ss_pred EEeCCC----------------------------------cEEEEEcCCCeE-EEeccC------CcceEEEEEccCCCe
Q 004410 446 SGSIDG----------------------------------KVRIWEVRRCQV-VDYTDI------REIVSAVCYCPDGKG 484 (755)
Q Consensus 446 sgs~Dg----------------------------------~V~iwdl~~~~~-~~~~~~------~~~V~~v~~spdg~~ 484 (755)
+++.|+ .|++||+.+++. ..+..+ ...+..++|+|||+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 887653 799999998874 344433 567899999999998
Q ss_pred EEEEeCC----CcEEEEECCCCeEeeeeeEEecccccCCCCCe----EEEEEcCCCCCEEEE--EECCC------cEEEE
Q 004410 485 GIVGTMT----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI----TGFQFSPSDPSKVIV--TSADS------LVRVL 548 (755)
Q Consensus 485 la~gs~d----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I----~~v~fsp~d~~~l~s--~s~Dg------~I~iw 548 (755)
|++.... ..|++||+.+++........ +...+ ..++|+| +++.|+. +..++ .|.+|
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~ 340 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDE-------SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVS 340 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEE-------CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEec-------cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEE
Confidence 8776543 56999999988765432211 11122 3679999 6665543 45666 46667
Q ss_pred E-CCccee--eEEEeeeccCCceEE-EEEecCCCEEEEEeCC---CcEEEEEcCCC
Q 004410 549 C-GENVVG--KFKASAFRVAGSQMF-ATFTSDGKHVVSPSED---SNIYIWNYSNQ 597 (755)
Q Consensus 549 d-~~~~~~--~~~~~~~~~~~~v~~-l~fspdg~~L~sgs~D---g~I~iWd~~~~ 597 (755)
| ...... .... ......+.. ++|+|||++|+..+.+ +.++||+++..
T Consensus 341 d~~~~~~~~~~~~l--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 341 SSQPNSSNDNIQSI--TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSCCSSSCCCCBS--CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eccCCCCccceeEe--ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 6 232220 1111 222333444 6999999999876665 78999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-19 Score=189.74 Aligned_cols=276 Identities=9% Similarity=0.056 Sum_probs=202.0
Q ss_pred ccCcceeecCCCCeeEEeeC-------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCc
Q 004410 236 DRHGSATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGT 307 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~-------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~ 307 (755)
.....++++|+++.+++++. ++.|.+||...... .+.+. +...+..++|+|+|++| ++...++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------TQAIH-NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------EEEEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------EEEEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence 34556999999998887763 56899999765432 12222 23447789999999955 45566899
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+||+.+++.+..+....... + -...
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~--------------------------------------------------~---~~~~ 139 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKR--------------------------------------------------T---EEVR 139 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCC--------------------------------------------------C---SSCC
T ss_pred EEEEeCCCCeeEEEEecCCCcc--------------------------------------------------c---cccC
Confidence 9999998887655443211100 0 0001
Q ss_pred CCCEEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s--~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...+.+++|+|++ .+++++ .++.|.+||+.+++.+..+. +...+.+++|+| +++++++++.++.|.+||+.+++.
T Consensus 140 ~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 140 PLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp CCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeE
Confidence 1236789999998 566555 47899999999999999887 667789999999 999999999999999999999987
Q ss_pred EEecc-----CCcceEEEEEccCCCeEEEEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 464 VDYTD-----IREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 464 ~~~~~-----~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+.... +...+..++|+|+|+++++++.+ +.|.+||+.+++....... .....++|+| ++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~~~~s~-dg~~l~ 287 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA----------PESLAVLFNP-ARNEAY 287 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC----------SSCCCEEEET-TTTEEE
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------CCCceEEECC-CCCEEE
Confidence 74332 34568889999999988777654 8999999999887654331 1124689999 677555
Q ss_pred EEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 538 VTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 538 s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
++. .++.|.+||..+....... .....+..++|+|||++|+.+..++
T Consensus 288 v~~~~~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYKVVKTF---DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE---ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEECCCCeEEEEE---ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 555 7899999998876544333 2345778999999999887776553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=216.66 Aligned_cols=290 Identities=12% Similarity=0.106 Sum_probs=201.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++|+|| +.++.+ .++.|++|+...+.. ..+..|.+.+.+++|||||++||++ .|+.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 34667999999 655555 359999999865431 2344567778899999999999995 689999999987
Q ss_pred -----CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 316 -----HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 316 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
++........... + .+ +.+ ....+...
T Consensus 151 ~~~~~g~~~~~~~~~~~~-------------------------------------~-~~--------g~~--~~~ee~~~ 182 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTET-------------------------------------L-VY--------GQA--VHQREFGI 182 (706)
T ss_dssp TTSCCCCCEESCSCCBTT-------------------------------------E-EE--------SSC--CGGGCTTC
T ss_pred ccccCCCcEEeccCCCCC-------------------------------------e-Ec--------ccc--hhhhhcCC
Confidence 5533211110000 0 00 000 11223345
Q ss_pred EEEEEEcCCC-eEEEEe---------------------------------CCCcEEEEeCCCCeEEEEE---ecCCcEEE
Q 004410 391 VLDLSWSKNG-FLLSSS---------------------------------ADKTVRLWQVGIDRCLRVF---SHNNYVTS 433 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s---------------------------------~Dg~V~iWdl~s~~~~~~~---~h~~~V~~ 433 (755)
+.+++|+||| +|++++ .+..|++||+.+++..... .|...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 6789999999 888877 4467999999999876655 36678999
Q ss_pred EEEeeCCCCEEEEEeCCC-----cEEEEEcCCC-eEEEec--cCCc---ceEEEEEcc--CCCeEEEEeCCCcEEEEECC
Q 004410 434 VAFNPVDDNYFISGSIDG-----KVRIWEVRRC-QVVDYT--DIRE---IVSAVCYCP--DGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~-~~~~~~--~~~~---~V~~v~~sp--dg~~la~gs~dg~I~iwD~~ 500 (755)
++|+| ++++|++++.++ .|++||+.++ ...... .... .+..++|+| ||++|+++..+|.++||++.
T Consensus 263 ~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 263 LSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 99999 999999888776 8999999998 444332 1221 246789999 99999999999999998876
Q ss_pred -CCeEeeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEEC-CC----cEEEEECCcceeeEEEeeeccCCceEEEEE
Q 004410 501 -DNQLYQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSA-DS----LVRVLCGENVVGKFKASAFRVAGSQMFATF 573 (755)
Q Consensus 501 -~~~~~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~-Dg----~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f 573 (755)
++..... + ..+...+.. ++|+| +++.|+.++. ++ .|..||..+.. ... ..+...+..++|
T Consensus 342 ~~~~~~~~----l----~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~--l~~~~~~~~~~~ 408 (706)
T 2z3z_A 342 TTGRLIRQ----V----TKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK--TKD--LTPESGMHRTQL 408 (706)
T ss_dssp TTSCEEEE----C----CCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC--CEE--SCCSSSEEEEEE
T ss_pred CCCCEEEe----c----CCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC--cee--ccCCCceEEEEE
Confidence 4433321 1 123445766 79999 7776665554 44 56666665533 222 336677899999
Q ss_pred ecCCCEEEEEeCC----CcEEEEEcCCCC
Q 004410 574 TSDGKHVVSPSED----SNIYIWNYSNQD 598 (755)
Q Consensus 574 spdg~~L~sgs~D----g~I~iWd~~~~~ 598 (755)
+|||++|+.+..+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999998876544 469999998775
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=222.89 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=209.6
Q ss_pred eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 279 ~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
.+.+|.+.+.++.|+++ .++++++.|+.++||.+.. +.....+..+. ......|.+++...+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~------------- 262 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS------------- 262 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-------------
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-------------
Confidence 45678999999999998 7777888899999998764 33333333322 23344555554322111
Q ss_pred eeecCCceEEEeCCcceeccCccceEecC-----------CCCCEEEEEEc-CCC-eEEEEeCCCcEEEEeCCCCeEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG-----------HSSEVLDLSWS-KNG-FLLSSSADKTVRLWQVGIDRCLRV 424 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------h~~~V~~l~~s-~~~-~L~s~s~Dg~V~iWdl~s~~~~~~ 424 (755)
.+..+.+|+... ..+..+.+ |...+..++|+ |+| .|++++ ++.|++|++..+.....
T Consensus 263 ----~~~~i~~~d~~~-----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 263 ----KGGSIYIFNPDT-----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp ----ETTEEEEECTTT-----CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC
T ss_pred ----eCCEEEEecCCc-----eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc
Confidence 133444444311 11222222 45578999999 999 777777 88999999998887665
Q ss_pred EecCC-cEEEEEEeeCCCCEEEEEeCCCcEE-EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 425 FSHNN-YVTSVAFNPVDDNYFISGSIDGKVR-IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 425 ~~h~~-~V~~i~fsp~d~~~l~sgs~Dg~V~-iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
..|.. .+..++|+ +++.|+.++.++.|. +||+.+++...+..+...+..++|+|||++|++++.++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 56777 89999998 788888888888899 999999887777777788999999999999999999999999999988
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC----------cEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS----------LVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
+..... ..+...+..++|+| ++++|++++.++ .|++||..+.. .. ....+...+..++
T Consensus 411 ~~~~~~--------~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~--~l~~~~~~~~~~~ 478 (1045)
T 1k32_A 411 KPTVIE--------RSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF--AATTENSHDYAPA 478 (1045)
T ss_dssp CEEEEE--------ECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE--ECSCSSSBEEEEE
T ss_pred ceEEec--------cCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE--EeeCCCcccCCce
Confidence 765421 12556788999999 888888877654 89999988754 22 2256777888999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
|+|||++|++++.++...+|+....
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EcCCCCEEEEEecccCCcCcchhcc
Confidence 9999999999999999999987643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-19 Score=204.70 Aligned_cols=294 Identities=12% Similarity=0.089 Sum_probs=205.9
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEEC--CCCcccccccccceeeecccccEEEEEEec----CCCEEEEEcC-CCcEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPV--KKQSRELSSLYTGQEFLAHEGSILTMKFSL----DGQYLASGGE-DGTVRV 310 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~--~~~~~~~~~~~~~~~l~~H~~~V~~l~fsp----dg~~LaSgs~-Dg~I~v 310 (755)
+..++|+|||++|++++.+++|++||+ .+.. ..+++. +...+..++|+| ||++|++++. +++|.|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 456899999999999999999999998 3322 223444 345679999999 9999999985 899999
Q ss_pred EEccCCeeeeeeecCCC-----------CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 311 WKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
||..+++.+..+..... .+..+.+.+.+.. .......++.+.+++.......
T Consensus 253 ~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~---------------~~vs~~~~g~i~vvd~~~~~~l-- 315 (543)
T 1nir_A 253 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE---------------FIVNVKETGKVLLVNYKDIDNL-- 315 (543)
T ss_dssp EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE---------------EEEEETTTTEEEEEECTTSSSC--
T ss_pred EeccccccceeecccCcccCccccccCCceEEEEECCCCCE---------------EEEEECCCCeEEEEEecCCCcc--
Confidence 99999998887765321 1222333322211 1223334455555554332111
Q ss_pred cceEecCCCCCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEe-CCC
Q 004410 380 PLHEFQGHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-IDG 451 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs-~Dg 451 (755)
.+..+ .+...+.++.|+|++ +|+++ ..+++|.+||+.+++++..+. |......+ ++|..+.+++++. .|+
T Consensus 316 ~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~ 393 (543)
T 1nir_A 316 TVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG 393 (543)
T ss_dssp EEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred eeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc
Confidence 01122 356678889999999 55554 568999999999999998885 55444444 5773366777775 589
Q ss_pred cEEEEEcCC-------CeEE-EeccCCcceEEEEEccCCCeEEEEe-------CCCcEEEEECCCCeEeee-eeEEeccc
Q 004410 452 KVRIWEVRR-------CQVV-DYTDIREIVSAVCYCPDGKGGIVGT-------MTGNCRFYDIKDNQLYQQ-NQICLQGK 515 (755)
Q Consensus 452 ~V~iwdl~~-------~~~~-~~~~~~~~V~~v~~spdg~~la~gs-------~dg~I~iwD~~~~~~~~~-~~~~~~~~ 515 (755)
+|.+||+.+ .+++ .+..+...+..++++|+|++|++++ .+++|.+||+.+++...+ +.+.-...
T Consensus 394 ~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~ 473 (543)
T 1nir_A 394 SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 473 (543)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence 999999988 6776 4556667788999999999999987 377999999998876521 11100000
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEE-----CCCcEEEEECCcceeeEEE
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTS-----ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s-----~Dg~I~iwd~~~~~~~~~~ 559 (755)
...+...+..+.|+| +++.++++. .++.|.|||..+.......
T Consensus 474 ~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 474 LGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 123467899999999 888887663 3799999999987665544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=215.21 Aligned_cols=295 Identities=10% Similarity=0.074 Sum_probs=202.3
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+..++|+|||++|++++. +.|++|++..+... ..+.+..|...+.+++|||||++||+++ ++.|++||+.+
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA-----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT-----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc-----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 34667999999999999887 99999998764100 1123566788899999999999999987 46899999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++........... +. .+ ...+ + .......+..++
T Consensus 182 g~~~~~~~~~~~~---~~-------------------------~g----------~~~~------v--~~~~~~~~~~~~ 215 (741)
T 2ecf_A 182 GRQMQLTADGSTT---IG-------------------------NG----------IAEF------V--ADEEMDRHTGYW 215 (741)
T ss_dssp TEEEECCCCCCSS---EE-------------------------ES----------CCCH------H--HHHHSCCCCSEE
T ss_pred CCEEEeccCCccc---ee-------------------------cc----------ccce------e--eeeccccccceE
Confidence 7643221110000 00 00 0000 0 000112356799
Q ss_pred EcCCC-eEEEEeCCC---------------------------------cEEEEeCCC-CeEEEEE---ecCCcEEEEEEe
Q 004410 396 WSKNG-FLLSSSADK---------------------------------TVRLWQVGI-DRCLRVF---SHNNYVTSVAFN 437 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg---------------------------------~V~iWdl~s-~~~~~~~---~h~~~V~~i~fs 437 (755)
|+||| .|++++.|+ .|++||+.+ ++..... .|...+..++|
T Consensus 216 ~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (741)
T 2ecf_A 216 WAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW- 294 (741)
T ss_dssp ECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-
T ss_pred ECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-
Confidence 99999 888887765 799999998 8766554 36788999999
Q ss_pred eCCCCEEEEEeC-----CCcEEEEEcCCCeEEEeccCCc-----ceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEee
Q 004410 438 PVDDNYFISGSI-----DGKVRIWEVRRCQVVDYTDIRE-----IVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQ 506 (755)
Q Consensus 438 p~d~~~l~sgs~-----Dg~V~iwdl~~~~~~~~~~~~~-----~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~ 506 (755)
| ++++|++++. +..|++||+.+++......... .+..++|+|||++++++..+|.++||.+. .+. ..
T Consensus 295 p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 295 R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 9 9998887664 5679999999988764433222 35688999999988999999987777665 222 22
Q ss_pred eeeEEecccccCCCCCeEEE-EEcCCCCCEEE-EEECCC--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGF-QFSPSDPSKVI-VTSADS--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v-~fsp~d~~~l~-s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
. ...+...+..+ .|+| +++.|+ +++.++ .++||+.......... ......+..++|+|||++|+.
T Consensus 373 ~--------l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~--l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 373 A--------LTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR--LSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp E--------SCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE--CCCSCSEEEEEECTTSSEEEE
T ss_pred e--------eeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee--cccCCCceEEEECCCCCEEEE
Confidence 1 12234567777 5999 666665 455555 8999987532221222 223567889999999999887
Q ss_pred EeCC----CcEEEEEcCCC
Q 004410 583 PSED----SNIYIWNYSNQ 597 (755)
Q Consensus 583 gs~D----g~I~iWd~~~~ 597 (755)
...+ ..+++|+...+
T Consensus 442 ~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 442 SWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTEEEEEEEEETTSC
T ss_pred EecCCCCCCeEEEEEcCCC
Confidence 6544 46999998654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-19 Score=196.79 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=153.8
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcc---------cccccccceeeecccccEEEEEEecCCCEEE----EEc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSR---------ELSSLYTGQEFLAHEGSILTMKFSLDGQYLA----SGG 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~---------~~~~~~~~~~l~~H~~~V~~l~fspdg~~La----Sgs 303 (755)
....+++++++.++++++.++ ++||+...... .+..... .....|.+.|.+++|+|+|++|| +|+
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 456699999999999999888 89987432110 0000111 11234677899999999999999 888
Q ss_pred CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 304 EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 304 ~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
.|+.|+|||+.++.... ...... -..+..
T Consensus 116 ~d~~v~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~ 144 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKL 144 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEEC
T ss_pred CCceEEEEEccccccCC-----cCCcce----------------------------------------------eeeeec
Confidence 99999999986541000 000000 001234
Q ss_pred ecCCCCCEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 384 FQGHSSEVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
+.+|...|.+++|+|+ + +|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||+|++||++.
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~ 223 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL 223 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC
Confidence 5679999999999998 5 8999999999999999998766444 5889999999999 899999999999999999983
Q ss_pred CeEEEecc-------CCcceEEEEEccCCCeEEE-EeCCCc------EEEEECCCC
Q 004410 461 CQVVDYTD-------IREIVSAVCYCPDGKGGIV-GTMTGN------CRFYDIKDN 502 (755)
Q Consensus 461 ~~~~~~~~-------~~~~V~~v~~spdg~~la~-gs~dg~------I~iwD~~~~ 502 (755)
.....+.. |...|.+++|++++.++++ ...+|. +++|++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 32222222 2237999999998877755 334433 899999865
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=207.72 Aligned_cols=267 Identities=12% Similarity=0.044 Sum_probs=196.9
Q ss_pred cCcceeecCCCCeeEEeeC-CCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcC---CCcEEEE
Q 004410 237 RHGSATLKPGDHELTLGQR-MRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGE---DGTVRVW 311 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~-dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~---Dg~I~vW 311 (755)
.+.+++|+|||+.||+++. +|+++||++..+. .+.+..|. ..|..++|+|| ++|++++. +...+||
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC--------cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 4667999999999999877 9999999963322 12344455 68999999999 78887765 5567777
Q ss_pred EccC--CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 312 KVIE--HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 312 dv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
.+.. .... . .+..+ .
T Consensus 94 ~~~~~~~g~~-------------------------------------------------------------~-~l~~~-~ 110 (582)
T 3o4h_A 94 KVNTSRPGEE-------------------------------------------------------------Q-RLEAV-K 110 (582)
T ss_dssp EEETTSTTCC-------------------------------------------------------------E-ECTTS-C
T ss_pred EEeccCCCcc-------------------------------------------------------------c-cccCC-C
Confidence 6543 1100 0 01111 1
Q ss_pred CEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEEcCCCeE
Q 004410 390 EVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVRRCQV 463 (755)
Q Consensus 390 ~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D----g~V~iwdl~~~~~ 463 (755)
.+...+|+|++ .+++.+.++.+.+||+.++++.....+.. .+++|+| |+++|++++.+ +.|++||+.+++.
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 23345777776 44455555556699999998877766554 8899999 99999988877 7899999999988
Q ss_pred EEeccCCcceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE--------EcCCCC
Q 004410 464 VDYTDIREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ--------FSPSDP 533 (755)
Q Consensus 464 ~~~~~~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~--------fsp~d~ 533 (755)
..+..+...+..++|+|||+.|+++..+| .|++||+.+++.. .. ..+...+..+. |+| ++
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~sp-dg 257 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLP-DG 257 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECT-TS
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------cCCCcChhhhhhccccceeEcC-CC
Confidence 88888888999999999999999888888 8999999988765 21 11223344444 999 66
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc---EEEEEcCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN---IYIWNYSN 596 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~---I~iWd~~~ 596 (755)
.++++++.++.++||+. . .... ...+.+.+++|+ +|+++++++.+.. |++|+..+
T Consensus 258 ~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 258 RLAVVARREGRSAVFID--G--ERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred cEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999999998 2 1111 234678899999 9999999888754 77777654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-18 Score=183.04 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=186.4
Q ss_pred cCCCCeeEEee----CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC----CcEEEEEccC
Q 004410 244 KPGDHELTLGQ----RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----GTVRVWKVIE 315 (755)
Q Consensus 244 spdg~~lasgs----~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D----g~I~vWdv~~ 315 (755)
.+...+++.|+ .++.|.+|.+......+..+ ..+ |...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~---~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPL---SDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEE---EEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEe---ecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 34445556663 46789999875433222211 222 66778889999999999999886 7999999865
Q ss_pred --CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 316 --HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 316 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
++.. . +.....+......
T Consensus 85 ~~g~~~-~-----------------------------------------------------------~~~~~~~~~~p~~ 104 (361)
T 3scy_A 85 EKGTLH-L-----------------------------------------------------------LNTQKTMGADPCY 104 (361)
T ss_dssp TTTEEE-E-----------------------------------------------------------EEEEECSSSCEEE
T ss_pred CCCcEE-E-----------------------------------------------------------eeEeccCCCCcEE
Confidence 2210 0 1122234455677
Q ss_pred EEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEE----EEec-----------CCcEEEEEEeeCCCCEEEEEe-CCCcEEE
Q 004410 394 LSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLR----VFSH-----------NNYVTSVAFNPVDDNYFISGS-IDGKVRI 455 (755)
Q Consensus 394 l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~----~~~h-----------~~~V~~i~fsp~d~~~l~sgs-~Dg~V~i 455 (755)
+++ ++ +|++++ .++.|.+|++.....+. .+.+ ...+.+++|+| +++++++++ .++.|++
T Consensus 105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEE
Confidence 777 55 565555 68899999997543322 1111 23468899999 888665554 5889999
Q ss_pred EEcCCCe-------E-------EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 456 WEVRRCQ-------V-------VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 456 wdl~~~~-------~-------~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++.... + .........+..++|+|||+++++++ .++.|.+||+.++.+.....+.. ...+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~---~~~~~ 258 (361)
T 3scy_A 182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA---DTVNA 258 (361)
T ss_dssp EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES---CSSCC
T ss_pred EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec---CCCCC
Confidence 9887432 1 22334455688999999999888877 68999999999876543222211 12233
Q ss_pred CCeEEEEEcCCCCCEEEEEECC--CcEEEEECCc--ceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD--SLVRVLCGEN--VVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D--g~I~iwd~~~--~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.....++|+| ++++|+++..+ +.|.+|++.. ........... ...+..++|+|||++|++++ .++.|.+|+++
T Consensus 259 ~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4578999999 88888776654 8999999862 22222222122 45678999999999998888 67899997665
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-19 Score=206.72 Aligned_cols=280 Identities=10% Similarity=0.078 Sum_probs=191.6
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-----------------ccEEEEEEecCCCEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-----------------GSILTMKFSLDGQYLA 300 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-----------------~~V~~l~fspdg~~La 300 (755)
+..+.|. |..++++..++ | +||..++..... .+..|. ..|.+++|+|| ++|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~------~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~ 96 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT------TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVV 96 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C------EEEEHHHHHTTC-----------CCCEEEEETTT-TEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE------EeechhHhhhhccchhccccccccCceeEEECCC-CeEE
Confidence 4557788 66667777777 8 999876543101 112222 46999999999 5555
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
.+. ++.|++||+.+++..
T Consensus 97 ~~~-~~~i~~~d~~~~~~~------------------------------------------------------------- 114 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVT------------------------------------------------------------- 114 (706)
T ss_dssp EEE-TTEEEEEETTTTEEE-------------------------------------------------------------
T ss_pred EEE-CCEEEEEECCCCceE-------------------------------------------------------------
Confidence 553 599999999876532
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CeEEEEEe-cCCc--------------EEEEEEeeC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-----DRCLRVFS-HNNY--------------VTSVAFNPV 439 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-----~~~~~~~~-h~~~--------------V~~i~fsp~ 439 (755)
.+..+...+.+++|+|+| .|++ ..++.|++||+.+ ++...... +... +.++.|+|
T Consensus 115 --~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 115 --YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp --EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred --EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 122344557778999999 7766 4789999999998 77665443 2222 58999999
Q ss_pred CCCEEEEEe---------------------------------CCCcEEEEEcCCCeEEEec---cCCcceEEEEEccCCC
Q 004410 440 DDNYFISGS---------------------------------IDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCPDGK 483 (755)
Q Consensus 440 d~~~l~sgs---------------------------------~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~spdg~ 483 (755)
|+++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999987 4467999999998876544 4556799999999999
Q ss_pred eEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC-CCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 484 GGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP-SDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 484 ~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp-~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
.|++++.++ .|++||+.+++....... .........+..++|+| .++++++++..|+.++||.........
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFV---ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEE---EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEE---ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 999988775 899999999832222111 00111112346789998 245688888899999999875222222
Q ss_pred EEeeeccCCceEE-EEEecCCCEEEEEeCC-C----cEEEEEcCCCC
Q 004410 558 KASAFRVAGSQMF-ATFTSDGKHVVSPSED-S----NIYIWNYSNQD 598 (755)
Q Consensus 558 ~~~~~~~~~~v~~-l~fspdg~~L~sgs~D-g----~I~iWd~~~~~ 598 (755)
.. ...+...+.. ++|+|+|+.|+.++.+ + .|+.||+.+++
T Consensus 348 ~~-l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 348 RQ-VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EE-CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred Ee-cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 21 2445666766 7999999988766554 4 67777777664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-18 Score=179.88 Aligned_cols=243 Identities=9% Similarity=0.067 Sum_probs=183.9
Q ss_pred ccccEEEEEEecCCCEEEEEcC-------CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 283 HEGSILTMKFSLDGQYLASGGE-------DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~-------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------------- 87 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------------------------- 87 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-------------------------------
Confidence 3456889999999998888774 56899999988765433221
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEecCC----
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFSHNN---- 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~h~~---- 429 (755)
...+..++|++++ .++ +...++.|.+||+.+++.+..+....
T Consensus 88 --------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 88 --------------------------------DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp --------------------------------SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred --------------------------------CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 1224568899998 454 45567999999999999988875321
Q ss_pred ------cEEEEEEeeCCCCEEEEEe--CCCcEEEEEcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECC
Q 004410 430 ------YVTSVAFNPVDDNYFISGS--IDGKVRIWEVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK 500 (755)
Q Consensus 430 ------~V~~i~fsp~d~~~l~sgs--~Dg~V~iwdl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~ 500 (755)
.+.+++|+| +++++++++ .++.|.+||+.+++.+.... +...+..++|+|+|+.|++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777665 47899999999998886555 55668899999999999999999999999999
Q ss_pred CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE
Q 004410 501 DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH 579 (755)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~ 579 (755)
+++....... ....+...+.+++|+| ++++++++.. ++.|.+||..+........ .. ....++|+|+|++
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~---~~~~~~~s~dg~~ 285 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVA-AP---ESLAVLFNPARNE 285 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEE-CS---SCCCEEEETTTTE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEE-cC---CCceEEECCCCCE
Confidence 9987654332 1112345688999999 6776666554 5999999997765444332 11 1256899999997
Q ss_pred EEEEe-CCCcEEEEEcCCCC
Q 004410 580 VVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 580 L~sgs-~Dg~I~iWd~~~~~ 598 (755)
|+.++ .++.|.+||+.+++
T Consensus 286 l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 286 AYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEEETTTTEEEEEETTTTE
T ss_pred EEEEECCCCeEEEEECCCCe
Confidence 66665 68999999998876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-18 Score=179.54 Aligned_cols=269 Identities=14% Similarity=0.185 Sum_probs=177.9
Q ss_pred eccCcceeecCCCCeeEEeeCC-CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CCcEEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRM-RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~d-g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWd 312 (755)
...+..++|+|+|++|++++.+ +.|++|++......+. ....+..+. .+..++|+|+|++|++++. ++.|.+|+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3456679999999988888876 9999999862211111 112333333 7889999999998876654 88899999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.++..... +..+. ....+.
T Consensus 113 ~~~~~~~~~-----------------------------------------------------------~~~~~-~~~~~~ 132 (343)
T 1ri6_A 113 LEDGLPVGV-----------------------------------------------------------VDVVE-GLDGCH 132 (343)
T ss_dssp EETTEEEEE-----------------------------------------------------------EEEEC-CCTTBC
T ss_pred CCCCccccc-----------------------------------------------------------ccccc-CCCCce
Confidence 853321100 11122 223477
Q ss_pred EEEEcCCC-eEEEEe-CCCcEEEEeCCC-CeEEEE----E--ecCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEcCC--
Q 004410 393 DLSWSKNG-FLLSSS-ADKTVRLWQVGI-DRCLRV----F--SHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRR-- 460 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s-~Dg~V~iWdl~s-~~~~~~----~--~h~~~V~~i~fsp~d~~~l~sg-s~Dg~V~iwdl~~-- 460 (755)
+++|+|++ .|++++ .++.|++||+.+ ++.... + .....+.+++|+| ++++++++ ..++.|.+|++..
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~ 211 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH 211 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC
Confidence 89999999 677776 899999999987 655322 2 2456789999999 88866554 4889999999953
Q ss_pred CeE--E-Eec--c-C---CcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 461 CQV--V-DYT--D-I---REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 461 ~~~--~-~~~--~-~---~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++. . ... . . ...+..++|+|+|++|+++. .++.|.+||+. ++.......+ ..+ ..+..++|
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~-~~~~~~~~ 284 (343)
T 1ri6_A 212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ------PTE-TQPRGFNV 284 (343)
T ss_dssp SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE------ECS-SSCCCEEE
T ss_pred CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee------cCC-CccceEEE
Confidence 332 1 111 1 1 23567899999999887554 78999999998 3332221111 112 23788999
Q ss_pred cCCCCCEEEEEE-CCCcEEEEECC--cceeeEEEeeeccCCceEEEEEecCC
Q 004410 529 SPSDPSKVIVTS-ADSLVRVLCGE--NVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 529 sp~d~~~l~s~s-~Dg~I~iwd~~--~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
+| ++++|++++ .++.|.+|+.. +........ ........+++|.++.
T Consensus 285 s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 285 DH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR-YAVGQGPMWVVVNAHE 334 (343)
T ss_dssp CT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEE-EECSSSCCEEEEEEEC
T ss_pred CC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccc-cccCCCCeeEEEEccc
Confidence 99 788787777 68999999554 332222221 2222445667776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-18 Score=179.83 Aligned_cols=280 Identities=10% Similarity=0.050 Sum_probs=185.7
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCe
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~ 317 (755)
.+++++++.++++++.++.|++||..+... .+.+..+. ..+..++|+|||+++ +++..++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 467889999999999999999999875432 12233222 247789999999865 455678999999998887
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
....+...... - .+...+..++|+
T Consensus 77 ~~~~~~~~~~~----------------------------------------------------~----~~~~~~~~~~~s 100 (349)
T 1jmx_B 77 NTFHANLSSVP----------------------------------------------------G----EVGRSMYSFAIS 100 (349)
T ss_dssp EEEEEESCCST----------------------------------------------------T----EEEECSSCEEEC
T ss_pred EEEEEEccccc----------------------------------------------------c----cccccccceEEC
Confidence 55433211000 0 001235568999
Q ss_pred CCC-eEEEEeCC------------CcEEEEeCCCC---eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 398 KNG-FLLSSSAD------------KTVRLWQVGID---RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 398 ~~~-~L~s~s~D------------g~V~iWdl~s~---~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
|++ +|++++.+ +.|.+||+.++ +.+..+.+...+.+++|+| +++ +++++ +.|++||+.++
T Consensus 101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~ 176 (349)
T 1jmx_B 101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTG 176 (349)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTC
T ss_pred CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCC
Confidence 999 77777755 89999999884 4445566666799999999 888 55543 44999999998
Q ss_pred eEEEeccCCc-------------------------ceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEeccc
Q 004410 462 QVVDYTDIRE-------------------------IVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGK 515 (755)
Q Consensus 462 ~~~~~~~~~~-------------------------~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~ 515 (755)
+.+....... ....+++++++.......... .+..+|..+++.... . +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~--- 250 (349)
T 1jmx_B 177 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-E--F--- 250 (349)
T ss_dssp CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE-E--E---
T ss_pred ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec-c--c---
Confidence 8764332221 345567776553221111111 122356655543221 1 1
Q ss_pred ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 516 ~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
......+..++|+|.++++++++ ++.|.+||..+....... .....+..++|+|+|++|++++.++.|++||+.
T Consensus 251 -~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 251 -ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp -EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred -ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE---cCCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 11345788999999556677777 889999999875543332 233457789999999999999889999999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
+++
T Consensus 325 ~~~ 327 (349)
T 1jmx_B 325 TLE 327 (349)
T ss_dssp TTE
T ss_pred ccc
Confidence 775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=174.74 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=148.9
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CeEEEEEe-c-CCcEEEEEEeeCCCCEEEEEeC--CCc--EEEE
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI-DRCLRVFS-H-NNYVTSVAFNPVDDNYFISGSI--DGK--VRIW 456 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s-~~~~~~~~-h-~~~V~~i~fsp~d~~~l~sgs~--Dg~--V~iw 456 (755)
..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...|.+++|+| ++++|++++. ++. |.+|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEE
Confidence 3467889999999999 677665 88999999999 87776664 3 47889999999 9999999983 344 5555
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEE-EEeCCCcEEEEECC--CCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGI-VGTMTGNCRFYDIK--DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la-~gs~dg~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.++....+..+ ..+..++|+|+|+.|+ ++..++.+++|++. ++.... ...+...+.+++|+| ++
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~s~-dg 184 (297)
T 2ojh_A 116 PSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR---------LTHGEGRNDGPDYSP-DG 184 (297)
T ss_dssp ETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE---------CCCSSSCEEEEEECT-TS
T ss_pred ECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE---------cccCCCccccceECC-CC
Confidence 5566655444433 3489999999999887 67789999999854 443321 122456789999999 77
Q ss_pred CEEEEEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----------CcEEEEEcCCCC
Q 004410 534 SKVIVTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----------SNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----------g~I~iWd~~~~~ 598 (755)
.+|++++ .++.++||+.......... ...+...+..++|+|+|++|++++.+ +.|++||+.+++
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVER-ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEE-CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEE-EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 7777666 5899999987632222221 24566788899999999999988876 569999998765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-18 Score=201.33 Aligned_cols=299 Identities=10% Similarity=0.077 Sum_probs=188.3
Q ss_pred CcceeecCCCCeeEEeeCC---------CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 238 HGSATLKPGDHELTLGQRM---------RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~d---------g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+++|||||++||+++.+ +.|.+|++..+.. ..+ ....+|...|..++|||||++||+++. +.|
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSL---DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EEC---CCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--Eec---cCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 5679999999999998764 7888999876542 111 122356666889999999999999886 799
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++.......+.... ...... + + +.. ..-.
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~-------------~~~g~~--------------~----------~------v~~-ee~~ 172 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVSTGKEGV-------------IYNGLS--------------D----------W------LYE-EEIL 172 (723)
T ss_dssp EEESSSSSCCEEEECCCBTTT-------------EEEEEC--------------C----------H------HHH-HTTS
T ss_pred EEEECCCCceEEEecCCCCCc-------------eECccc--------------c----------e------eEE-EEec
Confidence 999998876433221111000 000000 0 0 000 0001
Q ss_pred CCEEEEEEcCCC-eEEEEeCCC----------------------------------cEEEEeCCCCeEEEEEe-c-----
Q 004410 389 SEVLDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGIDRCLRVFS-H----- 427 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg----------------------------------~V~iWdl~s~~~~~~~~-h----- 427 (755)
..+.+++|+||| .|++++.|+ .|++||+.++++...+. +
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 234667777777 666665432 79999999888655553 2
Q ss_pred -CCcEEEEEEeeCCCCEEEEEeC----CCcEEEEEcCCCeEEEec--cCCcce----EEEEEccCCCeEEEE--eCCC--
Q 004410 428 -NNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRCQVVDYT--DIREIV----SAVCYCPDGKGGIVG--TMTG-- 492 (755)
Q Consensus 428 -~~~V~~i~fsp~d~~~l~sgs~----Dg~V~iwdl~~~~~~~~~--~~~~~V----~~v~~spdg~~la~g--s~dg-- 492 (755)
...+..++|+| |++++++... +..|++||+.++++.... .+...+ ..++|+|||+.|+.. ..++
T Consensus 253 ~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 253 REYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp SSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 56899999999 8988877653 357999999998876432 223333 378999999988764 4566
Q ss_pred ----cEEEEE-CCCCeE--eeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEECC---CcEEEEECCccee-eEEEe
Q 004410 493 ----NCRFYD-IKDNQL--YQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSAD---SLVRVLCGENVVG-KFKAS 560 (755)
Q Consensus 493 ----~I~iwD-~~~~~~--~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~D---g~I~iwd~~~~~~-~~~~~ 560 (755)
.|.+|| ..++.. ... + ......+.. ++|+| +++.|+..+.+ +.++||++..... ....
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~----l----~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~- 401 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQS----I----TSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC- 401 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCB----S----CCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEECSSTTCCCBC-
T ss_pred cceeEEEEEeccCCCCccceeE----e----ecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEEeCCCCCCcce-
Confidence 577777 344430 111 1 111233444 69999 78887766655 7899998754221 1111
Q ss_pred eec---cCCceEEEEEecCCCEEEEEeCCC---cEEEEEcCCC
Q 004410 561 AFR---VAGSQMFATFTSDGKHVVSPSEDS---NIYIWNYSNQ 597 (755)
Q Consensus 561 ~~~---~~~~v~~l~fspdg~~L~sgs~Dg---~I~iWd~~~~ 597 (755)
... +...+..++|+|||++|+.....- ...+++..++
T Consensus 402 l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 402 LSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred ecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 111 456688999999999988754332 2344554433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-17 Score=174.73 Aligned_cols=236 Identities=13% Similarity=0.142 Sum_probs=170.6
Q ss_pred EEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe
Q 004410 291 KFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (755)
Q Consensus 291 ~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (755)
.|.++++ .+++++.++.|++||+.+++....+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~----------------------------------------------- 36 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI----------------------------------------------- 36 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------------------------------------
Confidence 4555554 5778889999999999887653322
Q ss_pred CCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCeE-EEEEecCCcEEE-EEEeeCCCCEEE
Q 004410 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGIDRC-LRVFSHNNYVTS-VAFNPVDDNYFI 445 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~~~-~~~~~h~~~V~~-i~fsp~d~~~l~ 445 (755)
..+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.+...... ++|+| ++++++
T Consensus 37 ---------------~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 37 ---------------TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp ---------------ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred ---------------EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 2234445 89999999 5666655 89999999999887 666654444445 99999 999888
Q ss_pred EEeCCC---cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCc-EEEEECCCCeEeeeeeEEecccccCCC
Q 004410 446 SGSIDG---KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGN-CRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 446 sgs~Dg---~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~-I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
++..++ .|.+||+.+++.+........+..++|+|+|++|+++ ..++. |.+|++.....+..... ......
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~----~~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ----EFISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE----EEECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC----ccccCC
Confidence 555553 8999999999988766666778999999999876665 45588 99999986443322111 111234
Q ss_pred CCeEEEEEcCCCCCEEEE-EECCCcEEEEECCccee---eEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcC
Q 004410 521 KRITGFQFSPSDPSKVIV-TSADSLVRVLCGENVVG---KFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~ 595 (755)
.....++|+| +++++++ +..++.|.+||..+... ... ......+..++|+|||++|+.++ .++.|.+||+.
T Consensus 176 ~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 176 TRPFNITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNA---VGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp SSEEEEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEE---EECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeee---ccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 5689999999 7775554 45689999999876544 222 23446778899999999877665 57889999998
Q ss_pred CCC
Q 004410 596 NQD 598 (755)
Q Consensus 596 ~~~ 598 (755)
+++
T Consensus 252 ~~~ 254 (331)
T 3u4y_A 252 SGT 254 (331)
T ss_dssp TTE
T ss_pred CCc
Confidence 875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=179.70 Aligned_cols=282 Identities=13% Similarity=0.048 Sum_probs=184.3
Q ss_pred cceeecCCCCeeEEeeC-CCe--EEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 239 GSATLKPGDHELTLGQR-MRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~-dg~--V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
...+|+|||++|+.++. ++. |.+|+...... .+...+|...+..+.|+|||++|+.++.++.|++||+.+
T Consensus 39 ~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred cCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 34789999999998877 674 77777654332 122344555555678999999999999999999999988
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE-
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL- 394 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l- 394 (755)
++....+.. +...+...
T Consensus 112 g~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 129 (388)
T 3pe7_A 112 LEENVVYQV--------------------------------------------------------------PAEWVGYGT 129 (388)
T ss_dssp CCEEEEEEC--------------------------------------------------------------CTTEEEEEE
T ss_pred Ccceeeeec--------------------------------------------------------------hhhcccccc
Confidence 764332221 11112111
Q ss_pred -EEcCCC-eEEE----------------------EeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 395 -SWSKNG-FLLS----------------------SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 395 -~~s~~~-~L~s----------------------~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
.+++++ .++. ...+..|++||+.+++......+...+..++|+|.+++.|+....+
T Consensus 130 ~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 130 WVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECS
T ss_pred eeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEec
Confidence 124444 2221 2244779999999998877777888899999999556777666653
Q ss_pred ------CcEEEEEcCCCeEEEeccCC--cceEEEEEccCCCeEEEEeC-CC----cEEEEECCCCeEeeeeeEEeccccc
Q 004410 451 ------GKVRIWEVRRCQVVDYTDIR--EIVSAVCYCPDGKGGIVGTM-TG----NCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 451 ------g~V~iwdl~~~~~~~~~~~~--~~V~~v~~spdg~~la~gs~-dg----~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
..|.++|+..+....+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++...... +.+...
T Consensus 210 ~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~ 287 (388)
T 3pe7_A 210 PHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS--MPACSH 287 (388)
T ss_dssp CTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE--ECCEEE
T ss_pred CCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc--CCCcee
Confidence 37888898877766655554 35788999999998866543 22 39999999887543211 111000
Q ss_pred CCCCCeEEEEEcCCCCCEEEEE---------ECCCcEEEEECCcceeeEEEeeeccCC-----------ceEEEEEecCC
Q 004410 518 LPGKRITGFQFSPSDPSKVIVT---------SADSLVRVLCGENVVGKFKASAFRVAG-----------SQMFATFTSDG 577 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~---------s~Dg~I~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~fspdg 577 (755)
. ......+.|+| +++.|+.. ..+..|++||......... ..+.. .+..++|+|||
T Consensus 288 ~-~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg 362 (388)
T 3pe7_A 288 L-MSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDD 362 (388)
T ss_dssp E-EECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEEEE---EECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred e-eecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEe---ccccCcccccccccccCCCCccCCCCC
Confidence 0 00011236899 66666643 4567899999887543322 22333 47788999999
Q ss_pred CEEEEEe-CCCcEEEEEcCC
Q 004410 578 KHVVSPS-EDSNIYIWNYSN 596 (755)
Q Consensus 578 ~~L~sgs-~Dg~I~iWd~~~ 596 (755)
++|+.++ .+|...||.++-
T Consensus 363 ~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SEEEEEECTTSSCEEEEEEC
T ss_pred CEEEEEecCCCceeEEEEEC
Confidence 9888766 467766766543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=196.05 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=170.8
Q ss_pred ccccEEEEEEecCCCEEEEEcC-CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 283 HEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3568999999999999999887 99999999855432
Q ss_pred CCceEEEeCCcceeccCccceEecCCC-CCEEEEEEcCCCeEEEEeC---CCcEEEEeCCC---CeEEEEEecCCcEEEE
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHS-SEVLDLSWSKNGFLLSSSA---DKTVRLWQVGI---DRCLRVFSHNNYVTSV 434 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~s~~~~L~s~s~---Dg~V~iWdl~s---~~~~~~~~h~~~V~~i 434 (755)
..+..|. ..+..++|+|+..+++++. +...+||.+.. +... .+.....+...
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~ 115 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRIL 115 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceee
Confidence 1222343 5788899999854455554 45556654432 2222 44333445577
Q ss_pred EEeeCCCC-EEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC----CcEEEEECCCCeEeeeee
Q 004410 435 AFNPVDDN-YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 435 ~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d----g~I~iwD~~~~~~~~~~~ 509 (755)
+|+| +++ .+++...++.+.+||+.+++...+..+.. .+++|+|||+.|+.++.+ +.|++||+.+++...
T Consensus 116 ~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--- 189 (582)
T 3o4h_A 116 SGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--- 189 (582)
T ss_dssp EEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE---
T ss_pred eeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE---
Confidence 8888 654 44444555566699999998776655544 789999999999988777 779999999887542
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCC--cEEEEECCcceeeEEEeeeccCCceEEEE--------EecCCCE
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS--LVRVLCGENVVGKFKASAFRVAGSQMFAT--------FTSDGKH 579 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~--------fspdg~~ 579 (755)
+ ..+...+..++|+| |+++|+++..++ .|++||..+.... . ...+...+..++ |+|||.+
T Consensus 190 --l----~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~spdg~~ 259 (582)
T 3o4h_A 190 --F----DSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-D--LELPSKDFSSYRPTAITWLGYLPDGRL 259 (582)
T ss_dssp --E----CCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-E--CCCSCSHHHHHCCSEEEEEEECTTSCE
T ss_pred --e----ecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-E--ccCCCcChhhhhhccccceeEcCCCcE
Confidence 1 22456789999999 899999888888 8999998875554 2 245655666666 9999999
Q ss_pred EEEEeCCCcEEEEEc
Q 004410 580 VVSPSEDSNIYIWNY 594 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~ 594 (755)
+++++.|+.++||++
T Consensus 260 ~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 260 AVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEETTEEEEEET
T ss_pred EEEEEcCCcEEEEEE
Confidence 999999999999999
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=187.24 Aligned_cols=260 Identities=16% Similarity=0.116 Sum_probs=171.9
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
..+..|++++++.+|++++.|+ |+||+....... ....... .
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~----------------------------------~ 78 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDP----------------------------------N 78 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCT----------------------------------T
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCc----------------------------------c
Confidence 3578899999999999999888 999886432100 0000000 0
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE----EEeCCCcEEEEeCCCC--------eE---EEEE-ec
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL----SSSADKTVRLWQVGID--------RC---LRVF-SH 427 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~----s~s~Dg~V~iWdl~s~--------~~---~~~~-~h 427 (755)
.... ..+... ..|...|.+++|++++ +|+ +++.|++|+|||+.++ +. +..+ .|
T Consensus 79 ~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h 148 (434)
T 2oit_A 79 KIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA 148 (434)
T ss_dssp CEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG
T ss_pred cccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC
Confidence 0000 001111 2467789999999999 777 7888999999998654 22 2333 38
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||.|++||++ +....
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 8999999999944899999999999999999988655 455678899999999999999999999999999998 43332
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEE-EECCCc------EEEEECCcce----eeEEEee-e-----ccCCceE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIV-TSADSL------VRVLCGENVV----GKFKASA-F-----RVAGSQM 569 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s-~s~Dg~------I~iwd~~~~~----~~~~~~~-~-----~~~~~v~ 569 (755)
...... .....+...|.+++|++ +..++++ ...+|. +++|++.... ..+.... . ....+..
T Consensus 228 ~~~~~~-~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 305 (434)
T 2oit_A 228 VIPCPP-FYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHY 305 (434)
T ss_dssp EECCCT-TCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCE
T ss_pred cccCCc-ccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcce
Confidence 211100 00011234799999998 6555544 444543 8899987542 1111100 0 1222333
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEcC
Q 004410 570 FATFTSDGKHVVSPSE-DSNIYIWNYS 595 (755)
Q Consensus 570 ~l~fspdg~~L~sgs~-Dg~I~iWd~~ 595 (755)
.+.+-++.+++++++. .+.|.|....
T Consensus 306 ~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 306 YLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eeehhccCCEEEEecCCCCceeEEEec
Confidence 4444477777776654 3446666644
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=169.00 Aligned_cols=252 Identities=14% Similarity=0.135 Sum_probs=167.6
Q ss_pred ccCcceeecCCCCeeEEeeC---CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQR---MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~---dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~vW 311 (755)
.....++|+|+|+ |++++. ++.|.+|++..+.. .....+..|...+..++|+|||++|++++ .++.|.+|
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 4556699999999 555443 68999999854331 12233455777889999999999888887 67899999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
++........+... .... ..+. ...+...+
T Consensus 114 ~~~~~g~~~~~~~~---------------------------------~~~~---------------~~p~--~~~~~~~~ 143 (347)
T 3hfq_A 114 KIAADGALTLTDTV---------------------------------QHSG---------------HGPR--PEQDGSHI 143 (347)
T ss_dssp EECTTSCEEEEEEE---------------------------------ECCC---------------CCSS--TTCSSCCE
T ss_pred EeCCCCCeeeccee---------------------------------ecCC---------------CCCC--ccccCCCc
Confidence 98532211111000 0000 0000 11234568
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCC-CCeEEEEE--e--cCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEcCC--Ce
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVG-IDRCLRVF--S--HNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEVRR--CQ 462 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~-s~~~~~~~--~--h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl~~--~~ 462 (755)
.+++|+|++ .+++...++.|++|++. +++..... . ....+..++|+| +++++++ +..++.|.+|++.. ++
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGA 222 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 899999999 66666678899999998 55443222 2 344688999999 8886555 56788999999874 54
Q ss_pred EE---EeccCC------cceEEEEEccCCCeEEE-EeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 463 VV---DYTDIR------EIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 463 ~~---~~~~~~------~~V~~v~~spdg~~la~-gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
.. ...... ..+..++|+|||++|++ ...++.|.+||+... .+..... ...+...+..++|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~sp- 295 (347)
T 3hfq_A 223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDP- 295 (347)
T ss_dssp EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECT-
T ss_pred eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECC-
Confidence 32 122222 45889999999998855 556899999999732 2221111 122345678999999
Q ss_pred CCCEEEEEECC-CcEEEEECC
Q 004410 532 DPSKVIVTSAD-SLVRVLCGE 551 (755)
Q Consensus 532 d~~~l~s~s~D-g~I~iwd~~ 551 (755)
++++|++++.+ +.|.+|+..
T Consensus 296 dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 296 TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEcCCCcEEEEEEe
Confidence 88888877764 899999543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-17 Score=175.83 Aligned_cols=281 Identities=9% Similarity=0.034 Sum_probs=180.7
Q ss_pred eEEeeCC--CeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc-CCeeeeeeecC
Q 004410 250 LTLGQRM--RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI-EHERLDGFDVQ 325 (755)
Q Consensus 250 lasgs~d--g~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~-~~~~~~~~~~~ 325 (755)
++.|+.. +.|.+|++......+..+ ... .++...+..++|+|||++|++++.+ .|.+|++. +++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~---~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-- 78 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLI---KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-- 78 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEE---EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEe---eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--
Confidence 4455442 568887754322222211 111 1233467889999999999999888 99999986 554321110
Q ss_pred CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-e-EE
Q 004410 326 DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F-LL 403 (755)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~-L~ 403 (755)
...+ +.+..++|+|+| + ++
T Consensus 79 ----------------------------------------------------------~~~~-g~~~~~~~spdg~~l~~ 99 (365)
T 1jof_A 79 ----------------------------------------------------------HPIG-GHPRANDADTNTRAIFL 99 (365)
T ss_dssp ----------------------------------------------------------EECC-SSGGGGCTTSCCEEEEE
T ss_pred ----------------------------------------------------------eecC-CCCccEEECCCCCEEEE
Confidence 0001 113347788888 3 33
Q ss_pred -EEe-------------CCCcEEEEeCC-CCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcC-CC
Q 004410 404 -SSS-------------ADKTVRLWQVG-IDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVR-RC 461 (755)
Q Consensus 404 -s~s-------------~Dg~V~iWdl~-s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~-~~ 461 (755)
++. .++++.+|++. .++....+. +...+.+++|+| ++++++++.. ++.|++||+. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASG 178 (365)
T ss_dssp EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCC
Confidence 332 68999999997 466544432 467899999999 8988877664 6799999998 67
Q ss_pred eEEE---ec--cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECC--CCeEeeee-eEE-ecccccCCCC------CeEE
Q 004410 462 QVVD---YT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIK--DNQLYQQN-QIC-LQGKKKLPGK------RITG 525 (755)
Q Consensus 462 ~~~~---~~--~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~--~~~~~~~~-~~~-~~~~~~~~~~------~I~~ 525 (755)
+... .. .+...+..++|+|||++|+++.. ++.|.+|++. ++++.... .+. +......+.. .+..
T Consensus 179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 6532 21 13566899999999999988775 6889999765 45543211 111 1110011111 5889
Q ss_pred EE-EcCCCCCEEEEEECC-C-----cEEEEECC-cceeeEEE-eeeccCCceEEEEEec---CCCEEEEEeCC-CcEEEE
Q 004410 526 FQ-FSPSDPSKVIVTSAD-S-----LVRVLCGE-NVVGKFKA-SAFRVAGSQMFATFTS---DGKHVVSPSED-SNIYIW 592 (755)
Q Consensus 526 v~-fsp~d~~~l~s~s~D-g-----~I~iwd~~-~~~~~~~~-~~~~~~~~v~~l~fsp---dg~~L~sgs~D-g~I~iW 592 (755)
++ |+| ++++|+++..+ + .|.+|++. +....... ....+...+..++|+| ||++|++++.+ +.|.||
T Consensus 259 i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 259 VCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp EEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred EEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 99 999 88887776543 2 89999985 33222111 1122344566789999 89999999875 899999
Q ss_pred EcCCC
Q 004410 593 NYSNQ 597 (755)
Q Consensus 593 d~~~~ 597 (755)
+++..
T Consensus 338 ~~~~~ 342 (365)
T 1jof_A 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEchh
Confidence 98764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-16 Score=168.17 Aligned_cols=278 Identities=10% Similarity=0.130 Sum_probs=179.9
Q ss_pred eccCcceeecCCCCeeEEeeCC----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc-CCCcEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRM----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG-EDGTVR 309 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~d----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs-~Dg~I~ 309 (755)
......++|+|||++|++++.+ +.|.+|++......+. ....+..+......+++ ++++|++++ .++.|.
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~---~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH---LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT 123 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence 4556669999999999988875 7999998765322221 12233345556777888 888777776 578999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|++.....+..+.. . ... . .........+..
T Consensus 124 ~~~~~~~g~~~~~~~-------~-~~~----------------------~------------------g~~~~~~~~~~~ 155 (361)
T 3scy_A 124 VFPIGQDGALLPASD-------V-IEF----------------------K------------------GSGPDKERQTMP 155 (361)
T ss_dssp EEEBCTTSCBCSCSE-------E-EEC----------------------C------------------CCCSCTTTCSSC
T ss_pred EEEeCCCCcCcccce-------e-EEc----------------------c------------------CCCCCccccCCC
Confidence 999975433211100 0 000 0 000000112344
Q ss_pred CEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCe-------E-------EEEEecCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 004410 390 EVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDR-------C-------LRVFSHNNYVTSVAFNPVDDNYFISGS-IDGK 452 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~-------~-------~~~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~ 452 (755)
.+.+++|+|++ +|++++ .++.|++|++.... . .....+...+..++|+| +++++++++ .++.
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~ 234 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGT 234 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCe
Confidence 57899999999 565555 58899999887543 1 12233566789999999 898877766 6899
Q ss_pred EEEEEcCCCeEEE---e---ccCCcceEEEEEccCCCeEEEEeCC--CcEEEEECC--CCeEeeeeeEEecccccCCCCC
Q 004410 453 VRIWEVRRCQVVD---Y---TDIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIK--DNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 453 V~iwdl~~~~~~~---~---~~~~~~V~~v~~spdg~~la~gs~d--g~I~iwD~~--~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
|.+|++.++.+.. . ..+...+..++|+|||++|+++..+ +.|.+|++. ++++.....+ .. ...
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~------~~-g~~ 307 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ------LT-GIH 307 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE------EC-SSC
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe------cC-CCC
Confidence 9999998776532 1 1223456899999999999777665 889999996 4443322111 11 356
Q ss_pred eEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeEEEee-eccCCceEEEEEe
Q 004410 523 ITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKFKASA-FRVAGSQMFATFT 574 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~-~~~~~~v~~l~fs 574 (755)
+..++|+| ++++|++++ .++.|.+|+............ ..+...+.++.|.
T Consensus 308 ~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 77899999 888888877 678999976543222222211 1234567888875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=168.43 Aligned_cols=192 Identities=8% Similarity=0.008 Sum_probs=145.0
Q ss_pred EEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecCC------cEEEEEEeeCCCCEEEEEe------------CC
Q 004410 391 VLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHNN------YVTSVAFNPVDDNYFISGS------------ID 450 (755)
Q Consensus 391 V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~~------~V~~i~fsp~d~~~l~sgs------------~D 450 (755)
+..++|+|++ .+ +++..++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++. .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccC
Confidence 5678999999 54 555668899999999999888776433 678899999 898888886 57
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+.|.+||+.+++.+........+..++|+|+|++|+++ ++.|++||+.+++....... .. .... +.|+|
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~----~~--~~~~---~~~s~ 183 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI----QS--WEAE---TYAQP 183 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS----TT--TTTT---TBCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec----cc--cCCC---ceeCC
Confidence 99999999998887655556678899999999999888 68999999999887643221 00 0112 26788
Q ss_pred CCCCEEEEEECC-C-----------------------cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 531 SDPSKVIVTSAD-S-----------------------LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 531 ~d~~~l~s~s~D-g-----------------------~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
++..+++.+.. + .|.+||..+.... ......+...+..++|+|||++|+++ +
T Consensus 184 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 184 -DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp -BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred -CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 55544443332 2 4689998876544 33334566678899999999999988 7
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
+.|++||+.+++
T Consensus 260 ~~v~~~d~~~~~ 271 (337)
T 1pby_B 260 NVLESFDLEKNA 271 (337)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEECCCCc
Confidence 999999998775
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=193.68 Aligned_cols=275 Identities=11% Similarity=0.061 Sum_probs=187.1
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc---cEEEEEEecCCCEEEEEcC---------CCc
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG---SILTMKFSLDGQYLASGGE---------DGT 307 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~fspdg~~LaSgs~---------Dg~ 307 (755)
.++|+|+|++++++ .++.|++|+...+.. .+.+.+|.. .|.+++|||||++||+++. ++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE-------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-------EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 58999999765554 699999999876542 122334443 3899999999999999876 789
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|++||+.+++.+... .+
T Consensus 92 i~~~d~~~g~~~~~~------------------------------------------------------------~l--- 108 (719)
T 1z68_A 92 YYIYDLSNGEFVRGN------------------------------------------------------------EL--- 108 (719)
T ss_dssp EEEEETTTTEECCSS------------------------------------------------------------CC---
T ss_pred EEEEECCCCccccce------------------------------------------------------------ec---
Confidence 999999887641100 00
Q ss_pred CCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcE-----------------EEEEEeeCCCCEEEEE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYFISG 447 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V-----------------~~i~fsp~d~~~l~sg 447 (755)
...+..++|+||| .|+++. ++.|++||+.+++...... +...| .+++|+| |+++|+++
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~ 186 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYA 186 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEE
Confidence 1346779999999 777765 7899999999887765432 22222 4899999 99999998
Q ss_pred eCCC----------------------------------cEEEEEcCCCeEE---E------eccCCcceEEEEEccCCCe
Q 004410 448 SIDG----------------------------------KVRIWEVRRCQVV---D------YTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 448 s~Dg----------------------------------~V~iwdl~~~~~~---~------~~~~~~~V~~v~~spdg~~ 484 (755)
+.|. .|++||+.+++.. . +..+...+..++|+||++.
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 8653 7889999987642 2 2346778999999999877
Q ss_pred EEEEeCCC----cEEEEE----CCCCeEeeeeeEEecccccCCCCCeE-----EEEEcCCCCCEEEE--EECCCc--EEE
Q 004410 485 GIVGTMTG----NCRFYD----IKDNQLYQQNQICLQGKKKLPGKRIT-----GFQFSPSDPSKVIV--TSADSL--VRV 547 (755)
Q Consensus 485 la~gs~dg----~I~iwD----~~~~~~~~~~~~~~~~~~~~~~~~I~-----~v~fsp~d~~~l~s--~s~Dg~--I~i 547 (755)
+++....+ .|.+|| +.+++........ ...+...+. .+.|+| +++.++. ...++. |.+
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI----EESRTGWAGGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE----EECSSSCSSSSSCCCCEECT-TSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecc----cccCCceEccccCCccEECC-CCCeEEEEEEccCCceEEEE
Confidence 77644332 488899 7777654322100 012333444 789999 6664443 445564 555
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSN 596 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~ 596 (755)
|+....... . ...+...+..+.++ +++.|+..+.+ +.++||.+..
T Consensus 342 ~~~~~~~~~-~--lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 342 IKDTVENAI-Q--ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ESSCSTTCE-E--CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EECCCCceE-e--cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 665543311 1 13344567777777 88888777665 8899998864
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=191.55 Aligned_cols=287 Identities=11% Similarity=0.025 Sum_probs=187.7
Q ss_pred CcceeecCCCCeeEEeeC---------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcE
Q 004410 238 HGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~---------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I 308 (755)
+.+++|||||++||+++. ++.|++|++.++... .. +.+ ...+..++|||||++||++. |+.|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-~~----~~l---~~~~~~~~~SPDG~~la~~~-~~~i 132 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-RG----NEL---PRPIQYLCWSPVGSKLAYVY-QNNI 132 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS----SCC---CSSBCCEEECSSTTCEEEEE-TTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-cc----eec---CcccccceECCCCCEEEEEE-CCeE
Confidence 567999999999998876 789999998765420 00 011 24588899999999999986 7899
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
++|++.+++........ .....+.||.
T Consensus 133 ~~~~~~~g~~~~l~~~~-----------------------------------------------------~~~~v~~g~~ 159 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNG-----------------------------------------------------RENKIFNGIP 159 (719)
T ss_dssp EEESSTTSCCEECCCCC-----------------------------------------------------BTTTEEESSC
T ss_pred EEEeCCCCCcEEEecCC-----------------------------------------------------CcCCeEcccc
Confidence 99999877643211000 0000112332
Q ss_pred C---------CEEEEEEcCCC-eEEEEeCCC----------------------------------cEEEEeCCCCeEE--
Q 004410 389 S---------EVLDLSWSKNG-FLLSSSADK----------------------------------TVRLWQVGIDRCL-- 422 (755)
Q Consensus 389 ~---------~V~~l~~s~~~-~L~s~s~Dg----------------------------------~V~iWdl~s~~~~-- 422 (755)
. ...+++|+||| .|++++.|. .|++||+.+++..
T Consensus 160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~ 239 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP 239 (719)
T ss_dssp CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence 2 22578999999 888777552 7899999988752
Q ss_pred -EE-----E-ecCCcEEEEEEeeCCCCEEEEEeCCC----cEEEEE----cCCCeEEEec-----cCCcceE-----EEE
Q 004410 423 -RV-----F-SHNNYVTSVAFNPVDDNYFISGSIDG----KVRIWE----VRRCQVVDYT-----DIREIVS-----AVC 477 (755)
Q Consensus 423 -~~-----~-~h~~~V~~i~fsp~d~~~l~sgs~Dg----~V~iwd----l~~~~~~~~~-----~~~~~V~-----~v~ 477 (755)
.. + .|...+..++|+| |++++++....+ .|.+|| +.++++.... .+...+. .+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 240 QEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp EECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred eEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE
Confidence 22 1 3777899999999 777777644332 488999 8777765433 4555565 789
Q ss_pred EccCCCeEEE--EeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-----CCcEEEE
Q 004410 478 YCPDGKGGIV--GTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-----DSLVRVL 548 (755)
Q Consensus 478 ~spdg~~la~--gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-----Dg~I~iw 548 (755)
|+|||+.|+. ...+| .|.+||+.+++... + ..+...+..+.+. ++..|+..+. ++.+++|
T Consensus 319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-----l----t~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 319 FSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-----I----TSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp ECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-----C----SCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEE
T ss_pred ECCCCCeEEEEEEccCCceEEEEEECCCCceEe-----c----ccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEE
Confidence 9999997665 44555 47777877665321 1 1123456777766 4455555554 4888998
Q ss_pred ECCccee--eEEEe---eeccCCceEEEEEecCCCEEEEE-eCC--CcEEEEEcCCCC
Q 004410 549 CGENVVG--KFKAS---AFRVAGSQMFATFTSDGKHVVSP-SED--SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~--~~~~~---~~~~~~~v~~l~fspdg~~L~sg-s~D--g~I~iWd~~~~~ 598 (755)
....... ..... ...+...+..+.|+|||++|+.. +.+ ..+++||+.+++
T Consensus 388 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 388 RISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8653111 11110 01144567889999999887754 333 468999987775
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=163.49 Aligned_cols=281 Identities=11% Similarity=0.071 Sum_probs=186.0
Q ss_pred CCCCeeEEee------CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcE
Q 004410 245 PGDHELTLGQ------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTV 308 (755)
Q Consensus 245 pdg~~lasgs------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I 308 (755)
++++++++.. .|+.|.+||..+... ..++..+..+ .++|+|||++|+++. .++.|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKF-------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCE-------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeE-------EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 3555555442 377999999765432 2345555555 899999999999886 36789
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+.+++.+..+...... ..+.
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~--------------------------------------------------------~~~g 107 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKR--------------------------------------------------------VQGL 107 (361)
T ss_dssp EEEETTTCCEEEEEEECTTB--------------------------------------------------------CCBC
T ss_pred EEEECcCCcEEEEEEcCccc--------------------------------------------------------cccC
Confidence 99999887766554321100 0012
Q ss_pred CCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-CeE
Q 004410 389 SEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-CQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~~~ 463 (755)
.....++++|+| +|+++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||++.+|++.. +++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 334568999999 7777653 68999999999999888 655433 33567784457888999999999999865 554
Q ss_pred EEe------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC-C---CCCeEEEEEcCCCC
Q 004410 464 VDY------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL-P---GKRITGFQFSPSDP 533 (755)
Q Consensus 464 ~~~------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~-~---~~~I~~v~fsp~d~ 533 (755)
... .........+.+++++..++..+.++.|.++|+............+...... . ......++|+| ++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg 265 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-AS 265 (361)
T ss_dssp EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TT
T ss_pred eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CC
Confidence 411 1111112234456788888888899999999997654322111111110000 0 01111368999 66
Q ss_pred CEEEEEEC-----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 534 SKVIVTSA-----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 534 ~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
..++++.. .+.|.+||..+....... ..+. +..++|+|||++|++++. +.|.+||..++
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i--~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI--PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE--ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE--ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 66665532 347999999886554443 2233 899999999999999887 99999999988
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=166.53 Aligned_cols=298 Identities=11% Similarity=0.060 Sum_probs=186.3
Q ss_pred ccCcceeecCCCCeeEEeeCC---CeEEEEECCCCcccccccccceeeeccccc-EEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRM---RRVRVHPVKKQSRELSSLYTGQEFLAHEGS-ILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~d---g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
..+..++|+|||++|+..... ..|.+|+....... .+..+... +..+.|+|||++|+.++.++.|++|
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~--------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV--------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE--------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE--------EeecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 346678999999998876543 46888887654311 12222222 2337899999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
++.+++.......+.. +.+.. ..+++.... ....+ ..
T Consensus 108 d~~~~~~~~~~~~~~~------~~~~g--------------------------~~l~~~~~~------~~~~~-----~~ 144 (396)
T 3c5m_A 108 DLETLEEQVIYTVDEE------WKGYG--------------------------TWVANSDCT------KLVGI-----EI 144 (396)
T ss_dssp ETTTCCEEEEEECCTT------EEEEE--------------------------EEEECTTSS------EEEEE-----EE
T ss_pred ECCCCCcEEEEecccc------cCCCC--------------------------CEEEeccCC------ccccc-----cc
Confidence 9988764433321111 00000 000000000 00000 00
Q ss_pred EEEEEcCCC-eEEEE-----eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcC
Q 004410 392 LDLSWSKNG-FLLSS-----SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVR 459 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~-----s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~ 459 (755)
..+.|+|++ .++.. ..+..|++||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.
T Consensus 145 ~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 145 LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 124577887 44433 466789999999998877777888899999999446666655543 468999998
Q ss_pred CCeEEEeccC--CcceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 460 RCQVVDYTDI--REIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 460 ~~~~~~~~~~--~~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+++...+..+ ...+..++|+|||+.|+.++.+ +.|++||+.+++...... . .... +.|+|.+
T Consensus 225 ~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~--------~~~~-~~~s~~d 293 (396)
T 3c5m_A 225 GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV--M--------PPCS-HLMSNFD 293 (396)
T ss_dssp SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE--C--------CSEE-EEEECSS
T ss_pred CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee--C--------CCCC-CCccCCC
Confidence 7765554443 2358889999999988877654 449999999876543111 1 1123 7898845
Q ss_pred CCEEEEEE----------------CCCcEEEEECCcceeeEEEeeeccCC-----------ceEEEEEecCCCEEEEEeC
Q 004410 533 PSKVIVTS----------------ADSLVRVLCGENVVGKFKASAFRVAG-----------SQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 533 ~~~l~s~s----------------~Dg~I~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~fspdg~~L~sgs~ 585 (755)
++++++++ .+..|++||......... ..+.. .+..++|+|||++|+.++.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL---CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc---cCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 56777654 347899999876543222 22222 2566789999999887775
Q ss_pred -CCcEEE--EEcCCCC
Q 004410 586 -DSNIYI--WNYSNQD 598 (755)
Q Consensus 586 -Dg~I~i--Wd~~~~~ 598 (755)
++...| +++.++.
T Consensus 371 ~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 371 FEGVPAIYIADVPESY 386 (396)
T ss_dssp TTSSCEEEEEECCTTC
T ss_pred CCCCceEEEEEEcccc
Confidence 455444 4554443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=181.72 Aligned_cols=277 Identities=10% Similarity=0.045 Sum_probs=181.4
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccc-----cEEEEEEecCCCEEEEEcCC-------
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEG-----SILTMKFSLDGQYLASGGED------- 305 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~-----~V~~l~fspdg~~LaSgs~D------- 305 (755)
...++|+|||++++++ ++.|++|+..++... +.+.+|.. ....+.|||||++|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceE-------EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc
Confidence 4468999999999886 899999998765431 22344432 33458899999999999876
Q ss_pred --CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 306 --GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 306 --g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
+.+.+||+.+++.. .
T Consensus 90 ~~~~~~~~d~~~~~~~---------------------------------------------------------------~ 106 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLI---------------------------------------------------------------T 106 (740)
T ss_dssp EEEEEEEEETTTTEEC---------------------------------------------------------------C
T ss_pred cceEEEEEECCCCcEE---------------------------------------------------------------E
Confidence 55679999877532 1
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcE-----------------EEEEEeeCCCCE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNY 443 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V-----------------~~i~fsp~d~~~ 443 (755)
+..|...+...+||||| .|+.+ .++.|++||+.+++..+... +...+ ..+.|+| |++.
T Consensus 107 l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~ 184 (740)
T 4a5s_A 107 EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTF 184 (740)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSE
T ss_pred cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCE
Confidence 33466789999999999 77776 57899999999887654332 22223 3489999 9999
Q ss_pred EEEEeCCC------------------------------------cEEEEEcCC---C---eEEEecc------CCcceEE
Q 004410 444 FISGSIDG------------------------------------KVRIWEVRR---C---QVVDYTD------IREIVSA 475 (755)
Q Consensus 444 l~sgs~Dg------------------------------------~V~iwdl~~---~---~~~~~~~------~~~~V~~ 475 (755)
|+.++.|. +|++||+.+ + +...+.. +...+..
T Consensus 185 la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (740)
T ss_dssp EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence 98876332 488899988 7 5555443 6677999
Q ss_pred EEEccCCCeEEEEeCC----CcEEEEECCCCe----EeeeeeEEecccccCCCCC-----eEEEEEcCCCCCEEE-EEEC
Q 004410 476 VCYCPDGKGGIVGTMT----GNCRFYDIKDNQ----LYQQNQICLQGKKKLPGKR-----ITGFQFSPSDPSKVI-VTSA 541 (755)
Q Consensus 476 v~~spdg~~la~gs~d----g~I~iwD~~~~~----~~~~~~~~~~~~~~~~~~~-----I~~v~fsp~d~~~l~-s~s~ 541 (755)
++|+|||+.++..... ..|.+||+.+++ ......+.. ..+... .....|+| |++.|+ ..+.
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~ 339 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISN 339 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEEC
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEc
Confidence 9999999977665433 369999999876 222111100 112222 23678999 777666 5553
Q ss_pred -CC--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----C--cEEEEEcCCC
Q 004410 542 -DS--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----S--NIYIWNYSNQ 597 (755)
Q Consensus 542 -Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g--~I~iWd~~~~ 597 (755)
+| .|.+|+......... ......+..+. .+|++.|+..+.. + .|+..++..+
T Consensus 340 ~~G~~~l~~~~~~~~~~~~l---T~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 340 EEGYRHICYFQIDKKDCTFI---TKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp TTSCEEEEEEETTCSSCEES---CCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred CCCceEEEEEECCCCceEec---ccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 44 577777765433221 22334455443 2456666554433 3 4555555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-14 Score=146.44 Aligned_cols=248 Identities=9% Similarity=0.106 Sum_probs=175.6
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
+|-..+.+|+++++|+++++...++.|.+|+.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 455678999999999999998899999999975 43322221000
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEE-cCCCeEEEEeC--CCcEEEEeCCCCeEEEEEe--cCCcEEEEEE
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW-SKNGFLLSSSA--DKTVRLWQVGIDRCLRVFS--HNNYVTSVAF 436 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-s~~~~L~s~s~--Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~f 436 (755)
...+|...+..+++ .+++.|+.+.. ++.|++|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 00234556888999 46775555553 89999999 5677777764 4467899999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+| +++++++...++.|.+||........+. .....+..++++|+|+.+++...++.|++||..... +.. +..
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~----~~~ 202 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQ----IGG 202 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEE----ESC
T ss_pred eC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEE----Ecc
Confidence 99 8888888888899999997654433332 334568999999999977777789999999986543 221 111
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCC-cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADS-LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
..+...+.+++++| ++.++++...++ .|.+|+..... ............+..++++|+|+++++ +.|+.|++|+
T Consensus 203 --~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 203 --EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQL-ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp --TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCE-EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred --CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCE-EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 11235688999999 778888877776 99999965322 112211222334789999999987777 6799999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
+....
T Consensus 278 ~~~~~ 282 (286)
T 1q7f_A 278 YVQLA 282 (286)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 87644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=187.51 Aligned_cols=249 Identities=12% Similarity=0.124 Sum_probs=169.4
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
....++|+|||++|+++ |+.|++||+.+++....+..+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~--------------------------------------- 56 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST--------------------------------------- 56 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT---------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechh---------------------------------------
Confidence 35578999999999987 8999999998887533222111
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC---------CcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD---------KTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D---------g~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
+..+.....+++||||| +|+.++.+ +.+.+||+.++++.....+...+..++
T Consensus 57 ------------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 57 ------------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp ------------------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred ------------------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 01122233468899999 78887766 566799999999876556788999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc--CCcce-----------------EEEEEccCCCeEEEEeCCC----
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD--IREIV-----------------SAVCYCPDGKGGIVGTMTG---- 492 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~--~~~~V-----------------~~v~~spdg~~la~gs~dg---- 492 (755)
|+| |++.|+.+. |+.|++||+.+++...+.. ....+ .++.|+|||+.||.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887665432 22222 3589999999999875332
Q ss_pred --------------------------------cEEEEECCC---CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 493 --------------------------------NCRFYDIKD---NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 493 --------------------------------~I~iwD~~~---~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.|++||+.+ +.......+........+...+..++|+| |++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 477788777 52111111111000112556789999999 777666
Q ss_pred EEEC----CCcEEEEECCcce--------eeEEEeeeccCCceE-----EEEEecCCCEEE-EEeCC---CcEEEEEcCC
Q 004410 538 VTSA----DSLVRVLCGENVV--------GKFKASAFRVAGSQM-----FATFTSDGKHVV-SPSED---SNIYIWNYSN 596 (755)
Q Consensus 538 s~s~----Dg~I~iwd~~~~~--------~~~~~~~~~~~~~v~-----~l~fspdg~~L~-sgs~D---g~I~iWd~~~ 596 (755)
.... +..|.+||..+.. ..... ..+...+. .++|+|||+.|+ ..+.+ ..|++||+.+
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~--~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE--MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE--ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeee--ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 5533 3369999977654 11111 23444433 688999999887 66643 4589999887
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 354 ~~ 355 (740)
T 4a5s_A 354 KD 355 (740)
T ss_dssp SS
T ss_pred Cc
Confidence 65
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-15 Score=160.30 Aligned_cols=248 Identities=13% Similarity=0.102 Sum_probs=167.8
Q ss_pred eecccccEEE-----EEEecCCCEEEEEcC-CCc--EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcc
Q 004410 280 FLAHEGSILT-----MKFSLDGQYLASGGE-DGT--VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEK 351 (755)
Q Consensus 280 l~~H~~~V~~-----l~fspdg~~LaSgs~-Dg~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 351 (755)
+..|...+.. .+|+|||++||.++. ++. |.+||+.+++....
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------------------ 75 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------------------ 75 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------------------
Confidence 4455555555 789999999999887 664 77888877653221
Q ss_pred eeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCC
Q 004410 352 IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429 (755)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~ 429 (755)
..+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 76 --------------------------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 76 --------------------------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp --------------------------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred --------------------------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 12233334456799999 89999999999999999998877765 444
Q ss_pred cEEEEE--EeeCCCCEEEEE----------------------eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCe
Q 004410 430 YVTSVA--FNPVDDNYFISG----------------------SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKG 484 (755)
Q Consensus 430 ~V~~i~--fsp~d~~~l~sg----------------------s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~ 484 (755)
.+.... ++| ++.+++.. ..+..|++||+.+++...+..+...+..++|+| ||+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 454444 477 88887743 234679999999998887777778899999999 9999
Q ss_pred EEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCC----cEEEEECCcc
Q 004410 485 GIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADS----LVRVLCGENV 553 (755)
Q Consensus 485 la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg----~I~iwd~~~~ 553 (755)
|+..... ..|.++|+.++..... .. ......+..+.|+| +++.|+..+ .++ .|++||..+.
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV-----KT--HAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES-----CC--CCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe-----ee--CCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 9887763 3788888876654321 11 00112577889999 776554433 322 3999998876
Q ss_pred eeeEEEeeeccCCc---eEEEEEecCCCEEEEE---------eCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGS---QMFATFTSDGKHVVSP---------SEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~---v~~l~fspdg~~L~sg---------s~Dg~I~iWd~~~~~ 598 (755)
..........+... ...++|+|||++|+.. ..+..|++||+.+++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 54332221111000 1123799999988854 456789999998865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=175.83 Aligned_cols=295 Identities=11% Similarity=-0.017 Sum_probs=188.5
Q ss_pred eeeeeccCcceeecCCCCeeEEe--eCCCeEEEEECCCCcccccccccceeeecccccEE---------EEEEe--cCCC
Q 004410 231 MARIIDRHGSATLKPGDHELTLG--QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSIL---------TMKFS--LDGQ 297 (755)
Q Consensus 231 ~~~~~~~~~~~~~spdg~~lasg--s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~---------~l~fs--pdg~ 297 (755)
+.+|...+..+++++++-+++.. ..+++..||....... .+.+..|...|. ...|+ |||+
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-------EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-------EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-------cceeCCCCccccccccccCCccceeeeecCCC
Confidence 44455667778999887666766 5588999998532211 223445555555 56666 9999
Q ss_pred E-EEEEcC-CCcEEEEEcc--C-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCc
Q 004410 298 Y-LASGGE-DGTVRVWKVI--E-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (755)
Q Consensus 298 ~-LaSgs~-Dg~I~vWdv~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (755)
+ |+.++. +..|.+|++. . ++ ...+...
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~----------------------------------------------- 123 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV----------------------------------------------- 123 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC-----------------------------------------------
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC-----------------------------------------------
Confidence 8 776654 4556666554 1 22 1110000
Q ss_pred ceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCC----------CcEEEEeCCC------CeEEEEE-ecCCcEEEE
Q 004410 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSAD----------KTVRLWQVGI------DRCLRVF-SHNNYVTSV 434 (755)
Q Consensus 373 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~D----------g~V~iWdl~s------~~~~~~~-~h~~~V~~i 434 (755)
....|...+..++|+||| .|++++.+ ..|++||+.+ ++..... .+...+..+
T Consensus 124 ----------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (662)
T 3azo_A 124 ----------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP 193 (662)
T ss_dssp ----------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred ----------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence 000155678899999999 88888776 5899999988 6665555 566788899
Q ss_pred EEeeCCCCEEEEEeCCC--------cEEEEEcC-CC---eEEEecc-CCcceEEEEEccCCCeEEEEeCCC--cEEEEEC
Q 004410 435 AFNPVDDNYFISGSIDG--------KVRIWEVR-RC---QVVDYTD-IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDI 499 (755)
Q Consensus 435 ~fsp~d~~~l~sgs~Dg--------~V~iwdl~-~~---~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~ 499 (755)
+|+| |+++|+.++.++ .|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|.+||+
T Consensus 194 ~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 194 RLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp EECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred eECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 9999 999998877553 79999999 56 5554444 467899999999999777887788 6777777
Q ss_pred CCCeEeeeeeEEeccccc--CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE--CCcceeeEEEeeeccCCceEEE-EEe
Q 004410 500 KDNQLYQQNQICLQGKKK--LPGKRITGFQFSPSDPSKVIVTSADSLVRVLC--GENVVGKFKASAFRVAGSQMFA-TFT 574 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~--~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd--~~~~~~~~~~~~~~~~~~v~~l-~fs 574 (755)
.+++....... ..... .-...+..++|+| ++.+++++.. +.++||. ..... ... ...+...+..+ +++
T Consensus 273 ~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~--~~~-l~~~~~~~~~~~s~~ 345 (662)
T 3azo_A 273 ATGAATQLCRR--EEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE--LVD-AAGPWTEWAATLTVS 345 (662)
T ss_dssp TTCCEEESSCC--SSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE--EEE-CCSSCCEEEEEEEEE
T ss_pred CCCceeecccc--cccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc--EEE-ecCCCCeEEEEEecC
Confidence 66654432110 00000 0001145688998 7889999988 9999994 43322 221 23455566665 444
Q ss_pred cCCCEEEEEeCCC--cEEEEEcCCCC
Q 004410 575 SDGKHVVSPSEDS--NIYIWNYSNQD 598 (755)
Q Consensus 575 pdg~~L~sgs~Dg--~I~iWd~~~~~ 598 (755)
.+.-++++++.+. .|++||+.+++
T Consensus 346 ~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp TTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3333344555554 46666766665
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=156.30 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=163.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECC-CCcccccccccceeeecccccEEEEEEecCCCE--EEEEc----------
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVK-KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQY--LASGG---------- 303 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~-~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~--LaSgs---------- 303 (755)
.+..++|+|+|++|++++.+ .|.+|++. .+.. ... .....+ +.+.+++|+|||++ |+++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~--~~~---~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI--VHE---ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE--EEE---EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE--EEe---eEeecC-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 35569999999999988887 99999975 3221 100 011111 23456899999994 55654
Q ss_pred ---CCCcEEEEEccC-CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 304 ---EDGTVRVWKVIE-HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 304 ---~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
.+|.+.+|++.. ++....+.
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~-------------------------------------------------------- 137 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQ-------------------------------------------------------- 137 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEE--------------------------------------------------------
T ss_pred eecCCceEEEEccCCCCcCcceEe--------------------------------------------------------
Confidence 688999999863 43211110
Q ss_pred cceEe-cCCCCCEEEEEEcCCC-eEEEEe-CCCcEEEEeCC-CCeEEE--EEe---cCCcEEEEEEeeCCCCEEEEEeC-
Q 004410 380 PLHEF-QGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVG-IDRCLR--VFS---HNNYVTSVAFNPVDDNYFISGSI- 449 (755)
Q Consensus 380 ~~~~~-~gh~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~-s~~~~~--~~~---h~~~V~~i~fsp~d~~~l~sgs~- 449 (755)
.+ ..+...+.+++|+|+| +|+++. .++.|++||+. +++... .+. +...+..++|+| +++++++++.
T Consensus 138 ---~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~ 213 (365)
T 1jof_A 138 ---NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEA 213 (365)
T ss_dssp ---EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETT
T ss_pred ---eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECC
Confidence 00 1245678999999999 676665 46899999998 676532 232 366799999999 9988887765
Q ss_pred CCcEEEEEcC--CCeEE----Eecc-------CCc------ceEEEE-EccCCCeEEEEeCCC------cEEEEECC-CC
Q 004410 450 DGKVRIWEVR--RCQVV----DYTD-------IRE------IVSAVC-YCPDGKGGIVGTMTG------NCRFYDIK-DN 502 (755)
Q Consensus 450 Dg~V~iwdl~--~~~~~----~~~~-------~~~------~V~~v~-~spdg~~la~gs~dg------~I~iwD~~-~~ 502 (755)
++.|.+|++. +++.. .... +.. .+..++ |+|||++|+++..+. .|.+|++. ++
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 7899999875 45432 1111 111 588999 999999988776433 89999996 56
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCC--CCCEEEEEECC-CcEEEEECCcc
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPS--DPSKVIVTSAD-SLVRVLCGENV 553 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~~l~s~s~D-g~I~iwd~~~~ 553 (755)
++...... . ..+...+..++|+|. ++++|++++.+ +.|.||+....
T Consensus 294 ~~~~~~~~-~----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 294 SIEKQLFL-S----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CEEEEEEE-E----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEeeee-e----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 54321110 1 112234556889995 57888888764 89999987654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-14 Score=149.20 Aligned_cols=276 Identities=10% Similarity=0.019 Sum_probs=186.6
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++|+|++..++....++.+++|... ....+..+...+.+++|+|+|++++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccccc----------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 346678899998888777778888888321 1123455667789999999999888889999999999876
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++.... ...+...+.+++
T Consensus 76 ~~~~~~--------------------------------------------------------------~~~~~~~~~~i~ 93 (333)
T 2dg1_A 76 KEIKRP--------------------------------------------------------------FVSHKANPAAIK 93 (333)
T ss_dssp CCEEEE--------------------------------------------------------------EECSSSSEEEEE
T ss_pred CcEEEE--------------------------------------------------------------eeCCCCCcceEE
Confidence 642110 112446789999
Q ss_pred EcCCC-eEEEEeCC----CcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeC------CCcEEEEEcCCC
Q 004410 396 WSKNG-FLLSSSAD----KTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSI------DGKVRIWEVRRC 461 (755)
Q Consensus 396 ~s~~~-~L~s~s~D----g~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwdl~~~ 461 (755)
+++++ .+++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..+|..++
T Consensus 94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCC
Confidence 99999 45554445 589999998887654442 456799999999 8888877654 356777777666
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCC-CeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKD-NQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~-~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+...+......+..++|+|+|+.|+++ +.++.|.+||+.+ +............... ....+..+++.+ ++.++++.
T Consensus 173 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~-~G~l~v~~ 250 (333)
T 2dg1_A 173 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDS-DDNLYVAM 250 (333)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBT-TCCEEEEE
T ss_pred EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECC-CCCEEEEE
Confidence 655444444567899999999876554 4578999999964 3322111100000001 114678899999 78877777
Q ss_pred ECCCcEEEEECCcceeeEEEeeec----cCCceEEEEEecCCCEEEEEeCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFR----VAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~----~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
..++.|.+||.... ......... +...+.+++|++|++.|+.++.++
T Consensus 251 ~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 251 YGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp ETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred cCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 78899999997432 211211110 111578999999988777665553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-15 Score=156.06 Aligned_cols=232 Identities=8% Similarity=-0.012 Sum_probs=157.6
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEE
Q 004410 289 TMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVV 368 (755)
Q Consensus 289 ~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (755)
.+++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 356788999999999999999999988865443321
Q ss_pred eCCcceeccCccceEecCCCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEecC-------CcEEEEEEeeC
Q 004410 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFSHN-------NYVTSVAFNPV 439 (755)
Q Consensus 369 ~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~h~-------~~V~~i~fsp~ 439 (755)
++...+..++|+|++ .+ ++...++.|.+||+.+++.+..+... ..+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111135678999998 44 45557899999999999988777532 2378999999
Q ss_pred CCCEEEEEeCC------------CcEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeE
Q 004410 440 DDNYFISGSID------------GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504 (755)
Q Consensus 440 d~~~l~sgs~D------------g~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~ 504 (755)
++++|++++.+ +.|.+||+.+++. +....+...+.+++|+|+|+ +++++ +.|++||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999988865 8999999988432 23333445688999999999 66654 4499999998887
Q ss_pred eeeeeEEecccc-------------cCCCC---CeEEEEEcCCCC----------CEEEEEECCCcEEEEECCcceeeEE
Q 004410 505 YQQNQICLQGKK-------------KLPGK---RITGFQFSPSDP----------SKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 505 ~~~~~~~~~~~~-------------~~~~~---~I~~v~fsp~d~----------~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
............ ..... ....+++++++. .++.....++.+++|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 250 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-------- 250 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE--------
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc--------
Confidence 653221100000 00000 234466665211 11122333445555443
Q ss_pred EeeeccCCceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTS-DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fsp-dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
..+...+..++|+| +|++|+++ ++.|++||+.+++
T Consensus 251 ---~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 251 ---ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp ---EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred ---ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 22455788999999 99999988 8899999998875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-14 Score=148.52 Aligned_cols=253 Identities=10% Similarity=0.034 Sum_probs=168.8
Q ss_pred ceeecCCCCeeEEee---------CCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC---C-
Q 004410 240 SATLKPGDHELTLGQ---------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED---G- 306 (755)
Q Consensus 240 ~~~~spdg~~lasgs---------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D---g- 306 (755)
..++ ||+.++... .++.|.+|+...+.. +.+ ..+..++|||||++||.++.+ +
T Consensus 19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 3556 888777642 256788998765431 112 468889999999999988754 2
Q ss_pred -cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 307 -TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 307 -~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
.|.+|++.+++.... .
T Consensus 85 ~~l~~~~~~~g~~~~l---------------------------------------------------------------~ 101 (347)
T 2gop_A 85 SEIWVADLETLSSKKI---------------------------------------------------------------L 101 (347)
T ss_dssp EEEEEEETTTTEEEEE---------------------------------------------------------------E
T ss_pred ceEEEEECCCCceEEE---------------------------------------------------------------E
Confidence 377777766543211 1
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeC---------------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEe
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSA---------------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~---------------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fs 437 (755)
.+.. +..++|+|++ .|+.++. ...|++||+.+++.+..+... .+..++|+
T Consensus 102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~s 179 (347)
T 2gop_A 102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWH 179 (347)
T ss_dssp EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEE
T ss_pred cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCC
Confidence 1112 7788888888 6666653 257999999998874444333 88899999
Q ss_pred eCCCCEEEEEeCCC-------cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC--------CcEEEEECCCC
Q 004410 438 PVDDNYFISGSIDG-------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT--------GNCRFYDIKDN 502 (755)
Q Consensus 438 p~d~~~l~sgs~Dg-------~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d--------g~I~iwD~~~~ 502 (755)
| ++ +++++..++ ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ ..|.+|| ++
T Consensus 180 p-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 180 R-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp T-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred C-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 9 88 777776542 334444446665555444 455544 9999999887754 3688888 44
Q ss_pred eEeeeeeEEecccccCCCCCeEE-EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITG-FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~-v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~ 581 (755)
+... + ...+...+.. +.|+ ++ ++++++.++.++|| ..+... ... ..+...|.+++|+| .+++
T Consensus 253 ~~~~-----l---~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~-~~~--~~~~~~v~~~~~s~--~~~~ 315 (347)
T 2gop_A 253 EVMG-----I---LDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEI-KPI--AKGRHWIMGFDVDE--IVVY 315 (347)
T ss_dssp CEEE-----S---STTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSE-EEE--ECSSSEEEEEEESS--SEEE
T ss_pred ceEe-----c---cccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCce-EEE--ecCCCeEEeeeeeC--cEEE
Confidence 4321 1 1223456775 8898 45 88899999999999 763222 222 34567899999999 7888
Q ss_pred EEeCCCcE-EEEEcC
Q 004410 582 SPSEDSNI-YIWNYS 595 (755)
Q Consensus 582 sgs~Dg~I-~iWd~~ 595 (755)
+++.++.. .||.++
T Consensus 316 ~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 316 LKETATRLRELFTWD 330 (347)
T ss_dssp EEECSSSCCEEEEES
T ss_pred EEcCCCChHHheEeC
Confidence 88877765 778776
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-13 Score=140.74 Aligned_cols=243 Identities=11% Similarity=0.098 Sum_probs=169.2
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEe-cCCCEEEEEcC-CCcEEEEE
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFS-LDGQYLASGGE-DGTVRVWK 312 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fs-pdg~~LaSgs~-Dg~I~vWd 312 (755)
......++++|++.++++...++.|.+|+..... +..+.....-.+|...+..++++ ++++++++... ++.|.+|+
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 3445568999999988888889999999976321 11111100112455678999994 77777777643 88999998
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
.+++.+..+. ..+...+.
T Consensus 107 -~~g~~~~~~~-------------------------------------------------------------~~~~~~~~ 124 (286)
T 1q7f_A 107 -QYGQFVRKFG-------------------------------------------------------------ATILQHPR 124 (286)
T ss_dssp -TTSCEEEEEC-------------------------------------------------------------TTTCSCEE
T ss_pred -CCCcEEEEec-------------------------------------------------------------CccCCCce
Confidence 4444322110 12334678
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~ 468 (755)
++++.+++ .+++...++.|.+||.. ++.+..+. +...+..|+++| +++++++...++.|++||.....+..+..
T Consensus 125 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~ 202 (286)
T 1q7f_A 125 GVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGG 202 (286)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred EEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence 89999999 55666678899999964 55666663 445789999999 88888888889999999986554444433
Q ss_pred C--CcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 469 I--REIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 469 ~--~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
. ...+..++++++|+++++...++ .|.+||.. ++.+..+.. ......+.+++++| ++.++++ +.++.|
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~------~~~~~~~~~i~~~~-~g~l~vs-~~~~~v 273 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES------KVKHAQCFDVALMD-DGSVVLA-SKDYRL 273 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE------SSCCSCEEEEEEET-TTEEEEE-ETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcc------cCCCCcceeEEECC-CCcEEEE-CCCCeE
Confidence 2 35789999999998888877776 99999965 444332221 11233578999999 7766555 679999
Q ss_pred EEEECCc
Q 004410 546 RVLCGEN 552 (755)
Q Consensus 546 ~iwd~~~ 552 (755)
++|+...
T Consensus 274 ~v~~~~~ 280 (286)
T 1q7f_A 274 YIYRYVQ 280 (286)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-13 Score=141.28 Aligned_cols=203 Identities=11% Similarity=0.110 Sum_probs=145.0
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe-EEEEEe----------cCCcEEEEEEeeCCCCEEEEEe-CCCc
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR-CLRVFS----------HNNYVTSVAFNPVDDNYFISGS-IDGK 452 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~-~~~~~~----------h~~~V~~i~fsp~d~~~l~sgs-~Dg~ 452 (755)
++......+++++++ .+++...++.|++||..... .+..+. +-.....|+++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 345678899999999 66777778999999986552 455552 2346899999985677888876 6999
Q ss_pred EEEEEcCCCeEEE-ecc----------CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 453 VRIWEVRRCQVVD-YTD----------IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 453 V~iwdl~~~~~~~-~~~----------~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
|++||. ++..+. +.. .-.....|+++|+ +.++++...++.|++||..+++.+.... .....
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------~~~~~ 240 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------HASFG 240 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC------CTTTT
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe------ccccC
Confidence 999994 454443 321 1234899999998 6667777788899999999777665322 12345
Q ss_pred CCeEEEEEcCCCCCEEEEEE-------CCCcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTS-------ADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
..+..++|+| +..+.+.+ .+..|++|+..+........ ...+...+..++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 6788999998 23333322 34589999977654333321 12455678999999999888888899999999
Q ss_pred EcCCC
Q 004410 593 NYSNQ 597 (755)
Q Consensus 593 d~~~~ 597 (755)
++...
T Consensus 319 ~~~~~ 323 (329)
T 3fvz_A 319 TLTEK 323 (329)
T ss_dssp EEEEC
T ss_pred eCCcc
Confidence 98653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-13 Score=141.56 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=175.3
Q ss_pred ccCcceeecCCCCeeEEeeCC------------------------CeEEEEECCCCcccccccccceee-ecccccEEEE
Q 004410 236 DRHGSATLKPGDHELTLGQRM------------------------RRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTM 290 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~d------------------------g~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l 290 (755)
..+..++++|+|+++++...+ ++|.+||...+... +.+ .++-.....|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~p~gi 96 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------QSSGKNLFYLPHGL 96 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------EEECTTTCSSEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------eccCCCccCCceEE
Confidence 456679999999999888777 47899987644321 111 2345578999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEccCCe-eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe
Q 004410 291 KFSLDGQYLASGGEDGTVRVWKVIEHE-RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (755)
Q Consensus 291 ~fspdg~~LaSgs~Dg~I~vWdv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (755)
+++|+|+++++...++.|++|+..... .+..+.....
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~------------------------------------------ 134 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ------------------------------------------ 134 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB------------------------------------------
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC------------------------------------------
Confidence 999999999999999999999974331 1111110000
Q ss_pred CCcceeccCccceEecCCCCCEEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCeEEEEEec-C----------CcEEEEE
Q 004410 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSK-NG-FLLSSS-ADKTVRLWQVGIDRCLRVFSH-N----------NYVTSVA 435 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~-~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~h-~----------~~V~~i~ 435 (755)
...-.++......++++| ++ .+++.+ .++.|++|| ..++.+..+.. . .....|+
T Consensus 135 -----------~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia 202 (329)
T 3fvz_A 135 -----------PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202 (329)
T ss_dssp -----------CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred -----------CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence 000023555788999999 67 555554 589999999 56777777741 1 3489999
Q ss_pred EeeCC-CCEEEEEeCCCcEEEEEcCCCeEEEec---cCCcceEEEEEcc------CCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 436 FNPVD-DNYFISGSIDGKVRIWEVRRCQVVDYT---DIREIVSAVCYCP------DGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 436 fsp~d-~~~l~sgs~Dg~V~iwdl~~~~~~~~~---~~~~~V~~v~~sp------dg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
++| + ++++++...++.|++||..+++.+... .+...+.+++|+| +|+..++...+..|++||+.+++++
T Consensus 203 ~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 203 LVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp EET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred EEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence 999 6 788888888999999999977776433 3456788999999 3333333344558999999998876
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
..+. ....+.....+++++| ++.++++...++.|++|+..
T Consensus 282 ~~~~-----~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 282 DVFK-----PVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEC-----CSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred EEEc-----CCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence 5421 1123456789999999 77888888889999999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-14 Score=166.23 Aligned_cols=284 Identities=11% Similarity=-0.012 Sum_probs=182.6
Q ss_pred eecCCCCeeEEeeCCC---eEEEEEC--CCCc-ccccccccceeeecccccEEEEEEecCCCEEE-----EEcCCCcEEE
Q 004410 242 TLKPGDHELTLGQRMR---RVRVHPV--KKQS-RELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-----SGGEDGTVRV 310 (755)
Q Consensus 242 ~~spdg~~lasgs~dg---~V~Vw~~--~~~~-~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-----Sgs~Dg~I~v 310 (755)
..+|+|++++....++ .-.||.. .... ..+.. ....-.+|...+..++|||||++|| .|+.+..|++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d--~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLD--PNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEEC--GGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEc--hHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 3458899888765543 3444543 2221 11110 0011135667899999999999999 4445678999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.+... .+... .
T Consensus 152 ~dl~tg~~~~~~------------------------------------------------------------~~~~~--~ 169 (695)
T 2bkl_A 152 IDVDSGEWSKVD------------------------------------------------------------VIEGG--K 169 (695)
T ss_dssp EETTTCCBCSSC------------------------------------------------------------CBSCC--T
T ss_pred EECCCCCCcCCc------------------------------------------------------------ccCcc--c
Confidence 999887632000 00011 1
Q ss_pred EEEEEEcCCC-eEEEEeCCCc-------------EEEEeCCCCeE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 391 VLDLSWSKNG-FLLSSSADKT-------------VRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~-------------V~iWdl~s~~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
...++|+||| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 170 ~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 248 (695)
T 2bkl_A 170 YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRG 248 (695)
T ss_dssp TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEET
T ss_pred ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCC
Confidence 1468999999 8888888776 99999998762 23332 456899999999 899888877666
Q ss_pred ----cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeC----CCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 452 ----KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM----TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 452 ----~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~----dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
.|++|+..+++...+..+...+....+ ++|. |++.+. ++.|.+||+.++.......+ +.. .....+
T Consensus 249 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~---~~~~~l 322 (695)
T 2bkl_A 249 WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPE---DSSASL 322 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECC---CSSCEE
T ss_pred CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecC---CCCCeE
Confidence 788888777666666666666666666 6777 655554 57899999987642000000 110 113457
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe----CCCcEEEEEcCCCC
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS----EDSNIYIWNYSNQD 598 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs----~Dg~I~iWd~~~~~ 598 (755)
..++|+ ++.++++...|+..+||.................+.+..++++|+++.|+... ..+.|++||+.+++
T Consensus 323 ~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 323 LSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788887 56788888999988888654211112211122356677888999998776332 35789999998876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=154.41 Aligned_cols=191 Identities=9% Similarity=0.051 Sum_probs=133.0
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEE-------------------EEEeeCCCCEEEEE-----
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTS-------------------VAFNPVDDNYFISG----- 447 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~-------------------i~fsp~d~~~l~sg----- 447 (755)
+.|+|++ .|+.++.++.|++||+.+++....+. +...... +.|+| +++.++.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~ 164 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHT 164 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHT
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccC
Confidence 6799999 88899999999999999988776665 3332222 24556 55555443
Q ss_pred eCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEEEeCC------CcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 448 SIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIVGTMT------GNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 448 s~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~gs~d------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
..+..|++||+.+++...+..+...+..+.|+| +++.|+..+.+ ..|.+||+.++..... .. ....
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~--~~~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-----KE--HAEG 237 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-----SC--CCTT
T ss_pred CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-----ec--cCCC
Confidence 356689999999988776666777899999999 88877776653 3588899876653221 11 0012
Q ss_pred CCeEEEEEcCCCCCEEEEEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEec-CCCEEEEEe----------
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTS-DGKHVVSPS---------- 584 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp-dg~~L~sgs---------- 584 (755)
..+..+.|+| +++.|+..+.+ +.|++||..+........ .. ... +.|+| ||++|++++
T Consensus 238 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 238 ESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-SEE-EEEECSSSSEEEEEECCC-------
T ss_pred ccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-CCC-CCccCCCCceEEEecCCcceeeccc
Confidence 3578899999 77766665443 349999987654333221 11 123 89999 999988765
Q ss_pred ------CCCcEEEEEcCCCC
Q 004410 585 ------EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ------~Dg~I~iWd~~~~~ 598 (755)
.++.|++||+.+++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp ---CCCCCCEEEEEETTTTB
T ss_pred cccccCCCCcEEEEecccCc
Confidence 34789999998765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-14 Score=163.94 Aligned_cols=258 Identities=10% Similarity=0.030 Sum_probs=169.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEE--cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASG--GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSg--s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
+.+.+|...|..++|++++-++++. +.++...||....+.....+..+....
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------------------------- 70 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNV-------------------------- 70 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCB--------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccc--------------------------
Confidence 3466799999999999987777777 668899999864333222211110000
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc--CCC-e-EEEEeC-CCcEEEEeCC--C-CeEEEEEe-
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--KNG-F-LLSSSA-DKTVRLWQVG--I-DRCLRVFS- 426 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s--~~~-~-L~s~s~-Dg~V~iWdl~--s-~~~~~~~~- 426 (755)
......+.+. ...|+ ||| . |+.++. +..|.+|++. . ++......
T Consensus 71 -------------------------~~~~~~~~~~--~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~ 123 (662)
T 3azo_A 71 -------------------------RNRVFEYSGF--PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV 123 (662)
T ss_dssp -------------------------CCCGGGTCCC--CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC
T ss_pred -------------------------cccccccCCc--cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC
Confidence 0000111111 34454 888 6 665554 5667777776 3 44433333
Q ss_pred ----cCCcEEEEEEeeCCCCEEEEEeCC----------CcEEEEEcCC------CeEEEec-cCCcceEEEEEccCCCeE
Q 004410 427 ----HNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRR------CQVVDYT-DIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 427 ----h~~~V~~i~fsp~d~~~l~sgs~D----------g~V~iwdl~~------~~~~~~~-~~~~~V~~v~~spdg~~l 485 (755)
|...+..++|+| |++.|++++.+ ..|++||+.+ ++...+. .+...+..++|+|||++|
T Consensus 124 ~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 124 SAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp CCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEE
T ss_pred ccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEE
Confidence 566789999999 99999988877 5899999998 7776666 666788899999999999
Q ss_pred EEEeCCC--------cEEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC--cEEEEECCcce
Q 004410 486 IVGTMTG--------NCRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS--LVRVLCGENVV 554 (755)
Q Consensus 486 a~gs~dg--------~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg--~I~iwd~~~~~ 554 (755)
+.++.++ .|++||+. ++.......+ ...+...+..+.|+| |+++++++..++ .|.+||..+..
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-----~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-----LGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-----EEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-----CCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCc
Confidence 9877553 79999998 5622111111 111245788999999 777888888888 45555543332
Q ss_pred eeEEEeeeccCCc--------eEEEEEecCCCEEEEEeCCCcEEEE--EcCCCC
Q 004410 555 GKFKASAFRVAGS--------QMFATFTSDGKHVVSPSEDSNIYIW--NYSNQD 598 (755)
Q Consensus 555 ~~~~~~~~~~~~~--------v~~l~fspdg~~L~sgs~Dg~I~iW--d~~~~~ 598 (755)
.. .....+... +..++|+++++++++++. +.++|| |+.+++
T Consensus 277 ~~--~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 277 AT--QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp EE--ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred ee--ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 21 111111111 457899999999999999 999999 544443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=138.84 Aligned_cols=267 Identities=7% Similarity=-0.048 Sum_probs=182.4
Q ss_pred eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeE
Q 004410 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333 (755)
Q Consensus 254 s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~ 333 (755)
+.++.|.++|..+.... ...+....-.........|.+. +++++++...++.|.+||..+++.+..+.
T Consensus 14 ~~~~~l~~~d~~t~~~~-~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---------- 81 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVE-NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---------- 81 (328)
T ss_dssp SCCBEEEEEETTTTEEE-CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----------
T ss_pred CCCceEEEEECCCCEEh-hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----------
Confidence 34889999998765421 1111000000112346777774 45566666778999999998887544331
Q ss_pred EeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe-CCCcEE
Q 004410 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVR 412 (755)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s-~Dg~V~ 412 (755)
.......+++++++.++.+. .++.|.
T Consensus 82 -----------------------------------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 82 -----------------------------------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp -----------------------------------------------------CCSSEEEEEEEETTEEEEEEBSCSEEE
T ss_pred -----------------------------------------------------CCCCCcEEEEeCCCeEEEEECCCCeEE
Confidence 12456778898888555555 899999
Q ss_pred EEeCCCCeEEEEEecCC------cEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeE
Q 004410 413 LWQVGIDRCLRVFSHNN------YVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 413 iWdl~s~~~~~~~~h~~------~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+||+.+++....+.... ....+++ . ++.++++.. .++.|.++|+.+++++...........++++|+|+++
T Consensus 109 ~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 109 IINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMW 186 (328)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEE
T ss_pred EEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEE
Confidence 99999999888776444 6677887 4 555555554 4899999999999887655555567789999999876
Q ss_pred EEEeCC----------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 486 IVGTMT----------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 486 a~gs~d----------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
+++..+ +.|.++|..++++.....+ ........++|+| +++.|+++.. .|.+||..+...
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-------~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-------KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-------CTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSC
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEec-------CCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCce
Confidence 665554 7899999999887643221 1124678999999 7777777654 899999876432
Q ss_pred eEEEeeeccCCceEEEEEec-CCCEEEEE----eCCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTS-DGKHVVSP----SEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fsp-dg~~L~sg----s~Dg~I~iWd~~~~~ 598 (755)
...............++++| ++.++++. ..++.|.+||.. ++
T Consensus 257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11110011135678999999 55666665 578999999987 65
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-12 Score=133.91 Aligned_cols=242 Identities=10% Similarity=0.029 Sum_probs=167.8
Q ss_pred eeeecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------ 62 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------ 62 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE------------------------------------
Confidence 34455666788999999998 7888889999999998654 11
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCc
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-----HNNY 430 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~ 430 (755)
.+..+...+.++++++++ .+++...++.|.+||..+++...... ....
T Consensus 63 --------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 116 (296)
T 3e5z_A 63 --------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNS 116 (296)
T ss_dssp --------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCC
T ss_pred --------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCC
Confidence 122345568899999999 55555556899999998887655442 2245
Q ss_pred EEEEEEeeCCCCEEEEE----e-------------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCc
Q 004410 431 VTSVAFNPVDDNYFISG----S-------------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493 (755)
Q Consensus 431 V~~i~fsp~d~~~l~sg----s-------------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~ 493 (755)
+..++++| +++++++. + ..+.|..++.. ++.............++|+|+|+.+++.+.++.
T Consensus 117 ~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~ 194 (296)
T 3e5z_A 117 PNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA 194 (296)
T ss_dssp CCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTE
T ss_pred CCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCe
Confidence 67899999 89988873 3 13466666665 555555566667899999999999977777899
Q ss_pred EEEEECC-CCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEE
Q 004410 494 CRFYDIK-DNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFAT 572 (755)
Q Consensus 494 I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~ 572 (755)
|.+||+. ++.+...... +. .....+.++++.+ ++.++++. ++.|.+|+.... ..... ..+.. +.+++
T Consensus 195 i~~~~~~~~g~~~~~~~~-~~----~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~-~~~~~--~~~~~-~~~~~ 262 (296)
T 3e5z_A 195 THRYCLNARGETEYQGVH-FT----VEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGD-ELGRV--LTPQT-TSNLC 262 (296)
T ss_dssp EEEEEECSSSCEEEEEEE-EC----CSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSC-EEEEE--ECSSC-CCEEE
T ss_pred EEEEEECCCCcCcCCCeE-ee----CCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCC-EEEEE--ECCCC-ceeEE
Confidence 9999997 4544011111 11 1334567899999 77755555 889999997632 22222 33444 88999
Q ss_pred E-ecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 573 F-TSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 573 f-spdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
| +|+++.|++++.+ .|.-++..+.+
T Consensus 263 f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 263 FGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp EESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred EECCCCCEEEEEcCC-eEEEEEccccc
Confidence 9 5899999988876 45555555443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-13 Score=156.34 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=168.4
Q ss_pred cccccEEEEEEecCCCEEEEEcCCC-----cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDG-----TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+|...+..++|||||++||.+..++ .|++||+.+++.....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------------------------- 167 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------------------------- 167 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 4556789999999999999876543 8999999888643210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCc----------------EEEEeCCCC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKT----------------VRLWQVGID 419 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~----------------V~iWdl~s~ 419 (755)
+.. ..+..++|+||| .|+.++.++. |++|++.++
T Consensus 168 ---------------------------~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 168 ---------------------------LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp ---------------------------EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred ---------------------------ccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 000 114568999999 8888887766 999999887
Q ss_pred eE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeC-----CCcEEEEEcCC------C--eEEEeccCCcceEEEEEccC
Q 004410 420 RC--LRVFS---HNNYVTSVAFNPVDDNYFISGSI-----DGKVRIWEVRR------C--QVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 420 ~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~-----Dg~V~iwdl~~------~--~~~~~~~~~~~V~~v~~spd 481 (755)
+. ...+. +...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 62 22332 456688999999 9998887765 56899999986 4 34555555555554 58899
Q ss_pred CCeEEEEeCCC----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE--EEEECCccee
Q 004410 482 GKGGIVGTMTG----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV--RVLCGENVVG 555 (755)
Q Consensus 482 g~~la~gs~dg----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I--~iwd~~~~~~ 555 (755)
|+.|+..+..+ .|.+||+.++.... .. .+... .....+..+.|++ ++.++++...++.. .+|+..+...
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~-~l~~~--~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESK-WK-VLVPE--HEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGG-CE-EEECC--CSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCccc-ce-eccCC--CCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 99888876543 59999998763200 00 01110 0113578899986 77788888888854 5566544332
Q ss_pred eEEEeeeccCCceEEEEEecCCCEEEEE-e---CCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDGKHVVSP-S---EDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg~~L~sg-s---~Dg~I~iWd~~~~~ 598 (755)
.... ..+.+.+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIF--PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEE--CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEec--CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2222 3346778889999999876633 2 35789999998876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-13 Score=144.84 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=169.3
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeec------ccccEEEEEEecCCCEEEEEc
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLA------HEGSILTMKFSLDGQYLASGG 303 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~------H~~~V~~l~fspdg~~LaSgs 303 (755)
.++|+|||++|+++. .++.|.+||..+... .+++.. +......++|+|||++|+++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------EEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 589999999998876 367899999764321 122221 223456789999999999886
Q ss_pred C--CCcEEEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 304 E--DGTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 304 ~--Dg~I~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
. ++.|.+||+.+++.+.. +...
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~~------------------------------------------------------- 151 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAAA------------------------------------------------------- 151 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGGT-------------------------------------------------------
T ss_pred CCCCCeEEEEECCCCcEEEEEecCC-------------------------------------------------------
Confidence 4 57999999988865543 2210
Q ss_pred ceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEE------e-cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVF------S-HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~------~-h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
....+.+.|++ .+++.+.||.+.+|++.. ++..... . .... ..+.+.| ++..++..+.+
T Consensus 152 ---------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~g~~~~~~~~~ 220 (361)
T 2oiz_A 152 ---------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL-DKDKAHFVSYY 220 (361)
T ss_dssp ---------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE-CSSEEEEEBTT
T ss_pred ---------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecc-cCCEEEEEeCC
Confidence 01123455554 667778888888888754 5444221 1 1111 2233466 67777777889
Q ss_pred CcEEEEEcCCCeEE--E-eccC----------CcceEEEEEccCCCeEEEEeC-----------CCcEEEEECCCCeEee
Q 004410 451 GKVRIWEVRRCQVV--D-YTDI----------REIVSAVCYCPDGKGGIVGTM-----------TGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 451 g~V~iwdl~~~~~~--~-~~~~----------~~~V~~v~~spdg~~la~gs~-----------dg~I~iwD~~~~~~~~ 506 (755)
+.|.++|+...... . +... ......++|+|+++.++++.. .+.|.+||+.+++.+.
T Consensus 221 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~ 300 (361)
T 2oiz_A 221 GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA 300 (361)
T ss_dssp SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence 99999999754322 1 1100 011123789999998887654 3479999999998776
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~ 578 (755)
.... +. ..+++|+| ++++|+++.. +.|.+||..+...+..............++++|+|+
T Consensus 301 ~i~~--------~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 301 RIPG--------RD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEC--------TT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEec--------CC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 4321 22 89999999 8888888876 999999998862233332234566778899999986
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-11 Score=126.04 Aligned_cols=277 Identities=6% Similarity=0.042 Sum_probs=190.5
Q ss_pred ccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 236 DRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
..+.+++++|+|.++++...++.|.+|+.. .. +..+ .+..+...+.+|+++++|.++++...++.|..|+..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345568999999987776668899999976 22 1111 112245679999999999988888778889999864
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++. ..+. +..+...+..++
T Consensus 87 g~~-~~~~------------------------------------------------------------~~~~~~~~~~i~ 105 (299)
T 2z2n_A 87 GII-KEYT------------------------------------------------------------LPNPDSAPYGIT 105 (299)
T ss_dssp SCE-EEEE------------------------------------------------------------CSSTTCCEEEEE
T ss_pred CcE-EEEe------------------------------------------------------------CCCcCCCceeeE
Confidence 221 1100 011234678899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCC
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIR 470 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~ 470 (755)
+.+++ .+++...++.|.+||. +++..... .....+..+++.+ +++++++...++.|..||. +++.... ....
T Consensus 106 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 182 (299)
T 2z2n_A 106 EGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPA 182 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred ECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCC
Confidence 99988 4455556789999998 55544332 2456789999998 8888887777889999999 6665543 2334
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..+..++++++|...++...++.|.+||. ++.... . .. ......+.++++.+ ++.++++...++.|.+||.
T Consensus 183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~--~~----~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-F--KI----PTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E--EC----SSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-E--EC----CCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence 56889999999987666666889999999 665432 1 11 12346789999999 6776666557889999998
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
......+.. ..+...+.++++ ++|.++++.. .+.|..++..++
T Consensus 254 ~g~~~~~~~--~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 254 NNIIEEYPI--QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEC--SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCceEEEeC--CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 432222211 234467889999 8888777665 577888887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-11 Score=136.57 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=194.6
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECC--CCcccccccccceeeecccccEEEEEEe----cCCCEEEEEcC-CCcEEEE
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFS----LDGQYLASGGE-DGTVRVW 311 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~--~~~~~~~~~~~~~~l~~H~~~V~~l~fs----pdg~~LaSgs~-Dg~I~vW 311 (755)
..+.|+|||+++++++.++.|.+||+. +. +.+ .++.... ....++|+ |||++|+++.. ++.|.|+
T Consensus 200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v------~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTV------AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEE------EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred cceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEe------EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 358999999999999999999999985 22 111 2333322 35789999 69999888775 4899999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCC
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSE 390 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~ 390 (755)
|..+.+.+..+....... .....| ...
T Consensus 272 D~~t~~~~~~i~~~~~~~----------------------------------------------------~~~~~~p~~r 299 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTY----------------------------------------------------DEQEYHPEPR 299 (567)
T ss_dssp ETTTCCEEEEEECCEECT----------------------------------------------------TTCCEESCCC
T ss_pred ECCCCcEEEEEecccccc----------------------------------------------------ccccccCCCc
Confidence 998887765544211000 000012 125
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCCCEEEEEe-CCCcEEEEEcCCCeEEE
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGS-IDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs-~Dg~V~iwdl~~~~~~~ 465 (755)
+..+..++++ .++....+|.|.++|....+.+. .+.......++.|+| ++++|+++. .+++|.++|+.+++++.
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 6677788876 56666778999999988764433 334666788999999 888877665 57899999999998774
Q ss_pred eccC------CcceEEEEEccCCCeEEE-Ee-CCCcEEEEECCC-------CeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 466 YTDI------REIVSAVCYCPDGKGGIV-GT-MTGNCRFYDIKD-------NQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 466 ~~~~------~~~V~~v~~spdg~~la~-gs-~dg~I~iwD~~~-------~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.... ...... -++|++..+++ +. .++.|.++|... .+.+..... .+..-..+..+|
T Consensus 379 ~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~--------~g~g~~~i~~~p 449 (567)
T 1qks_A 379 IEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA--------LGGGSLFIKTHP 449 (567)
T ss_dssp EEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--------SCSCCCCEECCT
T ss_pred EEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec--------CCCCCEEEEeCC
Confidence 3332 111112 26887555544 43 468999999987 334332211 112223466889
Q ss_pred CCCCEEEEEEC-------CCcEEEEECCcc-----eeeEEEeee-------ccCCceEEEEEecCCCEEEEEe-----CC
Q 004410 531 SDPSKVIVTSA-------DSLVRVLCGENV-----VGKFKASAF-------RVAGSQMFATFTSDGKHVVSPS-----ED 586 (755)
Q Consensus 531 ~d~~~l~s~s~-------Dg~I~iwd~~~~-----~~~~~~~~~-------~~~~~v~~l~fspdg~~L~sgs-----~D 586 (755)
+++++.+... .+.|.|+|..+. ...+..... .....+..+.|+++|+++..+. .+
T Consensus 450 -~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~ 528 (567)
T 1qks_A 450 -NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQE 528 (567)
T ss_dssp -TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSC
T ss_pred -CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCC
Confidence 8888888763 459999998876 322222111 1235788999999999887763 37
Q ss_pred CcEEEEEcCCCC
Q 004410 587 SNIYIWNYSNQD 598 (755)
Q Consensus 587 g~I~iWd~~~~~ 598 (755)
+.|.|+|..+.+
T Consensus 529 ~~i~v~D~~t~~ 540 (567)
T 1qks_A 529 SALVVVDDKTLE 540 (567)
T ss_dssp CEEEEEETTTTE
T ss_pred CcEEEEECCCce
Confidence 999999999876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-12 Score=129.58 Aligned_cols=239 Identities=10% Similarity=0.004 Sum_probs=168.1
Q ss_pred cEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 286 SILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 286 ~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...+|+++++|++++ +...++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678899999999777 54778899999864432100 0
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+..++++| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011223456789999885544444889999998766543222 2336789999999 8888
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEe-ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~-~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+++...++.|.+|+..+...... ......+..++++++|+.+++...++.|.+||..+...... .......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 88877889999998766544322 22234678899999998777666788999999987654321 1112256
Q ss_pred eEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 523 I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++++.+ ++.++++...++.|.+|+.......... ..+...+.+++++++|+++++...++.|+++++...+
T Consensus 194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECC--CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeec--cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 88999999 6777777777899999998654332211 2233568999999999988999999999999987654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-12 Score=130.88 Aligned_cols=224 Identities=12% Similarity=0.042 Sum_probs=156.8
Q ss_pred CcceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 238 HGSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 238 ~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
..+++|+|+|+ +++++..++.|.+|+.... . +.+..+...+.+|+|+|+|+++++...++.|.+||..++
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 34589999998 7888888999999997654 1 234456778999999999999888877889999998776
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+........ .......+.++++
T Consensus 101 ~~~~~~~~~----------------------------------------------------------~~~~~~~~~~i~~ 122 (296)
T 3e5z_A 101 EWESIADSF----------------------------------------------------------EGKKLNSPNDVCL 122 (296)
T ss_dssp CEEEEECEE----------------------------------------------------------TTEECCCCCCEEE
T ss_pred cEEEEeecc----------------------------------------------------------CCCCCCCCCCEEE
Confidence 532110000 0001234567889
Q ss_pred cCCC-eEEE----Ee-------------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 397 SKNG-FLLS----SS-------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 397 s~~~-~L~s----~s-------------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.++| .+++ ++ ..+.|..++.. ++......+......++|+| +++++++.+.++.|++|++
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~ 200 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCL 200 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEE
Confidence 9999 4444 22 13456666665 55555556777889999999 8888877888899999999
Q ss_pred C-CCeE---E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE-cCCC
Q 004410 459 R-RCQV---V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF-SPSD 532 (755)
Q Consensus 459 ~-~~~~---~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f-sp~d 532 (755)
. ++.+ . .+......+..++++++|++.++. ++.|.+||.. ++.+..+ ..+.. +++++| .| +
T Consensus 201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--------~~~~~-~~~~~f~~~-d 267 (296)
T 3e5z_A 201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--------LTPQT-TSNLCFGGP-E 267 (296)
T ss_dssp CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--------ECSSC-CCEEEEEST-T
T ss_pred CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--------ECCCC-ceeEEEECC-C
Confidence 7 4544 1 122344556789999999855554 8899999987 4443321 12334 888999 46 8
Q ss_pred CCEEEEEECCC
Q 004410 533 PSKVIVTSADS 543 (755)
Q Consensus 533 ~~~l~s~s~Dg 543 (755)
++.|++++.++
T Consensus 268 ~~~L~v~t~~~ 278 (296)
T 3e5z_A 268 GRTLYMTVSTE 278 (296)
T ss_dssp SCEEEEEETTE
T ss_pred CCEEEEEcCCe
Confidence 88888888764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=152.80 Aligned_cols=282 Identities=14% Similarity=0.059 Sum_probs=173.6
Q ss_pred ecCCCCeeEEeeCCCe---EEEEECCCC---ccccccc-ccceeeecccccEEEEEEecCCCEEEEEcCC-----CcEEE
Q 004410 243 LKPGDHELTLGQRMRR---VRVHPVKKQ---SRELSSL-YTGQEFLAHEGSILTMKFSLDGQYLASGGED-----GTVRV 310 (755)
Q Consensus 243 ~spdg~~lasgs~dg~---V~Vw~~~~~---~~~~~~~-~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-----g~I~v 310 (755)
.+|+|++++....++. ..+|..... ......+ ...+.-.+|...+..++|||||++||.+..+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 3499998887654332 455543211 1101100 0000112355578999999999999987654 46999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++.+... + +...
T Consensus 194 ~dl~tg~~~~~~----------------------------------------------------------~-----~~~~ 210 (741)
T 1yr2_A 194 VGVADGKPLADE----------------------------------------------------------L-----KWVK 210 (741)
T ss_dssp EETTTCCEEEEE----------------------------------------------------------E-----EEEE
T ss_pred EECCCCCCCCcc----------------------------------------------------------C-----CCce
Confidence 999888643210 0 0001
Q ss_pred EEEEEEcCCCeEEEEeCCC--------------cEEEEeCCCCeE--EEEEe---cCCcEEEEEEeeCCCCEEEEEeCCC
Q 004410 391 VLDLSWSKNGFLLSSSADK--------------TVRLWQVGIDRC--LRVFS---HNNYVTSVAFNPVDDNYFISGSIDG 451 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg--------------~V~iWdl~s~~~--~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg 451 (755)
+..++|+||..|+.++.++ .|++|++.+++. ...+. +...+..+.|+| ++++|+..+.++
T Consensus 211 ~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECT
T ss_pred eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEcc
Confidence 2346788876555555544 389999987752 23333 334689999999 999888777544
Q ss_pred -----cEEEEEcCCC--e-EEEeccCCcceEEEEEccCCCeEEEEeCC----CcEEEEECCCCe-EeeeeeEEecccccC
Q 004410 452 -----KVRIWEVRRC--Q-VVDYTDIREIVSAVCYCPDGKGGIVGTMT----GNCRFYDIKDNQ-LYQQNQICLQGKKKL 518 (755)
Q Consensus 452 -----~V~iwdl~~~--~-~~~~~~~~~~V~~v~~spdg~~la~gs~d----g~I~iwD~~~~~-~~~~~~~~~~~~~~~ 518 (755)
.|++||+.++ + ...+..+...+.... +|+|+.|+..+.+ +.|.+||+.++. .... .+. .
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---l~~----~ 361 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT---VVP----E 361 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE---EEC----C
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE---Eec----C
Confidence 8999999877 5 555555555555553 4999999888764 459999998742 1111 111 1
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE----eCCCcEEEEEc
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP----SEDSNIYIWNY 594 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg----s~Dg~I~iWd~ 594 (755)
+...+..+.+. ++.++++...|+..+||.................+.+..++++|+++.|+.. ...+.|++||+
T Consensus 362 ~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 362 SKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp CSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred CCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 22346677776 5578888888998887765421112222112245678889999998866532 23578999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+++
T Consensus 440 ~tg~ 443 (741)
T 1yr2_A 440 ATAK 443 (741)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-10 Score=124.45 Aligned_cols=284 Identities=10% Similarity=-0.005 Sum_probs=183.8
Q ss_pred ecCCCCeeEEeeC--CC---eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCc
Q 004410 243 LKPGDHELTLGQR--MR---RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGT 307 (755)
Q Consensus 243 ~spdg~~lasgs~--dg---~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~ 307 (755)
..|+++++++... .. .|.++|..+... + .++.....+ .++++|||++|+.+. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-~------~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-L------GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeE-E------EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 4477776666543 22 889999775432 1 233333333 899999999999885 3678
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
|.+||..+.+.+..+..... .. +. +
T Consensus 99 v~viD~~t~~~~~~i~~~~~-----------------------------------------------------~~-~~-~ 123 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELPDA-----------------------------------------------------PR-FD-V 123 (373)
T ss_pred EEEEECCCCcEEEEEECCCc-----------------------------------------------------cc-cc-c
Confidence 99999987776554432100 00 00 1
Q ss_pred CCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
......++|+|+| +|+.+.. ++.|.++| .+++.+.. +.... ++.+.|...+.+++.+.||++.++|. +++.
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~ 198 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA 198 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence 1223478999999 7777664 57899999 99998887 65433 24556645567788889999999999 7776
Q ss_pred EEecc------CCcc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc----ccCCCCCeEEEEEcCCC
Q 004410 464 VDYTD------IREI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK----KKLPGKRITGFQFSPSD 532 (755)
Q Consensus 464 ~~~~~------~~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~----~~~~~~~I~~v~fsp~d 532 (755)
+.... .... .....+.+++..++..+..+.+.+.|+.+........+.+... ..........+.++| +
T Consensus 199 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d 277 (373)
T 2mad_H 199 AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-S 277 (373)
T ss_pred EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-C
Confidence 62211 1111 2335677777666666678899999997654322111111110 000112244578899 6
Q ss_pred CCEEEEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCCc
Q 004410 533 PSKVIVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQDK 599 (755)
Q Consensus 533 ~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~~ 599 (755)
+..+++... .+.|.++|..+....... ........++|+|||+ +++++. .++.|.+||+.+++.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 676666543 357999998876554443 2233578999999999 777777 589999999998873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-11 Score=135.09 Aligned_cols=278 Identities=10% Similarity=0.057 Sum_probs=186.4
Q ss_pred ecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc--CCeeee
Q 004410 243 LKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI--EHERLD 320 (755)
Q Consensus 243 ~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~--~~~~~~ 320 (755)
.+|.+.++++...++.|.|+|..+... + .++.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v-~------~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEI-K------TVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCE-E------EEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeE-E------EEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 345556777778899999999875432 1 12221 2346689999999999999999999999985 554332
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc---
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS--- 397 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s--- 397 (755)
++. . ......++|+
T Consensus 235 ~i~--------------------------------------------------------------~-G~~P~~ia~s~~~ 251 (567)
T 1qks_A 235 EIK--------------------------------------------------------------I-GSEARSIETSKME 251 (567)
T ss_dssp EEE--------------------------------------------------------------C-CSEEEEEEECCST
T ss_pred EEe--------------------------------------------------------------c-CCCCceeEEcccc
Confidence 221 1 1234678999
Q ss_pred -CCC-eEEEE-eCCCcEEEEeCCCCeEEEEEec------------CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 398 -KNG-FLLSS-SADKTVRLWQVGIDRCLRVFSH------------NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 398 -~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~h------------~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
|+| +++++ ..+++|.++|..+.+.++.+.- ...+..+.+++....+++....+|+|.++|..+..
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 688 55544 4669999999999999887741 12678888888444555666677999999998754
Q ss_pred EE--EeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VV--DYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~--~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.. ...........+.|+|+|++|+++. .++.|.++|+.++++..... ..+ ...|...-..+ ++|..+...++.
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--vgg-~~Phpg~g~~~-~~p~~g~v~~t~ 407 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--TGG-QTPHPGRGANF-VHPTFGPVWATS 407 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--CSS-SSBCCTTCEEE-EETTTEEEEEEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--ccC-cCCCCccceee-ECCCCCcEEEeC
Confidence 32 2333445677899999999988766 57889999999998765432 101 12222222222 577334444444
Q ss_pred E-CCCcEEEEECCc-------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeC-------CCcEEEEEcCCC
Q 004410 540 S-ADSLVRVLCGEN-------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE-------DSNIYIWNYSNQ 597 (755)
Q Consensus 540 s-~Dg~I~iwd~~~-------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~-------Dg~I~iWd~~~~ 597 (755)
. .++.|.++|... ....... ......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i--~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSF--PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEE--ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEE--ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 3 468999999876 2222222 212222244678999999998763 459999999876
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-12 Score=134.80 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=126.9
Q ss_pred CEEEEEEcCCC-eEEEEeCC---C--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-------------
Q 004410 390 EVLDLSWSKNG-FLLSSSAD---K--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------------- 450 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~D---g--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------------- 450 (755)
.+..++|+|+| .|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEccc
Confidence 46789999999 77776654 2 48888999988877776555 99999999 89888887642
Q ss_pred --------------CcEEEEEcCCCeE-EEeccCCcceEEEEEccCCCeEEEEeCCC-------cEEEEECCCCeEeeee
Q 004410 451 --------------GKVRIWEVRRCQV-VDYTDIREIVSAVCYCPDGKGGIVGTMTG-------NCRFYDIKDNQLYQQN 508 (755)
Q Consensus 451 --------------g~V~iwdl~~~~~-~~~~~~~~~V~~v~~spdg~~la~gs~dg-------~I~iwD~~~~~~~~~~ 508 (755)
..|++||+.+++. ..+.. . .+..++|+||| .++++..++ ...||.+.+++....
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l- 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM- 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE-
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe-
Confidence 5799999999887 44444 3 78899999999 777775542 334444335543221
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECC--------CcEEEEECCcceeeEEEeeeccCCceEE-EEEecCCCE
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--------SLVRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKH 579 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~ 579 (755)
. . + ..+..+ +| ++++|+.++.+ ..|.+|| +. ........+...+.. +.|+ || +
T Consensus 214 ~----~----~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~~~~l~~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 214 F----E----K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GK--EVMGILDEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp E----E----E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SS--CEEESSTTCCSEEEEEEEET-TE-E
T ss_pred c----c----C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CC--ceEeccccCCcccCCccEEc-Cc-E
Confidence 1 1 1 234443 88 77777776644 3677787 22 222222345567776 8999 98 9
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 004410 580 VVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 580 L~sgs~Dg~I~iWd~~~~ 597 (755)
+++++.++.++|| +.++
T Consensus 276 ~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEEEETTEEEEE-EESS
T ss_pred EEEEecCCcEEEE-EcCC
Confidence 9999999999999 8743
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-11 Score=124.76 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=167.5
Q ss_pred cccEEEEEEecCCCEEEE-------EcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 284 EGSILTMKFSLDGQYLAS-------GGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaS-------gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
-....+++|+++|+++++ +..++.|.+|+..+++... +..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~-------------------------------- 63 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK-------------------------------- 63 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC--------------------------------
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe--------------------------------
Confidence 345678999999988887 5678899999976664311 000
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC-CeEEEEeCCCcEEEEeCCCCeEEEE-Ee-----cCC
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN-GFLLSSSADKTVRLWQVGIDRCLRV-FS-----HNN 429 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~-~~L~s~s~Dg~V~iWdl~s~~~~~~-~~-----h~~ 429 (755)
....++...+.++++.++ +.|+.++....|.+||.. ++.... .. ...
T Consensus 64 -------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 117 (314)
T 1pjx_A 64 -------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQ 117 (314)
T ss_dssp -------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCB
T ss_pred -------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCcccc
Confidence 001123356889999999 766666666689999998 766544 32 124
Q ss_pred cEEEEEEeeCCCCEEEEEeCC---------------CcEEEEEcCCCeEEEeccCCcceEEEEEc----cCCCeEEEE-e
Q 004410 430 YVTSVAFNPVDDNYFISGSID---------------GKVRIWEVRRCQVVDYTDIREIVSAVCYC----PDGKGGIVG-T 489 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~D---------------g~V~iwdl~~~~~~~~~~~~~~V~~v~~s----pdg~~la~g-s 489 (755)
.+.++++++ +++++++...+ +.|..||.. ++.............++++ |+|+.|+++ .
T Consensus 118 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 118 GCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence 588999999 88888877655 567788776 5555444444557889999 999776665 4
Q ss_pred CCCcEEEEECC-CCeEeeeeeEEecccccCCC-CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCc
Q 004410 490 MTGNCRFYDIK-DNQLYQQNQICLQGKKKLPG-KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGS 567 (755)
Q Consensus 490 ~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~-~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 567 (755)
.++.|.+||+. ++......... ....+. ..+..+++.+ ++.++++...++.|.+||..+....... ..+...
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~--~~~~~~ 269 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWG---HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRI--RCPFEK 269 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEE---ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEE--ECSSSC
T ss_pred CCCeEEEEECCCCCccccceEEE---ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEE--eCCCCC
Confidence 67899999986 44432111110 011122 4578899999 7888888888899999998743322222 224467
Q ss_pred eEEEEEecCCCEEE-EEeCCCcEEEEEcCCC
Q 004410 568 QMFATFTSDGKHVV-SPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 568 v~~l~fspdg~~L~-sgs~Dg~I~iWd~~~~ 597 (755)
+.+++|+++|++|+ +...++.|..|++...
T Consensus 270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999999554 5556789999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-10 Score=117.02 Aligned_cols=274 Identities=8% Similarity=0.075 Sum_probs=186.1
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+++++++|.+.++...++.|.+|+.. .. +..+ .+..+...+.+|+++++|+++++...++.|.+||.. +
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GR--IKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34458899999988877778999999976 22 1111 122344678999999999988887778889999875 4
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.. .+. +......+.++++
T Consensus 93 ~~~-~~~------------------------------------------------------------~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 93 GFT-EYP------------------------------------------------------------LPQPDSGPYGITE 111 (300)
T ss_dssp CEE-EEE------------------------------------------------------------CSSTTCCEEEEEE
T ss_pred CeE-Eec------------------------------------------------------------CCCCCCCCccceE
Confidence 321 110 0112345788999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEE-Ee-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec--cCCc
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRV-FS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT--DIRE 471 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~-~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~--~~~~ 471 (755)
.+++ .+++...++.|..||.. ++.... +. ....+.++++.+ +++++++...++.|..+|. +++...+. ....
T Consensus 112 ~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 188 (300)
T 2qc5_A 112 GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAA 188 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred CCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCC
Confidence 9888 44444457899999987 555432 22 456789999999 8887777766889999998 55554332 2345
Q ss_pred ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 472 IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 472 ~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
.+..+++.++|...++....+.|.+||. ++..... .+ ......+.++++.+ ++.+.++...++.|.+++..
T Consensus 189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~~----~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY---DI----PTPNARPHAITAGK-NSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE---EC----SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT
T ss_pred CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE---EC----CCCCCCceEEEECC-CCCEEEeccCCCeEEEECCC
Confidence 6899999999976666666778999998 4443321 11 12345688999999 67766666567899999974
Q ss_pred cceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 552 NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 552 ~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.....+.. ......+.+++++++|+++++.. . .|..+|..
T Consensus 260 g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 260 NTIQEYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp SCEEEEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CcEEEEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 32222221 22345678899999998766655 4 77777653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-12 Score=133.65 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=143.6
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSID----GKVRIWE 457 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~D----g~V~iwd 457 (755)
+..+...+.+++|++++ .++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+||
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence 44566677899999999 5556778899999999988876655 4678899999999 88888877766 6899999
Q ss_pred cCCCeEEEec---cCCcceEEEEEccCCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 458 VRRCQVVDYT---DIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 458 l~~~~~~~~~---~~~~~V~~v~~spdg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
..++...... .....+..++++|+|+.+++... .+.|..||..+++...... ....+..++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~i~~ 189 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---------NISVANGIAL 189 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------EESSEEEEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---------CCCcccceEE
Confidence 9887655221 23456899999999987766543 3567777776654432110 1135788999
Q ss_pred cCCCCCEE-EEEECCCcEEEEECCcc---eeeEEEe-e--eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 529 SPSDPSKV-IVTSADSLVRVLCGENV---VGKFKAS-A--FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 529 sp~d~~~l-~s~s~Dg~I~iwd~~~~---~~~~~~~-~--~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
+| +++.+ ++...++.|.+|+.... ...+... . ......+..++++++|+++++...++.|.+||.+
T Consensus 190 ~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 190 ST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp CT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 99 77655 44556789999998531 1111100 0 1111467889999999998888888999999974
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=144.36 Aligned_cols=240 Identities=8% Similarity=0.016 Sum_probs=158.6
Q ss_pred CcceeecCCCCeeEEeeCCC-----eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc-----
Q 004410 238 HGSATLKPGDHELTLGQRMR-----RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg-----~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~----- 307 (755)
+..++|||||++||.+..++ .|+||++.++..... .+ +...+..++|+|||+.|+.++.++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------EE--EEECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------cc--cCcccceEEEEeCCCEEEEEEECCcccccc
Confidence 34589999999999765533 899999876543111 11 1123667999999999999988765
Q ss_pred -----------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec
Q 004410 308 -----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL 376 (755)
Q Consensus 308 -----------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (755)
|++|++.++....
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~-------------------------------------------------------- 222 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSED-------------------------------------------------------- 222 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGC--------------------------------------------------------
T ss_pred ccccccCCCCEEEEEECCCCcccc--------------------------------------------------------
Confidence 7777776543100
Q ss_pred cCccceEecCCCCCEEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC------C--eEEEEEecCCcEEEEEEeeCCCC
Q 004410 377 LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSA-----DKTVRLWQVGI------D--RCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 377 ~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~-----Dg~V~iWdl~s------~--~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
..+.....|...+..+.|+|+| +|+.++. +..|++||+.+ + .......+...+.. .|+| +++
T Consensus 223 --~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~-dg~ 298 (710)
T 2xdw_A 223 --ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTN-EGT 298 (710)
T ss_dssp --EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEE-ETT
T ss_pred --eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEec-cCC
Confidence 0011112355567889999999 6666554 57899999976 4 33333445555554 4788 777
Q ss_pred EEEEEeCC----CcEEEEEcCCCe---EEEeccCCc--ceEEEEEccCCCeEEEEeCCCc--EEEEECCCCeEeeeeeEE
Q 004410 443 YFISGSID----GKVRIWEVRRCQ---VVDYTDIRE--IVSAVCYCPDGKGGIVGTMTGN--CRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 443 ~l~sgs~D----g~V~iwdl~~~~---~~~~~~~~~--~V~~v~~spdg~~la~gs~dg~--I~iwD~~~~~~~~~~~~~ 511 (755)
.|+..+.+ +.|.+||+.++. ...+..+.. .+..++|++++.++++...++. |.+||+.+++....+.
T Consensus 299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~-- 376 (710)
T 2xdw_A 299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP-- 376 (710)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--
Confidence 76665543 369999998763 233444433 6888999888788888888885 6667876665443221
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEE-EEEC---CCcEEEEECCcce
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVI-VTSA---DSLVRVLCGENVV 554 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~-s~s~---Dg~I~iwd~~~~~ 554 (755)
.+...+..+.++| ++..++ +.+. .+.|.+||..+..
T Consensus 377 ------~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 377 ------LEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ------CCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ------CCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2345788899999 555554 4333 4789999987644
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.2e-11 Score=122.23 Aligned_cols=213 Identities=12% Similarity=-0.014 Sum_probs=158.7
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
.+++|++++.|+.|.+||.++++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998998655443
Q ss_pred eccCccceEecCCC-CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec--CCcEEEEEEeeCCCCEEEEEeC-C
Q 004410 375 RLLEKPLHEFQGHS-SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH--NNYVTSVAFNPVDDNYFISGSI-D 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~-~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~-D 450 (755)
.+. ..+.++.+.|+|.++. +.++.|..||. +++.+..+.. ...+.++.+.| +++++++.+. +
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~ 98 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHP 98 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTT
T ss_pred -----------CCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCC
Confidence 122 3466788999994444 56788999999 8988888863 35788999999 9999999887 7
Q ss_pred CcEEEEEcCCCeEE-Eec------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 451 GKVRIWEVRRCQVV-DYT------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 451 g~V~iwdl~~~~~~-~~~------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
+.|..+|. +++.+ .+. .+......+++.++|+++++...++.|..||.. ++.+..... ....
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~~ 167 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGTP 167 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSCC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCCc
Confidence 78888886 45544 322 122245567789999999999999999999998 777654332 1244
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeec----cCCceEEEEEecCCCEEEEEe
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR----VAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----~~~~v~~l~fspdg~~L~sgs 584 (755)
.++.+.+ ++..++++..++.|..+|..+........... ....+..++..++|.++++..
T Consensus 168 ~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 168 FSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 5677788 88889888888899999988766666553111 112378888999999988874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-11 Score=124.89 Aligned_cols=235 Identities=7% Similarity=-0.013 Sum_probs=164.5
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLD 320 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~ 320 (755)
+++. ++++.++...++.|.+||..+... .+++. .......|++++++++.++...++.|.+||..+++...
T Consensus 49 i~~~-~~~lyv~~~~~~~v~viD~~t~~~-------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 49 MVIR-DGIGWIVVNNSHVIFAIDINTFKE-------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTTCCE-------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred EEEE-CCEEEEEEcCCCEEEEEECcccEE-------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 4553 345555666789999999875432 12232 23568899999999655555588999999998887654
Q ss_pred eeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 321 GFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
.+..... .++......+++ .++
T Consensus 120 ~i~~g~~---------------------------------------------------------~~~~~~p~~i~~-~~~ 141 (328)
T 3dsm_A 120 YIECPDM---------------------------------------------------------DMESGSTEQMVQ-YGK 141 (328)
T ss_dssp EEECTTC---------------------------------------------------------CTTTCBCCCEEE-ETT
T ss_pred EEEcCCc---------------------------------------------------------cccCCCcceEEE-ECC
Confidence 4432110 011112334555 345
Q ss_pred eEEEEe--CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC----------CcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSS--ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID----------GKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s--~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D----------g~V~iwdl~~~~~~~~~~ 468 (755)
.|+.+. .++.|.++|+.+++.+..+........++++| ++++++++..+ +.|.++|..++++.....
T Consensus 142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 142 YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 555554 48999999999999988887666678899999 88877776654 789999999998774333
Q ss_pred C--CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE----ECC
Q 004410 469 I--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT----SAD 542 (755)
Q Consensus 469 ~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~----s~D 542 (755)
. ......++++|+++.|+++.. .|.+||+.++++..... .........+++++|.++.++++. ..+
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~ 292 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS------BCCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee------ecCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence 3 346899999999999988765 89999999887532110 111245788999999666666666 578
Q ss_pred CcEEEEECC
Q 004410 543 SLVRVLCGE 551 (755)
Q Consensus 543 g~I~iwd~~ 551 (755)
+.|.+||..
T Consensus 293 ~~V~v~d~~ 301 (328)
T 3dsm_A 293 GIVYRYSPQ 301 (328)
T ss_dssp EEEEEECTT
T ss_pred CEEEEECCC
Confidence 899999976
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-11 Score=122.73 Aligned_cols=236 Identities=8% Similarity=-0.044 Sum_probs=163.6
Q ss_pred cCcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 237 RHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 237 ~~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
....++++|+|++++ +...++.|.+|+......... ...+...+.+|+++++|+++++.. ++.|.+|+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 344589999999777 547789999998654322111 112334678899999999777766 88999998754
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
.... .+ .......+.+++
T Consensus 97 ~~~~-~~-------------------------------------------------------------~~~~~~~p~~i~ 114 (270)
T 1rwi_B 97 NNQT-VL-------------------------------------------------------------PFDGLNYPEGLA 114 (270)
T ss_dssp SCCE-EC-------------------------------------------------------------CCCSCSSEEEEE
T ss_pred ceEe-ee-------------------------------------------------------------ecCCcCCCcceE
Confidence 3210 00 001224578899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCcc
Q 004410 396 WSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREI 472 (755)
Q Consensus 396 ~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~~ 472 (755)
+.+++ .+++...++.|.+|+..+....... .....+.+|+++| +++++++...++.|.+||.......... .....
T Consensus 115 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (270)
T 1rwi_B 115 VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 193 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCC
Confidence 99988 5555566789999987665443222 2335678999999 8888888777899999999887665432 22367
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+..++++++|..+++...++.|.+||..+...... .......+.++++.| ++.++++...++.|++++...
T Consensus 194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--------CCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCG
T ss_pred ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--------ccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCC
Confidence 89999999997666666788999999976543220 111235689999999 778888888899999998765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=144.66 Aligned_cols=242 Identities=10% Similarity=-0.010 Sum_probs=158.1
Q ss_pred cCcceeecCCCCeeE-----EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc----
Q 004410 237 RHGSATLKPGDHELT-----LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT---- 307 (755)
Q Consensus 237 ~~~~~~~spdg~~la-----sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~---- 307 (755)
.+..++|||||++|| .|+.+..|+||++.++..... ..+.... ...++|+|||+.|+.++.|..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCT--TCCCEECTTSSEEEEEECCCCTTSC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCccc--ccceEEecCCCEEEEEEecCCCCCc
Confidence 345689999999999 445567899999887653201 0111111 157899999999999988776
Q ss_pred ---------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 308 ---------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|++.++....
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~---------------------------------------------------------- 216 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKD---------------------------------------------------------- 216 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGC----------------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCchhc----------------------------------------------------------
Confidence 8999887664110
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe---CC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS---ID 450 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg----~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs---~D 450 (755)
..+.....|...+..+.|+|+| +|+.++.++ .|++|+..+++......+...+....+ + ++.+++... .+
T Consensus 217 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~ 294 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPR 294 (695)
T ss_dssp EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-E-TTEEEEEECTTCTT
T ss_pred eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-c-CCcEEEEECCCCCC
Confidence 0011223455678899999999 777766655 688888766666555566666677766 5 555545444 25
Q ss_pred CcEEEEEcCCCeE---EEeccC--CcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCCCeE
Q 004410 451 GKVRIWEVRRCQV---VDYTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 451 g~V~iwdl~~~~~---~~~~~~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
+.|.+||+.++.. ..+..+ ...+..++++ ++.++++...++..+||.+. ++....... ......+.
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~~v~ 366 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ-------LPGVGAAS 366 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC-------CSSSSEEC
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec-------CCCCeEEE
Confidence 7899999987642 333333 4467888888 67788888889987777554 233222111 01134567
Q ss_pred EEEEcCCCCCEEEE-EEC---CCcEEEEECCcce
Q 004410 525 GFQFSPSDPSKVIV-TSA---DSLVRVLCGENVV 554 (755)
Q Consensus 525 ~v~fsp~d~~~l~s-~s~---Dg~I~iwd~~~~~ 554 (755)
.+.++| ++..++. .+. .+.|++||..+..
T Consensus 367 ~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 367 NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788888 5655553 332 4689999987644
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-10 Score=123.56 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=185.2
Q ss_pred eeecCCCCeeEEeeC-----CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CC
Q 004410 241 ATLKPGDHELTLGQR-----MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED 305 (755)
Q Consensus 241 ~~~spdg~~lasgs~-----dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~D 305 (755)
....|+++.++.... ++.|.+.|..+... ..++..-..+ . ++++|||++|+++. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 556799998887755 67999999765432 2233333334 3 99999999887775 36
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|.+||..+.+.+..+....... .
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r-------------------------------------------------------~ 133 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------F 133 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------C
T ss_pred CEEEEEECCCCeEEEEEECCCccc-------------------------------------------------------c
Confidence 789999999988766554321000 0
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-C
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-C 461 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-~ 461 (755)
........++++||| +|+.+.. ++.|.++|+.+++.+..+.-.+. ..+.|...+.|++.+.||++.+.++.. +
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 001123358899999 6666653 68999999999999998864442 223354667888999999999999976 5
Q ss_pred eEEEec-cC----Ccce-EEEEEc-cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc----ccCCCCCeEEEEEcC
Q 004410 462 QVVDYT-DI----REIV-SAVCYC-PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK----KKLPGKRITGFQFSP 530 (755)
Q Consensus 462 ~~~~~~-~~----~~~V-~~v~~s-pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~----~~~~~~~I~~v~fsp 530 (755)
++.... .. ...+ ....|. ++|++++ .+.+|.|+++|+.+........+.+... .......+..++++|
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 543211 11 1122 124554 6776555 5668999999998765332222211000 000112233467788
Q ss_pred CCCCEEEEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEE-eCCCcEEEEEcCCCC
Q 004410 531 SDPSKVIVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~d~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
+++.+++... .+.|.++|..+......... ...+..++|++|++ +|+++ ..++.|.++|..+++
T Consensus 290 -~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 290 -ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp -TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 6666666532 25799999988665554432 23678999999997 66665 458999999999887
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.4e-10 Score=114.34 Aligned_cols=235 Identities=7% Similarity=0.012 Sum_probs=167.9
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
+...+.+|+++++|+++++...++.|.+|+.. +... .+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~--------------------------------------- 51 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYP--------------------------------------- 51 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEE---------------------------------------
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-Eec---------------------------------------
Confidence 45679999999999988877778899999876 4311 110
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEee
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNP 438 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp 438 (755)
+..+...+.++++.+++ .+++...++.|..||.. ++. ..+. ....+.++++.|
T Consensus 52 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~ 108 (299)
T 2z2n_A 52 ---------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP 108 (299)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT
T ss_pred ---------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC
Confidence 01133568889999998 44444457889999986 333 2332 456799999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 439 VDDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 439 ~d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
+++++++...++.|.+||. +++.... ......+..+++.++|...++...++.|..||. +++.... ..
T Consensus 109 -~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~---~~---- 178 (299)
T 2z2n_A 109 -NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF---KI---- 178 (299)
T ss_dssp -TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE---EC----
T ss_pred -CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe---eC----
Confidence 8888888777899999999 5555433 223456899999999987777667789999999 6654321 11
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
......+.++++.+ ++.++++...++.|.+|+. +..... .........+..++++++|+++++...++.|.+||.
T Consensus 179 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 179 PTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12345688999999 6776666667889999998 432221 111234467889999999997777767899999998
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-10 Score=120.15 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=154.8
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeeccc-ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeec
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
.+++|++++.++.|.+||..++.... ++..|. ..+.++.++|+|++|++ .++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w-------~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW-------EYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE-------EEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE-------EeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC
Confidence 46788999999999999976554322 233343 46788999999999983 4678999998 6765544321
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
++...+.++.+.++| .++
T Consensus 74 -------------------------------------------------------------~~~~~~~~~~~~~dG~~lv 92 (276)
T 3no2_A 74 -------------------------------------------------------------PAGCEMQTARILPDGNALV 92 (276)
T ss_dssp -------------------------------------------------------------CTTCEEEEEEECTTSCEEE
T ss_pred -------------------------------------------------------------CCCccccccEECCCCCEEE
Confidence 112346778899999 667
Q ss_pred EEeC-CCcEEEEeCCCCeEEEEEecC-------CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEE
Q 004410 404 SSSA-DKTVRLWQVGIDRCLRVFSHN-------NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA 475 (755)
Q Consensus 404 s~s~-Dg~V~iWdl~s~~~~~~~~h~-------~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~ 475 (755)
+.+. ++.|..+|. .++.+..+... .....+.+.+ +++++++...++.|..||.. ++.+........+.+
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~ 169 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS 169 (276)
T ss_dssp EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE
T ss_pred EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc
Confidence 6666 777888886 67777666411 2344567788 99999999999999999998 777744444456777
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
+...++|+.++++..++.|..+|..+++.+.+... ..........+..++..+ ++..+++..
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA--NDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG--GGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC--CCCCCccccccccceEcC-CCCEEEEec
Confidence 88899999999988888999999998988765431 000011223467788887 666666543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-10 Score=116.74 Aligned_cols=242 Identities=8% Similarity=0.081 Sum_probs=158.5
Q ss_pred cCcceeecCCCCeeEE-------eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCCCcE
Q 004410 237 RHGSATLKPGDHELTL-------GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGEDGTV 308 (755)
Q Consensus 237 ~~~~~~~spdg~~las-------gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~Dg~I 308 (755)
...+++|+++|.++++ +..++.|.+|+....... .+.. ....++...+.+++++++ |+++++... +.|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l 94 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT--VICK-PEVNGYGGIPAGCQCDRDANQLFVADMR-LGL 94 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE--EEEC-CEETTEECCEEEEEECSSSSEEEEEETT-TEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE--EEEe-cccCCCCCCCceEEEecCCCcEEEEECC-CCE
Confidence 3456899999988887 677899999986544321 1100 011235577999999999 776665543 468
Q ss_pred EEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 309 RVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 309 ~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
.+|+.. ++.... .... ...+
T Consensus 95 ~~~d~~-g~~~~~~~~~~----------------------------------------------------------~~~~ 115 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDS----------------------------------------------------------EGRR 115 (314)
T ss_dssp EEEETT-SCEEECCSBCT----------------------------------------------------------TSCB
T ss_pred EEEeCC-CCEEEEEeccC----------------------------------------------------------CCcc
Confidence 889876 542211 0000 0001
Q ss_pred CCCEEEEEEcCCC-eEEEEeCC---------------CcEEEEeCCCCeEEEEEecCCcEEEEEEe----eCCCCEE-EE
Q 004410 388 SSEVLDLSWSKNG-FLLSSSAD---------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFN----PVDDNYF-IS 446 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~D---------------g~V~iWdl~s~~~~~~~~h~~~V~~i~fs----p~d~~~l-~s 446 (755)
...+.++++.+++ .+++...+ +.|..||.. ++......+......++++ | +++.+ ++
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~ 193 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG-RPYQLIVA 193 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS-CEEEEEEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC-CCCEEEEE
Confidence 2346788999988 44444333 567778776 6655555555667899999 8 77655 44
Q ss_pred EeCCCcEEEEEcC-CCeEE------EeccCC-cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 447 GSIDGKVRIWEVR-RCQVV------DYTDIR-EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 447 gs~Dg~V~iwdl~-~~~~~------~~~~~~-~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
...++.|.+||+. +++.. ....+. ..+..++++++|+++++...++.|.+||..+++..... ..
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~--------~~ 265 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI--------RC 265 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE--------EC
T ss_pred ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE--------eC
Confidence 4568899999986 44421 222222 56889999999988887778899999999866554322 12
Q ss_pred CCCCeEEEEEcCCCCCEEEE-EECCCcEEEEECCc
Q 004410 519 PGKRITGFQFSPSDPSKVIV-TSADSLVRVLCGEN 552 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s-~s~Dg~I~iwd~~~ 552 (755)
+...+.+++|+| ++..|++ ...++.|..|+...
T Consensus 266 ~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 336789999998 7775554 45568898888654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-10 Score=120.49 Aligned_cols=283 Identities=11% Similarity=0.045 Sum_probs=184.4
Q ss_pred CCCCeeEEeeC-C----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEE
Q 004410 245 PGDHELTLGQR-M----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVR 309 (755)
Q Consensus 245 pdg~~lasgs~-d----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~ 309 (755)
|+++.+++... + +.|.+.|..+... + .++..-..+ .++++|||++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-v------~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-L------GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE-E------EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE-E------EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 56665555443 2 6999999765432 2 223322334 799999999888875 367899
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
++|..+++.+..+....... + ....
T Consensus 153 viD~~t~~vv~~I~v~g~~r------------------------------------------------------~-~~g~ 177 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPR------------------------------------------------------F-LVGT 177 (426)
T ss_dssp EECTTTCCEEEEEEETTCCC------------------------------------------------------C-CBSC
T ss_pred EEECCCCcEEEEEECCCccc------------------------------------------------------c-ccCC
Confidence 99999988766654321000 0 0011
Q ss_pred CEEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
....+.++|++ +|+.+.. ++.|.+.|+.+++.+..+.-... ....|.....+++.+.||++.+.++.++++...
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 12357899999 7777664 57899999999999988864432 344453457778888899999889866655421
Q ss_pred ----ccC-Ccc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-C---CCCCeEEEEEcCCCCCEE
Q 004410 467 ----TDI-REI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-L---PGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 467 ----~~~-~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-~---~~~~I~~v~fsp~d~~~l 536 (755)
... ... ...+.|.+++..++..+..+.+.+.|+.+........+.+..... . .......++++| ++..+
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rl 333 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRI 333 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEE
Confidence 111 111 124578999999888888999999999766543222111110000 0 001122368899 66666
Q ss_pred EEEEC----------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 537 IVTSA----------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++... .+.|.++|..+.......... .....+.|+|||+ +++++. .++.|.++|+.+.+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 55532 357999999886555444222 2477899999999 888888 59999999999887
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-08 Score=105.51 Aligned_cols=236 Identities=7% Similarity=0.006 Sum_probs=166.6
Q ss_pred ccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
....+.+|+++++|+++++...++.|.+|+.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 34578899999999988888778899999876 4321 010
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-e-cCCcEEEEEEeeC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-S-HNNYVTSVAFNPV 439 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~-h~~~V~~i~fsp~ 439 (755)
+..+...+..+++.+++ .+++...++.|..||.. ++..... . ....+.++++.+
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~- 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL- 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-
Confidence 11223567889999988 44444457889999988 5553222 1 346799999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
+++++++...++.|..+|.. ++...+ ......+..+++.++|+..++...++.|..||. +++... ... .
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~----~ 184 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL----P 184 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC----S
T ss_pred CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC----C
Confidence 88888887778899999988 655533 223457899999999996666556788999998 554432 111 1
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.....+.++++.+ ++.++++....+.|.+|+.......+.. ......+.+++++++|+++++...++.|..|+.
T Consensus 185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEEC--CCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2345688999998 7777666666778999997332222211 234466889999999997777767789999987
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=113.13 Aligned_cols=233 Identities=9% Similarity=0.052 Sum_probs=152.9
Q ss_pred ecccccEEEEEEecCCC-EEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeee
Q 004410 281 LAHEGSILTMKFSLDGQ-YLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR 359 (755)
Q Consensus 281 ~~H~~~V~~l~fspdg~-~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (755)
..+........|+|+|+ ++++...++.|..|+. +++.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~----------------------------------------- 78 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV----------------------------------------- 78 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-----------------------------------------
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-----------------------------------------
Confidence 33445667899999998 6777778889999986 3321
Q ss_pred ecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe-CCCcEEEEeCCCCeEEEEEe-----cCCcEEE
Q 004410 360 KSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-ADKTVRLWQVGIDRCLRVFS-----HNNYVTS 433 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s-~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~ 433 (755)
..+..+...+..+++.++|.|+++. .++.|.+|+.. ++...... ....+..
T Consensus 79 ----------------------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~ 135 (305)
T 3dr2_A 79 ----------------------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPND 135 (305)
T ss_dssp ----------------------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCC
T ss_pred ----------------------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCC
Confidence 1112234567889999999555555 45789999986 55433322 1245678
Q ss_pred EEEeeCCCCEEEE----EeC-------------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-----
Q 004410 434 VAFNPVDDNYFIS----GSI-------------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT----- 491 (755)
Q Consensus 434 i~fsp~d~~~l~s----gs~-------------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d----- 491 (755)
+++.| +++++++ |.. .+.|..||..+++...+. .......++|+||++.|+++...
T Consensus 136 i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 136 LIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp EEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---C
T ss_pred EEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCC
Confidence 99999 8998886 332 256888888777655444 44567889999999988887765
Q ss_pred -CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEE
Q 004410 492 -GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF 570 (755)
Q Consensus 492 -g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~ 570 (755)
+.|.+|++..+.+ ........ .......++++.+ +++ |.++..+ .|.+|+..... .... . ....+..
T Consensus 214 ~~~i~~~~~~~~~l-~~~~~~~~----~~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~-~~~~--~-~~~~~~~ 281 (305)
T 3dr2_A 214 SVEITAFAWRDGAL-HDRRHFAS----VPDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQL-LGHI--P-TPGTASN 281 (305)
T ss_dssp CCEEEEEEEETTEE-EEEEEEEC----CSSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCE-EEEE--E-CSSCCCE
T ss_pred CCEEEEEEecCCCc-cCCeEEEE----CCCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCE-EEEE--E-CCCceeE
Confidence 6899999987652 21111111 1223456788888 666 4444444 49999874322 2121 1 2235888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEE
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++|+++++.|+.++.+ .|+.++
T Consensus 282 ~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EEECTTSCEEEEEETT-EEEEEE
T ss_pred EEEeCCCCEEEEEcCC-eEEEEE
Confidence 9999999988888876 444444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-09 Score=117.01 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=161.6
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 35789999999998888888899999998776532111
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEE----e-cCCcEEEEEE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVF----S-HNNYVTSVAF 436 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~----~-h~~~V~~i~f 436 (755)
. ...... ++|++++ .|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------P-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------E-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------c-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 011123 8899998 777777765 7999998766554444 3 4567889999
Q ss_pred eeCCCCEEEEEeCCCcEEEEEcCCCeEEEe----c-cCCcce-E-EEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 437 NPVDDNYFISGSIDGKVRIWEVRRCQVVDY----T-DIREIV-S-AVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 437 sp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~----~-~~~~~V-~-~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
+| ++..|+.+..++.|+.||..++....+ . ...... . .++|+|+ +.++++-..++.|+.|+.........-
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g 305 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG 305 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEe
Confidence 99 555555577788999999987765433 1 111112 2 8999995 555555566788999998754221100
Q ss_pred eEEeccc-----ccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceee-EEEee--e---------ccCCceEE
Q 004410 509 QICLQGK-----KKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGK-FKASA--F---------RVAGSQMF 570 (755)
Q Consensus 509 ~~~~~~~-----~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~-~~~~~--~---------~~~~~v~~ 570 (755)
.....+. .........+++++| ++.++++-. .++.|+.|+..+.... +.... . ..-.....
T Consensus 306 ~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 306 SATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp CTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred CCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceE
Confidence 0000000 001124578999999 777777777 8899999996544322 22110 0 00245789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEc
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
++++++|.++++-..++.|+.+++
T Consensus 385 iavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 385 ICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999988888888889988875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-08 Score=105.57 Aligned_cols=230 Identities=10% Similarity=0.040 Sum_probs=151.2
Q ss_pred cccEEEEEEecC-CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 284 EGSILTMKFSLD-GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 284 ~~~V~~l~fspd-g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
..-..+..|+|+ +.++++...++.|..||..++... .
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~----------------------------------------- 49 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R----------------------------------------- 49 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-----------------------------------------
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-----------------------------------------
Confidence 344567889995 556777777899999998765421 0
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEe
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFN 437 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h-----~~~V~~i~fs 437 (755)
..+...+.++++++++.|+.+. ++.|.+||..+++....... ...+..++++
T Consensus 50 ----------------------~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d 106 (297)
T 3g4e_A 50 ----------------------VTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD 106 (297)
T ss_dssp ----------------------EECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC
T ss_pred ----------------------EeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC
Confidence 0123468889999999555555 57899999998876544432 2458899999
Q ss_pred eCCCCEEEEEeCC---------CcEEEEEcC-CCeEEEeccCCcceEEEEEccCCCeEEE-EeCCCcEEEEEC--CCCeE
Q 004410 438 PVDDNYFISGSID---------GKVRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDI--KDNQL 504 (755)
Q Consensus 438 p~d~~~l~sgs~D---------g~V~iwdl~-~~~~~~~~~~~~~V~~v~~spdg~~la~-gs~dg~I~iwD~--~~~~~ 504 (755)
| +++++++.... ..-.||.+. .++.............++|+||++.|++ .+.++.|.+||+ .++.+
T Consensus 107 ~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 107 P-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp T-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred C-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 9 88877755322 223445443 2344333334455789999999997755 455788999987 45554
Q ss_pred eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEE
Q 004410 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSP 583 (755)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sg 583 (755)
.....+ .. .........++++.+ ++++.++....+.|.+||..+....... ..+...+++++|. |+++.|+.+
T Consensus 186 ~~~~~~-~~--~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i--~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 186 SNRRSV-YK--LEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTV--KLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEEE-EE--CCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEE--ECSSSBEEEEEEESGGGCEEEEE
T ss_pred cCcEEE-EE--CCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEE--ECCCCCceEEEEeCCCCCEEEEE
Confidence 211111 00 111224678899999 7787777778889999998754433332 2344678999998 898877665
Q ss_pred eC
Q 004410 584 SE 585 (755)
Q Consensus 584 s~ 585 (755)
+.
T Consensus 260 ~~ 261 (297)
T 3g4e_A 260 CA 261 (297)
T ss_dssp EB
T ss_pred cC
Confidence 54
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-10 Score=120.59 Aligned_cols=176 Identities=9% Similarity=0.029 Sum_probs=130.1
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCccccc----ccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELS----SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~----~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.+..+++++...++++|+.++ ++||+.....+... .+.. .....+.+ |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 466799999999999999884 66698653221000 0111 12335667 999999 99999999 889999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+.+..... ....|...|.
T Consensus 113 v~sl~~~~--------------------------------------------------------------~~~~~~~~v~ 130 (388)
T 1xip_A 113 LEELSEFR--------------------------------------------------------------TVTSFEKPVF 130 (388)
T ss_dssp SSSTTCEE--------------------------------------------------------------EEEECSSCEE
T ss_pred chhhhccC--------------------------------------------------------------ccceeeccee
Confidence 87654211 1122444566
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--E-Ee---
Q 004410 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--V-DY--- 466 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~-~~--- 466 (755)
++.+.+. .+++++.||.|.+||+..++... +...|+|++|+| ++ ++.|..||++++|+....++ . .+
T Consensus 131 ~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 131 QLKNVNN-TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp EEEECSS-EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred eEEecCC-CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 6666654 38889999999999999887754 456899999999 77 78899999999999988774 3 22
Q ss_pred ---c---cCCcceEEEEEccCCCeEEE
Q 004410 467 ---T---DIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 467 ---~---~~~~~V~~v~~spdg~~la~ 487 (755)
. ++...|.+|+|.+++.++++
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 36788999999999888876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-08 Score=105.95 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=121.9
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcEEEEEEeeCCCCEEEEEeC------CCcEEEEE
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSH-----NNYVTSVAFNPVDDNYFISGSI------DGKVRIWE 457 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h-----~~~V~~i~fsp~d~~~l~sgs~------Dg~V~iwd 457 (755)
..+.+++|.+++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 45888999999955555544 499999988876544332 23689999999 8887766542 24566666
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECC--CC-eEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIK--DN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~--~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
+++...+.........++|+|||+.|+++ +.++.|.+||+. ++ .+.....+. . .........++++.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~--~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-D--STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-E--CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-E--CCCCCCCCCeeEECC-CC
Confidence 56555443333457889999999987665 456889999986 55 321110010 0 111234567899998 77
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEEeCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSPSED 586 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sgs~D 586 (755)
.+.++...++.|.+|+... ...... ......+++++|+ ++++.|+.++..
T Consensus 242 ~lwva~~~~~~v~~~d~~g-~~~~~i--~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTDG-NHIARY--EVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECTTC-CEEEEE--ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECCCC-CEEEEE--ECCCCCcEEEEEecCCCCEEEEEecC
Confidence 7777776778999999743 222222 2334568999998 888877655443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=122.88 Aligned_cols=189 Identities=10% Similarity=0.021 Sum_probs=132.6
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.+..+++++...+|++|+.++ ++||++.+...... .....
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~~~~~------------------------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--SDSTP------------------------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--SSSCC-------------------------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--ccccc-------------------------------------
Confidence 588999999999999999885 66699765431000 00000
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~ 443 (755)
-.+... ..+.. |+.|+| ++ .|+++ .++.|++||+.+....... .|...|.++.+.+ . .
T Consensus 79 ------------~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 ------------LTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp ------------CCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred ------------ccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 001111 23556 999999 66 77777 8899999998766544433 4777788887765 2 3
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc---CCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK---LPG 520 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~---~~~ 520 (755)
+++++.||.|.+||+.++.... +...|++++|+|+| +++|..||++++|+..+........+....... .+.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8889999999999999887754 45689999999999 788999999999999887752111111111111 256
Q ss_pred CCeEEEEEcCCCCCEEEEEE
Q 004410 521 KRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s 540 (755)
..|.+++|.+ +..++++-.
T Consensus 214 ~~V~sI~wl~-~~~flv~y~ 232 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAVFG 232 (388)
T ss_dssp SEEEEEEESS-SSEEEEEEE
T ss_pred eeEEEEEEec-CCeEEEEEc
Confidence 8899999999 777776643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-09 Score=127.51 Aligned_cols=240 Identities=11% Similarity=0.005 Sum_probs=149.5
Q ss_pred CcceeecCCCCeeEEeeCC-----CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCc-----
Q 004410 238 HGSATLKPGDHELTLGQRM-----RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGT----- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~d-----g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~----- 307 (755)
+..++|||||++||.+..+ ..|+|||+.++... . ...+...+..++|+|| +.|+.++.|+.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-~-------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-A-------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-E-------EEEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-C-------ccCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 4558999999999887553 46999998765431 1 1112222357899999 99998887654
Q ss_pred ---------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 308 ---------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 308 ---------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
|++|++.++....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~---------------------------------------------------------- 257 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSAD---------------------------------------------------------- 257 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGC----------------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCCchhC----------------------------------------------------------
Confidence 5666654432100
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCC--e-EEEEEecCCcEEEEEEeeCCCCEEEEEeC
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-----TVRLWQVGID--R-CLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg-----~V~iWdl~s~--~-~~~~~~h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
..+.....|...+..+.|+||| +|+..+.++ .|++||+.++ + ......+...+.... .| +++.|+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG-VGDQLWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE-ETTEEEEEEC
T ss_pred EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec-cCCEEEEEEC
Confidence 0011112334457889999999 777666443 8999999877 4 334444555555553 47 7787777765
Q ss_pred C----CcEEEEEcCCC--eEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECC-CCeEeeeeeEEecccccCCCC
Q 004410 450 D----GKVRIWEVRRC--QVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIK-DNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 450 D----g~V~iwdl~~~--~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~-~~~~~~~~~~~~~~~~~~~~~ 521 (755)
+ +.|.+||+.++ ....+. .+...+..+++. ++.++++...++..+||.+. ++.....+. .....
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~~~ 407 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-------LPGIG 407 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB-------CSSSC
T ss_pred CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc-------CCCCe
Confidence 3 45999999874 344333 334456677777 56677888888887766543 233222111 11245
Q ss_pred CeEEEEEcCCCCCEEEEEEC---CCcEEEEECCcce
Q 004410 522 RITGFQFSPSDPSKVIVTSA---DSLVRVLCGENVV 554 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~---Dg~I~iwd~~~~~ 554 (755)
.+..+.++|++..++++.+. .+.|++||..+..
T Consensus 408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 68889999943334444432 4789999987644
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.3e-10 Score=130.19 Aligned_cols=240 Identities=14% Similarity=0.118 Sum_probs=153.5
Q ss_pred cccccEEEEEEecCCCEEEEE-----cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 282 AHEGSILTMKFSLDGQYLASG-----GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSg-----s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
+|...|..++|||||++||-+ +....|+|||+.+++.+...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------------------- 171 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------------------------- 171 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 456678999999999999843 33457999999988643210
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC-------------cEEEEeCCCCeE-
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK-------------TVRLWQVGIDRC- 421 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg-------------~V~iWdl~s~~~- 421 (755)
+.+. ....++|+ |+ .|+.++.+. .|++|++.+.+.
T Consensus 172 ---------------------------~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 172 ---------------------------LKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp ---------------------------EEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred ---------------------------cCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence 0000 01246788 88 777777664 399999987653
Q ss_pred -EEEEe----cCCcEEEEEEeeCCCCEEEEEeC----CCcEEEEEcCCC--eEEEeccCCcceEEEEEccCCCeEEEEeC
Q 004410 422 -LRVFS----HNNYVTSVAFNPVDDNYFISGSI----DGKVRIWEVRRC--QVVDYTDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 422 -~~~~~----h~~~V~~i~fsp~d~~~l~sgs~----Dg~V~iwdl~~~--~~~~~~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
...+. +...+..+.|+| ++++|+.... +..|+++|+.++ +...+..+....... ++++|..|+..+.
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred ceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 33332 244678999999 8887755432 258999999776 455555555555555 6777777766554
Q ss_pred C----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CC--cEEEEECCcceeeEEEeeec
Q 004410 491 T----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DS--LVRVLCGENVVGKFKASAFR 563 (755)
Q Consensus 491 d----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~ 563 (755)
. +.|..+|+.++.... ... +. .+...+. .|++ ++..|+.... ++ .|++|+....... .....
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~-~~~-l~----~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l~~p 368 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAH-WRD-LI----PERQQVL--TVHS-GSGYLFAEYMVDATARVEQFDYEGKRVR--EVALP 368 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGG-CEE-EE----CCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEECTTSCEEE--EECCS
T ss_pred CCCCCCEEEEEeCCCCCccc-cEE-Ee----cCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEEECCCCeeE--EeecC
Confidence 2 579999998764310 000 11 1222333 7888 5566655544 44 6788887643222 21133
Q ss_pred cCCceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCC
Q 004410 564 VAGSQMFATFTSDGKHVVSPSED----SNIYIWNYSNQD 598 (755)
Q Consensus 564 ~~~~v~~l~fspdg~~L~sgs~D----g~I~iWd~~~~~ 598 (755)
..+.+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 45567778888888877665544 789999998776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-08 Score=107.52 Aligned_cols=236 Identities=10% Similarity=-0.039 Sum_probs=151.4
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--C
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--D 305 (755)
.++++|||++|+.+. .++.|.+||..+... ....... .... +...-..++|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~-~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFD-VGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccc-cCCCccceEECCCCCEEEEEecCCC
Confidence 589999999988875 367899999764321 1111110 0000 0123457899999999998874 4
Q ss_pred CcEEEEEccCCeeeee-eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 306 GTVRVWKVIEHERLDG-FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+.|.++| .+++.+.. +...
T Consensus 148 ~~v~viD-~t~~~~~~~i~~~----------------------------------------------------------- 167 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQLLSSP----------------------------------------------------------- 167 (373)
T ss_pred CeEEEEE-CCCCEEeEEcCCC-----------------------------------------------------------
Confidence 7899999 88865433 2210
Q ss_pred cCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe------cCCc-EEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 385 QGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS------HNNY-VTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~------h~~~-V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
. ++.+.+++ .+++.+.||.+.++|. +++...... .... .....+.+ ++..++..+..+.|.+
T Consensus 168 ----~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 168 ----T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQ 238 (373)
T ss_pred ----c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEE
Confidence 0 12233443 5566677888889998 776663321 1111 23345677 4444444447889999
Q ss_pred EEcCCCeE--EE-ecc----------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEe
Q 004410 456 WEVRRCQV--VD-YTD----------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 456 wdl~~~~~--~~-~~~----------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
.|+..... +. +.. .......+.++|+++.++++.. .+.|.++|+.+++.+..+..
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-- 316 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-- 316 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--
Confidence 99976532 21 110 1122445789999998888654 35799999999988765432
Q ss_pred cccccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceee
Q 004410 513 QGKKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGK 556 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~ 556 (755)
.....+++|+| |++ +++++. .++.|.++|..+....
T Consensus 317 -------g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 317 -------GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred -------CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 23578999999 676 777776 5899999998875544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.6e-09 Score=113.81 Aligned_cols=244 Identities=14% Similarity=0.032 Sum_probs=158.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC--cEEEEEcc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVI 314 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~ 314 (755)
....++++|+++++++...++.|++|+...... ..+ ... ..... ++|+|++++|+++..++ .|.+|+..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~-----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTV-----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEE-----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEe-----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 344589999999888888889999999765332 111 111 12223 89999999999988866 67777765
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLD 393 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~ 393 (755)
.+.....+ ..+.. +...+.+
T Consensus 203 ~~~~~~~~-----------------------------------------------------------g~~~~~~~~~p~~ 223 (409)
T 3hrp_A 203 SGWAPTRI-----------------------------------------------------------GQLGSTFSGKIGA 223 (409)
T ss_dssp GTTCEEEE-----------------------------------------------------------EECCTTSCSCCCB
T ss_pred CCceeEEe-----------------------------------------------------------eeccchhcCCcEE
Confidence 44221110 00001 2344567
Q ss_pred EEEcC-CCeEEEEeCCCcEEEEeCCCCeEEEE----Ee-cCCcE-E-EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 394 LSWSK-NGFLLSSSADKTVRLWQVGIDRCLRV----FS-HNNYV-T-SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 394 l~~s~-~~~L~s~s~Dg~V~iWdl~s~~~~~~----~~-h~~~V-~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
++++| ++.|+.+..++.|+.||..++..... .. +...- . .++|+|.++.++++-..++.|+.|+.... ...
T Consensus 224 iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~ 302 (409)
T 3hrp_A 224 VALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEW 302 (409)
T ss_dssp CEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE
T ss_pred EEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEE
Confidence 89999 56666677788999999987764333 11 11222 2 99999945666777777889999998754 333
Q ss_pred eccC---------------CcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeE-Eeccc-----ccCCCCCe
Q 004410 466 YTDI---------------REIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQI-CLQGK-----KKLPGKRI 523 (755)
Q Consensus 466 ~~~~---------------~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~-~~~~~-----~~~~~~~I 523 (755)
+.+. -.....++++|+|+++++-. .++.|+.||+.++.+....-. ...+. ........
T Consensus 303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P 382 (409)
T 3hrp_A 303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYP 382 (409)
T ss_dssp EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSE
T ss_pred EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCc
Confidence 2222 13478999999999777766 788999999887765321110 00000 00112468
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
.++++.| ++.++++-..++.|+.+++
T Consensus 383 ~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 383 YDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred eEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 8999999 6777777777888887753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-08 Score=104.89 Aligned_cols=223 Identities=14% Similarity=0.148 Sum_probs=145.3
Q ss_pred ceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
+..|+|++. ++++....++|..|+....... ...+...+.+++++++|+++++. ++.|.+||..+++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------RVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------EEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------EEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence 378999655 5666677899999997654321 11234679999999999966654 56799999877653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
........ ......+.++++.+
T Consensus 86 ~~~~~~~~----------------------------------------------------------~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 86 VVLATVDN----------------------------------------------------------DKKNNRFNDGKVDP 107 (297)
T ss_dssp EEEEECCT----------------------------------------------------------TCSSEEEEEEEECT
T ss_pred EEEEecCC----------------------------------------------------------CCCCCCCCCEEECC
Confidence 21110000 00123467899999
Q ss_pred CCeEEEEeC----------CCcEEEEeCC-CCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEc--CCCeEE
Q 004410 399 NGFLLSSSA----------DKTVRLWQVG-IDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEV--RRCQVV 464 (755)
Q Consensus 399 ~~~L~s~s~----------Dg~V~iWdl~-s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl--~~~~~~ 464 (755)
+|.|+.++. .....||.+. .++......+......++|+| +++.| ++.+.++.|.+|++ .++.+.
T Consensus 108 dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 108 AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCccc
Confidence 994444432 1233455443 244444444556678999999 88755 55566789999997 455432
Q ss_pred ------EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEE
Q 004410 465 ------DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVI 537 (755)
Q Consensus 465 ------~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~ 537 (755)
.+......+..++++++|++.++....+.|.+||..+++++.... .+...+++++|. | +.+.|+
T Consensus 187 ~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------~p~~~~t~~~f~g~-d~~~L~ 257 (297)
T 3g4e_A 187 NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------LPVDKTTSCCFGGK-NYSEMY 257 (297)
T ss_dssp EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------CSSSBEEEEEEESG-GGCEEE
T ss_pred CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------CCCCCceEEEEeCC-CCCEEE
Confidence 222234568899999999877777777889999999887765432 234578999998 6 666665
Q ss_pred EEEC
Q 004410 538 VTSA 541 (755)
Q Consensus 538 s~s~ 541 (755)
+++.
T Consensus 258 vt~~ 261 (297)
T 3g4e_A 258 VTCA 261 (297)
T ss_dssp EEEB
T ss_pred EEcC
Confidence 5543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=114.09 Aligned_cols=279 Identities=14% Similarity=0.063 Sum_probs=172.5
Q ss_pred cCcceeecCCCCeeEEee--CCCeEEEEECCCCcccccccccc-eeeecccccEEEEEEecCCCEEEEEcC-----CCcE
Q 004410 237 RHGSATLKPGDHELTLGQ--RMRRVRVHPVKKQSRELSSLYTG-QEFLAHEGSILTMKFSLDGQYLASGGE-----DGTV 308 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs--~dg~V~Vw~~~~~~~~~~~~~~~-~~l~~H~~~V~~l~fspdg~~LaSgs~-----Dg~I 308 (755)
....++++|+|+++++.. .++.++||.+... . +..+... ....+|-..+..|+++++|+++++-.. ++.|
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCC-C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 445699999999988854 2343555554322 1 2222110 112346678999999999987666543 5789
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||+.+++.+..+..+.. ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~--------------------------------------------------------~~~~~ 119 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPP--------------------------------------------------------ITLSN 119 (343)
T ss_dssp EEEETTTTEEEEEEECCTT--------------------------------------------------------TSCTT
T ss_pred EEEECCCCeEEEEEECChh--------------------------------------------------------hcccc
Confidence 9999988875544432110 01133
Q ss_pred CCEEEEEEcCC-Ce-EEEEe---CCCcEEEEeCCCCeEEEEEe-cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKN-GF-LLSSS---ADKTVRLWQVGIDRCLRVFS-HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~-~~-L~s~s---~Dg~V~iWdl~s~~~~~~~~-h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+.++++.++ +. +++-. .++.|.+||+.+++..+.+. |..... ...+.+ ++..|.+.+.++.++.|.
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~---- 194 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH---- 194 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC----
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee----
Confidence 45678889875 44 44544 67899999999888777663 211110 134555 677777777888876653
Q ss_pred eEEEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECC---CCeEee---eeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIK---DNQLYQ---QNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 462 ~~~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~---~~~~~~---~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
..+..|+|+|+|+.|+++...+ .+..++.. .+.+.. ...+...+ +.....++++.+ ++.
T Consensus 195 ---------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~-~G~ 260 (343)
T 2qe8_A 195 ---------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDK-DHN 260 (343)
T ss_dssp ---------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECT-TCC
T ss_pred ---------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECC-CCC
Confidence 2467899999999999887766 45555432 111000 00000000 112456789999 788
Q ss_pred EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 535 KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
++++...++.|.+||..+........ .........++|.++|+++++.+..+.+.+|+
T Consensus 261 l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 88888889999999983332222211 22345688999999999888887655554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-08 Score=102.18 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=140.9
Q ss_pred ceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 240 SATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 240 ~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
...|+|++. ++++...++.|.+|+...+... .+ .+...|.+++|+|+|+++++. .+ .|.+||..+++.
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT--------VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--------EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--------EE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 378999855 5566667889999997654321 11 124579999999999987765 34 488999876653
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
....... . ......+.++++++
T Consensus 122 ~~~~~~~----------------------------------------------------~------~~~~~~~~~i~~d~ 143 (326)
T 2ghs_A 122 TLHAELE----------------------------------------------------S------DLPGNRSNDGRMHP 143 (326)
T ss_dssp EEEECSS----------------------------------------------------T------TCTTEEEEEEEECT
T ss_pred EEEeeCC----------------------------------------------------C------CCCCCCCCCEEECC
Confidence 2100000 0 00123578899999
Q ss_pred CCeEEEEeC-------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE-EEeCCCcEEEEEcC--CC-e-----
Q 004410 399 NGFLLSSSA-------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVRIWEVR--RC-Q----- 462 (755)
Q Consensus 399 ~~~L~s~s~-------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~-sgs~Dg~V~iwdl~--~~-~----- 462 (755)
+|.++.++. .+.|..++ +++......+......++|+| +++.++ +.+.++.|.+||+. ++ .
T Consensus 144 ~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 144 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 994444432 24555566 565544444445678999999 887664 44567899999986 55 2
Q ss_pred EE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc-CCCCCEEEEEE
Q 004410 463 VV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS-PSDPSKVIVTS 540 (755)
Q Consensus 463 ~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs-p~d~~~l~s~s 540 (755)
.. .+......+..+++.++|.+.++...++.|.+||. +++..... ..+...+++++|. | ++..|++++
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i--------~~~~~~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY--------EVPGKQTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE--------ECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE--------ECCCCCcEEEEEecC-CCCEEEEEe
Confidence 22 22223456788999999987776666788999998 45444322 1234568999998 7 666565554
Q ss_pred C
Q 004410 541 A 541 (755)
Q Consensus 541 ~ 541 (755)
.
T Consensus 291 ~ 291 (326)
T 2ghs_A 291 A 291 (326)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.8e-09 Score=120.58 Aligned_cols=236 Identities=10% Similarity=0.078 Sum_probs=147.0
Q ss_pred CcceeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccE--EEEEEecCCCEEEEEcCCCc---
Q 004410 238 HGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSI--LTMKFSLDGQYLASGGEDGT--- 307 (755)
Q Consensus 238 ~~~~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V--~~l~fspdg~~LaSgs~Dg~--- 307 (755)
+..++|||||++||.+ +....|+|||+.++.... .+...+ ..++|+ ||+.|+.++.+..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~----------~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE----------TPLKDVKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE----------EEEEEEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc----------cccCCceeccEEEe-CCCEEEEEEecCcccc
Confidence 3447899999998853 334679999988654211 122222 568999 9999999887743
Q ss_pred ----------EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceecc
Q 004410 308 ----------VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLL 377 (755)
Q Consensus 308 ----------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (755)
|++|++.++....
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~--------------------------------------------------------- 222 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDD--------------------------------------------------------- 222 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGC---------------------------------------------------------
T ss_pred cccccCCCcEEEEEECCCCcccc---------------------------------------------------------
Confidence 7777765543100
Q ss_pred CccceEecC-CCCCEEEEEEcCCC-eEE-EEeC---CCcEEEEeCCCC--eEEEEEecCCcEEEEEEeeCCCCEEEEEeC
Q 004410 378 EKPLHEFQG-HSSEVLDLSWSKNG-FLL-SSSA---DKTVRLWQVGID--RCLRVFSHNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 378 ~~~~~~~~g-h~~~V~~l~~s~~~-~L~-s~s~---Dg~V~iWdl~s~--~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
..+..... |...+..+.|+|++ +|+ +.+. ...|+++|+.++ +......+....... +++.++.+++....
T Consensus 223 -~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~ 300 (693)
T 3iuj_A 223 -RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNR 300 (693)
T ss_dssp -EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred -eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECC
Confidence 01111223 44557789999999 554 3332 358999999776 344444455555555 55624445555544
Q ss_pred C---CcEEEEEcCCCeE---EEeccCCcceEEEEEccCCCeEEEEeCCC---cEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 450 D---GKVRIWEVRRCQV---VDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 450 D---g~V~iwdl~~~~~---~~~~~~~~~V~~v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
+ +.|.++|+.++.. ..+..+...+. .|+++++.|+....++ .|++||+.++.... +.+ ...
T Consensus 301 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~---l~~-----p~~ 370 (693)
T 3iuj_A 301 DAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE---VAL-----PGL 370 (693)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE---ECC-----SSS
T ss_pred CCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE---eec-----CCC
Confidence 4 5799999987653 34555555554 8999999888776544 68999988654321 111 122
Q ss_pred CCeEEEEEcCCCCCEEEEEECC----CcEEEEECCcce
Q 004410 521 KRITGFQFSPSDPSKVIVTSAD----SLVRVLCGENVV 554 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~D----g~I~iwd~~~~~ 554 (755)
..+..+.++| ++..++....+ +.|..||..+..
T Consensus 371 ~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 371 GSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4566777888 44444444333 789999976543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=107.03 Aligned_cols=225 Identities=11% Similarity=0.048 Sum_probs=146.1
Q ss_pred cceeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 239 GSATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 239 ~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
....|+|+|+ +++++..++.|..|+..... +.+..+...+..++++++|+++++...++.|.+|+.. ++
T Consensus 48 egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~---------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVGRRVLGWREDGTV---------DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEETTSCE---------EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEeCCCCE---------EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 3488999999 66777788999999863221 2234456778999999999977776666789999864 43
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC-CCCCEEEEEE
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG-HSSEVLDLSW 396 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~ 396 (755)
.. .+.. ...+ ....+.++++
T Consensus 118 ~~-~~~~----------------------------------------------------------~~~~~~~~~~~~i~~ 138 (305)
T 3dr2_A 118 AH-LLVG----------------------------------------------------------RYAGKRLNSPNDLIV 138 (305)
T ss_dssp EE-EEEC----------------------------------------------------------EETTEECSCCCCEEE
T ss_pred EE-EEEe----------------------------------------------------------ccCCCccCCCCCEEE
Confidence 21 1100 0000 1123556888
Q ss_pred cCCCeEEE-----EeC-------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC------Cc
Q 004410 397 SKNGFLLS-----SSA-------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------GK 452 (755)
Q Consensus 397 s~~~~L~s-----~s~-------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------g~ 452 (755)
.++|.+.. +.. .+.|..||..+++..... .......++|+| +++.|+.+... +.
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~ 216 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVE 216 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCE
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCE
Confidence 88884443 322 256788887767655444 445678899999 88877776665 78
Q ss_pred EEEEEcCCCeEE----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 453 VRIWEVRRCQVV----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 453 V~iwdl~~~~~~----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
|++|++....+. ...........++++++|+ |.+++.+ .|.+|+.. ++.+..+. .+ ..+..++|
T Consensus 217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~-g~~~~~~~--------~~-~~~~~~~f 284 (305)
T 3dr2_A 217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD-GQLLGHIP--------TP-GTASNCTF 284 (305)
T ss_dssp EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT-SCEEEEEE--------CS-SCCCEEEE
T ss_pred EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC-CCEEEEEE--------CC-CceeEEEE
Confidence 999998765421 1111234456789999998 5555544 59999985 44433221 11 24788999
Q ss_pred cCCCCCEEEEEECCCcEEE
Q 004410 529 SPSDPSKVIVTSADSLVRV 547 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~i 547 (755)
.| +++.|++++.++..++
T Consensus 285 ~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 285 DQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEETTEEEEE
T ss_pred eC-CCCEEEEEcCCeEEEE
Confidence 97 7788888877654443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=109.94 Aligned_cols=254 Identities=12% Similarity=0.036 Sum_probs=157.3
Q ss_pred eeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--CC
Q 004410 241 ATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--DG 306 (755)
Q Consensus 241 ~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--Dg 306 (755)
++++|||++|+++. .++.|.+||..+... ...+... .... ....-..++|+|||++|+.+.. ++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~v~~g~r~~-~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIELPDAPRFL-VGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCC-BSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEECCCccccc-cCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 89999999887765 367899999876432 1111100 0000 0112346899999999888864 68
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|.|+|+.+++.+.++.....
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~----------------------------------------------------------- 181 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC----------------------------------------------------------- 181 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE-----------------------------------------------------------
T ss_pred eEEEEECCCCcEEEEEECCCc-----------------------------------------------------------
Confidence 999999999987766542110
Q ss_pred CCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CeEEEEEe-----cCCcEE-EEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 387 HSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGI-DRCLRVFS-----HNNYVT-SVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 387 h~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s-~~~~~~~~-----h~~~V~-~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
...+ |.+ .+++.+.||.+.+.++.+ ++...... ....+. ...|.+.++++++ .+.+|.|.+.|
T Consensus 182 ------~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 182 ------YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp ------EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred ------ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence 0111 222 455666677776666654 44322111 111221 2356532665544 56689999999
Q ss_pred cCCCeE--EE-ec--c--------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 458 VRRCQV--VD-YT--D--------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 458 l~~~~~--~~-~~--~--------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+.+... .. +. . .......++++++++.+++... .+.|.++|+.+++.+..+...
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--- 330 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--- 330 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---
Confidence 976642 21 11 0 1223445788999999988753 246999999999988765542
Q ss_pred cccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 515 KKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
..+..++++| +++ +|+++. .++.|.++|..+..........+ .-..+.+++|
T Consensus 331 ------~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~---~p~~l~~s~d 384 (386)
T 3sjl_D 331 ------HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG---HGPQVITTAD 384 (386)
T ss_dssp ------EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC---SSCCEEEECC
T ss_pred ------CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC---CCceeEECCc
Confidence 3678999999 554 666654 58999999998876555443333 3345566665
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-07 Score=99.13 Aligned_cols=191 Identities=11% Similarity=0.158 Sum_probs=128.2
Q ss_pred EEEEEcCCCeEEEEeCC------CcEEEEeCCCCeEEEEEecC----CcEEEEEEeeCCCCEEEEEe-------------
Q 004410 392 LDLSWSKNGFLLSSSAD------KTVRLWQVGIDRCLRVFSHN----NYVTSVAFNPVDDNYFISGS------------- 448 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~D------g~V~iWdl~s~~~~~~~~h~----~~V~~i~fsp~d~~~l~sgs------------- 448 (755)
..+...|+|.++++..+ +.|.++|..+.+.+..+... ..-..+.|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45677888844444443 78999999999999988522 2345688899 888888874
Q ss_pred ------CCCcEEEEEcCCCeEEEeccCC---cceEEEEE--ccCCCeEEEEe------CCCcEEEEECCCCeEeeeeeEE
Q 004410 449 ------IDGKVRIWEVRRCQVVDYTDIR---EIVSAVCY--CPDGKGGIVGT------MTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 449 ------~Dg~V~iwdl~~~~~~~~~~~~---~~V~~v~~--spdg~~la~gs------~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.+.+|.+||+.+++++...... .....+.| +|+++++.+++ .+++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 4789999999998877544443 34556656 99999998877 4668888776666543333222
Q ss_pred eccccc---C---------CCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcc-eeeEEEee-ec-c-----------
Q 004410 512 LQGKKK---L---------PGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENV-VGKFKASA-FR-V----------- 564 (755)
Q Consensus 512 ~~~~~~---~---------~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~-~~~~~~~~-~~-~----------- 564 (755)
+..... . .......+.++| |+++|.++.. .+.|.+||+.+. ..+..... .+ .
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 222110 0 034678899999 7777776665 789999998532 22222211 11 0
Q ss_pred -CCceEEEEEecCCCEEEEEe
Q 004410 565 -AGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 565 -~~~v~~l~fspdg~~L~sgs 584 (755)
.+.-..+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 01346789999999999998
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-08 Score=106.64 Aligned_cols=262 Identities=10% Similarity=-0.039 Sum_probs=159.8
Q ss_pred eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CCCcEEEEEccCCeeeeeeecCCC
Q 004410 258 RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------EDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 258 ~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
+|.|.|..+... + .++..-..+ .+.++|||++|+++. .++.|.+||+.+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v-~------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-L------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-E------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-E------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 788999765432 2 233322334 699999999988886 368899999999988776643210
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.. ...+ .....++++||| +|+.+.
T Consensus 118 ~~-----------------------------------------------------~~~g--~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 PR-----------------------------------------------------FSVG--PRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp CS-----------------------------------------------------CCBS--CCTTSEEECTTSSCEEEEE
T ss_pred cc-----------------------------------------------------cccC--CCcceEEEcCCCCEEEEEc
Confidence 00 0000 112348899999 777776
Q ss_pred C--CCcEEE--EeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC-----CeEEE-----eccCCcc
Q 004410 407 A--DKTVRL--WQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR-----CQVVD-----YTDIREI 472 (755)
Q Consensus 407 ~--Dg~V~i--Wdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~-----~~~~~-----~~~~~~~ 472 (755)
. ...|.+ +|+.+ +..+.-.+. +.+.|.....+++.+.||++.+.|+.+ +++.. +.....+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 444432221 223453456677778899999999987 44321 1111222
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc-ccCCC---CCeEEEEEcCCCCCEEEEEEC-------
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-KKLPG---KRITGFQFSPSDPSKVIVTSA------- 541 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~-~~~~~---~~I~~v~fsp~d~~~l~s~s~------- 541 (755)
. . .+++..++..+. +.+.+.|+.+........+.+... ..... .....++++| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 2 3 666777777677 999999997643211111111000 00000 1111267999 6666665532
Q ss_pred --CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCC
Q 004410 542 --DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 542 --Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++.+.++|..+........ .......++|+|||+ .+++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~---vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEE---CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2356699988765443332 112578899999998 456666 59999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-08 Score=104.07 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=126.7
Q ss_pred CCCCCEEEEEEcCCCeEEEEeC------CCcEEEEeCCCCeEEEEEec-------CCcEEEEEEeeCCCCEEEEEe---C
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSA------DKTVRLWQVGIDRCLRVFSH-------NNYVTSVAFNPVDDNYFISGS---I 449 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~------Dg~V~iWdl~s~~~~~~~~h-------~~~V~~i~fsp~d~~~l~sgs---~ 449 (755)
+|...+..+++.+++.|+.+.. +..|.+||+.+++.+..+.. ...+..++++|.++..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 4667899999999995555443 57899999999998777742 245789999983344556555 6
Q ss_pred CCcEEEEEcCCCeEEEeccC-Ccc-eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 450 DGKVRIWEVRRCQVVDYTDI-REI-VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~~~~~-~~~-V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
++.|.+||+.+++....... ... .....+.++|..+.+...+|.+..|. ..+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------------~~~~gia 201 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------------LGVNGIV 201 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC----------------------CCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee----------------------cccceeE
Confidence 78999999998887654432 111 00134555777777777777664442 2357899
Q ss_pred EcCCCCCEEEEEECCC-cEEEEECCcce----------eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 528 FSPSDPSKVIVTSADS-LVRVLCGENVV----------GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg-~I~iwd~~~~~----------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
|+| +++.|+++..++ .|..++..... ..+.. .++.+....++++++|.++++...++.|.+||..+
T Consensus 202 ~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 202 LDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER--YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp ECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE--EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred ecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe--cccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence 999 788888777665 55555432110 00111 12333556789999999999999999999999844
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 279 G~ 280 (343)
T 2qe8_A 279 RA 280 (343)
T ss_dssp TE
T ss_pred CC
Confidence 43
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-06 Score=92.26 Aligned_cols=302 Identities=11% Similarity=0.032 Sum_probs=173.5
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cc--cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeee
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGF 322 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H--~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~ 322 (755)
.+..+++++.++.|..+|..++..... ........ .+ ...+.+.- ..++..|+.++.++.|..+|..+++.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWS-VSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE-EECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeee-ecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 466777888889999999876543221 11100000 00 12232221 124557777888999999999999887766
Q ss_pred ecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec---------CCCCCEEE
Q 004410 323 DVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ---------GHSSEVLD 393 (755)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------gh~~~V~~ 393 (755)
............. ....+....++.+..++.... +.+..+. +...++
T Consensus 130 ~~~~~~~~~p~~~------------------~~~v~v~~~~g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~~-- 185 (376)
T 3q7m_A 130 KVAGEALSRPVVS------------------DGLVLIHTSNGQLQALNEADG----AVKWTVNLDMPSLSLRGESAPT-- 185 (376)
T ss_dssp ECSSCCCSCCEEE------------------TTEEEEECTTSEEEEEETTTC----CEEEEEECCC-----CCCCCCE--
T ss_pred eCCCceEcCCEEE------------------CCEEEEEcCCCeEEEEECCCC----cEEEEEeCCCCceeecCCCCcE--
Confidence 5443211111100 011122233344444443221 1111111 111221
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcE-----EE---EEEee-CCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV-----TS---VAFNP-VDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 394 l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V-----~~---i~fsp-~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.. ++.++.++.++.|..+|..+++.+..+...... .. +...| ..+..++.++.++.|..+|..+++.+
T Consensus 186 --~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 186 --TA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp --EE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred --EE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 11 457888888999999999999988776532110 00 10111 13567788888999999999999877
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
..... .....+.. ++..|++++.+|.|..+|..+++.+.... . .....+..... .+..|++++.+|.
T Consensus 263 w~~~~-~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~----~---~~~~~~~~~~~---~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 263 WKREL-GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS----D---LLHRLLTSPVL---YNGNLVVGDSEGY 329 (376)
T ss_dssp EEECC-CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC----T---TTTSCCCCCEE---ETTEEEEECTTSE
T ss_pred eeccC-CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec----c---cCCCcccCCEE---ECCEEEEEeCCCe
Confidence 43332 23344443 56788889999999999999998764321 0 11112222222 2367888999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEE-EEEecCCCEEEEEeCCCcEEEEE
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
|.++|..+......... ....+.. ... .+..|+.++.||.|+.|+
T Consensus 330 l~~~d~~tG~~~~~~~~--~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKV--DSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEETTTCCEEEEEEC--CTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEECCCCcEEEEEec--CCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99999888665554422 1122221 222 256788899999999997
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.5e-08 Score=105.02 Aligned_cols=240 Identities=10% Similarity=-0.002 Sum_probs=149.4
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccc--eeeecccccEEEEEEecCCCEEEEEcC--C
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTG--QEFLAHEGSILTMKFSLDGQYLASGGE--D 305 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~fspdg~~LaSgs~--D 305 (755)
.++++|||++|+++. .++.|.++|..+... ...+... ..+. +......+.|+|||++|+.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~v~g~~r~~-~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIELPDAPRFL-VGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCC-BSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEECCCccccc-cCCCcceEEEcCCCCEEEEEecCCC
Confidence 589999999888775 467899999776432 1111110 0000 0112345799999999998864 5
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|.|.|+.+++.+..+.....
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g~---------------------------------------------------------- 221 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPDC---------------------------------------------------------- 221 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCSE----------------------------------------------------------
T ss_pred CeEEEEECCCCeEEEEEEcCCc----------------------------------------------------------
Confidence 7899999999987766543110
Q ss_pred CCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEE----Ee-cCCc-EEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 386 GHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRV----FS-HNNY-VTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 386 gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~----~~-h~~~-V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
....|++ .+++.+.||.+.+.+..+++.... +. .... ...+.|.+ ++..++..+..+.|.+.|
T Consensus 222 --------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 222 --------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp --------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEE
T ss_pred --------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEe
Confidence 0111111 333344444444444433333211 11 1111 12346788 677766667889999999
Q ss_pred cCCCeEEEecc-------------CCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 458 VRRCQVVDYTD-------------IREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 458 l~~~~~~~~~~-------------~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+.......... .......++++|+++.+++... .+.|.++|+.+.+.+..+...
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--- 369 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--- 369 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---
Confidence 97655431110 0111223789999998888653 357999999999988765432
Q ss_pred cccCCCCCeEEEEEcCCCCC-EEEEEE-CCCcEEEEECCcceeeEE
Q 004410 515 KKKLPGKRITGFQFSPSDPS-KVIVTS-ADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~-~l~s~s-~Dg~I~iwd~~~~~~~~~ 558 (755)
....++.|+| +++ +++++. .++.|.|+|..+......
T Consensus 370 ------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 370 ------HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ------EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 2478899999 676 888887 599999999988655433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-07 Score=109.65 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCc---------------------------------EEEEEEeeCCCCEEEEEeCCC---
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNY---------------------------------VTSVAFNPVDDNYFISGSIDG--- 451 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~---------------------------------V~~i~fsp~d~~~l~sgs~Dg--- 451 (755)
++.|+.||..+++.+-.+..... ...++++| ++++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 68999999999999877742111 13578888 778888877664
Q ss_pred ----------------cEEEEEcCCCeEEEe-cc--CC-------cceEEEEEccCC---CeEEEEeCCCcEEEEECCCC
Q 004410 452 ----------------KVRIWEVRRCQVVDY-TD--IR-------EIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 452 ----------------~V~iwdl~~~~~~~~-~~--~~-------~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~ 502 (755)
.|..+|..+++.+-. .. +. ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999988732 21 21 123333444578 68899999999999999999
Q ss_pred eEeeeeeEEecc---cccCCCC------------------------CeEEEEEcCCCCCEEEEEEC--------------
Q 004410 503 QLYQQNQICLQG---KKKLPGK------------------------RITGFQFSPSDPSKVIVTSA-------------- 541 (755)
Q Consensus 503 ~~~~~~~~~~~~---~~~~~~~------------------------~I~~v~fsp~d~~~l~s~s~-------------- 541 (755)
+++......... ....... .-..++++| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 987654321000 0000000 112568888 6666666543
Q ss_pred -----------------------------CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEE
Q 004410 542 -----------------------------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIW 592 (755)
Q Consensus 542 -----------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iW 592 (755)
.+.|..||..+.+...... +..++....+..++.+++.++.||.|++|
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC---CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 2779999998877666643 33344555677788899999999999999
Q ss_pred EcCCCCc
Q 004410 593 NYSNQDK 599 (755)
Q Consensus 593 d~~~~~~ 599 (755)
|..+++.
T Consensus 504 D~~tG~~ 510 (677)
T 1kb0_A 504 HAATGEK 510 (677)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 9999984
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=109.25 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=173.4
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeee---ccc-ccE-EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHE-GSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~-~~V-~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..|++++.++.|..+|..++..... ........ ... ..+ ..+.. ++..|+.++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK-YDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE-ECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE-EcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 55666777788888888766553222 11100000 000 000 11122 356788889999999999999987765
Q ss_pred eecC-CCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC
Q 004410 322 FDVQ-DTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400 (755)
Q Consensus 322 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~ 400 (755)
+... .... . ......++. .++
T Consensus 147 ~~~~~~~~~---------------------------------------------------~--~~~~~sP~v-----~~g 168 (689)
T 1yiq_A 147 VDTRADHKR---------------------------------------------------S--YTITGAPRV-----VNG 168 (689)
T ss_dssp EECCSCTTS---------------------------------------------------C--CBCCSCCEE-----ETT
T ss_pred ecCcCCCCC---------------------------------------------------C--ccccCCcEE-----ECC
Confidence 5431 1000 0 000011111 134
Q ss_pred eEEEEe------CCCcEEEEeCCCCeEEEEEecC--C------------------------------cEEEEEEeeCCCC
Q 004410 401 FLLSSS------ADKTVRLWQVGIDRCLRVFSHN--N------------------------------YVTSVAFNPVDDN 442 (755)
Q Consensus 401 ~L~s~s------~Dg~V~iWdl~s~~~~~~~~h~--~------------------------------~V~~i~fsp~d~~ 442 (755)
.++.++ .++.|+.||..+++.+-.+... . ....++++| +.+
T Consensus 169 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~ 247 (689)
T 1yiq_A 169 KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELN 247 (689)
T ss_dssp EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTT
T ss_pred EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCC
Confidence 444433 3689999999999988776411 0 012578888 788
Q ss_pred EEEEEeCCCc-------------------EEEEEcCCCeEEE-ecc--CC-------cceEEEEEccCCC---eEEEEeC
Q 004410 443 YFISGSIDGK-------------------VRIWEVRRCQVVD-YTD--IR-------EIVSAVCYCPDGK---GGIVGTM 490 (755)
Q Consensus 443 ~l~sgs~Dg~-------------------V~iwdl~~~~~~~-~~~--~~-------~~V~~v~~spdg~---~la~gs~ 490 (755)
+++.++.++. |..+|..+++.+- +.. +. ..+.......+|+ .++.++.
T Consensus 248 ~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~ 327 (689)
T 1yiq_A 248 LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPK 327 (689)
T ss_dssp EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCT
T ss_pred EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECC
Confidence 8888887764 9999999998873 221 11 1222223334665 7889999
Q ss_pred CCcEEEEECCCCeEeeeeeEEe-------c----------cc---ccC-----------CCCCeEEEEEcCCCCCEEEEE
Q 004410 491 TGNCRFYDIKDNQLYQQNQICL-------Q----------GK---KKL-----------PGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 491 dg~I~iwD~~~~~~~~~~~~~~-------~----------~~---~~~-----------~~~~I~~v~fsp~d~~~l~s~ 539 (755)
+|.++++|..+++++....... . .. ... ....-..++|+| +..++++.
T Consensus 328 ~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~ 406 (689)
T 1yiq_A 328 NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIP 406 (689)
T ss_dssp TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEE
T ss_pred CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEe
Confidence 9999999999999874322110 0 00 000 001122368888 55566654
Q ss_pred EC---------------------------------------------CCcEEEEECCcceeeEEEeeeccCCceEEEEEe
Q 004410 540 SA---------------------------------------------DSLVRVLCGENVVGKFKASAFRVAGSQMFATFT 574 (755)
Q Consensus 540 s~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs 574 (755)
.. +|.|..||..+.+...... +..+.....++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~ 483 (689)
T 1yiq_A 407 AHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP---YVTIFNGGTLS 483 (689)
T ss_dssp EEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEE
T ss_pred ccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc---CCCCccCccce
Confidence 22 3779999998877766653 22333444666
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 575 SDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 575 pdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
..+.+|+.++.||.|+.||..+++..
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCccc
Confidence 78889999999999999999999843
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-06 Score=92.78 Aligned_cols=234 Identities=16% Similarity=0.201 Sum_probs=147.1
Q ss_pred eec--CCCCeeEE-eeCCCeEEEEECCCCcccccccccceeee------c-ccccEEEEEEecCCCEEEEEcCC------
Q 004410 242 TLK--PGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFL------A-HEGSILTMKFSLDGQYLASGGED------ 305 (755)
Q Consensus 242 ~~s--pdg~~las-gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~------~-H~~~V~~l~fspdg~~LaSgs~D------ 305 (755)
.++ +++++|+. |..+++|.|+|+.+...... ..+++. . -...-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~---~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK---IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE---EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCce---eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence 445 78886665 56689999999875433222 222221 0 11234567788999 77776655
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|.+.|..+++.+..+.....
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~---------------------------------------------------------- 185 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRG---------------------------------------------------------- 185 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCT----------------------------------------------------------
T ss_pred CeEEEEECCCCeEEEEEccCCC----------------------------------------------------------
Confidence 6799999888876655432111
Q ss_pred CCCCCEEEEEEcCCC-eEEEEe-------------------CCCcEEEEeCCCCeEEEEEecC---CcEEEEEE--eeCC
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSS-------------------ADKTVRLWQVGIDRCLRVFSHN---NYVTSVAF--NPVD 440 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s-------------------~Dg~V~iWdl~s~~~~~~~~h~---~~V~~i~f--sp~d 440 (755)
...--.++-|+|++ .+++.. ...+|.+||+.+++.+.++... .....|.| +| +
T Consensus 186 -~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-d 263 (462)
T 2ece_A 186 -DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-T 263 (462)
T ss_dssp -TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-T
T ss_pred -CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-C
Confidence 01112356778877 555553 3789999999999888888643 34556666 99 8
Q ss_pred CCEEEEEe------CCCcEEEEEcCCCe-----EEEeccC----------------CcceEEEEEccCCCeEEEEeC-CC
Q 004410 441 DNYFISGS------IDGKVRIWEVRRCQ-----VVDYTDI----------------REIVSAVCYCPDGKGGIVGTM-TG 492 (755)
Q Consensus 441 ~~~l~sgs------~Dg~V~iwdl~~~~-----~~~~~~~----------------~~~V~~v~~spdg~~la~gs~-dg 492 (755)
++++++++ .+++|.+|....+. .+..... ......|.++|||++|.++.. .+
T Consensus 264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d 343 (462)
T 2ece_A 264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG 343 (462)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence 88777666 56788877665543 2111110 245788999999999988776 67
Q ss_pred cEEEEECCCC-eEeeeeeEEecccc--------cCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 493 NCRFYDIKDN-QLYQQNQICLQGKK--------KLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 493 ~I~iwD~~~~-~~~~~~~~~~~~~~--------~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.|.+||+... ++.....+...+.. ..-...-..++++| ++++|+++.
T Consensus 344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999998632 22222223232211 00011357789999 888888876
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.3e-06 Score=88.60 Aligned_cols=270 Identities=11% Similarity=0.069 Sum_probs=156.9
Q ss_pred CCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCce-eEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 296 GQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL-IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 296 g~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
+..|+.++.++.|..+|..+++.+..+........ .......+ ....... ...+....++.+..++....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSKEPALLSGGVTVSG-----GHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSCCCCCEEEEEEEET-----TEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccccCcccccCceEeC-----CEEEEEcCCCEEEEEECCCC
Confidence 56778888889999999999988776655322100 00000000 0000111 11122233444444444321
Q ss_pred eccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEE------EEEEeeCCCCEEEEEe
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT------SVAFNPVDDNYFISGS 448 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~------~i~fsp~d~~~l~sgs 448 (755)
+.+............... .++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.++
T Consensus 124 ----~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~ 195 (376)
T 3q7m_A 124 ----TVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGG 195 (376)
T ss_dssp ----CEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECC
T ss_pred ----CEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEc
Confidence 112222211111111111 24588888999999999999999888776443332 2222 245778888
Q ss_pred CCCcEEEEEcCCCeEEEeccCCcc--------eEEEEEcc--CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 449 IDGKVRIWEVRRCQVVDYTDIREI--------VSAVCYCP--DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 449 ~Dg~V~iwdl~~~~~~~~~~~~~~--------V~~v~~sp--dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
.++.|..+|..+++.+........ +..+...| .+..+++++.+|.+..+|..+++.+.....
T Consensus 196 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-------- 267 (376)
T 3q7m_A 196 DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-------- 267 (376)
T ss_dssp TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--------
Confidence 899999999999887733222111 00011111 356788888999999999999987653221
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.....+.. ++..|++++.++.|..+|..+.......... ....+..+.. .+..|+.++.+|.|+++|..+++
T Consensus 268 --~~~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 --GSVNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp --CCEEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred --CCCCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 12334444 3568888889999999999887666554211 1112222232 35688889999999999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-07 Score=93.07 Aligned_cols=301 Identities=12% Similarity=0.046 Sum_probs=173.0
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
+..+..++. +..++.++.|..|+ ..+.. +.. +..+...+.++...++|. |..++.+ |..+|. +++..
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~-~~~------~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~ 90 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSV-KWF------FKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEK 90 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCE-EES------SCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGG
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcE-EEE------EecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEE
Confidence 355556665 55667788888888 54432 111 112345567777777775 4445544 888885 55554
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+............. .-..+.+..++.+..++.. . +.......+...+.++...++
T Consensus 91 ~~~~~~~~~~~~~~~~------------------~~~l~v~t~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF------------------EDILYVTSMDGHLYAINTD-G----TEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp GGSCC-----CCEEEE------------------TTEEEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTT
T ss_pred EEEECCCCcccCceEE------------------CCEEEEEecCCEEEEEcCC-C----CEEEEEcCCCceeeeeEEcCC
Confidence 4433222111111110 1112223334445555443 1 122233333444556667777
Q ss_pred CeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEE
Q 004410 400 GFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVC 477 (755)
Q Consensus 400 ~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~ 477 (755)
+.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++.. ........+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 788888889999999998 77766664 345566777766 666544 44 8899999 665544 4444445678888
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
..++| .|.+++.++.|..+|.. +....... . ....+..+.+.+ ...|.+++.++.|..+|. +.....
T Consensus 222 ~~~~g-~l~v~t~~~gl~~~~~~-g~~~~~~~--~------~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 222 ISEDG-TIYVTSLDGHLYAINPD-GTEKWRFK--T------GKRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp ECTTS-CEEEEETTTEEEEECTT-SCEEEEEE--C------SSCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEE
T ss_pred ECCCC-eEEEEcCCCeEEEECCC-CCEeEEee--C------CCCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEE
Confidence 88877 56667778889989854 44332211 1 111222344443 456778888989999985 333333
Q ss_pred EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 558 KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.. ......+.++...++|. |..++.+|.+++......+
T Consensus 289 ~~--~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 289 NF--ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EE--ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred EE--EcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 32 22344566677777776 5568899999998876544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-09 Score=115.49 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=104.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCc-ceE-E
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIRE-IVS-A 475 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~-~V~-~ 475 (755)
++.+++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.||.|+.||..+++.+ .+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 34889999999999999999999988866 5565555655 6778888889999999999887764 3322211 110 1
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG 555 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~ 555 (755)
.++. ++..|++++.++.|+.||..+++.+...... . ...++| ++..+++++.|+.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--------~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA--------F----ADSLSP-STSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC--------C----cccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 3456788888999999999999886543211 0 234567 778899999999999999887655
Q ss_pred eEEEeeeccCCceEEEEEecCC---CEEEEEeCCCcEEEEEcCCCC
Q 004410 556 KFKASAFRVAGSQMFATFTSDG---KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 556 ~~~~~~~~~~~~v~~l~fspdg---~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
......... ...++..+. ..+++++.||.|+.||..+++
T Consensus 153 ~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 153 RWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 444321211 122333332 567788999999999999887
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-06 Score=85.90 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=137.1
Q ss_pred CEEEEEEcCCCeEEEE-eC--CCcEEEEeCCCCeEEEEEecCC--cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 390 EVLDLSWSKNGFLLSS-SA--DKTVRLWQVGIDRCLRVFSHNN--YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~-s~--Dg~V~iWdl~s~~~~~~~~h~~--~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
....|.|++++.|+.+ +. ++.|++.|+.+++.+..+.... ....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998844444 33 5899999999999999876333 33345554 3455556667899999999999888
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
...... .-....+++||+.++++..++.|.++|..+.+......+...+. ....++.+.|. ++..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~---p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH---RVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc---ccccceeEEEE--CCEEEEecCCCCe
Confidence 544322 11124466789988888888999999999988776655432211 12346778887 4444444446789
Q ss_pred EEEEECCcceeeEEEeeecc-----------CCceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRV-----------AGSQMFATFTSDGKHV-VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~-----------~~~v~~l~fspdg~~L-~sgs~Dg~I~iWd~~~~~ 598 (755)
|.+.|..+....-.....+. ......++|+|+++.| +++...+.|++-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999988654444322211 1356899999998755 555578899999987654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.3e-09 Score=111.87 Aligned_cols=220 Identities=12% Similarity=0.037 Sum_probs=118.4
Q ss_pred CCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcce
Q 004410 295 DGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVF 374 (755)
Q Consensus 295 dg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (755)
++..|++++.||.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999987654432
Q ss_pred eccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEE-EEEEeeCCCCEEEEEeCC
Q 004410 375 RLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVT-SVAFNPVDDNYFISGSID 450 (755)
Q Consensus 375 ~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~-~i~fsp~d~~~l~sgs~D 450 (755)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+. +..+ . .+..+++++.|
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~-~-~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR-S-SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE-e-cCCEEEEEeCC
Confidence 011111122345 6666789999999999998877665421 1110 0011 1 34577888889
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++.+......- .....+.+
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----------~~~~~~~~ 168 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----------YAASLPED 168 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----------ECCBCCCC
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----------ccCccccC
Confidence 999999999998774332222 24566788899999999999999999998765543211 01112222
Q ss_pred C--CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEE-EEEecCCCEE----EEEeCCCcEEEEEcCCCC
Q 004410 531 S--DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF-ATFTSDGKHV----VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~--d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~-l~fspdg~~L----~sgs~Dg~I~iWd~~~~~ 598 (755)
. ....+++++.|+.|..||..+........ ...++.. ..++++|... +.+ ++.++.+|..+++
T Consensus 169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred CccccceEEEECCCCEEEEEECCCCcEEEEec---CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence 0 11567788999999999998876665542 3344433 4455566432 112 3455666655543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-06 Score=97.44 Aligned_cols=292 Identities=10% Similarity=0.065 Sum_probs=165.5
Q ss_pred CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC------CCcEEEEEccCCeee
Q 004410 246 GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE------DGTVRVWKVIEHERL 319 (755)
Q Consensus 246 dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~------Dg~I~vWdv~~~~~~ 319 (755)
++..+++++.++.|..+|..++..... ........ +...+.+--.-.++ .|+.++. ++.|+.+|..+|+.+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~-~~~~~~~~-~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWH-QNTFEGQK-GSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEE-EETTTTCC-SSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEee-ecCCcCcC-cCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEE
Confidence 456788888899999999876654322 11100000 00111110011134 4454443 799999999999988
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
..+.............+ .... ....|.. ... .....+.......+++.++
T Consensus 204 W~~~~~~~~~~~~~~~~---------~~~~---------------g~~~w~~-----~g~-~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDE---------SMKR---------------AARTWDP-----SGK-WWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp EEEESSCCCTTSCCSSH---------HHHH---------------HHTTSCG-----GGC-HHHHCEECCCCSCEEEETT
T ss_pred EEeccCCCCcccccccc---------cccc---------------ccccccc-----cCc-eeEeCCCcccccceeEcCC
Confidence 77654332210000000 0000 0000000 000 0000011122234667776
Q ss_pred C-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCC---CEEEE
Q 004410 400 G-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDD---NYFIS 446 (755)
Q Consensus 400 ~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~---~~l~s 446 (755)
+ .++.+..++ .|..+|..+++.+-.+. |. ....-+.... ++ ..++.
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~ 332 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILH 332 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEE
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEE
Confidence 6 666655543 59999999999988875 21 1223334444 56 68999
Q ss_pred EeCCCcEEEEEcCCCeEEEeccCC------------cce------------------------EEEEEccCCCeEEEEeC
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTDIR------------EIV------------------------SAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~~~------------~~V------------------------~~v~~spdg~~la~gs~ 490 (755)
++.+|.|+++|..+++++...... ..+ ..++|+|++.++++...
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 999999999999999887322110 001 15688999888888654
Q ss_pred C-------------------------------------------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 491 T-------------------------------------------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 491 d-------------------------------------------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
+ |.|..||+.+++.+...... ..+.+..
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~g~ 483 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---------SPWNGGT 483 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---------SSCCCCE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC---------CCCcCcc
Confidence 2 77999999999987654321 1223333
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
+.. .+.++++++.|+.+++||..+......... .+.....-+.|..+|+.++.
T Consensus 484 ~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 484 LTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEE
T ss_pred eEe-CCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccCCEEEEeCCEEEEE
Confidence 444 667888899999999999998777666532 22222334566788875443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-06 Score=98.11 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=118.2
Q ss_pred EEEEcCCC-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCCC
Q 004410 393 DLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDDN 442 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~~ 442 (755)
.+++.+++ .++.++.++ .|..||+.+++.+-.+. |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 46677765 677776665 39999999999988775 21 1222223333 454
Q ss_pred ---EEEEEeCCCcEEEEEcCCCeEEEeccCCc----------------------------------------ceEEEEEc
Q 004410 443 ---YFISGSIDGKVRIWEVRRCQVVDYTDIRE----------------------------------------IVSAVCYC 479 (755)
Q Consensus 443 ---~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~----------------------------------------~V~~v~~s 479 (755)
.++.++.+|.|+++|..+++++....... .-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998872111000 01126889
Q ss_pred cCCCeEEEEeC---------------------------------------------CCcEEEEECCCCeEeeeeeEEecc
Q 004410 480 PDGKGGIVGTM---------------------------------------------TGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 480 pdg~~la~gs~---------------------------------------------dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+..++++... +|.|+.||+.+++.+......
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888877632 377999999999987654331
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEeC
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPSE 585 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs~ 585 (755)
..+..-.+.. .+.++++++.|+.++.||..+.+...+... .......-+.|..+|+. +++.+.
T Consensus 475 ------~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPA-ASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeC-CCCcccCceEEEECCEEEEEEEec
Confidence 1122223444 667899999999999999998877666532 22222234667788874 444443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-07 Score=95.25 Aligned_cols=234 Identities=9% Similarity=-0.090 Sum_probs=135.6
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeecc-------cccEEEEEEecCCCEEEEE
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAH-------EGSILTMKFSLDGQYLASG 302 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H-------~~~V~~l~fspdg~~LaSg 302 (755)
.++++||++.++++. .++.|.+||..+... ..++..+ ......++|+|||++|+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVa 141 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------IADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------EEEEECCCccccccCCCcceEEEcCCCCEEEEE
Confidence 489999999888876 478899999876442 1222211 0124468999999999988
Q ss_pred cC--CCcEEE--EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcc-----
Q 004410 303 GE--DGTVRV--WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKV----- 373 (755)
Q Consensus 303 s~--Dg~I~v--Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 373 (755)
.. +..|.+ +|+.+ +..+..... ....+.+.... ...+.++.....+...
T Consensus 142 n~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~---------------~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 142 LFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATH---------------YLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp ECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEE---------------ECCCCTTSCEEEECCSSCCCC
T ss_pred ccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEE---------------EEEcCCCCEEEEECccccccC
Confidence 64 457888 98877 344433211 10111111100 0111111111111111
Q ss_pred eeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEEec-----------CCcEEEEEEeeC
Q 004410 374 FRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVFSH-----------NNYVTSVAFNPV 439 (755)
Q Consensus 374 ~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~~h-----------~~~V~~i~fsp~ 439 (755)
..........+.-...+. . .+++ .++..+. +.|.+.|+.+.. .+..+.. ......++++|
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~- 273 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK- 273 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-
Confidence 000000000001112233 3 4444 6666666 999999986542 3332211 11112268999
Q ss_pred CCCEEEEEeC---------CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEE-Ee-CCCcEEEEECCCCeEeeee
Q 004410 440 DDNYFISGSI---------DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIV-GT-MTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 440 d~~~l~sgs~---------Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~-gs-~dg~I~iwD~~~~~~~~~~ 508 (755)
+++.++.+.. ++.+.++|+.+.+++...........++|+|||+.+++ .. .++.|.++|+.+++.+..+
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 7777765533 23566999999998876656667899999999986544 44 4899999999999987654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-06 Score=84.33 Aligned_cols=201 Identities=8% Similarity=0.007 Sum_probs=133.7
Q ss_pred EEEEEEecCCCEEEEEcC--CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 287 ILTMKFSLDGQYLASGGE--DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~--Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...|.|++|+.+.++.+. ++.|++.|+.+++.+..+....
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------------- 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------------- 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT--------------------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC--------------------------------------
Confidence 678999998766665553 5799999999998766543211
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecC-CcEEEEEEeeCCCCE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHN-NYVTSVAFNPVDDNY 443 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-~~V~~i~fsp~d~~~ 443 (755)
+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...+++ +++.
T Consensus 65 ----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~~ 118 (266)
T 2iwa_A 65 ----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGKI 118 (266)
T ss_dssp ----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSSS
T ss_pred ----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCCE
Confidence 0 1112344543224444557899999999999999998644 22 244666 6666
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEeccCC------cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-ecc--
Q 004410 444 FISGSIDGKVRIWEVRRCQVVDYTDIR------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQG-- 514 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~~~~~~------~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~-- 514 (755)
++.+..+++|.++|..+.+.+...... ..+..+.|. +|...+....++.|.+.|+.+++.+..+... +..
T Consensus 119 l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~ 197 (266)
T 2iwa_A 119 LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL 197 (266)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH
T ss_pred EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 666667899999999998776432221 136677887 7754444446789999999999987765432 100
Q ss_pred --cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 515 --KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 515 --~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.........++++|+|....+++++...+.+.+.++..
T Consensus 198 ~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 198 IDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 01112346799999995555666666788888887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-07 Score=98.53 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=118.9
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC------------------------------------
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG------------------------------------ 451 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg------------------------------------ 451 (755)
++.|.+.|..+.+.+..+.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578889999988888876444567788898 888888877553
Q ss_pred --cEEEEEcCC--CeE-EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEe------eeeeEEecccccCC
Q 004410 452 --KVRIWEVRR--CQV-VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLY------QQNQICLQGKKKLP 519 (755)
Q Consensus 452 --~V~iwdl~~--~~~-~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~------~~~~~~~~~~~~~~ 519 (755)
.|.|.|.++ ++. +..........++.++|||++++++. .+.+|.+||+.+.+.. ....+.. ....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~v 329 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPEL 329 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBC
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE---EcCC
Confidence 366666666 333 33333344567899999999888765 5788999999965310 0000000 1123
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--------eeEEEeeeccCCce-----EEEEEecCCCEEEEEeC-
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV--------GKFKASAFRVAGSQ-----MFATFTSDGKHVVSPSE- 585 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~--------~~~~~~~~~~~~~v-----~~l~fspdg~~L~sgs~- 585 (755)
+.....++|+| ++...++.-.|++|.+|++.... .........|-.+- ....++|||++|+++..
T Consensus 330 G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 330 GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred CCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 45788999999 66555566679999999977621 11111112222111 12245899999999864
Q ss_pred --CCc----------EEEEEcCCCC
Q 004410 586 --DSN----------IYIWNYSNQD 598 (755)
Q Consensus 586 --Dg~----------I~iWd~~~~~ 598 (755)
|.. -.++|+..++
T Consensus 409 skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 409 SKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CccccccCCCCCCCcceEEEcCCCc
Confidence 432 1889995544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00026 Score=84.19 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=187.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccce--eeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~ 315 (755)
+.++...++|.+.+ |+.++-+.+|+...... ..+.... ...-....|.+|...++|.+.+ |+.+ -|.+|+..+
T Consensus 217 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 217 IQAILQQSPTRIWV-ATEGAGLFLINPKTKEI--KNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp EEEEEEEETTEEEE-EEBSSCEEEEETTTTEE--EEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeE--EEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 44556666666544 44444488888654321 1110000 0001235799999998887555 4445 488899877
Q ss_pred CeeeeeeecCCC-----CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec-----
Q 004410 316 HERLDGFDVQDT-----DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ----- 385 (755)
Q Consensus 316 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 385 (755)
+....-...... ......+..+....+. .++...-+..++..... ...+.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW---------------igt~~~Gl~~~~~~~~~-----~~~~~~~~~~ 351 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW---------------LGTYFGGLNYYHPIRNR-----FKNIRNIPYK 351 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE---------------EEESSSCEEEECGGGGS-----SEEECCCTTS
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE---------------EEECCCCeEEeCCCccc-----ceEEcCCCCC
Confidence 654322111100 0011111111111111 12222223333322110 11111
Q ss_pred --CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---------cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 386 --GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---------HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 386 --gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
-....|.++...++|.|..|+.++-|..||..+++...... ....|.++...+ ++++|..|+.++-|.
T Consensus 352 ~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLS 430 (795)
T ss_dssp SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEE
T ss_pred CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCcee
Confidence 12456999999888888889999889999998876554321 135799999887 777577788878899
Q ss_pred EEEcCCCeEEEecc-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 455 IWEVRRCQVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 455 iwdl~~~~~~~~~~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
+||..+++...+.. ....|.++...++|. |.+|+. +.+.+||..+++....... ..........|.++...
T Consensus 431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEEC
T ss_pred EEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEEC
Confidence 99999887765542 245789999888876 455555 5688999988765432110 00012234678888888
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEE---eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKA---SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+ ++. |.+++. +-|..|+..+....+.. ........|.++...++|.+.++.. . .|..||..+++
T Consensus 507 ~-~g~-lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 507 S-HKR-LWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp T-TCC-EEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred C-CCC-EEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 7 555 444445 56788886553321110 0011345788999999998766554 3 68889876654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-05 Score=85.08 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=120.1
Q ss_pred CEEEEEEcC-CCeEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeC--------------
Q 004410 390 EVLDLSWSK-NGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSI-------------- 449 (755)
Q Consensus 390 ~V~~l~~s~-~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~-------------- 449 (755)
.+..+++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 477899997 6777777666668899977654322211 12357889988734566665432
Q ss_pred ---CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEE
Q 004410 450 ---DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 450 ---Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
++.|..||..+++...+...-.....|+++|+|+.|+++ +..+.|.+|++.+...-. ... +. ... . ...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~-~~---~~~-g-P~g 233 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEV-LV---KIP-N-PGN 233 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEE-EE---ECS-S-EEE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cce-EE---eCC-C-CCC
Confidence 367889998877655433323445679999999977766 456889999988532100 000 00 011 2 678
Q ss_pred EEEcCCCCCEEEEEEC----------CCcEEEEECCcceeeEEEeeec-c-CCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 526 FQFSPSDPSKVIVTSA----------DSLVRVLCGENVVGKFKASAFR-V-AGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~~~~~-~-~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+++.+ ++.+.++... .+.|..+|..... ........ . ...++.+++ .+++++++....+.|.+++
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~-~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI-LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE-EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCE-EEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 99998 6666555544 4667888764321 11111111 1 234566666 4666666666788999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
+....
T Consensus 311 ~~~~~ 315 (322)
T 2fp8_A 311 YDKKG 315 (322)
T ss_dssp C----
T ss_pred ccccc
Confidence 86443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00048 Score=81.89 Aligned_cols=325 Identities=11% Similarity=0.059 Sum_probs=188.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
+.++...+++.+.+ |+.++.|..|+...... ..+. ...+...|.++...++|.+.+. +.++-|.+|+..+++
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~--~~~~----~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTF--EKVI----PILGTKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCE--EECC--------CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeE--EEec----CCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCe
Confidence 45566677776544 56554588888654331 1110 0113467999998888876554 444348889987765
Q ss_pred eeeeeecCCC------CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec--c-CccceEecCCC
Q 004410 318 RLDGFDVQDT------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL--L-EKPLHEFQGHS 388 (755)
Q Consensus 318 ~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~gh~ 388 (755)
... +..... ......+..+....+.... .. -+..++...... . ..+.....-..
T Consensus 247 ~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---------------~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (795)
T 4a2l_A 247 IKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGT---------------FN-DLNIYHEGTDSFASYSSNPVENGSLSQ 309 (795)
T ss_dssp EEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEE---------------SS-CEEEEETTTTEEEEECCCTTSTTSCSS
T ss_pred EEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEe---------------CC-hhheEcCCCCeEEEEecCCCCCCCCCC
Confidence 432 211100 0011111112222222111 11 122222211100 0 00000001123
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..|.++...++|.|..|+.++-|..|+..++....... ....|.++...+ +++ |..|+.++-|..||..++
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCC
Confidence 57999999999988899998999999876654322211 245699998876 555 555788878999999887
Q ss_pred eEEEecc---------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 462 QVVDYTD---------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 462 ~~~~~~~---------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+...+.. ....|.+++..++|..|.+|+.++-|.+||..+++..... ..........|.++...+ +
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~----~~~~~l~~~~v~~i~~d~-~ 462 (795)
T 4a2l_A 388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN----QRNSQLVNENVYAILPDG-E 462 (795)
T ss_dssp CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC----TTTSCCSCSCEEEEEECS-S
T ss_pred cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee----cCCCCcCCCeeEEEEECC-C
Confidence 7654431 2356899999888876888898888999999887654311 001113456788988877 5
Q ss_pred CCEEEEEECCCcEEEEECCcceeeEEEee----eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 533 PSKVIVTSADSLVRVLCGENVVGKFKASA----FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+. |.+|+. +-+.+|+..+......... .-....|.++...++|.+.+... +.|+.||..+++
T Consensus 463 g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 463 GN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 55 444555 4588888765432211100 01235688999999998776554 568889876553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-06 Score=81.55 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=130.1
Q ss_pred CCCCC--EEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 386 GHSSE--VLDLSWSKNG-FLLSSSADK--TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 386 gh~~~--V~~l~~s~~~-~L~s~s~Dg--~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
.|... ...|.|+ ++ .+.+.+.+| .|+++|+.+++.+..+.-........+.+.++.+++..-.++.+.+||..+
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 45443 4789998 66 566666665 899999999999998875555544334442345555555689999999999
Q ss_pred CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 461 ~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.+++........- ..+++|++.|++...++.|.++|..+.+......+...+. .-..++.+.|. ++...+..-
T Consensus 117 ~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~---~~~~lNELe~~--~G~lyan~w 189 (262)
T 3nol_A 117 LRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE---ELPELNELEWV--DGEIFANVW 189 (262)
T ss_dssp CCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEET
T ss_pred CcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc---cccccceeEEE--CCEEEEEEc
Confidence 9888544433322 3344688888887778889999999998877655533221 12345667775 455444444
Q ss_pred CCCcEEEEECCcceeeEEEeeec----------cCCceEEEEEecCCCEEEEEeCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAFR----------VAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~~----------~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.++.|.+.|..+....-.....+ .....+.++|+|+++.|+..+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 68899999988765444433211 12356899999998888777653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00023 Score=72.29 Aligned_cols=253 Identities=6% Similarity=-0.069 Sum_probs=145.1
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEccCCeeeeeeecCC
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIEHERLDGFDVQD 326 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~~~~~~~~~~~~ 326 (755)
.+|+.+.. +.|+.++....... .......+......+..++|++++..|. +-..++.|.+++........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~--~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~------ 72 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMK--KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT------ 72 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBC--GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE------
T ss_pred cEEEEEcC-CeEEEEEecCcccc--cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE------
Confidence 34555543 47888887653321 1100011222234678999999765554 55557789998875432100
Q ss_pred CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE-E
Q 004410 327 TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL-S 404 (755)
Q Consensus 327 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~-s 404 (755)
.+.........+++.+++ .|+ +
T Consensus 73 --------------------------------------------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 73 --------------------------------------------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp --------------------------------------------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred --------------------------------------------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 001112356789999864 444 4
Q ss_pred EeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcCCCeEEEec-cCCcceEEEEEc
Q 004410 405 SSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQVVDYT-DIREIVSAVCYC 479 (755)
Q Consensus 405 ~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~~~~~~~~~-~~~~~V~~v~~s 479 (755)
-...+.|.++++.......... .......++++| ++..|+.+.. .+.|..+++.......+. ........++++
T Consensus 97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d 175 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD 175 (267)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence 4556789999987544332332 225678999999 5555544443 368888888654322221 223467899999
Q ss_pred cCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEE
Q 004410 480 PDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFK 558 (755)
Q Consensus 480 pdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~ 558 (755)
|++..|+++. ..+.|.++|+.+...... .. ......+++.. ++.++++....+.|.++|..+......
T Consensus 176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence 9887776655 457899999986543221 11 12234566553 334444444568999999876544333
Q ss_pred EeeeccCCceEEEEEecCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGK 578 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~ 578 (755)
.. .+.......+++.|++.
T Consensus 245 i~-~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 245 FH-PHKQTRLYGITIALSQC 263 (267)
T ss_dssp EC-CSSCCCCCCEEEECSCC
T ss_pred Ec-cccccccceeeecCccC
Confidence 31 12222356777877764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.7e-05 Score=80.68 Aligned_cols=244 Identities=9% Similarity=0.027 Sum_probs=141.0
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccce--------------eeecccccEEEEEEec-CCCEEEEE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQ--------------EFLAHEGSILTMKFSL-DGQYLASG 302 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~--------------~l~~H~~~V~~l~fsp-dg~~LaSg 302 (755)
...++++++|+++.++..++.|..|+...... ..+.... ......+.+..|++.+ +|+++++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 44589999999888888899999998664321 1110000 0011224578999998 66555443
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccce
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLH 382 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (755)
. .+.|.+++..++.. ..+..
T Consensus 99 ~-~~~i~~~d~~~g~~-~~~~~---------------------------------------------------------- 118 (322)
T 2fp8_A 99 C-YYHLSVVGSEGGHA-TQLAT---------------------------------------------------------- 118 (322)
T ss_dssp T-TTEEEEECTTCEEC-EEEES----------------------------------------------------------
T ss_pred C-CCCEEEEeCCCCEE-EEecc----------------------------------------------------------
Confidence 3 44477777654321 11100
Q ss_pred Eec-CCCCCEEEEEEcC-CCeEEEEeC------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 383 EFQ-GHSSEVLDLSWSK-NGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 383 ~~~-gh~~~V~~l~~s~-~~~L~s~s~------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
... .......++++.+ +|.|..+.. ++.|..||..+++.............|+++| +++
T Consensus 119 ~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-dg~ 197 (322)
T 2fp8_A 119 SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA-DSS 197 (322)
T ss_dssp EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECT-TSS
T ss_pred cCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECC-CCC
Confidence 000 0112356688888 774444332 3678889988776544433334456799999 887
Q ss_pred EEEEE-eCCCcEEEEEcCCC---eEEEeccCCcceEEEEEccCCCeEEEEeC----------CCcEEEEECCCCeEeeee
Q 004410 443 YFISG-SIDGKVRIWEVRRC---QVVDYTDIREIVSAVCYCPDGKGGIVGTM----------TGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 443 ~l~sg-s~Dg~V~iwdl~~~---~~~~~~~~~~~V~~v~~spdg~~la~gs~----------dg~I~iwD~~~~~~~~~~ 508 (755)
.|+.+ ...+.|.+|++... ....+..... ...+++.++|++.++... .+.|..+|.. ++.+..+
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence 55544 56689999998752 2222112233 788999999986555443 4678888875 4444322
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.. .. ......++.+++. ++.++++....+.|.+++...
T Consensus 276 ~~--~~--g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 276 PL--PP--PFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EC--CT--TTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC--
T ss_pred EC--CC--CCccccceEEEEe--CCEEEEeecCCCceEEEeccc
Confidence 11 11 0112346666663 555555555678888887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-05 Score=93.56 Aligned_cols=287 Identities=10% Similarity=0.093 Sum_probs=168.5
Q ss_pred CCeeEEeeCCCeEEEEECCCCcccccccccceeee---ccc-ccE-EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 247 DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL---AHE-GSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 247 g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~---~H~-~~V-~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+..+++++.++.|..+|..++..... ........ .+. ..+ ..+.+ ++..|+.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWR-YDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEE-ECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceE-ECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 45666677788888888765543222 11110000 000 000 11222 355788888999999999999987765
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCe
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~ 401 (755)
+........ ......++. .++.
T Consensus 143 ~~~~~~~~~-----------------------------------------------------~~~~~~P~v-----~~~~ 164 (668)
T 1kv9_A 143 QQTTDPAKP-----------------------------------------------------YSITGAPRV-----VKGK 164 (668)
T ss_dssp EECSCTTSS-----------------------------------------------------CBCCSCCEE-----ETTE
T ss_pred eccCCCCCc-----------------------------------------------------ceecCCCEE-----ECCE
Confidence 543211000 000011111 1344
Q ss_pred EEEEe------CCCcEEEEeCCCCeEEEEEecC--C------------------------------cEEEEEEeeCCCCE
Q 004410 402 LLSSS------ADKTVRLWQVGIDRCLRVFSHN--N------------------------------YVTSVAFNPVDDNY 443 (755)
Q Consensus 402 L~s~s------~Dg~V~iWdl~s~~~~~~~~h~--~------------------------------~V~~i~fsp~d~~~ 443 (755)
++.+. .++.|+.+|..+++.+-.+... . ....+++.| ..++
T Consensus 165 v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~ 243 (668)
T 1kv9_A 165 VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDL 243 (668)
T ss_dssp EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTE
T ss_pred EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCE
Confidence 44433 2588999999999988777421 0 012467888 7788
Q ss_pred EEEEeCCCc-------------------EEEEEcCCCeEEE-ecc--CC-------cceEEEEEccCCC---eEEEEeCC
Q 004410 444 FISGSIDGK-------------------VRIWEVRRCQVVD-YTD--IR-------EIVSAVCYCPDGK---GGIVGTMT 491 (755)
Q Consensus 444 l~sgs~Dg~-------------------V~iwdl~~~~~~~-~~~--~~-------~~V~~v~~spdg~---~la~gs~d 491 (755)
++.++.++. |..+|..+++.+- +.. +. .......+..+|+ .+++++.+
T Consensus 244 vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~ 323 (668)
T 1kv9_A 244 LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKN 323 (668)
T ss_dssp EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTT
T ss_pred EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCC
Confidence 888877663 9999999999873 221 21 2233333444775 68889999
Q ss_pred CcEEEEECCCCeEeeeeeEE-------eccc---------ccCC------------CCCeEEEEEcCCCCCEEEEEE---
Q 004410 492 GNCRFYDIKDNQLYQQNQIC-------LQGK---------KKLP------------GKRITGFQFSPSDPSKVIVTS--- 540 (755)
Q Consensus 492 g~I~iwD~~~~~~~~~~~~~-------~~~~---------~~~~------------~~~I~~v~fsp~d~~~l~s~s--- 540 (755)
|.++++|..+++++...... +... .... ...-..++++| +..++++..
T Consensus 324 G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~ 402 (668)
T 1kv9_A 324 GFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEV 402 (668)
T ss_dssp SEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEEC
T ss_pred CEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEecccc
Confidence 99999999999987432210 0000 0000 00011256777 444444311
Q ss_pred ---------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 541 ---------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 541 ---------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.+|.|..||..+.....+... ........+...+.+|+.++.|+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg 479 (668)
T 1kv9_A 403 PGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAG 479 (668)
T ss_dssp CEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTS
T ss_pred ceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcc
Confidence 237799999988777666532 22333344556788999999999
Q ss_pred cEEEEEcCCCCc
Q 004410 588 NIYIWNYSNQDK 599 (755)
Q Consensus 588 ~I~iWd~~~~~~ 599 (755)
.|++||..+++.
T Consensus 480 ~l~a~d~~tG~~ 491 (668)
T 1kv9_A 480 QMHAYSADKGEA 491 (668)
T ss_dssp EEEEEETTTCCE
T ss_pred cchhhhhhcChh
Confidence 999999999984
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=8.1e-06 Score=91.24 Aligned_cols=186 Identities=16% Similarity=0.219 Sum_probs=128.3
Q ss_pred CC-eEE-EEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEE-e-eCCCCEEEEEe------------------CCCcEE
Q 004410 399 NG-FLL-SSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAF-N-PVDDNYFISGS------------------IDGKVR 454 (755)
Q Consensus 399 ~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~f-s-p~d~~~l~sgs------------------~Dg~V~ 454 (755)
|| +|. +...+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.|.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 444 44456779999999999988554 4566889998 4 8 888888874 345799
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC--------------------------------------cEEE
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG--------------------------------------NCRF 496 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg--------------------------------------~I~i 496 (755)
+.|..+.+++...........++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999988875443333556788999999999988653 2455
Q ss_pred EECCC--CeE-eeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCccee----------eEEEeee
Q 004410 497 YDIKD--NQL-YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVG----------KFKASAF 562 (755)
Q Consensus 497 wD~~~--~~~-~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~----------~~~~~~~ 562 (755)
.|..+ ++. +..... .....++.++| |++++++++ .+.+|.++|..+... ..... .
T Consensus 259 ID~~~~~~~~~~~~Ipv---------g~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~-v 327 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI---------ANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-P 327 (595)
T ss_dssp EECSGGGCCSSEEEEEE---------ESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-C
T ss_pred EeCcccCCceeEEEEec---------CCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-c
Confidence 55554 222 111111 23456789999 777666554 688999999886421 11111 2
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
........++|+++|...++.-.|+.|.+||+.+
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3345678899999994445666899999999987
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-05 Score=79.70 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=128.4
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccC
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDI 469 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~ 469 (755)
-...|.|+.+..+.+.+.+|.|+++|+.+++.+..+ -..........+..+.+++..-.++.+.+||..+.+++.....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 457889885337778888899999999999988877 5444444333332456666666789999999999998854443
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
...-..++ +|++.|+++..++.|+++|..+.+.+....+...+. .-..++.+.|. ++...+..-.++.|.+.|
T Consensus 135 ~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~---~v~~lNeLe~~--dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 135 SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ---PVELINELECA--NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTCSEEEEEC
T ss_pred CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc---ccccccccEEe--CCEEEEEECCCCeEEEEe
Confidence 33333444 688899888889999999999998887665543322 22355777776 455444444678999999
Q ss_pred CCcceeeEEEeeec-----------cCCceEEEEEecCCCEEEEEeC
Q 004410 550 GENVVGKFKASAFR-----------VAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 550 ~~~~~~~~~~~~~~-----------~~~~v~~l~fspdg~~L~sgs~ 585 (755)
..+....-.....+ .....+.++++|+++.|+..+.
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 88765444332221 1235689999998766665553
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.1e-05 Score=74.02 Aligned_cols=190 Identities=9% Similarity=-0.036 Sum_probs=129.3
Q ss_pred CCEEEEEEcCCCeEEEEeCC--CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 389 SEVLDLSWSKNGFLLSSSAD--KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~D--g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.-...|.|+.+-.+.+.+.+ ..|+.+|+.+++.+..+.-..........+.++.+++..-.++.+.+||..+.+++..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 45778999873355566665 4899999999999998875555444434442455566666789999999999998854
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEE
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVR 546 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~ 546 (755)
......-..+ .++++.|+++..++.|.++|..+.+.+....+...+. .-..++.+.+. ++...+..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~---~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR---PLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE---ECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc---ccccceeeEEe--CCEEEEEECCCCeEE
Confidence 4433333344 4678888888888999999999998877665543221 12355667765 455444444678899
Q ss_pred EEECCcceeeEEEeeec-----------cCCceEEEEEecCCCEEEEEeC
Q 004410 547 VLCGENVVGKFKASAFR-----------VAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~-----------~~~~v~~l~fspdg~~L~sgs~ 585 (755)
+.|..+....-.....+ .....+.++++|+++.|+..+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99988765444432221 1235689999998887776664
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-05 Score=78.41 Aligned_cols=187 Identities=13% Similarity=0.139 Sum_probs=120.9
Q ss_pred EEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 287 ILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
...|.|+ ++.+..+.+.+| .|+++|+.+++.+..+.....
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4788998 777777877776 899999999987665542110
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
.---.++...+...+..-.++.+.+||..+.+.+..+.....= ..+++ ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTH-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEE-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEec-CCCEE
Confidence 0011233332223333446889999999999999999754432 33345 56666
Q ss_pred EEEeCCCcEEEEEcCCCeEEEeccC---C---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc--
Q 004410 445 ISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK-- 515 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~~~~~~~~~~~---~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~-- 515 (755)
+....+++|.++|..+.+++..... . ..+..+.|. +|+..+..-.++.|.+.|..+++....+... +...
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 6666678899999999877643221 1 234456775 7765554546889999999999988765432 1110
Q ss_pred -ccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 516 -KKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 516 -~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......-.++++|+| +.+.|++++
T Consensus 219 ~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp SCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred cccCcCCceEEEEEcC-CCCEEEEEC
Confidence 112234679999999 555555554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00017 Score=73.21 Aligned_cols=196 Identities=8% Similarity=-0.016 Sum_probs=124.5
Q ss_pred CEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe
Q 004410 390 EVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~ 466 (755)
.+..++|.+++ .|+ +-...+.|..+++........+. .......++++|..+.++++-...+.|.++++.......+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 46789999865 444 44567899999998765444443 2357899999983345555556678999999876433222
Q ss_pred cc-CCcceEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 467 TD-IREIVSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 467 ~~-~~~~V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.. .......++++|++..|+++.. .+.|..+++....... +. ........+++++|+++.++++-...
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 22 2246789999997666666554 3688888886533211 10 01234678999999434455555567
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
+.|.+++.......... . .......+++. +.+|+.+. ..+.|.++|..+++
T Consensus 189 ~~I~~~~~~g~~~~~~~--~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVL--E-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTEEEEEEEE--E-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEecCCCceEEEe--c-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 89999998753322222 1 22334566654 45555554 56889999998775
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00034 Score=72.71 Aligned_cols=227 Identities=13% Similarity=0.084 Sum_probs=136.4
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCc
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (755)
.....++|+++|+++++-..++.|..||..... ...+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~------------------------------------------ 68 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA------------------------------------------ 68 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE------------------------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE------------------------------------------
Confidence 356789999999988877778888888764321 1000
Q ss_pred eEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe--CCC-cEEEEeCCCCeEEEEEe--cCCcEEEEEEeeC
Q 004410 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS--ADK-TVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV 439 (755)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s--~Dg-~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~ 439 (755)
.....+..+++.+++.|+.+. .++ .|..+|..+++...... .......++..+
T Consensus 69 ---------------------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~- 126 (306)
T 2p4o_A 69 ---------------------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS- 126 (306)
T ss_dssp ---------------------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-
T ss_pred ---------------------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-
Confidence 011246788999998444443 222 47777877877654443 223345555554
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe--EEEec---------cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCC-CeEee
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQ--VVDYT---------DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKD-NQLYQ 506 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~--~~~~~---------~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~-~~~~~ 506 (755)
++..+++-..++.|.++|...+. +.... ..-.....+ +|+++.|+++. ..+.|..|++.. +.+..
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~ 204 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 204 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence 45455555568899999987653 22111 111234555 88888776654 567899999875 33211
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe---cCCCEEEEE
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT---SDGKHVVSP 583 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs---pdg~~L~sg 583 (755)
...... ......+++.+ +++++++....+.|.+++..... .............++++|. ++++.|+.+
T Consensus 205 -~~~~~~------~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~-~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 205 -PEIFVE------QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRST-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -CEEEEE------SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCE-EEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -cEEEec------cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCE-EEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 111000 12456688998 77777777778899999865221 1111111123568899998 898877776
Q ss_pred eCCC
Q 004410 584 SEDS 587 (755)
Q Consensus 584 s~Dg 587 (755)
+..+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 6543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-05 Score=75.51 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=123.9
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
-...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ ....
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------------------------------------- 95 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------------------------------------- 95 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT--------------------------------------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC--------------------------------------
Confidence 34678887 4677888889999999999998865443 1110
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEE
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~ 445 (755)
..-..+++..+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|+
T Consensus 96 -----------------------~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~ 149 (268)
T 3nok_A 96 -----------------------IFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLV 149 (268)
T ss_dssp -----------------------CCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEE
T ss_pred -----------------------cceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEE
Confidence 00112344333333445578999999999999999997544434444 4 567777
Q ss_pred EEeCCCcEEEEEcCCCeEEEecc---CCc---ceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc---
Q 004410 446 SGSIDGKVRIWEVRRCQVVDYTD---IRE---IVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK--- 515 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~~~~~---~~~---~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~--- 515 (755)
.+..+++|.++|..+.+++.... ... .++.+.|. +|+..+..-.++.|.+.|..+++.+..+... +...
T Consensus 150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence 77778999999999988774222 111 34566776 7755544446889999999999988765542 1110
Q ss_pred -ccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 -KKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 -~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
......-.+++++.|....++++|
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 112335679999999555555555
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0002 Score=81.63 Aligned_cols=196 Identities=11% Similarity=-0.017 Sum_probs=119.7
Q ss_pred CCeEEEEeC------CCcEEEEeCCCCeEEEEEecCCcE---------------------------------------EE
Q 004410 399 NGFLLSSSA------DKTVRLWQVGIDRCLRVFSHNNYV---------------------------------------TS 433 (755)
Q Consensus 399 ~~~L~s~s~------Dg~V~iWdl~s~~~~~~~~h~~~V---------------------------------------~~ 433 (755)
++.++.++. ++.|+.+|..+++.+-.+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 345555544 789999999999988777532211 13
Q ss_pred EEEeeCCCCEEEEEeCC----------------CcEEEEEcCCCeEEEecc---CC-------cceEEEEEccCCC---e
Q 004410 434 VAFNPVDDNYFISGSID----------------GKVRIWEVRRCQVVDYTD---IR-------EIVSAVCYCPDGK---G 484 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~D----------------g~V~iwdl~~~~~~~~~~---~~-------~~V~~v~~spdg~---~ 484 (755)
+++.+ ....++.+..+ +.|..+|..+++.+-... +. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56667 55666666532 359999999998873221 11 1111223335774 5
Q ss_pred EEEEeCCCcEEEEECCCCeEeeeeeEEecc----ccc-CCCCC--------------------------eEEEEEcCCCC
Q 004410 485 GIVGTMTGNCRFYDIKDNQLYQQNQICLQG----KKK-LPGKR--------------------------ITGFQFSPSDP 533 (755)
Q Consensus 485 la~gs~dg~I~iwD~~~~~~~~~~~~~~~~----~~~-~~~~~--------------------------I~~v~fsp~d~ 533 (755)
+++++.+|.++++|..+++++......... ... ....+ -..++++| +.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ES 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CC
Confidence 778899999999999999887654321000 000 00001 12456777 44
Q ss_pred CEEEEEE-------------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC
Q 004410 534 SKVIVTS-------------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576 (755)
Q Consensus 534 ~~l~s~s-------------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd 576 (755)
.++++.. .++.|..||..+.....+... ...+....+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEEC
Confidence 5555543 347888999887766655432 122222333445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 004410 577 GKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 577 g~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
+..|+.++.||.|+.||..+++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCCE
Confidence 67788899999999999999883
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0013 Score=78.06 Aligned_cols=328 Identities=9% Similarity=0.001 Sum_probs=180.4
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCccccccccc---------ceeeecccccEEEEEEecCCCEEEEEcCCCc
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYT---------GQEFLAHEGSILTMKFSLDGQYLASGGEDGT 307 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~---------~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~ 307 (755)
.+.++...++|.+ ..|+..+-|.+++...... ..+.. .....-....|.+|...++|. |..|+.++-
T Consensus 259 ~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 259 YIFSIKQLKDNKL-WIATELNGIMILDLQQNQF--LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CEEEEEECTTSEE-EEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred eEEEEEECCCCCE-EEEeCCCCeEEECCCCCee--eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 3555666677664 4455545577888654321 11100 000012346799999998886 555666677
Q ss_pred EEEEEccCCeeeeeeecC-------C-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCc
Q 004410 308 VRVWKVIEHERLDGFDVQ-------D-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEK 379 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (755)
|..++..+..... +... . .......+..+....+. .++...-+..++........-
T Consensus 335 l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW---------------igt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 335 INFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDGQGKLW---------------IGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECTTSCEE---------------EEEBSSCEEEEETTEEEEECC
T ss_pred EEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcCCCCEE---------------EEeCCCcEEEEECCCCeEEEc
Confidence 8888876543221 1110 0 00001111111111111 111111222232221111000
Q ss_pred cceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..........|.++...+++.|..|+.++.|..+|..+++...... ....|.++...+ ++. |..|+. +-|.+|
T Consensus 399 -~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~ 474 (781)
T 3v9f_A 399 -KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK-IWIGTH-AGVFVI 474 (781)
T ss_dssp ------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE-EEEEET-TEEEEE
T ss_pred -cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC-EEEEEC-CceEEE
Confidence 0000123467999998888888888888889999988876543321 346799998876 555 555555 568899
Q ss_pred EcCCCeEEEeccC------CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 457 EVRRCQVVDYTDI------REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 457 dl~~~~~~~~~~~------~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
|..+++....... ...|.++...++|. |.+|+..+-+..||..+++... +..........|.++...+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-----~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRK-----FNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEE-----ECTTTTCSCSCEEEEEECT
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEE-----ccCCCCCCCCeeEEEEECC
Confidence 9887665433221 35789999988886 5566765558889988775432 1111223456788988877
Q ss_pred CCCCEEEEEECCCcEEEEECCcceeeEEEeeec-cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 531 SDPSKVIVTSADSLVRVLCGENVVGKFKASAFR-VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++. |.+++.+|.|..||..+..........+ ....|.++...++|.+.+++ .+ -|..|+..+..
T Consensus 549 -~g~-lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~-Gl~~~~~~~~~ 613 (781)
T 3v9f_A 549 -KGQ-MWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT-GISCYITSKKC 613 (781)
T ss_dssp -TSC-EEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS-CEEEEETTTTE
T ss_pred -CCC-EEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC-ceEEEECCCCc
Confidence 555 4555556765888866533221111011 12357788888888876654 34 47777776543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00016 Score=71.86 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=121.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCC--cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecC
Q 004410 285 GSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSS 362 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 362 (755)
.-...+.|++ +.+..+.+.+| .|+++|+.+++.+..+......
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------------------------- 65 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------------------------- 65 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence 3466899986 66777777754 8999999999877655432110
Q ss_pred CceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC
Q 004410 363 DLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN 442 (755)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~ 442 (755)
---.++...+......-.++.+.+||..+.+.+..+.....=..++ + ++.
T Consensus 66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~ 115 (243)
T 3mbr_X 66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS 115 (243)
T ss_dssp ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence 0012333322233445578999999999999999997554434444 5 556
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEeccC---C---cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-eccc
Q 004410 443 YFISGSIDGKVRIWEVRRCQVVDYTDI---R---EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQGK 515 (755)
Q Consensus 443 ~l~sgs~Dg~V~iwdl~~~~~~~~~~~---~---~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~~~ 515 (755)
.|+.+..+++|.++|..+.+++..... . ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+... +...
T Consensus 116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 666656688999999999877642222 1 234556654 6665544446889999999999988765432 1111
Q ss_pred c----cCCCCCeEEEEEcCCCCCEEEEE
Q 004410 516 K----KLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 516 ~----~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
. .....-.+++++.|...+++++|
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 12334679999999444444444
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00027 Score=71.18 Aligned_cols=209 Identities=10% Similarity=0.132 Sum_probs=136.0
Q ss_pred EecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 383 EFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 383 ~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.+.+-...+..|+|.|++ ++++...++.|...|+. ++.++.+. .....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 344555689999999976 44557778899999998 88888774 335788899987 7777677667788999988
Q ss_pred CCCe---EEEec-------cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec--ccccCCCCCeEEE
Q 004410 459 RRCQ---VVDYT-------DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ--GKKKLPGKRITGF 526 (755)
Q Consensus 459 ~~~~---~~~~~-------~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~--~~~~~~~~~I~~v 526 (755)
.... .+... ........++|+|+++.|+++.......+|.+..........+... -........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6543 12111 1234468999999998888887766666666542100001111000 0011234567899
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeecc------CCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRV------AGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
+++|..+.+++.......+.++|.............+. -.....++|.++|+..++ ++-+.++++.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99997777777777788888999775433222211111 125578999999985554 77776766653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.3e-05 Score=88.80 Aligned_cols=273 Identities=12% Similarity=0.036 Sum_probs=150.4
Q ss_pred ceeecC-CCCeeEEeeCCC-----------eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CC
Q 004410 240 SATLKP-GDHELTLGQRMR-----------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG 306 (755)
Q Consensus 240 ~~~~sp-dg~~lasgs~dg-----------~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg 306 (755)
++++.| ++++++.|+.+. .+.+||........ +.. .-..+.....++++.++|++++.|+. +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~~~--~~~~~~~~~~~~~~~~~g~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--RTV--TVTKHDMFCPGISMDGNGQIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--CEE--EECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe--Ccc--cCCCCCCccccccCCCCCCEEEeCCCCCC
Confidence 467777 888888887542 57888877654321 111 01123333345677889999999984 45
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.+.+||..+.+....-. +..
T Consensus 266 ~v~~yd~~t~~W~~~~~------------------------------------------------------------~~~ 285 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPD------------------------------------------------------------MQV 285 (656)
T ss_dssp CEEEEEGGGTEEEECCC------------------------------------------------------------CSS
T ss_pred ceEEecCcCCceeECCC------------------------------------------------------------CCc
Confidence 79999987664321100 000
Q ss_pred CCCCEEEEEEcCCC-eEEEEe-CC-----CcEEEEeCCCCeEEEEE-----ecCCcEEEEEEeeCCCCEEEEEeCCC---
Q 004410 387 HSSEVLDLSWSKNG-FLLSSS-AD-----KTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDG--- 451 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~s~s-~D-----g~V~iWdl~s~~~~~~~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg--- 451 (755)
.. .-..++..+++ .++.|+ .+ ..+.+||..+++....- .....-....+.. ++..++.|+.+|
T Consensus 286 ~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~ 363 (656)
T 1k3i_A 286 AR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVF 363 (656)
T ss_dssp CC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEE
T ss_pred cc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEE
Confidence 00 01234455566 666666 34 57999999988765531 0000000011112 455556665554
Q ss_pred ------cEEEEEcCCCeEEEecc-C---------CcceEEEEEcc-CCCeEEEEeCCC-----------cEEEEECCCCe
Q 004410 452 ------KVRIWEVRRCQVVDYTD-I---------REIVSAVCYCP-DGKGGIVGTMTG-----------NCRFYDIKDNQ 503 (755)
Q Consensus 452 ------~V~iwdl~~~~~~~~~~-~---------~~~V~~v~~sp-dg~~la~gs~dg-----------~I~iwD~~~~~ 503 (755)
.+.+||..+........ . ...-.++.|.. +++.+++|+.++ .|.+||..++.
T Consensus 364 ~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 364 QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp ECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC
T ss_pred EecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC
Confidence 46788887765332111 1 11234555544 778888887543 57788887765
Q ss_pred EeeeeeEEecccccCCCCC-eEEEEEcCCCCCEEEEEECC-----------CcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 504 LYQQNQICLQGKKKLPGKR-ITGFQFSPSDPSKVIVTSAD-----------SLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~-I~~v~fsp~d~~~l~s~s~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
-.... .. ..+..+ -.+++..| +++++++|+.+ ..+.+||..+..................+
T Consensus 444 W~~~~----~~--~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a 516 (656)
T 1k3i_A 444 NTVFA----SN--GLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSIS 516 (656)
T ss_dssp EEEEC----TT--CCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEE
T ss_pred eeEEc----cC--CCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHh
Confidence 43211 00 112222 23456667 78888888754 56889998764433222111111222345
Q ss_pred EEecCCCEEEEEeC
Q 004410 572 TFTSDGKHVVSPSE 585 (755)
Q Consensus 572 ~fspdg~~L~sgs~ 585 (755)
.+.+||+.++.|+.
T Consensus 517 ~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 517 LLLPDGRVFNGGGG 530 (656)
T ss_dssp EECTTSCEEEEECC
T ss_pred hcCCCcEEEecCCC
Confidence 56799999999985
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0018 Score=76.68 Aligned_cols=201 Identities=10% Similarity=0.027 Sum_probs=130.4
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 388 SSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 388 ~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
...|.++...+++.|..|+.++-|.+||..++...... .....|.++...+ ++.+ ..|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCcE
Confidence 35699999888888888888888999998765433211 1346789998876 5554 4577777899999988877
Q ss_pred EEecc---CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 464 VDYTD---IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 464 ~~~~~---~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
..+.. ....|.++...++|. |.+|+. +.|..||..+++...... ..........|.++...+ ++. |.+++
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~---~~~~~~~~~~i~~i~~d~-~g~-lWigt 512 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD---TSNSQLLENFVRSIAQDS-EGR-FWIGT 512 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC---TTTSSCSCSCEEEEEECT-TCC-EEEEE
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc---CcccccccceeEEEEEcC-CCC-EEEEE
Confidence 65432 346789998888775 666666 568999988765432110 000112246788888876 544 55566
Q ss_pred CCCcEEEEECCcceeeEEEeee-ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 541 ADSLVRVLCGENVVGKFKASAF-RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 541 ~Dg~I~iwd~~~~~~~~~~~~~-~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
.++-|..++............. -....|.++...++|.+.++.. +|-|..||..+++
T Consensus 513 ~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp SSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred cCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 6445777886543222111000 1234688899888998766554 6655888876654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00022 Score=81.34 Aligned_cols=188 Identities=12% Similarity=0.018 Sum_probs=114.3
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcE---------------------------------------EEEEEeeCCCCEEEEE
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYV---------------------------------------TSVAFNPVDDNYFISG 447 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V---------------------------------------~~i~fsp~d~~~l~sg 447 (755)
.++.|+.+|..+++.+-.+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998777532211 1345666 66777777
Q ss_pred eCC----------------CcEEEEEcCCCeEEE-ecc--CCc-------ceEEEEEc-cCC---CeEEEEeCCCcEEEE
Q 004410 448 SID----------------GKVRIWEVRRCQVVD-YTD--IRE-------IVSAVCYC-PDG---KGGIVGTMTGNCRFY 497 (755)
Q Consensus 448 s~D----------------g~V~iwdl~~~~~~~-~~~--~~~-------~V~~v~~s-pdg---~~la~gs~dg~I~iw 497 (755)
..+ +.|..+|..+++++- +.. +.. ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 379999999998872 221 111 11112222 567 467778999999999
Q ss_pred ECCCCeEeeeeeEEecc----ccc-CCC--------------------------CCeEEEEEcCCCCCEEEEEE------
Q 004410 498 DIKDNQLYQQNQICLQG----KKK-LPG--------------------------KRITGFQFSPSDPSKVIVTS------ 540 (755)
Q Consensus 498 D~~~~~~~~~~~~~~~~----~~~-~~~--------------------------~~I~~v~fsp~d~~~l~s~s------ 540 (755)
|..+++++......... ... ... ..-..++++| +..++++..
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~ 417 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMD 417 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEecccccee
Confidence 99999987654321000 000 000 0112345666 333433321
Q ss_pred ---------------------------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 541 ---------------------------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 541 ---------------------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
.+|.|..||..+.+...+... ..+...-.+...+.+|+.++.|+
T Consensus 418 ~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 418 WEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTS
T ss_pred eecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEEEECCCC
Confidence 346788888877666555421 11222112334677888899999
Q ss_pred cEEEEEcCCCCc
Q 004410 588 NIYIWNYSNQDK 599 (755)
Q Consensus 588 ~I~iWd~~~~~~ 599 (755)
.|+.||..+++.
T Consensus 495 ~l~A~D~~tG~~ 506 (599)
T 1w6s_A 495 YLKARDSDTGDL 506 (599)
T ss_dssp EEEEEETTTCCE
T ss_pred eEEEEECCCCCE
Confidence 999999999984
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00011 Score=76.78 Aligned_cols=261 Identities=12% Similarity=0.003 Sum_probs=145.0
Q ss_pred cceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 239 GSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 239 ~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
.++...++|.+.+ ++.+ |..++.. + ..+..... +...+....+. +..|..++.++.|..+|.. ++.
T Consensus 63 ~~~~~~~~g~l~v-~t~~--l~~~d~~-g-~~~~~~~~------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 63 CRPSIGKDGTIYF-GSDK--VYAINPD-G-TEKWRFDT------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp ECCEETTTTEECC-SSCE--EEEECCC-G-GGGGGSCC-----------CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred cceEEecCCcEEE-ecCc--EEEECCC-C-cEEEEEEC------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3456666666443 4444 7777742 2 22222111 11112223333 4567778888999999987 666
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
.............+.... ... .+.+..+..+..++.. . +.+..+..+...+.++...+
T Consensus 129 ~~~~~~~~~~~~~~~~~~--~g~---------------l~vgt~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSE--DGT---------------IYVGSNDNYLYAINPD-G----TEKWRFKTNDAITSAASIGK 186 (330)
T ss_dssp EEEEECSSCCCSCCEECT--TSC---------------EEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECT
T ss_pred EEEEcCCCceeeeeEEcC--CCE---------------EEEEcCCCEEEEECCC-C----CEeEEEecCCCceeeeEEcC
Confidence 555443322222111110 111 1222333445555443 1 12223333344566677777
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEE
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVC 477 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~ 477 (755)
++.|..++ +.|..+| .+++.+..+. ....+.++...+ ++ .+..++.++.|..+|...............+..+.
T Consensus 187 ~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPV 261 (330)
T ss_dssp TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccce
Confidence 77666666 8899999 6776665554 445677888876 55 45567778888888854444434443333344555
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 478 YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 478 ~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+.+++ .|.+++.+|.|..+|. +++...... .....+.++...+ ++ .|.+++.+|.+++.....
T Consensus 262 ~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--------~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 262 IGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--------TGSWIIATPVIDE-NG-TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--------CSSCCCSCCEECT-TC-CEEEECTTSCEEEEEC--
T ss_pred EcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--------cCCccccceEEcC-CC-EEEEEcCCCeEEEEeccc
Confidence 65555 6778888999999996 555543321 1233455566655 43 477789999999876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.004 Score=65.00 Aligned_cols=201 Identities=10% Similarity=-0.008 Sum_probs=125.4
Q ss_pred CCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCC----CeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGI----DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s----~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+..++|.+.+ .| ++-...+.|..+++.. ......+. .-.....|++.+.+++++++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999754 44 4445668999999876 22222232 22456889998745566666677889999999876
Q ss_pred eEEEec-cCCcceEEEEEccCCCeEEEEeCC--CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYT-DIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~-~~~~~V~~v~~spdg~~la~gs~d--g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+. ........++++|.+..|+.+... +.|..+++........ . ........++++.|.++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~----~----~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE----E----ECCCCCceEEEEeccCCEEEEE
Confidence 544332 233567899999976666655543 6888888865432210 0 1123467899999955555556
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-...+.|..+|.....................+++. .+..+++-...+.|..++..+++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 566789999997643222222111123345677775 45556666677889999976665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0011 Score=76.91 Aligned_cols=180 Identities=10% Similarity=0.102 Sum_probs=112.0
Q ss_pred EEEEcCCC-eEEEEeCCC-------------------cEEEEeCCCCeEEEEEe---cC-------CcEEEEEEeeCCCC
Q 004410 393 DLSWSKNG-FLLSSSADK-------------------TVRLWQVGIDRCLRVFS---HN-------NYVTSVAFNPVDDN 442 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg-------------------~V~iWdl~s~~~~~~~~---h~-------~~V~~i~fsp~d~~ 442 (755)
.+++.++. .++.++.++ .|..+|+.+++.+-.+. |. ..+....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 45677655 666666554 49999999999988875 22 2233333333 554
Q ss_pred ---EEEEEeCCCcEEEEEcCCCeEEEeccCC-------------cce------------------------EEEEEccCC
Q 004410 443 ---YFISGSIDGKVRIWEVRRCQVVDYTDIR-------------EIV------------------------SAVCYCPDG 482 (755)
Q Consensus 443 ---~l~sgs~Dg~V~iwdl~~~~~~~~~~~~-------------~~V------------------------~~v~~spdg 482 (755)
.++.++.+|.|+++|..+++++...... ..+ ..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 6889999999999999999887211100 000 126788876
Q ss_pred CeEEEEe------------------------------------CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 483 KGGIVGT------------------------------------MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 483 ~~la~gs------------------------------------~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
..+++.. .+|.|..||+.+++.+...... ......
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~---------~~~~~~ 463 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---------THWNGG 463 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---------SSCCCC
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC---------CCCcCc
Confidence 6665521 2378999999999987654321 112222
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-EEEEEe
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-HVVSPS 584 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~L~sgs 584 (755)
.+.. .+.++++++.|+.+++||..+.......... ....-.-+.+..+|+ |++.++
T Consensus 464 ~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~-~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 464 TLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ-SGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEEE
T ss_pred eeEe-CCCEEEEECCcccchhhhhhcChhheEecCC-CCcccCceEEEECCEEEEEEEe
Confidence 2333 5678889999999999999887666655322 111112234456776 455444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0021 Score=69.30 Aligned_cols=199 Identities=9% Similarity=-0.053 Sum_probs=128.4
Q ss_pred CCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..++|.+.+ .| ++-...+.|+.+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789999754 44 444567889999998776554443 234567889988556666776677889999987654332
Q ss_pred -eccCCcceEEEEEccCCCeEEEEeC-C-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 -YTDIREIVSAVCYCPDGKGGIVGTM-T-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 -~~~~~~~V~~v~~spdg~~la~gs~-d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..........|+++|.+..|+.... . +.|..+++........ . .......++++++|.++.++++-...
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 2233356789999997766665543 3 6788888875432211 0 11234578999998555566666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++ ..+..+++-...+.|..++..+++
T Consensus 268 ~~I~~~d~dG~~~~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 268 HVIERANLDGSHRKAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TEEEEECTTSCSCEEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCeeEEEE--ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 88999987643222222 222345677777 445556666677889888866665
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00059 Score=77.61 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=98.9
Q ss_pred cEEEEeCCCCeEEEEEecC---C-------cEEEEEEeeCCC---CEEEEEeCCCcEEEEEcCCCeEEEeccCCc-----
Q 004410 410 TVRLWQVGIDRCLRVFSHN---N-------YVTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIRE----- 471 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~---~-------~V~~i~fsp~d~---~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~----- 471 (755)
.|..+|..+++.+-.++.. . ...-+...+ ++ ..++.++.+|.|.++|..+++++.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999988777521 1 111122223 56 367788999999999999998773221111
Q ss_pred ---------ce--------------------------EEEEEccCCCeEEEEe---------------------------
Q 004410 472 ---------IV--------------------------SAVCYCPDGKGGIVGT--------------------------- 489 (755)
Q Consensus 472 ---------~V--------------------------~~v~~spdg~~la~gs--------------------------- 489 (755)
++ ..++|+|+..+|++.+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 11 2467888877777764
Q ss_pred ----------CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE
Q 004410 490 ----------MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 490 ----------~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
.+|.|..||+.+++.+...... ..+....+.. .+..+++++.|+.|+.+|..+.....+.
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---------~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---------FAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC---------CCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 2478999999999877654321 1111111122 4567888999999999999887776665
Q ss_pred eeeccCCceEEEEEecCCCEEE
Q 004410 560 SAFRVAGSQMFATFTSDGKHVV 581 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~ 581 (755)
... ....-.-+.+..+|+.++
T Consensus 502 ~~~-~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 502 KMP-SGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp ECS-SCCCSCCEEEEETTEEEE
T ss_pred eCC-CCcEeeeEEEEECCEEEE
Confidence 322 111111233556776444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00072 Score=70.21 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=121.6
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~ 465 (755)
.....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++..... .|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988 4444457889999998754 444555566799999999 888766654432 47777877777654
Q ss_pred eccC--CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEE-ec-ccccCCCCCeEEEEEcCCCCCE-EEEEE
Q 004410 466 YTDI--REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC-LQ-GKKKLPGKRITGFQFSPSDPSK-VIVTS 540 (755)
Q Consensus 466 ~~~~--~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~-~~-~~~~~~~~~I~~v~fsp~d~~~-l~s~s 540 (755)
+... ......++..+++..+++-..+|.|+++|..++......... +. ..........+.+ +| ++.. +++-.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEET
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeC
Confidence 3322 223345555555544444446889999998765321100000 00 0000111234555 77 5554 45555
Q ss_pred CCCcEEEEECCc-ce-eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 541 ADSLVRVLCGEN-VV-GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 541 ~Dg~I~iwd~~~-~~-~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
..+.|.+++... .. ..... .........++++++|+++++....+.|.+++..
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~--~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEI--FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEE--EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEEEeCCCCCCCccEE--EeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 678999999763 11 11111 1111345568899999988887778899999865
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0012 Score=72.28 Aligned_cols=206 Identities=10% Similarity=0.074 Sum_probs=114.8
Q ss_pred CCEEEEEEcCCCeEEEEeCCC-----cEEEEeCCCCeE-EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 389 SEVLDLSWSKNGFLLSSSADK-----TVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg-----~V~iWdl~s~~~-~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.....+++.+++.|+.+...+ .+...+...+.. ...+........++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 446788888888444444321 133333222111 11222334456788888566666666677889999998776
Q ss_pred E-EEec--cCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--CCeEeeeeeEEec-cc--------ccCCCCCeEEEE
Q 004410 463 V-VDYT--DIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK--DNQLYQQNQICLQ-GK--------KKLPGKRITGFQ 527 (755)
Q Consensus 463 ~-~~~~--~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~--~~~~~~~~~~~~~-~~--------~~~~~~~I~~v~ 527 (755)
. ..+. ........++|+|+|+.|+++. ..+.|+.++.. ++.+.....+.-. +. ..........++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 5 2221 1222345799999999666655 46789998865 3322111011000 00 001123467788
Q ss_pred E---------cCCCCCEEEEEECCCcEEEEECCcceeeEEEeee--------c------cCCceEEEEEe-cCCCEEEEE
Q 004410 528 F---------SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF--------R------VAGSQMFATFT-SDGKHVVSP 583 (755)
Q Consensus 528 f---------sp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--------~------~~~~v~~l~fs-pdg~~L~sg 583 (755)
+ .+ ++.++++-...+.|+.++.......+..... + .-.....++++ ++|.++++=
T Consensus 342 v~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 342 FVKNEAYAGEED-EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp EEECGGGTTSSC-CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEccccccccCC-CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence 8 44 6666666667788999985432222221100 0 11236789999 666666666
Q ss_pred eCCCcEEEEEcC
Q 004410 584 SEDSNIYIWNYS 595 (755)
Q Consensus 584 s~Dg~I~iWd~~ 595 (755)
...+.|+.++++
T Consensus 421 ~~n~rIr~i~~e 432 (433)
T 4hw6_A 421 CDNHRVRKIAPE 432 (433)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCEEEEEecC
Confidence 667778887764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0032 Score=66.73 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=127.3
Q ss_pred CCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..++|.+.+ .|+ +-...+.|+.+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347889999754 444 44567889999988766444443 334567899988556666776777899999988654333
Q ss_pred e-ccCCcceEEEEEccCCCeEEEEe-CC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 Y-TDIREIVSAVCYCPDGKGGIVGT-MT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~-~~~~~~V~~v~~spdg~~la~gs-~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ ...-.....++++|.+..|+... .. +.|..+++........ ........++++++|.++.++++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 2 23335678999999666655544 34 7788888875432211 011234578999998555555666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++ ..+..+++-...+.|..++..+++
T Consensus 225 ~~I~~~~~dG~~~~~~~--~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 225 HVIERANLDGSHRKAVI--SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TEEEEEETTSCSCEEEE--CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCceEEEE--eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 88999987643222222 222345567777 345555565567788888865554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=85.30 Aligned_cols=206 Identities=10% Similarity=0.069 Sum_probs=115.6
Q ss_pred EEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEe-CC-----CcEEEEEcCCC
Q 004410 392 LDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGS-ID-----GKVRIWEVRRC 461 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs-~D-----g~V~iwdl~~~ 461 (755)
.++++..++ .++.|+ .+..+.+||..+++....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+.
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence 346667777 666666 45689999998886654432 222223455566 889999988 44 56999999887
Q ss_pred eEEEecc-----CCcceEEEEEccCCCeEEEEeCCC---------cEEEEECCCCeEeeeeeEEeccc-ccCCCCCeEEE
Q 004410 462 QVVDYTD-----IREIVSAVCYCPDGKGGIVGTMTG---------NCRFYDIKDNQLYQQNQICLQGK-KKLPGKRITGF 526 (755)
Q Consensus 462 ~~~~~~~-----~~~~V~~v~~spdg~~la~gs~dg---------~I~iwD~~~~~~~~~~~~~~~~~-~~~~~~~I~~v 526 (755)
+-..... ....-....+..++..++.|+.+| .+..||..+..-........... .......-.++
T Consensus 325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 6554311 100000112234566666665554 46788888765432211100000 00011122445
Q ss_pred EEcCCCCCEEEEEECCC-----------cEEEEECCcceeeEEE-eeeccCCceEEEEEecCCCEEEEEeCC--------
Q 004410 527 QFSPSDPSKVIVTSADS-----------LVRVLCGENVVGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSED-------- 586 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg-----------~I~iwd~~~~~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~D-------- 586 (755)
.|...+++++++|+.++ .|.+||..+....... ........-.+++..|+|++++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 55444677888877532 5677776654332221 011122223455667899999999865
Q ss_pred ---CcEEEEEcCCCC
Q 004410 587 ---SNIYIWNYSNQD 598 (755)
Q Consensus 587 ---g~I~iWd~~~~~ 598 (755)
..+.+||..+.+
T Consensus 485 ~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred CcccceEEEcCCCCc
Confidence 468999987765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0012 Score=72.27 Aligned_cols=207 Identities=11% Similarity=0.130 Sum_probs=113.2
Q ss_pred CCEEEEEEcCCC-eEEEEeCC-C----cEEEEeCCCCeE-EEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLLSSSAD-K----TVRLWQVGIDRC-LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~D-g----~V~iWdl~s~~~-~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
.....|+|++++ .|+.+... + .+.+.+...... ...+........++++|.++.++++-..++.|..++..++
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 456788999988 46665542 1 233344322111 1223223445678899856666777667889999999887
Q ss_pred eEEEec--cCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCC--CeEeeeeeEEec-ccc--------cCCCCCeE-EE
Q 004410 462 QVVDYT--DIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKD--NQLYQQNQICLQ-GKK--------KLPGKRIT-GF 526 (755)
Q Consensus 462 ~~~~~~--~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~--~~~~~~~~~~~~-~~~--------~~~~~~I~-~v 526 (755)
....+. ........++|+|+|++|+++ ...+.|..++... +.+.....+.-. +.. ......-. .+
T Consensus 259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 653322 222457889999999966555 4567899987663 332111111000 000 00011223 45
Q ss_pred EEcC-------CCCCEEEEEECCCcEEEEECCcceeeEEEee----ec----------cCCceEEEEEecC-CCEEEEEe
Q 004410 527 QFSP-------SDPSKVIVTSADSLVRVLCGENVVGKFKASA----FR----------VAGSQMFATFTSD-GKHVVSPS 584 (755)
Q Consensus 527 ~fsp-------~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~----------~~~~v~~l~fspd-g~~L~sgs 584 (755)
++.+ .++.++++-...+.|+.++.......+.... .+ .-.....++++++ |.++++-.
T Consensus 339 ~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 418 (430)
T 3tc9_A 339 FVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR 418 (430)
T ss_dssp EEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC
Confidence 5532 1344555555667888888433222222210 00 0124688999995 55555555
Q ss_pred CCCcEEEEEcC
Q 004410 585 EDSNIYIWNYS 595 (755)
Q Consensus 585 ~Dg~I~iWd~~ 595 (755)
....|+.++++
T Consensus 419 ~n~rIr~i~~e 429 (430)
T 3tc9_A 419 ENRRIRKIGYE 429 (430)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCeEEEEccC
Confidence 66778887754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0039 Score=70.97 Aligned_cols=146 Identities=11% Similarity=0.055 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCeEEEec---cCC-------cceEEEEEc-cCCC---eEEEEeCCCcEEEEECCCCeEeeeeeEEec---
Q 004410 451 GKVRIWEVRRCQVVDYT---DIR-------EIVSAVCYC-PDGK---GGIVGTMTGNCRFYDIKDNQLYQQNQICLQ--- 513 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~---~~~-------~~V~~v~~s-pdg~---~la~gs~dg~I~iwD~~~~~~~~~~~~~~~--- 513 (755)
+.|..+|..+++.+-.. .+. ....-+... .+|+ .++.++.+|.++++|..+++++......-.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 58999999999987322 121 111112222 4674 778899999999999999998765432100
Q ss_pred --------cc------ccC--------CC------------CCeEEEEEcCCCCCEEEEEE-------------------
Q 004410 514 --------GK------KKL--------PG------------KRITGFQFSPSDPSKVIVTS------------------- 540 (755)
Q Consensus 514 --------~~------~~~--------~~------------~~I~~v~fsp~d~~~l~s~s------------------- 540 (755)
+. ... .. ..-..++++|..+.+++...
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00 000 00 00113566663333333221
Q ss_pred -------------CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 541 -------------ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 541 -------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
.+|.|..||..+.+...+.... .++........+.+++.++.||.|+.||.++++.
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2578889998887766655321 1222222233567888899999999999999983
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.87 E-value=0.012 Score=63.70 Aligned_cols=204 Identities=10% Similarity=-0.010 Sum_probs=129.6
Q ss_pred CCCCCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCC----eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 386 GHSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~----~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
.....+..|+|.+.+ .|. +-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999854 444 4456788999998752 2233333 44568899999856666677777889999999
Q ss_pred CCCeEEEec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 459 RRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 459 ~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
.......+. ........|+++|.+..|+.... .+.|...++........ . .......++|++.|.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 876554333 23455789999997666666553 36899999876433211 0 1122467899999855555
Q ss_pred EEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 536 VIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 536 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++-...+.|..+|.....................+++. .+.++++-...+.|..+|..+++
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 555566788999997653333222111223345567763 34455566667889999976665
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.028 Score=58.81 Aligned_cols=192 Identities=8% Similarity=0.045 Sum_probs=103.8
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc--CCCeEEE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV--RRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl--~~~~~~~ 465 (755)
.+..+.+.+++.++.++.++.|..- ...++.-... .....+..+++.| ++.+++.+...+.++-+|- .+-+.+.
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~~ 200 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPHN 200 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred CeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeECC
Confidence 3556666666644445556655332 1222221222 3456789999998 7777766644333444443 2333332
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcE
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I 545 (755)
......+..+.+.+++..+ +++.+|.+++.+...++....... . .......+..+.+.+ ++..+++ +.++.|
T Consensus 201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~---~-~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i 272 (327)
T 2xbg_A 201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLS---P-LRRNSVGFLDLAYRT-PNEVWLA-GGAGAL 272 (327)
T ss_dssp -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBC---T-TSSCCSCEEEEEESS-SSCEEEE-ESTTCE
T ss_pred -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccC---C-cccCCcceEEEEecC-CCEEEEE-eCCCeE
Confidence 2345678899999988755 455678877765333433221110 0 001224588999987 5555555 456766
Q ss_pred EEEECCcceeeEEEeee--ccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 546 RVLCGENVVGKFKASAF--RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 546 ~iwd~~~~~~~~~~~~~--~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+ ..... ........ .....+..+.|.+++ .++.++.+|.|+-++-
T Consensus 273 ~~-S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LC-SQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EE-ESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EE-eCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 33 22211 22221111 123567788887555 4667778898776653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0034 Score=63.10 Aligned_cols=203 Identities=10% Similarity=0.101 Sum_probs=125.3
Q ss_pred eccCcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEc
Q 004410 235 IDRHGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 235 ~~~~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv 313 (755)
.+....++++|++..|+ +...++.|...+.. .+.+..+. +.+ ....-.|++.+++.++++.-.++.+.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~----l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP----LDF-VKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE----CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe----cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34566699999877555 57778888888876 22222221 122 245778888899988777667788888887
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
.....+....... .++. ...+....-.
T Consensus 99 ~~~~~i~~~~~~~----------------------------------------------------~~~~-~~~~N~g~EG 125 (255)
T 3qqz_A 99 TPNSEVKILKKIK----------------------------------------------------IPLQ-ESPTNCGFEG 125 (255)
T ss_dssp CTTCCEEEEEEEE----------------------------------------------------CCCS-SCCCSSCCEE
T ss_pred CCCCeeeeeeeec----------------------------------------------------cccc-cccccCCcce
Confidence 6543211100000 0000 0123455788
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCC---CCeEEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 394 LSWSKNG-FLLSSSADKTVRLWQVG---IDRCLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 394 l~~s~~~-~L~s~s~Dg~V~iWdl~---s~~~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
|+|.+.+ .|+++.......||.+. ....+..+. +...+..++++|..+++++.......|.++|....
T Consensus 126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 9999988 66666655555555443 111222221 33457899999988888888888889999997755
Q ss_pred eEEEeccCC----------cceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 462 QVVDYTDIR----------EIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 462 ~~~~~~~~~----------~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
++...... .....|+|.++|+. .+.+..+.++.|.-
T Consensus 206 -~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 206 -VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp -EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred -EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 44322222 25789999999974 44476666666643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00062 Score=80.26 Aligned_cols=146 Identities=11% Similarity=0.096 Sum_probs=82.3
Q ss_pred EEEEcCCC-eEEEEeCC-----CcEEEEeCCCCeE--EEEE--ecCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcC
Q 004410 393 DLSWSKNG-FLLSSSAD-----KTVRLWQVGIDRC--LRVF--SHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVR 459 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~D-----g~V~iWdl~s~~~--~~~~--~h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~ 459 (755)
.++|+||+ .|+....| ..|+++++.+++. ..++ ........+.|+| |+++|+..+. ...|+++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 47899998 66666554 3688889887642 2333 2345677899999 8988876653 3468889998
Q ss_pred CC--eE--EEecc-CCcceEEEEEccCCCeEEEEeCC-----CcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEE
Q 004410 460 RC--QV--VDYTD-IREIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 460 ~~--~~--~~~~~-~~~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
++ +. ..+.. .......+.|+. |..|+..+.. ..|..+|+.+. .... . + +.. .....+..+.+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~-~-l-i~~---~~~~~l~~~~~ 376 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSH-V-L-VDH---SEDVFMESIAV 376 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCC-E-E-ECC---CSSEEEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccccee-e-E-ECC---CCCcEEEEEEE
Confidence 75 33 33322 233444454433 6666554443 25777777642 1110 0 0 000 01113455555
Q ss_pred cCCCCCEEEEEECCCcEEEE
Q 004410 529 SPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 529 sp~d~~~l~s~s~Dg~I~iw 548 (755)
. ++.++++...++..+||
T Consensus 377 ~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 377 R--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp C--SSEEEEEEEETTEEEEE
T ss_pred E--CCEEEEEEEeCCEEEEE
Confidence 4 44566677777765544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0063 Score=63.44 Aligned_cols=181 Identities=7% Similarity=-0.089 Sum_probs=115.6
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----CeEEEec-cCCcceEEEEEccC
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----CQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~----~~~~~~~-~~~~~V~~v~~spd 481 (755)
....|+..|+.+.+....+.....+..++|++.++.++++-...+.|..+++.. .....+. ..-.....+++.+.
T Consensus 8 ~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp CBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 346789999998877666666677899999984455566666678999999876 2222222 22245678999875
Q ss_pred CCeEEE-EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEEE
Q 004410 482 GKGGIV-GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la~-gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~~ 559 (755)
+..|+. -...+.|.++++........ . ........++++.|.++.++++.... +.|..++..........
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~----~----~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTL----F----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE----E----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEE----E----ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 555544 45678899999876543211 1 11234678999999444444444333 67888876543222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQ 597 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~ 597 (755)
...-.....+++++++..|+.+. ..+.|..+|++..
T Consensus 160 --~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 160 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 12334678999999877776655 5578999999754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0091 Score=65.79 Aligned_cols=207 Identities=8% Similarity=0.090 Sum_probs=119.0
Q ss_pred CCEEEEEE-------cCCC-eEEEEeCCC-------cEEEEeCCC-C--------eEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 389 SEVLDLSW-------SKNG-FLLSSSADK-------TVRLWQVGI-D--------RCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 389 ~~V~~l~~-------s~~~-~L~s~s~Dg-------~V~iWdl~s-~--------~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
.....|+| ++++ .|+.+...+ .|.+.+... + ..+..+. ....++++|.++.++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCeEE
Confidence 34677888 8888 566665543 266665333 1 2222333 335678899666677
Q ss_pred EEEeCCCcEEEEEcC-------CCeE--------------EEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECC--
Q 004410 445 ISGSIDGKVRIWEVR-------RCQV--------------VDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIK-- 500 (755)
Q Consensus 445 ~sgs~Dg~V~iwdl~-------~~~~--------------~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~-- 500 (755)
++-..++.|..+|+. ++.. +...........|+|+|+|+.|+++. ....|+.++..
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~ 342 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI 342 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence 777788889999997 4443 11122234568999999999766654 56678886543
Q ss_pred CCeEeeeeeEEec-ccc--------cCCCCCeE-EEEEcC------CCCCEEEEEECCCcEEEEECCcceeeEEEeee--
Q 004410 501 DNQLYQQNQICLQ-GKK--------KLPGKRIT-GFQFSP------SDPSKVIVTSADSLVRVLCGENVVGKFKASAF-- 562 (755)
Q Consensus 501 ~~~~~~~~~~~~~-~~~--------~~~~~~I~-~v~fsp------~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 562 (755)
.+.+.....+.-. +.. ...-.... .+.... .++.++++-...+.|+.++.......+.+...
T Consensus 343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~ 422 (496)
T 3kya_A 343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGAST 422 (496)
T ss_dssp TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTH
T ss_pred cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccc
Confidence 3332100000000 100 01112344 445531 25566666677889999985433333332100
Q ss_pred --------c----------cCCceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCC
Q 004410 563 --------R----------VAGSQMFATFTSD-GKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 --------~----------~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+ .-.....++++++ |.++++=.....|+.+++....
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 0 1123578899986 6666666677789988887654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0067 Score=64.26 Aligned_cols=197 Identities=8% Similarity=-0.071 Sum_probs=125.9
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cC
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DI 469 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~ 469 (755)
..|.+..++..|+.+ ....|+..++..............+..++|++.++.++++-...+.|..+++.......+. ..
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CcccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 345555554445444 3456888898877766666666678999999845555666667788999999876544332 22
Q ss_pred CcceEEEEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEE
Q 004410 470 REIVSAVCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRV 547 (755)
Q Consensus 470 ~~~V~~v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~i 547 (755)
......+++.+.+..| ++-...+.|.++++........ . ........++++.|.++.++++-... +.|..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----E----CTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE----E----eCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 2446788999855555 4445567899999876532211 1 11234578999999555555555555 78888
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
++.......... .........++|++++..|+.+. ..+.|..++++...
T Consensus 187 ~~~dG~~~~~~~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 187 SSMDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EETTSCSCEESC--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeCCCCCcEEEE--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 876643222211 12234568999998777666554 45779999987543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.01 Score=62.01 Aligned_cols=182 Identities=15% Similarity=0.229 Sum_probs=118.5
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCC----C---EEEEEe-C--CCcEEEEEc--CCCeEEEecc
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDD----N---YFISGS-I--DGKVRIWEV--RRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~----~---~l~sgs-~--Dg~V~iwdl--~~~~~~~~~~ 468 (755)
.++.....+.+.+||+ .++.+..+.. +.++.+..-| +- . ++++.. . +++|++|++ .++++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 6666677889999999 8888887754 6778888776 21 1 233333 3 578999977 4455444322
Q ss_pred ------CC-cceEEEEE--ccC-CC-eEEEEeCCCcEEEEECC---CC----eEeeeeeEEecccccCCCCCeEEEEEcC
Q 004410 469 ------IR-EIVSAVCY--CPD-GK-GGIVGTMTGNCRFYDIK---DN----QLYQQNQICLQGKKKLPGKRITGFQFSP 530 (755)
Q Consensus 469 ------~~-~~V~~v~~--spd-g~-~la~gs~dg~I~iwD~~---~~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp 530 (755)
.. ..+..+|+ +|. ++ ++++...+|.+..|++. .+ +++.++. -...+..++..+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---------lgsq~EgcvvDd 189 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---------MNSQTEGMAADD 189 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---------CSSCEEEEEEET
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---------CCCCcceEEEcC
Confidence 11 45677888 774 44 68888889999999883 23 2222221 134788899988
Q ss_pred CCCCEEEEEECCCcEEEEECCcc---eeeEEEee-ec-cCCceEEEEE--ecCCC-EEEEEe-CCCcEEEEEcC
Q 004410 531 SDPSKVIVTSADSLVRVLCGENV---VGKFKASA-FR-VAGSQMFATF--TSDGK-HVVSPS-EDSNIYIWNYS 595 (755)
Q Consensus 531 ~d~~~l~s~s~Dg~I~iwd~~~~---~~~~~~~~-~~-~~~~v~~l~f--spdg~-~L~sgs-~Dg~I~iWd~~ 595 (755)
....|+++-.+.-|..++.... ........ .+ ....+..+++ .++|+ ||++++ .++.+.+||..
T Consensus 190 -~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 -EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7789999999877777775421 11222111 12 2236777877 56666 677666 67799999986
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.61 E-value=0.013 Score=63.25 Aligned_cols=187 Identities=7% Similarity=-0.068 Sum_probs=120.4
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC----eEEE-eccCCcceEE
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC----QVVD-YTDIREIVSA 475 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~----~~~~-~~~~~~~V~~ 475 (755)
+|+.+ ....|+..++..............+..|+|++.++.++++-...+.|+.+++... .... ..........
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 44444 3478999999887766666677789999999845555556566788999998752 1222 2223456788
Q ss_pred EEEccCCCeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcc
Q 004410 476 VCYCPDGKGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENV 553 (755)
Q Consensus 476 v~~spdg~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~ 553 (755)
+++.+.+..| ++-...+.|.+.++......... ........++++.|.++.++++-.. .+.|...++...
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 9999854444 44456788999998865433211 1123457899999944444444323 378888887653
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
...... .........+++++++..|+.+. ..+.|..+|++...
T Consensus 236 ~~~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 236 DIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp SCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ccEEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 333222 22335678999998887777665 45789999987543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0073 Score=64.95 Aligned_cols=194 Identities=8% Similarity=-0.063 Sum_probs=123.8
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEecc-CCc
Q 004410 393 DLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTD-IRE 471 (755)
Q Consensus 393 ~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-~~~ 471 (755)
+.+..+..+|+.+ ....|+..++..............+..++|++.++.++++-...+.|+.+++.......+.. ...
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 4444444444444 34678889988777666666666789999998455566666677889999998776544322 223
Q ss_pred ceEEEEEccCCCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEE
Q 004410 472 IVSAVCYCPDGKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLC 549 (755)
Q Consensus 472 ~V~~v~~spdg~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd 549 (755)
....+++.+.+..|+ +-...+.|.++++........ + ........++++.|.++.++++-... +.|..++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l----~----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe----e----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 456788988655554 445567888888875432211 1 11234678999999555555554445 7788888
Q ss_pred CCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCC
Q 004410 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQ 597 (755)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~ 597 (755)
.......... .........++|+|++..|+.+. ..+.|..++++..
T Consensus 232 ~dG~~~~~~~--~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEE--CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEE--ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 7643333222 22334568999998777666554 4577999998754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.52 E-value=0.022 Score=59.43 Aligned_cols=198 Identities=6% Similarity=-0.020 Sum_probs=126.5
Q ss_pred CEEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCeEE-EEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 390 EVLDLSWSKN-G-FLLSSSADKTVRLWQVGIDRCL-RVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 390 ~V~~l~~s~~-~-~L~s~s~Dg~V~iWdl~s~~~~-~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
.+..+.|.+. + .+++-...+.|..+++...... ..+ ..-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4567899875 4 4445556788999998766321 122 2334567899987566666776677899999998654332
Q ss_pred e-ccCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 Y-TDIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~-~~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ .........+++.|.+..|+.... .+.|..+++........ .. ......++++++|.++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~~----~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----IN----SEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE----EC----SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE----EE----CCCCCccEEEEeccCCEEEEEECCC
Confidence 2 234456789999997666666553 57888888875432110 00 1124568999999555555666667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++. .+.++++-...+.|..++..+++
T Consensus 188 ~~I~~~d~dG~~~~~~~--~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV--KGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TEEEEEETTSCSCEEEE--CSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEEe--cCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence 88999987643222222 2233455677775 33455555567889999987776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0027 Score=74.74 Aligned_cols=194 Identities=10% Similarity=0.045 Sum_probs=107.3
Q ss_pred CEEEEEEc-CCC-eEEEEe-CCC----cEEEEeCCCC-eEEEE-EecCCcEEEEEEeeCCCCEEEEEeCC-----CcEEE
Q 004410 390 EVLDLSWS-KNG-FLLSSS-ADK----TVRLWQVGID-RCLRV-FSHNNYVTSVAFNPVDDNYFISGSID-----GKVRI 455 (755)
Q Consensus 390 ~V~~l~~s-~~~-~L~s~s-~Dg----~V~iWdl~s~-~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~i 455 (755)
.+...+|| ||| +|+.+. .+| +|+++|+.++ +.+.. +. .....+.|+| |++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 57789999 999 555443 333 4999999988 63211 11 1134678999 88777766665 36888
Q ss_pred EEcCCCe----EEEeccCCcceEEEEEccCCCeEEEEeCC---CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEE
Q 004410 456 WEVRRCQ----VVDYTDIREIVSAVCYCPDGKGGIVGTMT---GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 456 wdl~~~~----~~~~~~~~~~V~~v~~spdg~~la~gs~d---g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
+++.+++ ++...........+.|+|||++|+....+ ..|+++|+.++....... .+. .........+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~-~l~---~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE-IVR---PREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE-ESS---CCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE-Eee---cCCCCceEEEee
Confidence 8887753 22222223446788999999998876633 358888988652100000 011 112234455555
Q ss_pred cCCCCCEEEEEECC--C--cEEEEECCcc-eeeEEEeeeccCC--ceEEEEEecCCCEEEEEeCCCc--EEEEEc
Q 004410 529 SPSDPSKVIVTSAD--S--LVRVLCGENV-VGKFKASAFRVAG--SQMFATFTSDGKHVVSPSEDSN--IYIWNY 594 (755)
Q Consensus 529 sp~d~~~l~s~s~D--g--~I~iwd~~~~-~~~~~~~~~~~~~--~v~~l~fspdg~~L~sgs~Dg~--I~iWd~ 594 (755)
+. ++.+++.+..+ + .|.+++..+. ...... ..+.. .+..+.+. .+.++++...|+. |+++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--VDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--ECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--ECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 43 44444454443 2 5666665532 111101 22222 34444444 2344566677776 455554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.039 Score=64.79 Aligned_cols=205 Identities=10% Similarity=-0.019 Sum_probs=127.7
Q ss_pred ecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----eEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGID----RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~----~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
+......+..|+|.+.+ .+++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667889998854 4445556688999988753 2233333 445678899998455677777778899999
Q ss_pred EcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCC
Q 004410 457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533 (755)
Q Consensus 457 dl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~ 533 (755)
++.......+. ........|++.|.+..|+.... .+.|...++......... ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv--------~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--------eCCCCCceEEEEecCCC
Confidence 99876654433 23345889999997666666553 267999998765432211 11235688999998555
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE-EeCCCcEEEEEcCCCC
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS-PSEDSNIYIWNYSNQD 598 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s-gs~Dg~I~iWd~~~~~ 598 (755)
.++++-...+.|..+++....................|++. +.+|+. -...+.|...|..+++
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 55555556678999987654333332111122344566663 334444 4456778888877765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.016 Score=60.02 Aligned_cols=202 Identities=8% Similarity=0.056 Sum_probs=127.0
Q ss_pred CCCEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEE-Eec-------CCcEEEEEE---eeCCCCEEEEEeC-----
Q 004410 388 SSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRV-FSH-------NNYVTSVAF---NPVDDNYFISGSI----- 449 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~-~~h-------~~~V~~i~f---sp~d~~~l~sgs~----- 449 (755)
..---++.|.+.. .|+.++ ..++|..||...+..... +.. ...+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 3344568998755 666666 789999999986654444 222 113689999 68 6777775432
Q ss_pred --------CCcEEEEEcC---CCeEEEeccC--------------CcceEEEEEccCCCeEEEEeCC-CcEEEEECCCCe
Q 004410 450 --------DGKVRIWEVR---RCQVVDYTDI--------------REIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQ 503 (755)
Q Consensus 450 --------Dg~V~iwdl~---~~~~~~~~~~--------------~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~~~ 503 (755)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999999 6665532221 1247899999999999999988 888888887653
Q ss_pred EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee-eEEEeeec---cCCceEE-EEEecCCC
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG-KFKASAFR---VAGSQMF-ATFTSDGK 578 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~---~~~~v~~-l~fspdg~ 578 (755)
.. .+. +...........++++++| ++..|++....+.+..+|+..... .+.....+ ....... +..-.+|+
T Consensus 171 ~~-~~~--~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 171 VS-TFA--WESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp EE-EEE--ECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred Ee-eee--ecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 32 111 1111122234578999999 788777776699999999885432 11110001 1112233 33335777
Q ss_pred E-EEEEeCCCcEEEEEc
Q 004410 579 H-VVSPSEDSNIYIWNY 594 (755)
Q Consensus 579 ~-L~sgs~Dg~I~iWd~ 594 (755)
. |++....+.+.+.+-
T Consensus 247 vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEEETTEEEEEECS
T ss_pred EEEEEcCCCCEEEEECC
Confidence 7 555556655555543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.011 Score=67.38 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 450 Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
+|.|..||+.+++.+-.......+..-.....+..+++|+.||.++.||.++++.+..++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 578999999999887333222222222222356788889999999999999999887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.084 Score=57.51 Aligned_cols=155 Identities=8% Similarity=0.004 Sum_probs=96.4
Q ss_pred CCEEEEEEcCC---CeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC---C-cEEEEEcCCC
Q 004410 389 SEVLDLSWSKN---GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID---G-KVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~---~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D---g-~V~iwdl~~~ 461 (755)
.....|+|.++ +.|+.+...+.|+.+|+.++..............|++++ +++++++.... . .+...+....
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 34568999985 566666655899999998888777666666799999999 88855554321 1 1333333221
Q ss_pred eE-EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC-EEEE
Q 004410 462 QV-VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS-KVIV 538 (755)
Q Consensus 462 ~~-~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~-~l~s 538 (755)
.. ............++++| +|.+.++-..++.|+.+|..++....... ..+ ....-..++|+| +++ ++++
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~--~~~----~~~~~~~ia~dp-dG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV--MMD----TKGSNFHIVWHP-TGDWAYII 290 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE--ECS----CCSSCEEEEECT-TSSEEEEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe--ccC----CCCCcccEEEeC-CCCEEEEE
Confidence 11 00111223456688999 66555555567889999998776522111 011 112335799999 666 4555
Q ss_pred EECCCcEEEEECC
Q 004410 539 TSADSLVRVLCGE 551 (755)
Q Consensus 539 ~s~Dg~I~iwd~~ 551 (755)
-...+.|+.++..
T Consensus 291 d~~~~~I~~~~~d 303 (433)
T 4hw6_A 291 YNGKHCIYRVDYN 303 (433)
T ss_dssp ETTTTEEEEEEBC
T ss_pred eCCCCEEEEEeCC
Confidence 5567889998754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.40 E-value=0.29 Score=59.99 Aligned_cols=315 Identities=12% Similarity=0.107 Sum_probs=154.4
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC------CCEEEEEcC-CCcEEEEEccCCeeee
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD------GQYLASGGE-DGTVRVWKVIEHERLD 320 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd------g~~LaSgs~-Dg~I~vWdv~~~~~~~ 320 (755)
.+++.+. .+.+.++++.... +... .. ..-...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+.
T Consensus 524 ~~vvva~-g~~l~~fel~~~~--L~~~---~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQE--LRQI---SH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTE--EEEE---EE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCc--eeee---cc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 3555554 5667776654321 1111 11 112457999999863 379999996 9999999998766554
Q ss_pred eeecCC-CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe--CCcceeccCccceEecCCCCCEEEEEEc
Q 004410 321 GFDVQD-TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL--PPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
...... ..+..+.+. ... .......+-.++.++.+ +.....+.... ..+.| ..++.-..+.
T Consensus 597 ~~~L~~~~~p~si~l~----------~~~----~~~~L~igl~dG~l~~~~~d~~tg~l~d~r-~~~LG-~~pv~L~~~~ 660 (1158)
T 3ei3_A 597 KEMLGGEIIPRSILMT----------TFE----SSHYLLCALGDGALFYFGLNIETGLLSDRK-KVTLG-TQPTVLRTFR 660 (1158)
T ss_dssp EEECCSSCCEEEEEEE----------EET----TEEEEEEEETTSEEEEEEECTTTCCEEEEE-EEECC-SSCCEEEEEE
T ss_pred EEECCCCCCCcEEEEE----------EeC----CCcEEEEEeCCCeEEEEEEcCCCCccccce-eEEcC-CCceEEEEEe
Confidence 433322 112222211 111 01222233333333222 22111111111 11222 2233333333
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCC-CCEEEEEeCCCcEEEEEcCCCe--EEEeccCCcc
Q 004410 398 KNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVD-DNYFISGSIDGKVRIWEVRRCQ--VVDYTDIREI 472 (755)
Q Consensus 398 ~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d-~~~l~sgs~Dg~V~iwdl~~~~--~~~~~~~~~~ 472 (755)
..+ .+++.+ ++...++--...-....+....--....|+... .+-++..+ ++.++|..+.+-+ .+........
T Consensus 661 ~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~T 738 (1158)
T 3ei3_A 661 SLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYES 738 (1158)
T ss_dssp SSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSE
T ss_pred eCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCC
Confidence 333 333333 344444433322111111122112233343311 23455443 5669998875432 2344556778
Q ss_pred eEEEEEccCCCeEEEEeCC-------------------------------------------------CcEEEEECCCCe
Q 004410 473 VSAVCYCPDGKGGIVGTMT-------------------------------------------------GNCRFYDIKDNQ 503 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~d-------------------------------------------------g~I~iwD~~~~~ 503 (755)
+..++++|+.+.+++++.+ +.|+++|..+.+
T Consensus 739 prri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 739 PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 9999999988877665532 124445544444
Q ss_pred EeeeeeEEecccccCCCCCeEEEE---EcCCCCCEEEEEE----------CCCcEEEEECCcceeeEEEeeeccCCceEE
Q 004410 504 LYQQNQICLQGKKKLPGKRITGFQ---FSPSDPSKVIVTS----------ADSLVRVLCGENVVGKFKASAFRVAGSQMF 570 (755)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~I~~v~---fsp~d~~~l~s~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~ 570 (755)
.+..+. + .....+.+++ |......++++|+ ..|.|.+|+..+...++... ....+.+++
T Consensus 819 ~i~~~~--l-----~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g~v~a 890 (1158)
T 3ei3_A 819 VLHAHQ--F-----LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKGAVYS 890 (1158)
T ss_dssp EEEEEE--C-----CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESSCEEE
T ss_pred EEEEEe--C-----CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCCcCEE
Confidence 332211 1 1223344444 3332356888886 35789999986443333322 345678888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 571 l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++-- +|+ |++|- ...|++|++...+
T Consensus 891 l~~~-~g~-Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 891 MVEF-NGK-LLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEE-TTE-EEEEE-TTEEEEEEECTTS
T ss_pred Eeee-CCE-EEEEc-CCEEEEEECCCCc
Confidence 7743 454 44443 3699999997654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.055 Score=56.45 Aligned_cols=117 Identities=15% Similarity=0.273 Sum_probs=82.7
Q ss_pred CEEEEEE--cCC-C--eEEEEeCCCcEEEEeC-------CCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 390 EVLDLSW--SKN-G--FLLSSSADKTVRLWQV-------GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 390 ~V~~l~~--s~~-~--~L~s~s~Dg~V~iWdl-------~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
.+..+++ ++. + +++....+|.+..|++ .+.+.++.|.....+..+.+.+ ....|+.+-.+.-|..++
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEEe
Confidence 3445665 553 4 6778888899999988 2446778888888899999998 788889999887777777
Q ss_pred cC-----CCeEEEecc---CCcceEEEEE--ccCCC-eEEEEe-CCCcEEEEECC-CCeEeee
Q 004410 458 VR-----RCQVVDYTD---IREIVSAVCY--CPDGK-GGIVGT-MTGNCRFYDIK-DNQLYQQ 507 (755)
Q Consensus 458 l~-----~~~~~~~~~---~~~~V~~v~~--spdg~-~la~gs-~dg~I~iwD~~-~~~~~~~ 507 (755)
.+ +.+++.... ....+..|++ .++++ +|++.+ .+.+..+||.. +.+.+..
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 55 345554432 2346788877 55666 566666 56789999997 5554443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0063 Score=66.46 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=102.0
Q ss_pred CcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC-C----cEEEEECCCC
Q 004410 429 NYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT-G----NCRFYDIKDN 502 (755)
Q Consensus 429 ~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d-g----~I~iwD~~~~ 502 (755)
.....|+++|. ++. |+.+...+.|+.+|+..+.+..+.........|+|+++|+.|+++... + .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 34677899872 344 444444488999999988877666666678999999999977766642 2 24444433 2
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
....... +. ......+++++|.++.++++-..++.|..++........... .........++|+|+|++|+.
T Consensus 215 ~~~~~~~--l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITE--LT-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEE--EE-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECTTSSEEEE
T ss_pred ceeeeee--ec-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcCCCCEEEE
Confidence 2211101 11 123456788999666666666678899999987644322111 222245678999999995554
Q ss_pred E-eCCCcEEEEEcCC
Q 004410 583 P-SEDSNIYIWNYSN 596 (755)
Q Consensus 583 g-s~Dg~I~iWd~~~ 596 (755)
+ ...+.|+.++.+.
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 4 5677899988764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.032 Score=65.57 Aligned_cols=183 Identities=7% Similarity=-0.091 Sum_probs=118.0
Q ss_pred eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EE-EeccCCcceEEEEEcc
Q 004410 406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VV-DYTDIREIVSAVCYCP 480 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~-~~~~~~~~V~~v~~sp 480 (755)
+....|+..++..............+..|+|++.++.++++-...+.|+.+++.... .. ...........|++.+
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345678888888777666666677889999998555566666667889999987531 12 2222344567899998
Q ss_pred CCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEE
Q 004410 481 DGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFK 558 (755)
Q Consensus 481 dg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~ 558 (755)
.+..|+.+ ...+.|.+.++......... ........+|++.|..+.++++-... +.|.+.++........
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~--------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEE--------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 77655554 45678999999865432211 11234578999999444444444333 6788888765433332
Q ss_pred EeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 559 ASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 559 ~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
. .........|++++.+..|+.+. ..+.|...+++...
T Consensus 553 v--~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 553 V--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred E--eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 2 22335678999998777776664 45679999987654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.01 Score=67.60 Aligned_cols=198 Identities=14% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCeEEEEEecCCc------------EEEEEEeeCCCCE----EEEEeCCCcEEEEEcCC
Q 004410 399 NGFLLSSSA-DKTVRLWQV-GIDRCLRVFSHNNY------------VTSVAFNPVDDNY----FISGSIDGKVRIWEVRR 460 (755)
Q Consensus 399 ~~~L~s~s~-Dg~V~iWdl-~s~~~~~~~~h~~~------------V~~i~fsp~d~~~----l~sgs~Dg~V~iwdl~~ 460 (755)
++.++.++. ++.|.-+|. .+++.+-.+..... ...+++.| .+.. ++.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 456777777 899999999 89999877753221 12345544 3344 78888999999999999
Q ss_pred CeEEEeccCCc-----ceEE-EEEccCCCeEEEEe------CCCcEEEEECCCCeEeeeeeEEecccc------------
Q 004410 461 CQVVDYTDIRE-----IVSA-VCYCPDGKGGIVGT------MTGNCRFYDIKDNQLYQQNQICLQGKK------------ 516 (755)
Q Consensus 461 ~~~~~~~~~~~-----~V~~-v~~spdg~~la~gs------~dg~I~iwD~~~~~~~~~~~~~~~~~~------------ 516 (755)
++++-...... .+++ ..+ .++ .+++++ .+|.|+-||..+++++...........
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98873222211 1211 111 144 556655 379999999999998765442111000
Q ss_pred -----------------cCCCCCe-EEEEEcCCCCCEEEEEECC----------------CcEEEEECCcceeeEEEeee
Q 004410 517 -----------------KLPGKRI-TGFQFSPSDPSKVIVTSAD----------------SLVRVLCGENVVGKFKASAF 562 (755)
Q Consensus 517 -----------------~~~~~~I-~~v~fsp~d~~~l~s~s~D----------------g~I~iwd~~~~~~~~~~~~~ 562 (755)
......+ ..+++.+ ...+|+.+..+ +.|..+|..+..........
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0000011 1345556 55677776655 37888999887777766544
Q ss_pred ccCC-------ceEEEEEe-cCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 004410 563 RVAG-------SQMFATFT-SDG---KHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 563 ~~~~-------~v~~l~fs-pdg---~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.|.. ...-+... .+| +.|+.++.+|.|+++|..+++.+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 4321 11112332 578 56788999999999999999843
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.17 E-value=0.85 Score=55.87 Aligned_cols=176 Identities=11% Similarity=0.167 Sum_probs=110.1
Q ss_pred cEEEEeCCCCeEEEEEe--cCCcEEEEEEee---CCCCEEEEEe----------CCCcEEEEEcCCCeEE--EeccCCcc
Q 004410 410 TVRLWQVGIDRCLRVFS--HNNYVTSVAFNP---VDDNYFISGS----------IDGKVRIWEVRRCQVV--DYTDIREI 472 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp---~d~~~l~sgs----------~Dg~V~iwdl~~~~~~--~~~~~~~~ 472 (755)
.|++.|..+.+.+..+. ....+.+++... ....+|+.|+ ..|.|++|++..+++. .....++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 47777877777766664 455566666433 1247888887 3478999999755443 45556788
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 473 VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
+++++-- +| +|++|- ..+|++|++...+.+. .... .. ..-.+..+.. .++++++|..-..|.++....
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~----~~-~~i~~~~l~~---~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECN----HY-NNIMALYLKT---KGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEE----EC-CCSCEEEEEE---ETTEEEEEESSBCEEEEEEET
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEee----cc-ccEEEEEEec---cCCEEEEEEhhheEEEEEEEc
Confidence 9988743 45 455543 5789999998765333 1110 00 0001223333 457888988887777765433
Q ss_pred ceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 553 VVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 553 ~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....+... .......++++.|-.+ ..++.+..+|+|.+...+...
T Consensus 956 ~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 956 MEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp TTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTC
T ss_pred CCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCC
Confidence 22222221 1335567888888755 478889999999999987643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.014 Score=60.33 Aligned_cols=167 Identities=7% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccC-------CcceEEEEE---ccCCCeEEEEeC-----
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDI-------REIVSAVCY---CPDGKGGIVGTM----- 490 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~-------~~~V~~v~~---spdg~~la~gs~----- 490 (755)
...+..++.|++.++.++++.-..++|..||...+..... ... ...+..|.| .|+++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 4455678899984444444444799999999986654433 111 114689999 688777776442
Q ss_pred --------CCcEEEEECC---CCeEeeeeeEEecccccC-------CCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECC
Q 004410 491 --------TGNCRFYDIK---DNQLYQQNQICLQGKKKL-------PGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGE 551 (755)
Q Consensus 491 --------dg~I~iwD~~---~~~~~~~~~~~~~~~~~~-------~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~ 551 (755)
+..|..||+. +++.+.... +...... .......++..+ +++..++++.. +.|..++..
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d--L~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVN--FEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEE--SHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEec--CccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 5779999999 776654322 1111100 113478999999 88888888887 888777765
Q ss_pred cceee-EEEee--eccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 552 NVVGK-FKASA--FRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 552 ~~~~~-~~~~~--~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
..... +.... .......+.++++|+|+.|++...+|.|..+|+..
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 43211 11110 11122356899999999999887799999999884
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.10 E-value=0.033 Score=57.98 Aligned_cols=181 Identities=8% Similarity=-0.080 Sum_probs=112.1
Q ss_pred CCCcEEEEeCCCCe--EEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE--EEeccCCcceEEEEEccCC
Q 004410 407 ADKTVRLWQVGIDR--CLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV--VDYTDIREIVSAVCYCPDG 482 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~--~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~--~~~~~~~~~V~~v~~spdg 482 (755)
....|+..++.... ....+.....+..++|++.++.++++-...+.|..+++..... ......-.....+++.+.+
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 35678899987663 2223333345778999985566666666778899999877631 1111222346678998755
Q ss_pred CeE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE--CCCcEEEEECCcceeeEEE
Q 004410 483 KGG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS--ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 483 ~~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s--~Dg~I~iwd~~~~~~~~~~ 559 (755)
..| ++-...+.|.++++........ . ........++++.| .+..|+.+. ..+.|...+..........
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVL----F----WQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE----E----CSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEE----E----eCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 544 4445567899999876432211 1 11234678999998 444444444 2577888876543222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
...-.....++|++++..|+.+. ..+.|..++++...
T Consensus 162 --~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 162 --NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 199 (318)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred --ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence 12234568999999777666654 56789999987543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.077 Score=56.02 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=41.2
Q ss_pred CcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC---CCEEEEEcC-C-----CcE
Q 004410 238 HGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD---GQYLASGGE-D-----GTV 308 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd---g~~LaSgs~-D-----g~I 308 (755)
...++|.|+|+++++ ...|+|++++ ......+..+. .+.........|+|+|+ +.+|..+.. . +.|
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~---v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS---VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce---EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345999999995554 5669999998 32211111111 11222456789999998 444444332 2 445
Q ss_pred EEEEcc
Q 004410 309 RVWKVI 314 (755)
Q Consensus 309 ~vWdv~ 314 (755)
..|+..
T Consensus 108 ~r~~~~ 113 (352)
T 2ism_A 108 VRLRHL 113 (352)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0013 Score=76.63 Aligned_cols=201 Identities=11% Similarity=-0.011 Sum_probs=120.4
Q ss_pred CCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCC----CeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC
Q 004410 389 SEVLDLSWSKNG-FLLSS-SADKTVRLWQVGI----DRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s----~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~ 461 (755)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898755 55444 4567899999875 22222221 22345678888645666666667789999999876
Q ss_pred eEEEecc-CCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 462 QVVDYTD-IREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 462 ~~~~~~~-~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
....+.. .......|+++|.+..|+.... .+.|..+++........ . .......++|+|+|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l----~----~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE----S----CSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE----E----eCCCCCccEEEEeccCCEEEEE
Confidence 6554433 2345678899997665555443 26788888765332110 0 0112356789999966667777
Q ss_pred EECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 539 TSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
-...+.|.+++.....................+++..+ .++++....+.|..++..+++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 77788999999764322222211111223345555443 444555566889999877665
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.75 Score=52.39 Aligned_cols=198 Identities=8% Similarity=-0.010 Sum_probs=117.8
Q ss_pred CCEEEEEEcCC-CeEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKN-GFLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~-~~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+.+|+|.+. +.|+ +-...+.|+.+++........+. .-.....+++.+..++++++-+..+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 45778999884 4444 44457889999987654433333 335678899987566677776777899999988664332
Q ss_pred ec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 YT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+. ..-.....|++.|....|..... .+.|...++........ . .......+++++.+..+.++++-+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL----V----NTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE----E----eCCCCCCeeeEEcccCCEEEEEECCC
Confidence 22 23456789999997445554442 35677777765432210 0 11235678999998455555555566
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... .........+++..+ +|+.+. ..+.|..-|..++.
T Consensus 501 ~~I~~~~~dG~~~~~~~--~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVLV--EDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TEEEEEESSSCCCEEEE--ECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred CEEEEEecCCCceEEEe--ccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 78888887543332221 111122234454433 444443 44567777766653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.32 Score=51.23 Aligned_cols=193 Identities=15% Similarity=0.050 Sum_probs=94.7
Q ss_pred CCCEEEEEEcCC----CeEEEEeC-C-----CcEEEEeCCCCeE------EEEEec----CCcEEEEEEeeCCCCEEEEE
Q 004410 388 SSEVLDLSWSKN----GFLLSSSA-D-----KTVRLWQVGIDRC------LRVFSH----NNYVTSVAFNPVDDNYFISG 447 (755)
Q Consensus 388 ~~~V~~l~~s~~----~~L~s~s~-D-----g~V~iWdl~s~~~------~~~~~h----~~~V~~i~fsp~d~~~l~sg 447 (755)
......|+++|+ +.|..+.. . ..|..|+...+.. +..+.. ......|+|.| ++.++++.
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~ 152 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT 152 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence 345788999997 44443332 2 5677888764321 111221 12346899999 88777764
Q ss_pred eC-------------CCcEEEEEcCCC--------------eEEEeccCCcceEEEEEcc-CCCeEEEEeCCCcE-----
Q 004410 448 SI-------------DGKVRIWEVRRC--------------QVVDYTDIREIVSAVCYCP-DGKGGIVGTMTGNC----- 494 (755)
Q Consensus 448 s~-------------Dg~V~iwdl~~~--------------~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I----- 494 (755)
+. .|+|.-++.... ..+...++ .....++|+| +|.++++-.....+
T Consensus 153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~ 231 (352)
T 2ism_A 153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGH 231 (352)
T ss_dssp CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CC
T ss_pred CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence 32 245666665431 01111122 2356789999 55544443322221
Q ss_pred -EEEECCCCeEee----eeeEE----eccc-ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE----EEe
Q 004410 495 -RFYDIKDNQLYQ----QNQIC----LQGK-KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF----KAS 560 (755)
Q Consensus 495 -~iwD~~~~~~~~----~~~~~----~~~~-~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~ 560 (755)
.|.-+..+...- ..... .... .-.+.....+++|. ++.++++....+.|...+.......+ ...
T Consensus 232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 122222222100 00000 0000 00122345677773 55666655566777777655332110 111
Q ss_pred eeccCCceEEEEEecCCCEEEEEe
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
.......+..+++.|||.++++..
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCeeEEEECCCCcEEEEEe
Confidence 122346788999999998776654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.5 Score=49.03 Aligned_cols=189 Identities=6% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEE-EEEcC-CCe
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVR-IWEVR-RCQ 462 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~-iwdl~-~~~ 462 (755)
..+.+|.+.+ +.++.++.++.|.. ....++.-.... +...+..|.+.+ ++..++.+ .+|.|. -.|-- +-+
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S~DgG~tW~ 155 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRTKDSGKNWQ 155 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEESSTTSSEE
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEEcCCCCCCE
Confidence 3467777775 43333455565544 222233222221 234577888876 66666555 456543 22211 112
Q ss_pred EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEE-EEC--CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRF-YDI--KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~i-wD~--~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
.+ .......+..+.+.+++.+++++. .|.+.. .|- .+.+.+. ......+..+.+.+ ++.. ++.
T Consensus 156 ~~-~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~----------~~~~~~~~~~~~~~-~g~~-~~~ 221 (327)
T 2xbg_A 156 AL-VQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN----------RTTSRRLHNMGFTP-DGRL-WMI 221 (327)
T ss_dssp EE-ECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE----------CCSSSCEEEEEECT-TSCE-EEE
T ss_pred Ee-ecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC----------CCCCCccceeEECC-CCCE-EEE
Confidence 22 223455788999999988777664 455443 332 1222210 12345788899988 5554 455
Q ss_pred ECCCcEEEEECCcceeeEEEeeec---cCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFR---VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~---~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.+|.+++.+.. .-..+...... ....+..+.+.+++..++++. +|.| ++..+.++
T Consensus 222 ~~~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 222 VNGGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp ETTTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred eCCceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 667887776321 11122111111 223578899998887666654 6766 44455554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.22 Score=52.47 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=40.5
Q ss_pred CCeEEEEEcCC------CCCEEEEEECCCcEEEEECCcceeeEEEeee-ccCCceEEEEEecCCCEEEEEe-CCCcE
Q 004410 521 KRITGFQFSPS------DPSKVIVTSADSLVRVLCGENVVGKFKASAF-RVAGSQMFATFTSDGKHVVSPS-EDSNI 589 (755)
Q Consensus 521 ~~I~~v~fsp~------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~v~~l~fspdg~~L~sgs-~Dg~I 589 (755)
.....+.|... ++.++++.-..+.|...+.......-..... .....+..+++.|||.++++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 35677888642 3556666666777877776543211111112 2235789999999998666543 34433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.4 Score=54.72 Aligned_cols=197 Identities=9% Similarity=-0.053 Sum_probs=127.7
Q ss_pred CCEEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 004410 389 SEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 389 ~~V~~l~~s~~~-~-L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~ 465 (755)
..+..|+|.+.+ . +++-..++.|+.+++........+. .......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457789999865 4 4455567889999987655444443 224578899987556666776677889999997654332
Q ss_pred ec-cCCcceEEEEEccCCCeEEEEeC--CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 YT-DIREIVSAVCYCPDGKGGIVGTM--TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 ~~-~~~~~V~~v~~spdg~~la~gs~--dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+. ..-.....|++.|....|+.... .+.|...++........ .. ......++++.+.++.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~~-----~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----VP-----NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----EC-----SCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----EC-----CCCCcceEEEccccCEEEEEECCC
Confidence 22 33355789999996556665553 56788888876543221 11 235678999999555555555667
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.|..++.......... ........+++.. +..+++-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 88999997654333222 2233456777754 4444454557889999877665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.29 Score=51.61 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=39.7
Q ss_pred CcceEEEEEc-------cCCCeEEEEeCCCcEEEEECCCC-eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 470 REIVSAVCYC-------PDGKGGIVGTMTGNCRFYDIKDN-QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 470 ~~~V~~v~~s-------pdg~~la~gs~dg~I~iwD~~~~-~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
......++|. .+|.++++....+.|..+++... .......+ +. .....+..+++.| ++.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~----~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-FK----NVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-CT----TTSCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-cc----CCCCCeeEEEECC-CCcEEEEEe
Confidence 3457788883 56766666666778888888753 22211111 11 1245789999999 676655553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=1.1 Score=51.01 Aligned_cols=183 Identities=7% Similarity=-0.062 Sum_probs=110.5
Q ss_pred eCCCcEEEEeCCCCeEEE-EE--ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCcceEEEEEccC
Q 004410 406 SADKTVRLWQVGIDRCLR-VF--SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~-~~--~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~~V~~v~~spd 481 (755)
+..+.|+..++....... .+ ..-..+..|+|.+.++.++++-...+.|+.+++.......+. ..-.....+++.+.
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 344567777776543211 12 234567899999855555566556788999998764333222 22345678999875
Q ss_pred CCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcceeeEEE
Q 004410 482 GKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~~~~~~~ 559 (755)
+..|+ +-+..+.|.+.++.+..... +. ........++++.|..+.++++-.. ...|...++.........
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~~-----l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~ 474 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRKI-----LI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV 474 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEE-----EE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEEE-----EE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE
Confidence 55554 44557789999987653211 11 1123567899999944554444322 356666665432222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~~~ 598 (755)
...-.....+++++++..|+.+.. .+.|...+++...
T Consensus 475 --~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 475 --NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred --eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 223456788999987777776654 4679999986544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=1.2 Score=50.78 Aligned_cols=340 Identities=7% Similarity=-0.080 Sum_probs=177.9
Q ss_pred CcceeecCCCCeeEEe-eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 238 HGSATLKPGDHELTLG-QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 238 ~~~~~~spdg~~lasg-s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+++++++..|..+ ...+.|...++......+ +...-.....|++.. +.+.+|-...+.|...|..++
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v--------~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV--------IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCceEE--------eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 3458999987766655 456789999986543321 222223345777764 455566666788998887777
Q ss_pred eeeeeeecCCCCCceeEEeeCCC--------------CceeEEee--------cCcc-ee-eeeeeeecCCceEEEe-CC
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHL--------------SQLIPIDV--------DKEK-ID-KTKSLRKSSDLTCVVL-PP 371 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~--------~~~~-~~-~~~~~~~~~~~~~~~~-~~ 371 (755)
+....+......+..+....... ..+..... .... +. ....... ....+++. ..
T Consensus 239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~-~~~~Ll~s~~~ 317 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA-PTTFLLFSQKS 317 (628)
T ss_dssp CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC-CSSEEEEEETT
T ss_pred CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc-ccceeeeeccc
Confidence 65544443322222222111100 00110000 0000 00 0000000 00000000 00
Q ss_pred cceecc--Cc--cceEec-CCCCCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEe
Q 004410 372 KVFRLL--EK--PLHEFQ-GHSSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFN 437 (755)
Q Consensus 372 ~~~~~~--~~--~~~~~~-gh~~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fs 437 (755)
.+..+. .. +...+. .....+..|+|.+.+ .|+.+ ...+.|+.+++........+. ....+..|++.
T Consensus 318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 111110 00 001111 123457889998855 44444 456788888876544333332 23468899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEEEe-ccCCcceEEEEEcc-CCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEec
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDY-TDIREIVSAVCYCP-DGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~~~~~V~~v~~sp-dg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~ 513 (755)
...++++++-+..+.|.+.++.......+ ........+|++.| .|..+++-.... .|...++........ .
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l----~- 472 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVL----F- 472 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEE----E-
T ss_pred ccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEE----E-
Confidence 84566667777788999999876543322 22345689999999 555555533332 577777764432211 0
Q ss_pred ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.......+++++.+..++++++-+..+.|...+.......... .........+++.. +..+.+=.....|...|
T Consensus 473 ---~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~--~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 473 ---FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE--DSNILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred ---eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEE--cCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 1123467899999844444455555688999987543322222 12234456777654 44444444566788888
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
..+++
T Consensus 547 k~~G~ 551 (628)
T 4a0p_A 547 MTGRE 551 (628)
T ss_dssp TTSSS
T ss_pred CcCCC
Confidence 77665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.37 Score=50.76 Aligned_cols=192 Identities=12% Similarity=0.037 Sum_probs=97.0
Q ss_pred CCEEEEEEcCC----CeEEEEeC----C----CcEEEEeCCCC-------eEE-EEEe--cCCcEEEEEEeeCCCCEEEE
Q 004410 389 SEVLDLSWSKN----GFLLSSSA----D----KTVRLWQVGID-------RCL-RVFS--HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 389 ~~V~~l~~s~~----~~L~s~s~----D----g~V~iWdl~s~-------~~~-~~~~--h~~~V~~i~fsp~d~~~l~s 446 (755)
.....|+++|+ +.|..+.. + ..|..|+.... +.+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45778999987 44443332 3 56777776544 111 1122 122356799999 8887776
Q ss_pred EeC-------------CCcEEEEEcCCC---------eEEEeccCCcceEEEEEcc-CCCeEEEEeCCC---cEEEEECC
Q 004410 447 GSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCP-DGKGGIVGTMTG---NCRFYDIK 500 (755)
Q Consensus 447 gs~-------------Dg~V~iwdl~~~---------~~~~~~~~~~~V~~v~~sp-dg~~la~gs~dg---~I~iwD~~ 500 (755)
.+. .|+|.-++.... ..+...++. ....++|+| +|.++++-...+ .|.+..
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~-- 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL-- 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence 432 245655555432 111122222 345789999 555444422221 133322
Q ss_pred CCeEee----eeeEE----eccccc--CCCCCeEEEEEcC------CCCCEEEEEECCCcEEEEECCcceee--EEEeee
Q 004410 501 DNQLYQ----QNQIC----LQGKKK--LPGKRITGFQFSP------SDPSKVIVTSADSLVRVLCGENVVGK--FKASAF 562 (755)
Q Consensus 501 ~~~~~~----~~~~~----~~~~~~--~~~~~I~~v~fsp------~d~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~ 562 (755)
.+...- ..... ...... ........++|.. -++.++++....+.|...+....... ......
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 308 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK 308 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence 221000 00000 000000 1234678888842 15566666666778888887642111 111111
Q ss_pred ccCCceEEEEEecCCCEEEEEe
Q 004410 563 RVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs 584 (755)
.....+..+++.|||.++++..
T Consensus 309 ~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 309 NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCeeEEEECCCCcEEEEEe
Confidence 2245788999999998776664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.041 Score=60.58 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=102.5
Q ss_pred cEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCeEEEeccCC----cceEEEEE-------ccCCCeEEEEeCCC-----
Q 004410 430 YVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQVVDYTDIR----EIVSAVCY-------CPDGKGGIVGTMTG----- 492 (755)
Q Consensus 430 ~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~----~~V~~v~~-------spdg~~la~gs~dg----- 492 (755)
....|+|+|. .++++++-...+.|++.|+.++.+..+.... .....|+| +++|..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4556666555578999999998887654332 35899999 99999777776654
Q ss_pred --cEEEEECCC-CeEee-e-eeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC-------ccee-----
Q 004410 493 --NCRFYDIKD-NQLYQ-Q-NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE-------NVVG----- 555 (755)
Q Consensus 493 --~I~iwD~~~-~~~~~-~-~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~-------~~~~----- 555 (755)
.|.+++... +.... . ... +. ......+++++|.++.++++-..++.|..+|.. +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~-v~-----~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQL-IA-----AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEE-EE-----EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CceEEEEecCCCCceeeccccee-ec-----cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 266666443 22210 0 000 11 012445778899667777777788889999986 2221
Q ss_pred -e----E-EEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q 004410 556 -K----F-KASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSN 596 (755)
Q Consensus 556 -~----~-~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~ 596 (755)
. + .............++|+|+|++|+.+ .....|+.++++.
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 0 1 11112233456899999999965544 4567788877643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.85 Score=49.75 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=23.1
Q ss_pred ccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 285 GSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 285 ~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
...+.|+|.|||+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 35679999999998887654456777765433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.94 Score=47.56 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=39.2
Q ss_pred cceEEEEEcc-------CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 471 EIVSAVCYCP-------DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 471 ~~V~~v~~sp-------dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
..+..+.|.. +|.++++....+.|...++..++......+ + .....++..+++.| ++.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~----~~~~~rp~~v~~~p-dG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI-L----TDRGQRIRDVRTGP-DGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE-S----GGGCCCEEEEEECT-TSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc-c----cCCCCceeEEEECC-CCcEEEEE
Confidence 3566777753 466666666777888888876644322111 1 11235789999999 77655543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=1.2 Score=47.52 Aligned_cols=263 Identities=8% Similarity=0.104 Sum_probs=164.8
Q ss_pred CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEee
Q 004410 257 RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTI 336 (755)
Q Consensus 257 g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~ 336 (755)
..|.|-|+........ +.+.+ -+.-.+|..+.||-=. ..++.|+|+++...+..+...
T Consensus 48 ~~vvIiDl~~~~~~~r-----rpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~----------- 105 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIR-----RPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------- 105 (494)
T ss_dssp CEEEEEETTSTTSCEE-----EECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-----------
T ss_pred CeEEEEECCCCCccee-----ccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-----------
Confidence 3677777765433211 11111 1234677777776654 678999999988766554322
Q ss_pred CCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeC
Q 004410 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416 (755)
Q Consensus 337 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl 416 (755)
.+|.-=.|-.+..|+..+ +..|+-|++
T Consensus 106 ----------------------------------------------------e~VvfWkWis~~~l~lVT-~taVyHWsi 132 (494)
T 1bpo_A 106 ----------------------------------------------------DDVTFWKWISLNTVALVT-DNAVYHWSM 132 (494)
T ss_dssp ----------------------------------------------------SCCCEEEEEETTEEEEEC-SSEEEEEES
T ss_pred ----------------------------------------------------CCceEEEecCCCeEEEEc-CCeeEEecc
Confidence 123334455444444333 467889998
Q ss_pred CC-CeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEe-------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccC--
Q 004410 417 GI-DRCLRVFS-----HNNYVTSVAFNPVDDNYFISGS-------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD-- 481 (755)
Q Consensus 417 ~s-~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs-------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spd-- 481 (755)
.. ..+.+.|. ....|.....++ +.++++..+ ..|.+.+|..+.+....+.+|......+.+.-+
T Consensus 133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~ 211 (494)
T 1bpo_A 133 EGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE 211 (494)
T ss_dssp SSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSS
T ss_pred cCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCC
Confidence 63 45666774 345677777787 777766543 247889999998877777777665544444221
Q ss_pred -CCeEEEEeCC---CcEEEEECCCC----eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc
Q 004410 482 -GKGGIVGTMT---GNCRFYDIKDN----QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV 553 (755)
Q Consensus 482 -g~~la~gs~d---g~I~iwD~~~~----~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~ 553 (755)
.+.++.+... +.++|.++... .........+.-.......--.+++.++ ....+..-+.-|.|++||+.+.
T Consensus 212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC
T ss_pred CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccc
Confidence 1234444433 78999998543 1111111112111223344566788888 7788999999999999999999
Q ss_pred eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 554 VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 554 ~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
...+... -....|...+-.....=++.....|.|.--.++...
T Consensus 291 t~i~~nr--Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 291 TCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CEEEEEE--CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeeeec--ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 8888873 345566666666666667777788888888887665
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.9 Score=47.69 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=107.8
Q ss_pred EEEEEEcCCCeEEEEe-------------CCCcEEEEeCCC--CeEEEEEe--------cCCcEEEEEEeeC-CCC--EE
Q 004410 391 VLDLSWSKNGFLLSSS-------------ADKTVRLWQVGI--DRCLRVFS--------HNNYVTSVAFNPV-DDN--YF 444 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s-------------~Dg~V~iWdl~s--~~~~~~~~--------h~~~V~~i~fsp~-d~~--~l 444 (755)
.-+++..++|.+++++ .+|.|.++|..+ .+. ..+. ..-....|.+.+. ++. ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 4466678888555554 689999999873 232 2222 1236778888662 232 44
Q ss_pred EEEeC--CCcEEEEEcCC--CeEEE---ecc-CCcceEEEEEccCCCeEEEEeC-----------------CCcEEEEEC
Q 004410 445 ISGSI--DGKVRIWEVRR--CQVVD---YTD-IREIVSAVCYCPDGKGGIVGTM-----------------TGNCRFYDI 499 (755)
Q Consensus 445 ~sgs~--Dg~V~iwdl~~--~~~~~---~~~-~~~~V~~v~~spdg~~la~gs~-----------------dg~I~iwD~ 499 (755)
++-.. +..|.+|++.. +.... ..+ .-...+.+.+.++|...++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 45777877654 33221 211 1235789999999987666541 244555555
Q ss_pred CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEECCcc--eeeEEEeeeccCCceEEEEEec-
Q 004410 500 KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLCGENV--VGKFKASAFRVAGSQMFATFTS- 575 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg~I~iwd~~~~--~~~~~~~~~~~~~~v~~l~fsp- 575 (755)
..-+.+ ..+ -..-++++|+| |++.++++ +..+.|..|+.... ...... ....+..-.+++.+
T Consensus 211 ~~~~~~------~~~-----l~~pNGia~sp-Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~--~~~~g~PDGi~vD~e 276 (355)
T 3sre_A 211 NDVRVV------AEG-----FDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRV--LSFDTLVDNISVDPV 276 (355)
T ss_dssp TCCEEE------EEE-----ESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEE--EECSSEEEEEEECTT
T ss_pred CeEEEe------ecC-----CcccCcceECC-CCCEEEEEeCCCCeEEEEEECCCCcEecCEE--EeCCCCCceEEEeCC
Confidence 321111 111 13568999999 66655554 56789999997531 111111 22345667888998
Q ss_pred CCCEEEEEeCC-CcEEEE
Q 004410 576 DGKHVVSPSED-SNIYIW 592 (755)
Q Consensus 576 dg~~L~sgs~D-g~I~iW 592 (755)
+|.+.+++..+ +.|..|
T Consensus 277 ~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp TCCEEEEEESCHHHHHSC
T ss_pred CCcEEEEecCCceEEEEE
Confidence 59888877644 334444
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.17 Score=53.96 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=93.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC---eEEEecc--CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee--------
Q 004410 440 DDNYFISGSIDGKVRIWEVRRC---QVVDYTD--IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-------- 506 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~---~~~~~~~--~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~-------- 506 (755)
++.-++.+- ++.||.-++... +.+.... .-..|..+..+|+|++||+.+ +..|.|..+..+....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444433 467777776632 2333332 123578899999999999976 5589998887332111
Q ss_pred --eeeEEecccccCCCCCeEEEEEcCCC--CCEEEEEECCCcEEEEECCcceeeEE-E-------eeeccCCceEEEEEe
Q 004410 507 --QNQICLQGKKKLPGKRITGFQFSPSD--PSKVIVTSADSLVRVLCGENVVGKFK-A-------SAFRVAGSQMFATFT 574 (755)
Q Consensus 507 --~~~~~~~~~~~~~~~~I~~v~fsp~d--~~~l~s~s~Dg~I~iwd~~~~~~~~~-~-------~~~~~~~~v~~l~fs 574 (755)
.....+.........+|..+.|||-. +..|++-..|+.|++||+........ . ........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11122222111235789999999953 45899999999999999875211100 0 001122578899999
Q ss_pred cCCCEEEEEe--CCCcEEEE
Q 004410 575 SDGKHVVSPS--EDSNIYIW 592 (755)
Q Consensus 575 pdg~~L~sgs--~Dg~I~iW 592 (755)
+++-.|...+ ..|-|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77887754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0046 Score=72.05 Aligned_cols=181 Identities=8% Similarity=-0.088 Sum_probs=107.2
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----CeEEEec-cCCcceEEEEEccC
Q 004410 407 ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----CQVVDYT-DIREIVSAVCYCPD 481 (755)
Q Consensus 407 ~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~----~~~~~~~-~~~~~V~~v~~spd 481 (755)
..+.|+..++.+.+....+.....+..|+|++..+.++++-...+.|+.+++.. .....+. ........|++.+.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 346788888888776655555566788999983444444445568899999875 2222221 11233567888865
Q ss_pred CCeEE-EEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-CcEEEEECCcceeeEEE
Q 004410 482 GKGGI-VGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-SLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la-~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-g~I~iwd~~~~~~~~~~ 559 (755)
+..|+ +-...+.|.++++......... ........++++.|.++.++++-... +.|.++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~--------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC--------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE--------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 54444 4455678999998865433211 11123456788988445444443333 67887776543222211
Q ss_pred eeeccCCceEEEEEecCCCEEEE-EeCCCcEEEEEcCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVS-PSEDSNIYIWNYSNQ 597 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~s-gs~Dg~I~iWd~~~~ 597 (755)
.........|+|+|++..|+. -+..+.|.++++...
T Consensus 536 --~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp --CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred --eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 112234568999987655544 455678999998753
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=1.3 Score=45.42 Aligned_cols=174 Identities=8% Similarity=-0.015 Sum_probs=91.5
Q ss_pred EEEEeCCCCeEEEEEecCCcE--EEEEEeeCCCCEEEEEeCC--------CcEEEEEcCCCeEEEeccCCcc--eEEEEE
Q 004410 411 VRLWQVGIDRCLRVFSHNNYV--TSVAFNPVDDNYFISGSID--------GKVRIWEVRRCQVVDYTDIREI--VSAVCY 478 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~h~~~V--~~i~fsp~d~~~l~sgs~D--------g~V~iwdl~~~~~~~~~~~~~~--V~~v~~ 478 (755)
+.+||..+++....-.....- .+++.. ++.+++.|+.+ ..+.+||+.+.+-......... -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778898887754332211111 112222 56777777743 4589999988765543322211 11222
Q ss_pred ccCCCeEEEEeC-C-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC-----cEEE
Q 004410 479 CPDGKGGIVGTM-T-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS-----LVRV 547 (755)
Q Consensus 479 spdg~~la~gs~-d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg-----~I~i 547 (755)
..+++.++.|+. + ..+.+||+.+..-..... .......-..+.+ ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP------MQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC------CCCchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence 246677777776 2 458999998876433211 1111112222333 557777777654 4778
Q ss_pred EECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC--------------cEEEEEcCCCC
Q 004410 548 LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS--------------NIYIWNYSNQD 598 (755)
Q Consensus 548 wd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg--------------~I~iWd~~~~~ 598 (755)
||..+..-............ .+++ .-++++++.|+.++ .|.+||+.+.+
T Consensus 217 yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSS-LSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EECCCCeEEECCCCCCcccc-eeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 88776543333211111111 1222 23677777777642 36778876654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.10 E-value=1.7 Score=45.42 Aligned_cols=240 Identities=12% Similarity=0.015 Sum_probs=122.5
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
-..-+.|+|.|||++|++--..|.|++++..++... .+...
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-------------------------------------- 71 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-------------------------------------- 71 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC--------------------------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc--------------------------------------
Confidence 345789999999998888766888988875444321 00000
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC----CeEEEE---eCCCcEEEEeCCCC----------eEE-EEE
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN----GFLLSS---SADKTVRLWQVGID----------RCL-RVF 425 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~----~~L~s~---s~Dg~V~iWdl~s~----------~~~-~~~ 425 (755)
+ ..+.......+.|+++|+ +.|... ..+..|.-|.+..+ +.+ ..+
T Consensus 72 ----------------~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~ 134 (347)
T 3das_A 72 ----------------P-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI 134 (347)
T ss_dssp ----------------T-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE
T ss_pred ----------------C-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC
Confidence 0 001123456788999985 433332 23455666655431 111 112
Q ss_pred e--cCCcEEEEEEeeCCCCEEEEEeC-------------CCcEEEEEcCCC---------eEEEeccCCcceEEEEEccC
Q 004410 426 S--HNNYVTSVAFNPVDDNYFISGSI-------------DGKVRIWEVRRC---------QVVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 426 ~--h~~~V~~i~fsp~d~~~l~sgs~-------------Dg~V~iwdl~~~---------~~~~~~~~~~~V~~v~~spd 481 (755)
. ....-..|+|.| ++.++++.+. .|+|.-.+.... ..+.-.++. ....++|+|+
T Consensus 135 p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~ 212 (347)
T 3das_A 135 PKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDK 212 (347)
T ss_dssp CCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTT
T ss_pred CCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCC
Confidence 1 223456799999 8887777542 355555555432 112223333 3457899998
Q ss_pred CCeEEEEe-CCCcEEEEECCCCeEeeeeeEEe---------ccc--ccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEE
Q 004410 482 GKGGIVGT-MTGNCRFYDIKDNQLYQQNQICL---------QGK--KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLC 549 (755)
Q Consensus 482 g~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~---------~~~--~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd 549 (755)
|.+.++=. .++.-.|.-+..+...- ..... ... ...+......++|. ++.+++..-..+.|....
T Consensus 213 G~L~~~d~g~~~~deln~i~~G~nyG-wP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~ 289 (347)
T 3das_A 213 QRLFASEFGQDTWDELNAIKPGDNYG-WPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIP 289 (347)
T ss_dssp CCEEEEECCSSSCEEEEEECTTCBCC-TTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEE
T ss_pred CCEEEEecCCCCCceeeEEcCCCEec-CCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEE
Confidence 76555422 23323333333222110 00000 000 00011245677776 345555555556666555
Q ss_pred CCccee--eEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 550 GENVVG--KFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 550 ~~~~~~--~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
+..... ..........+.+..++..|||.++++..
T Consensus 290 ~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 290 LKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 443211 11111123346789999999997766654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.01 E-value=3.4 Score=48.13 Aligned_cols=194 Identities=10% Similarity=0.103 Sum_probs=116.6
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~ 467 (755)
..|.++.-..++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..+|..+++...+.
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 457888777778777777655 7899988775432111 2335777654 3 44 45556655 6888998877765441
Q ss_pred -----cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 468 -----DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 468 -----~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
.....|.++....+|.. .+|+.. -+..||..+++.... ............|.++...+ ++..|.+++.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQI-YVGTYN-GLCRYIPSNGKFEGI---PLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEEE---CCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCE-EEEeCC-CHhhCccCCCceEEe---cCCCccccccceeEEEEEEC-CCCEEEEEEC-
Confidence 12346888888777754 456654 578889887764321 11111111234578887766 5555555654
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+-+..++..+....... ......|.++....+|.+.+.. . +-|.+++..++.
T Consensus 211 ~Gl~~~~~~~~~~~~~~--~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTE--AFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEETTTTEEEEEE--EEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSC
T ss_pred CCCeEEcCCCCeEEecc--CCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCc
Confidence 45777886653222111 1123457888888888776654 4 468888876543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.12 Score=50.12 Aligned_cols=178 Identities=8% Similarity=-0.056 Sum_probs=100.7
Q ss_pred eEEEEeCCCcEEEEeCCCCe------EEEEEec--CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 401 FLLSSSADKTVRLWQVGIDR------CLRVFSH--NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~------~~~~~~h--~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
.|+....| +|+.=....+. ....+.. =..++.++|+| ++.+.++ .+|.|+-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 65555444443 2334433 24678999999 8887777 678877777655333333332223
Q ss_pred --------eEEEEEccCCCeEEEEeCCCcEEEEECCCCeEee--eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 473 --------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ--QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 473 --------V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~--~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..++.|.|+|.+.++ .||.|+-++-.+..... .....+ ....-..+..|.+.| ++.+.++. |
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v---g~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEe---ccCCCCceEEEEECC-CceEEEEe--C
Confidence 378999999988888 56988877753311100 000000 000114678999999 88877777 7
Q ss_pred CcEEEEECCcc-------eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 543 SLVRVLCGENV-------VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 543 g~I~iwd~~~~-------~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+.+.-...... ...... ...-.....+.|+++|.+.+.. +| +||....
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g--~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIG--QGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEE--SSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred CcEEecCCCCCCCcccccccceec--cCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 76543322210 011111 1222234456799998877766 66 4454433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=1.1 Score=45.34 Aligned_cols=133 Identities=10% Similarity=0.082 Sum_probs=74.1
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccCCc---ceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIRE---IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~~~---~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-........ ...++.+
T Consensus 128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 128 TSMERYDPNIDQWSMLGDMQTAREGAGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205 (301)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEcCCCCeEEECCCCCCCcccceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence 358889988876654432 1111122222 2 67788887765 458999998876554332222 1222222
Q ss_pred ccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 479 spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
+++.++.|+.+ ..+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..|.+|
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS------MTTPRCYVGATVL---RGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBEEEEEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC------CCCcccceeEEEE---CCEEEEEcCcCCCcccccEEEE
Confidence 66777777764 468999999876543211 1111112222333 55677777655 356777
Q ss_pred ECCcce
Q 004410 549 CGENVV 554 (755)
Q Consensus 549 d~~~~~ 554 (755)
|..+..
T Consensus 275 d~~~~~ 280 (301)
T 2vpj_A 275 DPIIDS 280 (301)
T ss_dssp ETTTTE
T ss_pred cCCCCe
Confidence 776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.47 Score=48.30 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=99.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~~ 468 (755)
.++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55566544 458899998887654432 1111122222 2 577888887664 57889988876554332
Q ss_pred CCc---ceEEEEEccCCCeEEEEeCC-------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 469 IRE---IVSAVCYCPDGKGGIVGTMT-------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 469 ~~~---~V~~v~~spdg~~la~gs~d-------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
... ...++. -+++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++.
T Consensus 142 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 142 MNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE------MSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEE
T ss_pred CCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC------CccccccccEEEE---CCEEEEE
Confidence 221 122222 266777776643 358899998876443211 1111111222333 5577777
Q ss_pred EECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCC
Q 004410 539 TSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS-----NIYIWNYSNQD 598 (755)
Q Consensus 539 ~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg-----~I~iWd~~~~~ 598 (755)
|+.+ ..+.+||..+..-............ ..++ .-++++++.|+.++ .|.+||+.+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 7654 4688899876543332211111111 1122 23677778877653 48888887664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.65 Score=47.17 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=99.5
Q ss_pred eEEEEeCC-----CcEEEEeCCCCe---EEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEE
Q 004410 401 FLLSSSAD-----KTVRLWQVGIDR---CLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVD 465 (755)
Q Consensus 401 ~L~s~s~D-----g~V~iWdl~s~~---~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~ 465 (755)
.++.|+.+ ..+.+||+.+.+ ....-. ....-.+++. - ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55666644 468999988776 433321 1111122222 2 567777777543 58899998876543
Q ss_pred eccCC---cceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 466 YTDIR---EIVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 466 ~~~~~---~~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
..... ....++.+ +++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP------MATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC------CCcccccceEEEE---CCEEEE
Confidence 32211 11222222 67777777754 458999998876543211 1111112222333 557777
Q ss_pred EEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 538 VTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 538 s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
.|+.+ ..+.+||..+..-............. .+ ..-++++++.|+.+ ..|.+||+.+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GA-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eE-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77664 46889998765443332111111111 22 22367777888765 357888887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.17 Score=53.93 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=95.3
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecC-----CcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe--------
Q 004410 397 SKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHN-----NYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ-------- 462 (755)
Q Consensus 397 s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~-----~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~-------- 462 (755)
+.+| .++.+ .++.||.-++.....-+.+... ..|..+..+| +|++|+..+ +..|.|..+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3444 44433 4588888888744444444332 2588899999 999998875 5689998887321
Q ss_pred -----EEEec--c----CCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEeccc-----ccCCCCCe
Q 004410 463 -----VVDYT--D----IREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK-----KKLPGKRI 523 (755)
Q Consensus 463 -----~~~~~--~----~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~-----~~~~~~~I 523 (755)
+..+. . ....|..+.|+| .+..|++-+.|+.|++||+........ .+... .......|
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceE
Confidence 11111 1 246799999999 467899999999999999986221111 11111 11233679
Q ss_pred EEEEEcCCCCCEEEEEE--CCCcEEEE
Q 004410 524 TGFQFSPSDPSKVIVTS--ADSLVRVL 548 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s--~Dg~I~iw 548 (755)
.+++|.+ ++-.|.+.+ ..|.|+-.
T Consensus 183 ~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9999999 777777755 77888653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.53 Score=49.03 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=57.6
Q ss_pred eCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEee--------CCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcc
Q 004410 406 SADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNP--------VDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 406 s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp--------~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~ 472 (755)
+.||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|++...|+.+++.+........
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988885554443 2222221 1001 0456889999999999999999998854433321
Q ss_pred e--------EEEEEc-----cCCCeEEEEeCCCcEEEEECCCCe
Q 004410 473 V--------SAVCYC-----PDGKGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 473 V--------~~v~~s-----pdg~~la~gs~dg~I~iwD~~~~~ 503 (755)
. .|.... -.+..|++|..+..+.+.+ ++++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence 1 111111 1245677777777777777 4454
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=2.3 Score=44.59 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCEEEEEEcCCCeEEEEeC------------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE-eC
Q 004410 389 SEVLDLSWSKNGFLLSSSA------------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SI 449 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~------------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~ 449 (755)
...+++.+.++|.+..+++ .+.|.-+|. +++......-...+.|+|+| +++.|+.+ +.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~sp-Dg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISP-DGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECT-TSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECC-CCCEEEEEeCC
Confidence 3567888888884433332 234555554 34333334446679999999 88766555 46
Q ss_pred CCcEEEEEcCC-CeEE--EeccCCcceEEEEEcc-CCCeEEEEeCC-CcEEEEECC
Q 004410 450 DGKVRIWEVRR-CQVV--DYTDIREIVSAVCYCP-DGKGGIVGTMT-GNCRFYDIK 500 (755)
Q Consensus 450 Dg~V~iwdl~~-~~~~--~~~~~~~~V~~v~~sp-dg~~la~gs~d-g~I~iwD~~ 500 (755)
.+.|..|++.. +.+. .........-.+++.+ +|.+.+++..+ +.|..|+..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 78899999863 3332 1223456678889988 58876655544 344445443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=1.6 Score=44.28 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=79.2
Q ss_pred eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeC---------CCcEEEEEcCCCeE
Q 004410 401 FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI---------DGKVRIWEVRRCQV 463 (755)
Q Consensus 401 ~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~---------Dg~V~iwdl~~~~~ 463 (755)
.++.|+.+ ..+.+||..+.+....-. ....-.+++. - ++.+++.|+. -..+.+||+.+.+-
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-A-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-E-CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 55555544 468899998887654432 1111122222 2 5677777764 34588999998865
Q ss_pred EEeccCCc---ceEEEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCE
Q 004410 464 VDYTDIRE---IVSAVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSK 535 (755)
Q Consensus 464 ~~~~~~~~---~V~~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~ 535 (755)
........ .-.++.+ +++.++.|+.+ ..+.+||+.+++-..... ..........+.+ ++.+
T Consensus 182 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i 250 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP------MPWKGVTVKCAAV---GSIV 250 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC------CSCCBSCCEEEEE---TTEE
T ss_pred EECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC------CCCCccceeEEEE---CCEE
Confidence 54432221 1222222 66777777654 358999998876433211 1111122233333 5577
Q ss_pred EEEEECC-----CcEEEEECCcceee
Q 004410 536 VIVTSAD-----SLVRVLCGENVVGK 556 (755)
Q Consensus 536 l~s~s~D-----g~I~iwd~~~~~~~ 556 (755)
++.|+.+ ..+.+||..+..-.
T Consensus 251 ~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 251 YVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 7777754 45778887764433
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.58 Score=47.68 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=100.0
Q ss_pred eEEEEeCC----CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCCeEEEecc
Q 004410 401 FLLSSSAD----KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 401 ~L~s~s~D----g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~~ 468 (755)
.++.|+.+ ..+.+||+.+++....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-.....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-A-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-E-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-E-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 55666644 678899998887654432 1111112222 2 67788888765 468999999876554332
Q ss_pred CCc---ceEEEEEccCCCeEEEEeC---------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 469 IRE---IVSAVCYCPDGKGGIVGTM---------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 469 ~~~---~V~~v~~spdg~~la~gs~---------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
... ...++. -+++.++.|+. -..+.+||+.+..-..... .......-..+.+ ++.++
T Consensus 136 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~ 204 (306)
T 3ii7_A 136 MLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP------MIEARKNHGLVFV---KDKIF 204 (306)
T ss_dssp CSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEE
T ss_pred CcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC------ccchhhcceEEEE---CCEEE
Confidence 221 122222 26677777654 3458899999876443211 1111111222222 45677
Q ss_pred EEEECC-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 537 IVTSAD-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+.|+.+ ..+.+||..+..-...............+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 776653 4578888776543322211111111222222 67788888754 458888887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.02 E-value=2.1 Score=43.72 Aligned_cols=174 Identities=11% Similarity=0.041 Sum_probs=89.3
Q ss_pred EEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-------CcEEEEEcCCCeEEEeccCCcce--EEEEEc
Q 004410 411 VRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-------GKVRIWEVRRCQVVDYTDIREIV--SAVCYC 479 (755)
Q Consensus 411 V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-------g~V~iwdl~~~~~~~~~~~~~~V--~~v~~s 479 (755)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.......... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 7788888776644322 11111122222 56777787764 24888999887655433322211 11222
Q ss_pred cCCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 480 PDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 480 pdg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
.+++.++.|+. -..+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP------MKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC------CCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEE
Confidence 46777777764 2359999999876443211 1111111222332 55777777654 346678
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC--------------CcEEEEEcCCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED--------------SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D--------------g~I~iWd~~~~~ 598 (755)
|..+..-............ .+++ .-++++++.|+.+ ..|.+||+.+.+
T Consensus 228 d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 228 DLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 8766433322211111111 1222 2366777777654 346777776554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.41 E-value=1.3 Score=48.33 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.9
Q ss_pred CCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE---ecc------CCcceEEEEEccC---CCeEEEEeC-----
Q 004410 428 NNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---YTD------IREIVSAVCYCPD---GKGGIVGTM----- 490 (755)
Q Consensus 428 ~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---~~~------~~~~V~~v~~spd---g~~la~gs~----- 490 (755)
-.....|+|.| +++++++-...+.|++++..++.... +.. .......|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 88877765444578888876554332 211 2355779999995 555655442
Q ss_pred --------CCcEEEEECCCC--eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 491 --------TGNCRFYDIKDN--QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 491 --------dg~I~iwD~~~~--~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
...|.-|++... .+.. .+..+........+....|+|.| ++.++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~-~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEK-PVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEE-EEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCC-cEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence 134665655432 2211 11111111112235678999999 7776666543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=1.6 Score=44.18 Aligned_cols=175 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEEcCCCeEEEeccCCc---ceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWEVRRCQVVDYTDIRE---IVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwdl~~~~~~~~~~~~~---~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.++ .+.+||..+.+-........ ...++.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458889988876544321 1111112222 2 677788887653 58899998876554332221 1222222
Q ss_pred ccCCCeEEEEeCCC-----cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-------CcEE
Q 004410 479 CPDGKGGIVGTMTG-----NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-------SLVR 546 (755)
Q Consensus 479 spdg~~la~gs~dg-----~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-------g~I~ 546 (755)
+++.++.|+.++ .+.+||+.+++-..... ..........+.+ ++.+++.|+.+ ..+.
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP------MNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC------CCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEE
Confidence 677778877654 48889998876543211 1111111222222 55666666542 4588
Q ss_pred EEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 547 VLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 547 iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+||..+..-............ .+++ .-++++++.|+.+ ..+.+||+.+.+
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSG-AGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCcEEECCCCcccccc-ccEE-EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 888876544333211111111 1222 2367777887765 368888887764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.99 E-value=7.8 Score=41.44 Aligned_cols=240 Identities=13% Similarity=0.211 Sum_probs=140.4
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecc--cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAH--EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE 317 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H--~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~ 317 (755)
++..+|..+.+|.-. ..++.|++++.+.+ +..| ...|.-=+|-.+ +.|+-.+ +..|.-|++....
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~k----------lks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s 136 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSK----------MKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES 136 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEE----------EEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhh----------hcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCC
Confidence 367889999888765 67899999886554 2222 235655667543 3555555 4579999996532
Q ss_pred -eeeeeecCC--CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 318 -RLDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 318 -~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
..+.+..+. .....+.+..+.......+. -+. ..++ .+.-....+....+.-+.+.||......+
T Consensus 137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~----------GI~-~~~~-~v~G~mQLYS~er~~sQ~ieGhaa~F~~~ 204 (494)
T 1bpo_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT----------GIS-AQQN-RVVGAMQLYSVDRKVSQPIEGHAASFAQF 204 (494)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSSEEEEE----------EEE-EETT-EEEEEEEEEESTTCCEEEECCSEEEEEEE
T ss_pred CchhheecchhcccceEEEEEECCCCCeEEEE----------eec-ccCC-cccceEEEeeccccccchheeeeeeeEEE
Confidence 222332221 12222333333322221111 010 0111 11111223333344556778887666555
Q ss_pred EEcCCC----eEEEEeCC---CcEEEEeCCCC---------eEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEE
Q 004410 395 SWSKNG----FLLSSSAD---KTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVR 454 (755)
Q Consensus 395 ~~s~~~----~L~s~s~D---g~V~iWdl~s~---------~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~ 454 (755)
....+. .++.+... +.++|-++... +....+ . ..+...++.+++ ....++.-+.-|.|.
T Consensus 205 ~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~ 283 (494)
T 1bpo_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIH 283 (494)
T ss_dssp ECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEE
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEE
Confidence 443222 33333332 78999998543 111111 1 467788999998 888899999999999
Q ss_pred EEEcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 455 IWEVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 455 iwdl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
+||+.++.++... -..+.|...+.+.....++.....|.|.-..+....++
T Consensus 284 lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 284 LYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 9999999988533 34556666666666677777778888877777766554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.92 E-value=1.4 Score=46.07 Aligned_cols=154 Identities=9% Similarity=0.006 Sum_probs=84.7
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-------ccCCcceEEEEEccC---CCeEEEE-e--CCCc
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-------TDIREIVSAVCYCPD---GKGGIVG-T--MTGN 493 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-------~~~~~~V~~v~~spd---g~~la~g-s--~dg~ 493 (755)
.-.....|+|.| ++++|++--..|.|++++..+++.... .........|+++|+ +..|.+. + .++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 888777765589999998765554321 122456789999995 3445443 2 3455
Q ss_pred EEEEECCCCe----EeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-------------CCcEEEEECCccee-
Q 004410 494 CRFYDIKDNQ----LYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA-------------DSLVRVLCGENVVG- 555 (755)
Q Consensus 494 I~iwD~~~~~----~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~-------------Dg~I~iwd~~~~~~- 555 (755)
|.-|.+..+. .....+.-+........+.-..|.|.| ++.++++.+. .|.|.-++......
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 6666665421 111111111111112233456799999 7776666542 24454444332100
Q ss_pred -----eEEEeeeccCCceEEEEEecCCCEEEEE
Q 004410 556 -----KFKASAFRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 556 -----~~~~~~~~~~~~v~~l~fspdg~~L~sg 583 (755)
.......++. ....++|+|+|.+.++=
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence 0011113333 34578898887765543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.90 E-value=3.3 Score=42.13 Aligned_cols=182 Identities=12% Similarity=0.062 Sum_probs=97.7
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeC----C-------CcEEEEEcCCCeEEEec
Q 004410 401 FLLSSSADKTVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSI----D-------GKVRIWEVRRCQVVDYT 467 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~----D-------g~V~iwdl~~~~~~~~~ 467 (755)
.++.|+ ..+.+||..+++....- .. ........... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 57999999988865421 11 12222222233 7788888874 1 12788999887755433
Q ss_pred cCCcc---eEEEEEccCCCeEEEEeCC--------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 468 DIREI---VSAVCYCPDGKGGIVGTMT--------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 468 ~~~~~---V~~v~~spdg~~la~gs~d--------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
..... ...+.+ +++.++.|+.+ ..+.+||+.+++-..... .......-..+.+ ++.++
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iy 152 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP------LPYVVYGHTVLSH---MDLVY 152 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC------CCCcccceeEEEE---CCEEE
Confidence 32222 122222 66677777642 358999998876432111 1111111222222 55677
Q ss_pred EEEEC-C-----CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC-----cEEEEEcCCCC
Q 004410 537 IVTSA-D-----SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS-----NIYIWNYSNQD 598 (755)
Q Consensus 537 ~s~s~-D-----g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg-----~I~iWd~~~~~ 598 (755)
+.|+. + ..+.+||..+..-....... ....-.+++ .-++++++.|+.++ .+.+||+.+.+
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 77765 2 46888887765433322111 111111222 23677888887654 48888887764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.29 Score=47.38 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=59.0
Q ss_pred EEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEE------EEe--cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLR------VFS--HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 391 V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~------~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
..++.|.++|.|..+ .||.|+-++-.+..... .+. .=..+..|.|.| ++.+.+.. |+.++-+......
T Consensus 90 F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCC
Confidence 457889999966666 66999888764322111 111 114679999999 88887777 7876554444322
Q ss_pred EEEe-------c-cCCcceEEEEEccCCCeEEEEeCCCcE
Q 004410 463 VVDY-------T-DIREIVSAVCYCPDGKGGIVGTMTGNC 494 (755)
Q Consensus 463 ~~~~-------~-~~~~~V~~v~~spdg~~la~gs~dg~I 494 (755)
...+ . ..-...+.+.|.++|...++. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 1111 1 122234556788888777776 6633
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.82 E-value=1.3 Score=45.07 Aligned_cols=175 Identities=11% Similarity=0.015 Sum_probs=93.8
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC-----CcEEEEEcCCCeEEEeccCC---cceEEEEE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID-----GKVRIWEVRRCQVVDYTDIR---EIVSAVCY 478 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D-----g~V~iwdl~~~~~~~~~~~~---~~V~~v~~ 478 (755)
..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-....... ....++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGV-I-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEE-E-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEE-E-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468899998876544322 1111112222 2 56777777644 36889999887655433222 11222333
Q ss_pred ccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----CcEEEE
Q 004410 479 CPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SLVRVL 548 (755)
Q Consensus 479 spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~I~iw 548 (755)
+++.++.|+.+ ..+.+||+.++.-..... ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA------MNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC------CCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 67777777654 458999998876443211 1111112223333 55677777654 568889
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
|..+..-............ .+++. -++++++.|+.+ ..|.+||+.+.+
T Consensus 237 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEECCCCCCCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 9876543322211111111 12222 367777777754 347778876654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.64 E-value=3.5 Score=50.60 Aligned_cols=204 Identities=8% Similarity=0.099 Sum_probs=112.8
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCC-CeEEEEEe-c----CCcEEEEEEeeCCCCEEEEEe-------CCCcEEEE
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS-H----NNYVTSVAFNPVDDNYFISGS-------IDGKVRIW 456 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s-~~~~~~~~-h----~~~V~~i~fsp~d~~~l~sgs-------~Dg~V~iw 456 (755)
+|.-=.|-....|+..+ +..|+.|++.. ..+.+.|. | +..|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 34445565555333333 35689999863 34555553 2 45566777777 777766543 35889999
Q ss_pred EcCCCeEEEeccCCcceEEEEEc--cC-CCeEEEEeC---CCcEEEEECCCC----eEeeeeeEEecccccCCCCCeEEE
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYC--PD-GKGGIVGTM---TGNCRFYDIKDN----QLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~s--pd-g~~la~gs~---dg~I~iwD~~~~----~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
..+.+....+.+|......+... +. .+.++.+.. .+.++|.++... .........+.-.......-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 98876655555555444333332 11 122332222 268999988543 111111111111011123334567
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.++ .-..+..-+.-|.|.++|+.+....+... -...+|...+-.....=++.....|.|.--.++...
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 7887 67788889999999999999987777652 233344433433333334444466666666655443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.048 Score=56.98 Aligned_cols=198 Identities=8% Similarity=0.063 Sum_probs=103.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEEecC--CcEEEEEEe--eCCCCEEEEE-eCCCcEEEEEcCCCeEEEeccCCcce
Q 004410 399 NGFLLSSSADKTVRLWQVGIDRCLRVFSHN--NYVTSVAFN--PVDDNYFISG-SIDGKVRIWEVRRCQVVDYTDIREIV 473 (755)
Q Consensus 399 ~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~--~~V~~i~fs--p~d~~~l~sg-s~Dg~V~iwdl~~~~~~~~~~~~~~V 473 (755)
++.++.++.||.|.-.|..+|+.+-.+... .++....-. +.++..++.. +.||.|..++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347889999999999999999999888643 222221100 1122333333 68999999999887544211111111
Q ss_pred E--EEEEc-----------cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE---EcC-CCCCEE
Q 004410 474 S--AVCYC-----------PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ---FSP-SDPSKV 536 (755)
Q Consensus 474 ~--~v~~s-----------pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~---fsp-~d~~~l 536 (755)
. -+... ..+..+++|+.+|++...|+.+|+.+........... .......+.. +.. ..+..|
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-FGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------------------CCEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc-ccccccccccccccccccCCCeE
Confidence 0 01110 1456788999999999999999999876432110000 0000000111 100 123466
Q ss_pred EEEECCCcEEEEECCcceeeEEEee--e-ccCC--ce-EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 537 IVTSADSLVRVLCGENVVGKFKASA--F-RVAG--SQ-MFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~~--~-~~~~--~v-~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
+.+..+..+.+.+ .+.. ...... . .... .+ ..-..+.|+.+ +.++.||.|+.+|..++...
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 6666666666554 2211 111000 0 0000 00 00001234666 45789999999999888743
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.81 E-value=2.4 Score=44.03 Aligned_cols=176 Identities=9% Similarity=-0.006 Sum_probs=88.7
Q ss_pred CcEEEEeCCCCeEEEEEecC---CcEEEEEEeeCCCCEEEEEeCC-----------------------------------
Q 004410 409 KTVRLWQVGIDRCLRVFSHN---NYVTSVAFNPVDDNYFISGSID----------------------------------- 450 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~---~~V~~i~fsp~d~~~l~sgs~D----------------------------------- 450 (755)
..+.+||+.+.+....-... ..-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46899999888765433211 11122222 3 77888888865
Q ss_pred ----CcEEEEEcCCCeEEEeccCCc--ce-EEEEEccCCCeEEEEeC------CCcEEEEEC--CCCeEeeeeeEEeccc
Q 004410 451 ----GKVRIWEVRRCQVVDYTDIRE--IV-SAVCYCPDGKGGIVGTM------TGNCRFYDI--KDNQLYQQNQICLQGK 515 (755)
Q Consensus 451 ----g~V~iwdl~~~~~~~~~~~~~--~V-~~v~~spdg~~la~gs~------dg~I~iwD~--~~~~~~~~~~~~~~~~ 515 (755)
..+.+||+.+.+-........ .- .+++. -+++.++.|+. ...+.+||+ .+..-... ..
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-----~~- 236 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-----AP- 236 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEEC-----CC-
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-----CC-
Confidence 578999998876543322221 11 22222 26667777654 345777887 44332211 00
Q ss_pred ccCCCC--CeEEEEEcCCCCCEEEEEECC----------------------CcEEEEECCcceeeEEEeeeccCCceEEE
Q 004410 516 KKLPGK--RITGFQFSPSDPSKVIVTSAD----------------------SLVRVLCGENVVGKFKASAFRVAGSQMFA 571 (755)
Q Consensus 516 ~~~~~~--~I~~v~fsp~d~~~l~s~s~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l 571 (755)
...... ....+.+ ++.+++.|+.+ ..+.+||..+..-............ ..
T Consensus 237 ~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~ 311 (357)
T 2uvk_A 237 VSSPDGVAGGFAGIS---NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GV 311 (357)
T ss_dssp SSTTTCCBSCEEEEE---TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SE
T ss_pred CCCCcccccceEEEE---CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ce
Confidence 111111 1122222 55677777632 2577888776544333321211111 22
Q ss_pred EEecCCCEEEEEeCCC------cEEEEEcCCCC
Q 004410 572 TFTSDGKHVVSPSEDS------NIYIWNYSNQD 598 (755)
Q Consensus 572 ~fspdg~~L~sgs~Dg------~I~iWd~~~~~ 598 (755)
+...++++++.|+.++ .|.++++++++
T Consensus 312 ~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 312 SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 2335788888888653 36666887765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.58 E-value=1.8 Score=44.04 Aligned_cols=175 Identities=8% Similarity=-0.004 Sum_probs=94.0
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeC----C-----CcEEEEEcCCCeEEEeccCC---cceE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSI----D-----GKVRIWEVRRCQVVDYTDIR---EIVS 474 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~----D-----g~V~iwdl~~~~~~~~~~~~---~~V~ 474 (755)
..+.+||..+++....-. ....-.+++. - ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 468888988877554321 1111112222 2 5677777765 2 46889999887655433222 1222
Q ss_pred EEEEccCCCeEEEEeCC-----CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----Cc
Q 004410 475 AVCYCPDGKGGIVGTMT-----GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----SL 544 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d-----g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----g~ 544 (755)
.+.+ +++.++.|+.+ ..+.+||+.+++-..... .......-..+.+ ++.+++.|+.+ ..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP------MLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSCBCCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC------CCccccceEEEEE---CCEEEEEeCCCCCCcCce
Confidence 2333 67777777644 358899998876543211 1111112222333 55677777654 45
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
+.+||..+..-............ .+++. -++++++.|+.+ ..|.+||+.+.+
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSG-AGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCeEeeCCCCCCcccc-ceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 88888776543322211111111 12222 267777777765 458899987765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.28 E-value=4.8 Score=40.97 Aligned_cols=175 Identities=10% Similarity=0.031 Sum_probs=92.3
Q ss_pred cEEEEeCCCCeEEEEE-ec-CCcEEEEEEeeCCCCEEEEEeC----CC-------cEEEEEcCCCeEEEeccCCc---ce
Q 004410 410 TVRLWQVGIDRCLRVF-SH-NNYVTSVAFNPVDDNYFISGSI----DG-------KVRIWEVRRCQVVDYTDIRE---IV 473 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~-~h-~~~V~~i~fsp~d~~~l~sgs~----Dg-------~V~iwdl~~~~~~~~~~~~~---~V 473 (755)
.+.+||..+++....- .. ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3789999988765521 11 11122222233 6788888873 12 17788988876654332221 12
Q ss_pred EEEEEccCCCeEEEEeCC-------CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC-----
Q 004410 474 SAVCYCPDGKGGIVGTMT-------GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA----- 541 (755)
Q Consensus 474 ~~v~~spdg~~la~gs~d-------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~----- 541 (755)
..+.+ +++.++.|+.+ ..+.+||+.+++-..... +.... ..-..+. . ++.+++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r----~~~~~~~--~-~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV----YGHNVIS--H-NGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE----ESCEEEE--E-TTEEEEECCEESSSC
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc----cccEEEE--E-CCEEEEEcCCCCCCC
Confidence 22222 67777777754 248889998876543211 11101 1111222 2 5667777654
Q ss_pred -CCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCC
Q 004410 542 -DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED-----SNIYIWNYSNQD 598 (755)
Q Consensus 542 -Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D-----g~I~iWd~~~~~ 598 (755)
-..+.+||..+..-....... ....-.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 245888998775443332111 1111112222 367777777754 347788887765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.24 E-value=5.2 Score=41.40 Aligned_cols=95 Identities=5% Similarity=-0.048 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCeEEEEEe--cCCcE-EEEEEeeCCCCEEEEEeC------CCcEEEEEc--CCCeEEEeccCC---cceE
Q 004410 409 KTVRLWQVGIDRCLRVFS--HNNYV-TSVAFNPVDDNYFISGSI------DGKVRIWEV--RRCQVVDYTDIR---EIVS 474 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~--h~~~V-~~i~fsp~d~~~l~sgs~------Dg~V~iwdl--~~~~~~~~~~~~---~~V~ 474 (755)
..+.+||+.+.+....-. ....- .+++.. ++.+++.|+. ...+.+||+ .+.+-....... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 578999998877655432 11112 233332 5677777764 345777887 444433322221 1111
Q ss_pred EEEEccCCCeEEEEeCC----------------------CcEEEEECCCCeEe
Q 004410 475 AVCYCPDGKGGIVGTMT----------------------GNCRFYDIKDNQLY 505 (755)
Q Consensus 475 ~v~~spdg~~la~gs~d----------------------g~I~iwD~~~~~~~ 505 (755)
+.+...+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~ 298 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence 11223367777777632 24788998876543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.15 E-value=21 Score=41.30 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=116.5
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCe--EEEEEe--------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDR--CLRVFS--------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~--~~~~~~--------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
..|.++.-..+|.|..|+.+ -+..++..+++ ....+. ....|.++.-.. ++++. .|+ ++-|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLW-IAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEE-EEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEE-EEe-CCcHhhcCc
Confidence 46888888888877777765 46667665432 122222 124588888766 55544 455 467999999
Q ss_pred CCCeEEEec--c-----CCcceEEEEEccCCCeEEEEeCCCcEEEEECCC------CeEeeeeeEEecccccCCCCCeEE
Q 004410 459 RRCQVVDYT--D-----IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD------NQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 459 ~~~~~~~~~--~-----~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~------~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
.+++...+. . ....|.++....+| .|.+|+..+-|.+||..+ ...... .............|.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~i~~ 476 (758)
T 3ott_A 400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAE--QNYSVHNGLSGMFINQ 476 (758)
T ss_dssp TTTEEEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECS--EEECGGGTCSCSCEEE
T ss_pred CCCcEEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecc--cccccccccccceeee
Confidence 888766432 1 12457888877665 577788777788898653 111100 0011111223456888
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+...+ ++.+.+.++..+-|..+|..+........ .......+.++....+|.+.+.. .. -|..|+..++.
T Consensus 477 i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 477 IIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDES 547 (758)
T ss_dssp EEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CC
T ss_pred EEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCc
Confidence 88877 55544433444557778876543222110 00112457788888888877654 44 58888876554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=4.6 Score=46.55 Aligned_cols=194 Identities=10% Similarity=0.126 Sum_probs=103.5
Q ss_pred eEEEEeCC----CcEEEEeCCCCeEEEEE-e-------cCC-cEEEEEEeeCCCCEEEEEeCCC------cEEEEEcCCC
Q 004410 401 FLLSSSAD----KTVRLWQVGIDRCLRVF-S-------HNN-YVTSVAFNPVDDNYFISGSIDG------KVRIWEVRRC 461 (755)
Q Consensus 401 ~L~s~s~D----g~V~iWdl~s~~~~~~~-~-------h~~-~V~~i~fsp~d~~~l~sgs~Dg------~V~iwdl~~~ 461 (755)
.++.|+.+ ..+.+||..+++....- . ... .-..+.+.. ++.+++.|+.++ .+.+||+.+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 56666643 46889998887665443 1 111 122223221 566777777543 5889999887
Q ss_pred eEEEeccCCcc--eEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 462 QVVDYTDIREI--VSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 462 ~~~~~~~~~~~--V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
+-........+ -.+++.-.+++.++.|+.++ .+.+||+.++.-..... .+..........++.+...++.+++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~---~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP---KDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC---SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC---CCCCCCcccceeEEEEeCCCCEEEE
Confidence 65543322221 22333334788888887655 69999999876432110 1111112222334555552366777
Q ss_pred EEEC--C-----CcEEEEECCcce------eeEEEeeeccCCceEEEEEecCCCEEEEEeCC--------CcEEEEEcCC
Q 004410 538 VTSA--D-----SLVRVLCGENVV------GKFKASAFRVAGSQMFATFTSDGKHVVSPSED--------SNIYIWNYSN 596 (755)
Q Consensus 538 s~s~--D-----g~I~iwd~~~~~------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D--------g~I~iWd~~~ 596 (755)
.|+. + +.+.+||..+.. .............-.+++...++++++.|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 358888877654 12111100111111223333347777777743 4577888776
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
.+
T Consensus 636 ~~ 637 (695)
T 2zwa_A 636 ET 637 (695)
T ss_dssp TE
T ss_pred Ce
Confidence 54
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.77 E-value=16 Score=37.48 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=62.7
Q ss_pred eEEEEeCCCcEEEEeCC--C---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe-------
Q 004410 401 FLLSSSADKTVRLWQVG--I---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ------- 462 (755)
Q Consensus 401 ~L~s~s~Dg~V~iWdl~--s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~------- 462 (755)
.|+..+..|.+..+.+. . |.....+.....|.++...+ .+.+++..+..|.++.-.+..-.
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCC
Confidence 67777777877777655 1 22222233566788777766 66789999999999888764321
Q ss_pred -EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCC
Q 004410 463 -VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501 (755)
Q Consensus 463 -~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~ 501 (755)
.. .+....+.+..+....+...++..+.+|.+.-++...
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 11 1222133454444444556777788889888887654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=90.55 E-value=24 Score=38.96 Aligned_cols=115 Identities=17% Similarity=0.040 Sum_probs=66.6
Q ss_pred cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeee-----eeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 468 DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQ-----NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 468 ~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~-----~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
........+.++|||+++++++. +.++.++|+........ ..-.+.. ....+......+|.+ ++.-..+---
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~e~GlGPlHt~Fd~-~G~aYTtlfi 397 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EPELGLGPLHTTFDG-RGNAYTTLFI 397 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CCBCCSCEEEEEECS-SSEEEEEETT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-eccCCCcccEEEECC-CCceEeeeee
Confidence 33445677899999999988664 77899999984211000 0000001 111345667889998 6755555558
Q ss_pred CCcEEEEECCccee--------eEEEeeeccCCceEEEEE------ecCCCEEEEEeC
Q 004410 542 DSLVRVLCGENVVG--------KFKASAFRVAGSQMFATF------TSDGKHVVSPSE 585 (755)
Q Consensus 542 Dg~I~iwd~~~~~~--------~~~~~~~~~~~~v~~l~f------spdg~~L~sgs~ 585 (755)
|+.|.-|++..... .......-| ..+-.+.- .+||++|++...
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCCccCCCCccEEEEecc
Confidence 99999999765321 111111112 12222322 578999999753
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.28 E-value=20 Score=37.62 Aligned_cols=153 Identities=8% Similarity=-0.078 Sum_probs=77.8
Q ss_pred CCEEEEEEcC--CCeEEEEeCCC----cEEEEeCCCCeEEEEEe---------------cCCcEEEEEEeeCC-CCEEEE
Q 004410 389 SEVLDLSWSK--NGFLLSSSADK----TVRLWQVGIDRCLRVFS---------------HNNYVTSVAFNPVD-DNYFIS 446 (755)
Q Consensus 389 ~~V~~l~~s~--~~~L~s~s~Dg----~V~iWdl~s~~~~~~~~---------------h~~~V~~i~fsp~d-~~~l~s 446 (755)
..|.+|++.| .+.|..+...+ .|...+ ..++.-..+. ....|.+|++.|.+ .+.++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588899988 44566665555 454432 2222211111 11257889998744 556666
Q ss_pred EeCCCcEEEEEcCCCeEEEecc-------------------CCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEee
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTD-------------------IREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQ 506 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~-------------------~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~ 506 (755)
+...+.|...+-....-..... ....+.+|.++|. ...|++++.++.|...+-. ++...
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCce
Confidence 6666655544322222111110 1235789999983 4567777666555444322 22111
Q ss_pred eeeEEeccc-cc----CCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 507 QNQICLQGK-KK----LPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 507 ~~~~~~~~~-~~----~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.....+... .. .....+..+.+.|.++..|+++...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 100000000 00 00235889999996677888877655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.20 E-value=10 Score=38.62 Aligned_cols=161 Identities=6% Similarity=-0.076 Sum_probs=90.2
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEe----CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCe
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS----IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG 484 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs----~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~ 484 (755)
..|+..++...+....... . +..|++ +++.|+-.. ....|...++.......+..+.. ..++|+++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4677778777654333222 1 236777 677776655 34456666776555444444332 456888988
Q ss_pred EEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC--CcEEEEECCcceeeEEEee
Q 004410 485 GIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD--SLVRVLCGENVVGKFKASA 561 (755)
Q Consensus 485 la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D--g~I~iwd~~~~~~~~~~~~ 561 (755)
|+-.+. ...|.+.++.++..... ..+ ... ..+.| ++.+|+-.... ..|..-++........
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l----~~~-------~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--- 222 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALF----YDC-------NCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVL--- 222 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEE----ECS-------CEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEEC---
T ss_pred EEEEeCCCceEEEEECCCCCEEEE----eCC-------Ccc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEE---
Confidence 887665 56788888887654321 111 112 23558 56666655443 2455555443322211
Q ss_pred eccCCceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCC
Q 004410 562 FRVAGSQMFATFTSDGKHVVSPSE--DSNIYIWNYSNQD 598 (755)
Q Consensus 562 ~~~~~~v~~l~fspdg~~L~sgs~--Dg~I~iWd~~~~~ 598 (755)
. ...+ ..|+|++++|+-+.. .+.|..-+++...
T Consensus 223 t--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 223 T--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp S--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred e--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 1 1222 348889999887643 3566666666543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.77 E-value=33 Score=35.85 Aligned_cols=194 Identities=11% Similarity=0.019 Sum_probs=94.7
Q ss_pred CCEEEEEEcC---CCeEEEEeCCCcEEEEeCCCCeEEEEEe--------------------cCCcEEEEEEeeCCCCEEE
Q 004410 389 SEVLDLSWSK---NGFLLSSSADKTVRLWQVGIDRCLRVFS--------------------HNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 389 ~~V~~l~~s~---~~~L~s~s~Dg~V~iWdl~s~~~~~~~~--------------------h~~~V~~i~fsp~d~~~l~ 445 (755)
..|.+|++.| .+.|..+...+.|...+-. ++.-..+. ....|.+|.++|.+.+.++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3577788875 3466666666666555322 22111111 1245889999884455555
Q ss_pred EEeCCCcEEEEEcCCCeEEEecc-C------------CcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEE
Q 004410 446 SGSIDGKVRIWEVRRCQVVDYTD-I------------REIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~~~~~-~------------~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~ 511 (755)
.+..++.|...+-....-..... . ...+.+|.++|+ ...|++++..+ |...+-....- ....
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW-~~~~-- 269 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVW-KRIG-- 269 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEE-ECGG--
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcc-eECC--
Confidence 55544544443222111111110 0 134889999985 46677776544 54444332222 1110
Q ss_pred ecccccCCC---CCeEEEEEcCCCCCEEEEEEC-----------CCcEEEEECCcceeeEEEeeeccCC-------ceEE
Q 004410 512 LQGKKKLPG---KRITGFQFSPSDPSKVIVTSA-----------DSLVRVLCGENVVGKFKASAFRVAG-------SQMF 570 (755)
Q Consensus 512 ~~~~~~~~~---~~I~~v~fsp~d~~~l~s~s~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~-------~v~~ 570 (755)
..... ..+..+.+.|.+...|+++.. ++...||...+.-..+......... ....
T Consensus 270 ----~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~ 345 (394)
T 3b7f_A 270 ----DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQA 345 (394)
T ss_dssp ----GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBS
T ss_pred ----CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEE
Confidence 00111 345678888866666666542 3334566544432222221111111 1135
Q ss_pred EEEecC-CCEEEEEeCCCcEEE
Q 004410 571 ATFTSD-GKHVVSPSEDSNIYI 591 (755)
Q Consensus 571 l~fspd-g~~L~sgs~Dg~I~i 591 (755)
++++|. ...|+.++.++.|+.
T Consensus 346 ~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 346 MTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp EEECCSSSCCEEEECTTSCEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEE
Confidence 777774 345666665665543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.56 E-value=10 Score=41.26 Aligned_cols=116 Identities=8% Similarity=0.018 Sum_probs=64.1
Q ss_pred cceEEEEEccCCC-eEEEEeCCCcEEEEECCCCeEeeeeeEEeccccc-----CCCCCeEEEEEcCC---CCCEEEEEEC
Q 004410 471 EIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK-----LPGKRITGFQFSPS---DPSKVIVTSA 541 (755)
Q Consensus 471 ~~V~~v~~spdg~-~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~-----~~~~~I~~v~fsp~---d~~~l~s~s~ 541 (755)
.....|+|.|||. .|+++...|.|++++......... ...+..... .....+..|+|+|+ ++.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP-YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC-SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee-ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4567899999996 677778899999997543321111 111111111 12467889999993 2344443332
Q ss_pred C------------CcEEEEECCc----------ceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCC
Q 004410 542 D------------SLVRVLCGEN----------VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDS 587 (755)
Q Consensus 542 D------------g~I~iwd~~~----------~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg 587 (755)
+ ..|.-|.... ....+.............++|.|||.+.++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1333344321 11122221112234567899999998888776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.52 E-value=18 Score=44.52 Aligned_cols=240 Identities=11% Similarity=0.183 Sum_probs=125.6
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe-ee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-RL 319 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~-~~ 319 (755)
+..+|..+.+|.-. ..++.|+++....+.-+ .. -...|.-=+|-.+ +.|+-.+ +..|.-|++.... ..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks-~~-------~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-HT-------MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPV 139 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcc-cc-------cCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccH
Confidence 56778888777765 67899999876554211 11 1235666677543 3444444 3579999996422 22
Q ss_pred eeeecCC--CCCceeEEeeCCCCceeEE-eecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 320 DGFDVQD--TDPSCLYFTINHLSQLIPI-DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 320 ~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
+.+..+. .....+.+..+.......+ +.... .+.-.+.+- .+....+.-+.+.||.+....+..
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~--------~~~v~G~mQ-----LyS~er~~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ--------QNRVVGAMQ-----LYSVDRKVSQPIEGHAASFAQFKM 206 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC--------CCcccceee-----eeecccccchhhhHhHhhhheecc
Confidence 2222111 1111222222222211111 11000 001111222 222223334455677655544443
Q ss_pred cCC--C-eEEE-EeC---CCcEEEEeCCCC---------eEEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 397 SKN--G-FLLS-SSA---DKTVRLWQVGID---------RCLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 397 s~~--~-~L~s-~s~---Dg~V~iWdl~s~---------~~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..+ . .|++ +.. .+.++|-++... +.+..+ . ..+...++..++ ....+..-+.-|.|.+|
T Consensus 207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLY 285 (1630)
T ss_pred CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEE
Confidence 211 1 2322 221 268888888543 111111 1 355667888888 77788888899999999
Q ss_pred EcCCCeEEEec-cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 457 EVRRCQVVDYT-DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 457 dl~~~~~~~~~-~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
|+.++.++... -....|...+.+.....++.....|.|.-..+....++
T Consensus 286 d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 99999888433 23445555555555556666667887777766665554
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=12 Score=43.07 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=84.5
Q ss_pred CC-eEEEEeCC------CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEEcCCCeEEEec
Q 004410 399 NG-FLLSSSAD------KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDG--KVRIWEVRRCQVVDYT 467 (755)
Q Consensus 399 ~~-~L~s~s~D------g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwdl~~~~~~~~~ 467 (755)
++ .++.|+.+ ..+.+||..+.+....-. ....-.+++... ++.+++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55666543 358899998876554322 111222333323 678888888765 6999999987755433
Q ss_pred c------CCcceEEEEEccC-CCeEEEEeC--C-----CcEEEEECCCCeE-----eeeeeEEecccccCCCCCeEEEEE
Q 004410 468 D------IREIVSAVCYCPD-GKGGIVGTM--T-----GNCRFYDIKDNQL-----YQQNQICLQGKKKLPGKRITGFQF 528 (755)
Q Consensus 468 ~------~~~~V~~v~~spd-g~~la~gs~--d-----g~I~iwD~~~~~~-----~~~~~~~~~~~~~~~~~~I~~v~f 528 (755)
. ......++.+..+ ++.++.|+. + ..+.+||+.++.- ..... ... .........+.+
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~-~~p---~~~R~~~~~~~~ 605 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL-QHP---LFQRYGSQIKYI 605 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE-ECG---GGCCBSCEEEEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC-CCC---CCCcccceEEEe
Confidence 2 1222334556555 667777765 2 3589999988762 11110 000 011112223333
Q ss_pred cCCCCCEEEEEEC--------CCcEEEEECCcceee
Q 004410 529 SPSDPSKVIVTSA--------DSLVRVLCGENVVGK 556 (755)
Q Consensus 529 sp~d~~~l~s~s~--------Dg~I~iwd~~~~~~~ 556 (755)
. ++.+++.|+. ...|.+||..+....
T Consensus 606 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 606 T--PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp E--TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred C--CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2 3677777774 356889998765443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=83.75 E-value=39 Score=34.09 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=89.3
Q ss_pred EEcCCC-eEEEEe----CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeEEEecc
Q 004410 395 SWSKNG-FLLSSS----ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVDYTD 468 (755)
Q Consensus 395 ~~s~~~-~L~s~s----~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~~~~~~ 468 (755)
.|++++ .|+-.. ....|...++......+...+.. ..++| +++.|+-.+. ...|.+.++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 455555 555444 34456666776554444444432 45677 6666665554 6788888888776554432
Q ss_pred CCcceEEEEEccCCCeEEEEeCCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC--CCc
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA--DSL 544 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~--Dg~ 544 (755)
+.. ...+.|++.+|+-....+ .|..-++.+..... + ....+. .|+| ++.+|+-+.. .+.
T Consensus 185 --~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-----L------t~~~~~--~~~~-~g~~Iy~~~~~~~~~ 247 (302)
T 3s25_A 185 --CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-----L------TEANIE--HYNV-YGSLIFYQRGGDNPA 247 (302)
T ss_dssp --SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-----C------SCSCEE--EEEE-ETTEEEEEECSSSCE
T ss_pred --CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-----E------eCCCcc--eEEE-CCCEEEEEECCCCcE
Confidence 222 234669998888766543 56666776654322 1 112232 3667 5566665432 345
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-CCCcEEEEEc
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-EDSNIYIWNY 594 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-~Dg~I~iWd~ 594 (755)
|...++......... .. .+. .+++.+.+|+-.. ..+.|+.-++
T Consensus 248 i~~~~~DG~~r~~l~--~~---~~~--~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 248 LCVVKNDGTGFKELA--KG---EFC--NINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEETTSCCCEEEE--ES---CEE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred EEEEECCCCccEEee--CC---ccc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence 555555432222111 11 122 3455666666554 3344444443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=83.25 E-value=48 Score=34.72 Aligned_cols=170 Identities=7% Similarity=0.047 Sum_probs=95.6
Q ss_pred cEEEEeCCCC--eEEEEEe-------cCCcEEEEEEeeC--C----CCEEEE-EeCCCcEEEEEcCCCeEEEecc----C
Q 004410 410 TVRLWQVGID--RCLRVFS-------HNNYVTSVAFNPV--D----DNYFIS-GSIDGKVRIWEVRRCQVVDYTD----I 469 (755)
Q Consensus 410 ~V~iWdl~s~--~~~~~~~-------h~~~V~~i~fsp~--d----~~~l~s-gs~Dg~V~iwdl~~~~~~~~~~----~ 469 (755)
.|.+||+.++ +.++.+. ....+..+.+... + +.+++. =+..+-|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999999 8888874 3456888998821 1 334333 3346789999999887654331 0
Q ss_pred ---------------CcceEEEEEccC----CCeEEEEeCCCcEEEEECC-----CCeEeeeeeEEecccccCCCCCeEE
Q 004410 470 ---------------REIVSAVCYCPD----GKGGIVGTMTGNCRFYDIK-----DNQLYQQNQICLQGKKKLPGKRITG 525 (755)
Q Consensus 470 ---------------~~~V~~v~~spd----g~~la~gs~dg~I~iwD~~-----~~~~~~~~~~~~~~~~~~~~~~I~~ 525 (755)
...+..|+++|+ ++.|.-....+. ++|.+. ..... ..+...+.+ .....-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~--~~v~~~G~k-g~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGK--LNPELLGNR-GKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCC--CCCEEEEEC-CTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchh--hceEEeeec-CCCCCcce
Confidence 135777888887 666666555442 233322 11111 111112211 11234455
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCc-ce--eeEEEee-eccCCceEEEEEecCCCEEEEE
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGEN-VV--GKFKASA-FRVAGSQMFATFTSDGKHVVSP 583 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~-~~--~~~~~~~-~~~~~~v~~l~fspdg~~L~sg 583 (755)
+++.+.++.++++--..+.|..|+... .. ..+.... ...-.....+.+..+|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 667643677777778888999999765 21 1111100 1122345667766666554444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=83.18 E-value=55 Score=35.33 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=35.6
Q ss_pred eccCcceeecCCCC-eeEEeeCCCeEEEEECCCCc--ccccccccceeee----cccccEEEEEEecC
Q 004410 235 IDRHGSATLKPGDH-ELTLGQRMRRVRVHPVKKQS--RELSSLYTGQEFL----AHEGSILTMKFSLD 295 (755)
Q Consensus 235 ~~~~~~~~~spdg~-~lasgs~dg~V~Vw~~~~~~--~~~~~~~~~~~l~----~H~~~V~~l~fspd 295 (755)
.+....++|.|+|. .|+++...|+|++++..... ..+..+... ... +..+....|+|+|+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~-~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKL-VQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTT-BCCCCSSSCCCSEEEEEECTT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcce-eccCccccCCCcceeeEeCCC
Confidence 34445699999996 55666788999999754221 111111100 011 12467889999996
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.12 E-value=39 Score=33.62 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=116.9
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEE---eCCCCeEEEEEecCCcEEEEEEeeC-CCCEEEEEeCCCcEEEEEcCCCe--
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLW---QVGIDRCLRVFSHNNYVTSVAFNPV-DDNYFISGSIDGKVRIWEVRRCQ-- 462 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iW---dl~s~~~~~~~~h~~~V~~i~fsp~-d~~~l~sgs~Dg~V~iwdl~~~~-- 462 (755)
.+..+.-.... +|+..+.+|.++-- ++........+.....|..+.. +. ++.+++..+.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 34444433333 67777777776643 3322211101555667777754 32 46789999999999998876532
Q ss_pred ---EE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 463 ---VV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 463 ---~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
.. .+. ..+.+..+........++..+..|.+..+....-........-.....-..+..|..+...+ +...++
T Consensus 104 ~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll 181 (276)
T 3no0_A 104 AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLL 181 (276)
T ss_dssp STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEE
T ss_pred cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEE
Confidence 11 122 23456566666666789999999999888765322110000000011112345677666555 566889
Q ss_pred EEECCCcEEEEECCcceee------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE--EEcCCC
Q 004410 538 VTSADSLVRVLCGENVVGK------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI--WNYSNQ 597 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i--Wd~~~~ 597 (755)
..+..|.++.....+.... ... ....+.+..+....+...|+..+.+|.+.. ++.+.-
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~--i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEV--SGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEEC--CCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEE--EcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 9999999998886543211 111 123345555544444567788888899888 887543
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=80.63 E-value=58 Score=33.93 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCC-eEEEEeCCCcEEEEeCCC---------CeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc---CC----
Q 004410 398 KNG-FLLSSSADKTVRLWQVGI---------DRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV---RR---- 460 (755)
Q Consensus 398 ~~~-~L~s~s~Dg~V~iWdl~s---------~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl---~~---- 460 (755)
++. .+++.+.+|.|+--.+.. +.....+...+.+..+.... ..+.++..+..|.++.+.. +.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 445 888899999999764321 23334445677888777776 6677777788888766543 32
Q ss_pred --CeEE-Ee--ccCCcceEEEEEcc---CCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 461 --CQVV-DY--TDIREIVSAVCYCP---DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 461 --~~~~-~~--~~~~~~V~~v~~sp---dg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+..+ .+ ....+.|.++..-. ++.+|+.++..|.++.-.+..-......-+... ... .+..+..+.... +
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai-~L~-~~d~lv~v~~~~-~ 160 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI-NLD-EGDALVGVALTD-G 160 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS-CCC-TTCCEEEEEEEC-S
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE-EeC-CCCEEEEEEEeC-C
Confidence 2211 11 12234555554332 456899999999999888654322110000000 011 234555555544 5
Q ss_pred CCEEEEEECCCcEEEEECCccee------eEEEeeeccCCceEEEEEec-------------------------------
Q 004410 533 PSKVIVTSADSLVRVLCGENVVG------KFKASAFRVAGSQMFATFTS------------------------------- 575 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~~------~~~~~~~~~~~~v~~l~fsp------------------------------- 575 (755)
...|+..+.+|.+..+....... -.+.........|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 56788888899888887554211 11111122334555555443
Q ss_pred ----CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 ----DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 ----dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++.+|++.+..|..+...+..-.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45689999999999999886543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 755 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-22 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 6e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.7 bits (244), Expect = 5e-23
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 11/193 (5%)
Query: 271 LSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
+ + Y + F H + ++ + DG +AS D TVRVW V E
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRK----SSDLTCVVLPPKVFRLLEKPLHEFQG 386
C+ + I E K S D T + L G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVG 245
Query: 387 HSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYF 444
H + V + + G F+LS + DKT+R+W RC++ + H ++VTS+ F+ Y
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYV 304
Query: 445 ISGSIDGKVRIWE 457
++GS+D V++WE
Sbjct: 305 VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.8 bits (221), Expect = 3e-20
Identities = 51/318 (16%), Positives = 93/318 (29%), Gaps = 61/318 (19%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
H + + F + S ED T++VW + + F +
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 338 HLSQLIPIDVDKEKI--------------------------DKTKSLRKSSDLTCVVLPP 371
K+ + + S D T +
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNN 429
+ + F GH V + +++G + S S D+TVR+W V C H +
Sbjct: 131 QTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 430 YVTSVAFNP-------------------VDDNYFISGSIDGKVRIWEVRRCQVV-DYTDI 469
V +++ P + +SGS D +++W+V +
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529
V V + GK + R +D K+ + + L + +T F
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHE----HFVTSLDFH 298
Query: 530 PSDPSKVIVTSADSLVRV 547
V+ S D V+V
Sbjct: 299 K-TAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.3 bits (173), Expect = 6e-14
Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 60/290 (20%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAF 436
+ GH S V + + ++S+S D T+++W R H + V ++F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 437 NPV-----------------------------------------DDNYFISGSIDGKVRI 455
+ + ++ +S S D +++
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 456 WEVRRCQVVD-YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ----- 509
WEV+ V +T RE V V DG + R + + + + +
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 510 ------ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR 563
+ + + S ++ S D +++ G +
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST--GMCLMTLVG 245
Query: 564 VAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSS---RSKSIWSC 610
F S GK ++S ++D + +W+Y N+ + + S
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 42/326 (12%), Positives = 86/326 (26%), Gaps = 31/326 (9%)
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGG 485
H + VT V F+P + +S S D +++W+ + V + +
Sbjct: 16 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH----- 69
Query: 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545
Q + + ++ S D +
Sbjct: 70 ----SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD---KSSS 602
++ + + R DG + S S D + +W + ++ +
Sbjct: 126 KMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Query: 603 RSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNLE--GDL 660
+ + S G ET P P + ++K + L
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243
Query: 661 DQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKLLKSAC 720
+ F F L S A ++ + + C L +
Sbjct: 244 VGHDNWVRGVLFHSGGKFIL-----SCADDKTLRVWDYK------NKRCMKTLNAHEHFV 292
Query: 721 QSILSNPHLWGLVVVTASWDGRIRTY 746
S+ + VVT S D ++ +
Sbjct: 293 TSLDFHKT--APYVVTGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.3 bits (238), Expect = 4e-22
Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 40/304 (13%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLY 333
+ T + H I M + D + L S +DG + +W ++ ++ +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 334 FTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT-------------------------CVV 368
+ + + I K+ + ++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 369 LPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL-LSSSADKTVRLWQVGIDRCLRVFS- 426
+ F GH+ +V+ LS + + L +S + D + +LW V C + F+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREI---VSAVCYCPDGK 483
H + + ++ F P + N F +GS D R++++R Q + I +++V + G+
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 484 GGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543
+ G NC +D L G R++ + D V S DS
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGV----LAGHD----NRVSCLGVTD-DGMAVATGSWDS 334
Query: 544 LVRV 547
+++
Sbjct: 335 FLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (154), Expect = 1e-11
Identities = 40/313 (12%), Positives = 92/313 (29%), Gaps = 60/313 (19%)
Query: 349 KEKI-DKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406
K +I D K+ ++ V R+ + +GH +++ + W + L+S+S
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 407 ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSID--------------- 450
D + +W + +++V + A+ P + G +
Sbjct: 75 QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134
Query: 451 ------------------------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCP 480
Q +T V ++ P
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 481 DGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540
D + + G + + +D+++ Q G I F P + + S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQT----FTG----HESDINAICFFP-NGNAFATGS 245
Query: 541 ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600
D+ R+ S + +F+ G+ +++ +D N +W+ D++
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 601 SS---RSKSIWSC 610
+
Sbjct: 306 GVLAGHDNRVSCL 318
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 7e-07
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL 299
S + L G V K R H+ + + + DG +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAV 327
Query: 300 ASGGEDGTVRVW 311
A+G D +++W
Sbjct: 328 ATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.3 bits (217), Expect = 3e-19
Identities = 61/313 (19%), Positives = 108/313 (34%), Gaps = 33/313 (10%)
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
NH + P +D + +L+K ++ ++ P + R ++ LH+ H+S V + +
Sbjct: 11 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFN 437
S +G L++ +KT ++++V + S + Y+ SV F+
Sbjct: 71 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
P R V+ + + ++ Y P G + G+ R +
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN----- 552
D++ Q I +T SP D + S D VRV E
Sbjct: 191 DLRTGQCSLTLSIE---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 553 VVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCES 612
+ S S FT DG+ VVS S D ++ +WN N + S
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 301
Query: 613 FLSHNVSVAIPWV 625
+ V
Sbjct: 302 VTYIGHKDFVLSV 314
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.3 bits (217), Expect = 3e-19
Identities = 65/336 (19%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE---RLDGFDVQDTDPSCLYF 334
+ L H + +KFS DG+YLA+G + T +V++V + RL + DP L
Sbjct: 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114
Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
+ + S L V K ++ ++ + +
Sbjct: 115 SSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
+ L+S S D+TVR+W + +C S + VT+VA +P D Y +GS+D VR
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230
Query: 455 IWEVRRCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ 506
+W+ +V+ T ++ V +V + DG+ + G++ + + +++++
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 507 QNQICLQGKKKL----PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE--NVVGKFKAS 560
++ G ++ + + +D ++ S D V + N + +
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGH 349
Query: 561 AFRV--AGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594
V ++ + + S D IW Y
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.8 bits (195), Expect = 2e-16
Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 57/223 (25%)
Query: 245 PGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304
+ G R VRV + + H+ S+ ++ F+ DGQ + SG
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDL 364
D +V++W + ++
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSG------------------------------------ 298
Query: 365 TCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLR 423
+ GH VL ++ ++N ++LS S D+ V W L
Sbjct: 299 --------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344
Query: 424 VFS-HNNYVTSVAFNPV-----DDNYFISGSIDGKVRIWEVRR 460
+ H N V SVA + N F +GS D K RIW+ ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.6 bits (171), Expect = 2e-13
Identities = 50/297 (16%), Positives = 96/297 (32%), Gaps = 51/297 (17%)
Query: 254 QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
V + + + + I ++ FS DG++LA+G ED +R+W +
Sbjct: 91 SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150
Query: 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRK------------- 360
+ + + D L + + + +I ++ +
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 361 -------------SSDLTCVVLPP---KVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403
S D V + L+ GH V + ++++G ++
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 404 SSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFISGSID 450
S S D++V+LW + H ++V SVA +D Y +SGS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKD 329
Query: 451 GKVRIWEVRRCQVVD-YTDIREIVSAVCYC------PDGKGGIVGTMTGNCRFYDIK 500
V W+ + + R V +V P+ G+ R + K
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 4e-17
Identities = 43/338 (12%), Positives = 100/338 (29%), Gaps = 36/338 (10%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL-----------------DGFDV 324
H+ ++T G + SG +D T++VW + + L +
Sbjct: 14 GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384
TD + + + + + K +V+ +
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444
+ ++S + D V++W + CL + D +
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHV 190
Query: 445 ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQL 504
+SGS+D +R+W+V + +T + G + +DIK Q
Sbjct: 191 VSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249
Query: 505 YQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGEN--VVGKFKASAF 562
Q Q + + + + VI +S D V++ + +
Sbjct: 250 LQTLQGPNK--------HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301
Query: 563 RVAGSQMFA-TFTSDGKHVVSPSED----SNIYIWNYS 595
+G ++ ++ S + + + + ++
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 3e-12
Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 20/247 (8%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFN 437
K +GH V+ ++S S D T+++W +CLR H V S
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
+ +T + C K + G+ R +
Sbjct: 67 DNIIISG----STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 498 DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF 557
DI+ Q + + + + KV ++ + L G
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH------ 176
Query: 558 KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHN 617
+ + DG HVVS S D++I +W+ + + + +
Sbjct: 177 ---------TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 618 VSVAIPW 624
+
Sbjct: 228 NILVSGN 234
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 3e-14
Identities = 45/298 (15%), Positives = 97/298 (32%), Gaps = 33/298 (11%)
Query: 273 SLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCL 332
SL + +++ D Q + SG D T+++W E CL
Sbjct: 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 333 YFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC---------------------VVLPP 371
+ + + T + + C + +
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYV 431
GH + V + + + S+S D+T+++W V + N +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASGDRTIKVWNTSTCEF--VRTLNGHK 178
Query: 432 TSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT 491
+A D +SGS D +R+W++ + + E + + + + G
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYD 237
Query: 492 GNCRFYDIKDNQLYQ--QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547
G + +D+ + +CL+ + G R+ QF D +++ +S D + +
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-RVFRLQF---DEFQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 8e-07
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 372 KVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV---------GIDRCL 422
+++ + E++ N ++S + D +++W + CL
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260
Query: 423 RVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
R H+ V + F D+ +S S D + IW+
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 248 HELTLGQRMRRVRVHPVK--KQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305
+ G +++V + R + + + H G + ++F D + S D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286
Query: 306 GTVRVW 311
T+ +W
Sbjct: 287 DTILIW 292
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 4e-14
Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 8/239 (3%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQV----GIDRCLRVFSHNNYVTS 433
+ + Q + D+ + LL +S D ++ +++ L+ + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGN 493
F D G++ G++ ++ E +C + + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 494 CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV--LCGE 551
I Y I ++ K ++ S++IV +S V+ L
Sbjct: 122 GLIEVIDPRN-YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 552 NVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSC 610
+ + A + + S D + + + +Q + SK
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 34/342 (9%), Positives = 86/342 (25%), Gaps = 29/342 (8%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
A + I +K L DG++ V+K L ++ +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKF----------DIQAKNVDLLQSLRYKHP 58
Query: 342 LIPIDV--DKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399
L+ + + + +++ ++ P L + + D
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 400 GFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459
+ I ++ + + + I G + +V+ + +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 460 RCQVV-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN-------QLYQQ 507
C+ + +I + +G ++ G D + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 508 NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGS 567
L K + +FSP + +D ++ + + K F
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFNE 294
Query: 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWS 609
+ + D +Q + S I+
Sbjct: 295 DSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASS-IYI 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 9e-13
Identities = 45/313 (14%), Positives = 100/313 (31%), Gaps = 26/313 (8%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS 340
L H + + S +++ +GG G V+VW + + P +N +
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP--------GNKSPVSQLDCLNRDN 98
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
+ + + +L + + + + + +
Sbjct: 99 YIRSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460
S +D + +W + +R F + S D +G +D VR W++R
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 461 CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520
+ + D + ++ YCP G+ VG + N + YQ +
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE--------- 265
Query: 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHV 580
+ +F+ + T D+L+ + + S + + D K++
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAW---RTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 581 VSPSEDSNIYIWN 593
V+ S D ++
Sbjct: 322 VTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 25/245 (10%)
Query: 279 EFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINH 338
+ L + I + K DG L GGE T+ +W + ++ + P+C I+
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 339 LSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLP-----------------------PKVFR 375
S++ I ++ + +
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 376 LLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSV 434
L E + +S++ L + G +L V + V ++ H + V S+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
F +F+S D + W + + V + D K + G+
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 495 RFYDI 499
Y++
Sbjct: 331 TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 2e-11
Identities = 40/294 (13%), Positives = 71/294 (24%), Gaps = 45/294 (15%)
Query: 361 SSDLTCVVLPPKVFRLLEKPLHEFQ----GHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
+ V PP P H Q H V ++ S + + V++W +
Sbjct: 20 DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDI 79
Query: 417 GIDRC------LRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470
L + +NY+ S P D I G + IW++ ++
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Query: 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSP 530
A V + + D + I+
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 531 SDPS--KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF------------------ 570
+ + R L + + + + G +
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 571 ------------ATFTSDGKHVVSPSEDSNIYIWNYSNQDK--SSSRSKSIWSC 610
F GK VS +D+ + W S S S+ SC
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 312
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314
S+L+ S+D +Y+ +G D V++VI
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.2 bits (162), Expect = 2e-12
Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFN 437
H F + +W+K+ + + V +++ ++ ++V HN VT V +
Sbjct: 3 HSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS---AVCYCPDGKGGIVGTMTGNC 494
P D N ++ D +W ++ I I V + P+ K VG+ +
Sbjct: 61 P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 495 RFYDIKDNQLYQQNQIC 511
+ + +
Sbjct: 120 SICYFEQENDWWVCKHI 136
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 34/334 (10%), Positives = 87/334 (26%), Gaps = 15/334 (4%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
E H G + + ++ D + + G D VW + + + +
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104
Query: 338 HLSQLIPIDVDKEKID----KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
+ + I + ++ + V L P S
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164
Query: 394 LS-WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK 452
+S + T ++ + S + + + S D
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
Query: 453 VRIWEVR-RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
V + + + V + AV + + + + ++
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDS----AAGKLS 279
Query: 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFA 571
G+ +P K+ + + + + + A S G + K S +++
Sbjct: 280 FGGRLDVP-KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS--- 335
Query: 572 TFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSK 605
+ + D + IW+ + + + K
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (125), Expect = 7e-08
Identities = 34/349 (9%), Positives = 89/349 (25%), Gaps = 76/349 (21%)
Query: 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI 345
I ++ D +A + V ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIY---------------------------------- 34
Query: 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLS 404
+ K + L++ + +V + W+ + +++
Sbjct: 35 EKSGNKWVQVHELKEHNG--------------------------QVTGVDWAPDSNRIVT 68
Query: 405 SSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV--DDNYFISGSIDGKVRIWEVRRCQ 462
D+ +W + + ++ F GS + I +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 463 VVDYTDIREI-----VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
+ V ++ + P+ G+ CR + ++ ++ G K
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS-------AFRVAGSQMF 570
G+ + S V ++ S V + ++ V A +
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 571 ATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVS 619
TF ++ V + D ++ Y + S + + ++
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 1e-11
Identities = 38/391 (9%), Positives = 101/391 (25%), Gaps = 62/391 (15%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
AH+ I ++ + S DG ++VW + + + ++ + H
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLD--NENPKDKSYSHFVHKSGLHHVD 67
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVL------PPKVFRLLEKPLHEFQGHSSEVLDLS 395
++ ++++ + S + K + L + L
Sbjct: 68 VLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 396 WSKNG------FLLSSSADKTVRLWQVGIDR-------------------CLRVFSHNNY 430
W + L+++ T +W+ + + +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 431 VTSVAFNPVDDNYFISGSIDGKVRI-------WEVRRCQVVDYTDIREIVSAVCYCPDGK 483
TSV + +G +G V+I + + +V + P G
Sbjct: 187 ATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 484 GGIVGTMTGNCRFYDIKDNQLYQQNQIC--------LQGKKKLPGKRITGFQFSPSDPSK 535
+ + + + + + ++ + + F+ S
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-T 303
Query: 536 VIVTSADSLVRV--LCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593
+ D +R + + + + + G + P +++
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFD 357
Query: 594 YSNQDKSSSRSKSIWSCESFLSHNVSVAIPW 624
K ES + +I W
Sbjct: 358 VKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 31/257 (12%), Positives = 76/257 (29%), Gaps = 31/257 (12%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLW-------QVGIDRCLRVFSHNNYVTSVAF 436
+ H +++ +S + F +S S D +++W + D+ F H + + V
Sbjct: 10 GKAHDADIFSVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 437 ------NPVDDNYFISGSIDGKVRIWEVRR-----------CQVVDYTDIREIVSAVCYC 479
+ + + S G + + + R ++D + A+ +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 480 PDGKGG-----IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534
+ + G + + N + L L + +PS +
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFA-DESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 535 KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594
+ S L+ V + S R + + + + + S
Sbjct: 188 TSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 595 SNQDKSSSRSKSIWSCE 611
D +S +++ E
Sbjct: 248 IAHDSNSFGCITLYETE 264
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.3 bits (149), Expect = 4e-11
Identities = 42/314 (13%), Positives = 77/314 (24%), Gaps = 27/314 (8%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-SCLYFTINHLSQ 341
H +I + S DG+ L S +G + W + F + + T
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--- 67
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
L S + + P ++ SS+ L L+ S +G
Sbjct: 68 ---------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC 461
+ ++ K + ++ G + + VA + + G
Sbjct: 113 IAVAACYKHIAIYSHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 169
Query: 462 QVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521
T + + N
Sbjct: 170 VSEVKTIVHPAEITSVAFSNNG-----AFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 224
Query: 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVV 581
D ++ S D+ V V A S + + + +V
Sbjct: 225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284
Query: 582 SPSEDSNIYIWNYS 595
S +DSNI WN
Sbjct: 285 SAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.8 bits (145), Expect = 2e-10
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFN 437
GH+ + LS S +G L S+ A+ + W + RVF H +T +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPD 481
D + +S +++ V + +S+
Sbjct: 65 SKGDLFTVSWDDH--LKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 7e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 280 FLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
AH S + L+ + S G+D ++ W V
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 0.001
Identities = 31/328 (9%), Positives = 68/328 (20%), Gaps = 40/328 (12%)
Query: 420 RCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR--RCQVVDYTDIREIVSAV 476
+V HN +T+++ + D S +G + W++ V +++ +
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536
G + +K + + G S V
Sbjct: 62 KTTSKGD------LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 115
Query: 537 IVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596
+ V S+ + V + S +
Sbjct: 116 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT 175
Query: 597 QDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPSPTFGEKMQRNSLKQNNHQNL 656
+ + +S + + + +
Sbjct: 176 IVHPAEITSVAFSNNGAFLVATDQSRKV------------------IPYSVANNFELAHT 217
Query: 657 EGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLPNASPKAVSLSPLCKSKLKLL 716
+ + S W K P +
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK------------PSDHPIIIKG 265
Query: 717 KSACQSILSNPHLWGLVVVTASWDGRIR 744
A S+ S L +V+A D I+
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIK 293
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.9 bits (148), Expect = 8e-11
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGK 452
W + + AD T+R+W V +C++ + V + IS S+DG
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319
Query: 453 VRIWEV 458
+ +E+
Sbjct: 320 LNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 9e-08
Identities = 38/318 (11%), Positives = 78/318 (24%), Gaps = 20/318 (6%)
Query: 285 GSILTMKFSLDGQYLASG-GEDGTVRVWKVIE--HERLDGFDVQDTDP-SCLYFTINHLS 340
+ + +A G+ VR + + F + + + F+ S
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
Q + + + + + EFQ + + D+SW G
Sbjct: 78 QYLC----------SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 127
Query: 401 FLL---SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
L D L S ++ + D ++
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187
Query: 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
+D G + + +
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 247
Query: 518 LPGKRITGFQFSPSDPSKVIVTSADSLVRV--LCGENVVGKFKASAFRVAGSQMFATFTS 575
+ F S D K AD+ +RV + V K+ ++ Q+ T
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 307
Query: 576 DGKHVVSPSEDSNIYIWN 593
+G ++S S D + +
Sbjct: 308 NG-RIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 9e-06
Identities = 32/261 (12%), Positives = 71/261 (27%), Gaps = 19/261 (7%)
Query: 379 KPLHEFQGH-SSEVLDLSWSKNG---FLLSSSADKTVRLWQVGIDRCLRVF--------- 425
P+ +F GH SS V + +S +L S V +W D+
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG 485
++ ++++ + + ++ + C +
Sbjct: 113 VLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
Query: 486 IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLV 545
+ +MT + + + K S + V S +
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231
Query: 546 RVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKSSSRSK 605
K+ +FA D + + D+ I +W+ ++S+
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-----TTSKCV 286
Query: 606 SIWSCESFLSHNVSVAIPWVG 626
W+ + N V + G
Sbjct: 287 QKWTLDKQQLGNQQVGVVATG 307
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 17/277 (6%)
Query: 278 QEFLAHEGSILT-MKFS--LDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334
+F H S++T +KFS QYL SG E G V VW + + +V +
Sbjct: 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115
Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
+ + + + ++ S +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
+ S ++V V F+P + I+ D K+
Sbjct: 176 MTVGDDG----SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231
Query: 455 IWEVRRCQVVDYTDIREIVSAVC----YCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510
++ + + + Y + + D + R +D+ ++ Q+ +
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291
Query: 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547
+ ++I S D +
Sbjct: 292 ------DKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.001
Identities = 13/115 (11%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 426 SHNNYVTSVAFNPVDDNYFISGSIDGK-VRIWEVRRCQVVDYTDIR----EIVSAVCYCP 480
+ N+ T ++++P N VR + +V +V+ V + P
Sbjct: 15 TQRNFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 481 DGKGGIV--GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDP 533
+ G +G + ++ ++ ++ + ++ I+ +
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 379 KPLHEFQGHSSEV----LDLSWSKNGFLLSSSADKTVRLWQV 416
K + ++ ++ + + + NG ++S S D T+ +++
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 13/199 (6%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
F D + L + + S +
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV------LNFSFEVVSKPFVIPL 225
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
P + + +D+ P V + + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 398 KNGFLL-SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+ + + + V + V ++ +T + + D + DGK+ +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSA-DRKTVMVRKDDGKIYTF 341
Query: 457 EVRR--CQVVDYTDIREIV 473
+ + + TD R +V
Sbjct: 342 PLEKPEDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 23/325 (7%), Positives = 71/325 (21%), Gaps = 33/325 (10%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKV--IEHERLDGFDVQDTDPSCLYFTI 336
+ I ++ D + G + ++ + E+ +
Sbjct: 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98
Query: 337 NHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396
+ ++ ++ K ++ + + F
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH-------- 150
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
+ + ++ + + + N++ + AF+ D S
Sbjct: 151 ----GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 205
Query: 457 EVR--------RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508
+ + I + P G N + + +
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265
Query: 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQ 568
+ + I + ++ + K +
Sbjct: 266 YRMIIPLES--SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT--RKVTEVKNNLTD-- 319
Query: 569 MFATFTSDGKHVVSPSEDSNIYIWN 593
++D K V+ +D IY +
Sbjct: 320 --LRLSADRKTVMVRKDDGKIYTFP 342
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.4 bits (108), Expect = 9e-06
Identities = 38/350 (10%), Positives = 100/350 (28%), Gaps = 22/350 (6%)
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGK-VRIW 456
+G L++ + + V L+V + V FI G+ +G + I+
Sbjct: 13 LDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516
+ R + + + V A+ +GK +V D++ + +
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD 576
+ F +++ + ++ G+ +A F +D
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETD--GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 189
Query: 577 GKHVVSPSEDSNIYIWNYSNQDKSSSRSKSIWSCESFLSHNVSVAIPWVGLETTAGALPS 636
K++ S S + + S + + + + AG
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 637 PTFGEKMQRNSLKQNNHQNLEGDLDQNMPHSPSDCFSHARDFFLEYMTKSAATWPEEKLP 696
++ ++ +++ + + +S ++ K
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYS-VPVHGEFAAYYQGAPEK----------- 297
Query: 697 NASPKAVSLSPLCKSKLKLLKSACQSILSNPHLWGLVVVTASWDGRIRTY 746
+ + K+ +K+ + + V+ DG+I T+
Sbjct: 298 ----GVLLKYDVKTRKVTEVKNNLTDLRLSAD--RKTVMVRKDDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 4/37 (10%), Positives = 17/37 (45%)
Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKV 313
++ + ++ ++ S D + + +DG + + +
Sbjct: 307 TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 2e-10
Identities = 36/339 (10%), Positives = 96/339 (28%), Gaps = 30/339 (8%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQL 342
H S++T + Y+ +G +D +RV+ I + L D L + +
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--- 66
Query: 343 IPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFL 402
L S V + + + + ++
Sbjct: 67 ---------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111
Query: 403 LSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462
++ S D T+ +W++ + + + V P ++ YF+ + V
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 463 VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522
+ + + V K + + + + I D++ + + ++
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 231
Query: 523 ITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF-------ATFTS 575
++ + ++ S ++ A + + T
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY 291
Query: 576 DGKHVVSPSEDSNIYIWNYSN----QDKSSSRSKSIWSC 610
+++ ++ I+N + + IWS
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 9e-10
Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN 442
+GH + V+ ++ ++++ + DK +R++ + L S H+ V ++ +
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65
Query: 443 YFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG---IVGTMTGNCRFYDI 499
+SGS D VR+W++++ + + K + G+ + +
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 500 KDNQ 503
Sbjct: 126 PKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (135), Expect = 4e-09
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF--SHNNYVTSVAFNPV 439
H++ ++ + +L S ++ ++ + + + + + SV F
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334
Query: 440 DDNYFISGSIDGKVRIW 456
+ DG+ +
Sbjct: 335 -KTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 38/322 (11%), Positives = 94/322 (29%), Gaps = 19/322 (5%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
+ H+G + +K++ G ++ + T
Sbjct: 47 LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106
Query: 338 HLSQLIPIDVDKE----KIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393
++ ++ D K+ K S+ + L + +GH + V
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-R 165
Query: 394 LSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKV 453
++S S D T+ +W V +CL + S + + IS S+D +
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225
Query: 454 RIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513
RIW++ +++ + + D D + +
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSD-----------KFLVSAAADGSIRGWDANDYS 274
Query: 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATF 573
K ++ ++V+ +++ + + GK + Q+++
Sbjct: 275 RKFSYHHTNLSAITTFYVSD-NILVSGSENQFNIYNLRS--GKLVHANILKDADQIWSVN 331
Query: 574 TSDGKHVVSPSEDSNIYIWNYS 595
V + +D ++
Sbjct: 332 FKGKTLVAAVEKDGQSFLEILD 353
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (141), Expect = 4e-10
Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 39/254 (15%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437
++ L GH+ + L+ + L+S S D + W H+N + S+ +
Sbjct: 3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55
Query: 438 P--------------------------------VDDNYFISGSIDGKVRIWEVRRCQVVD 465
+D + + D + I + ++
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITG 525
+ SAV + + F + +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585
+ + K+++ S + + + V + S
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 586 DSNIYIWNYSNQDK 599
D+NI+I++ K
Sbjct: 236 DTNIFIYSVKRPMK 249
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 9/79 (11%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 382 HEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGID-RCLRVFS-HNNYVTSVAFNPV 439
+ + + + + + S D + ++ V + ++ + H + V ++ +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 440 DDNYFISGSIDGKVRIWEV 458
+ +S D ++ W V
Sbjct: 269 -PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 378 EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQV 416
K + H V +L W L+SS AD ++ W V
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 7e-06
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 231 MARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTM 290
++ G+ + + + G + ++ VK+ + + +L AH+ + +
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------AHKDGVNNL 264
Query: 291 KFSLDGQYLASGGEDGTVRVWKVI 314
+ L S G D ++ W V+
Sbjct: 265 LWETPS-TLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 41/321 (12%), Positives = 86/321 (26%), Gaps = 47/321 (14%)
Query: 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTIN 337
+ H I + + L SG DG + W + +
Sbjct: 7 KTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQ------------------D 44
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
H + ++ +D K + L+ S+ S +
Sbjct: 45 HSNLIVSLDNSKAQE---------------YSSISWDDTLKVNGITKHEFGSQPKVASAN 89
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
+GF + D + + Q ++ N+ ++V+ + + +V
Sbjct: 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 149
Query: 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKK 517
T +R S + P G + G YD++ ++ K
Sbjct: 150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 209
Query: 518 LPGKRITGFQ--FSPSDPSKVIVTSADSLVRVLC---GENVVGKFKASAFRVAGSQMFAT 572
+ + V S D+ + + ++ A V
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN----LL 265
Query: 573 FTSDGKHVVSPSEDSNIYIWN 593
+ + +VS D+ I WN
Sbjct: 266 WETPST-LVSSGADACIKRWN 285
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.5 bits (132), Expect = 1e-08
Identities = 17/187 (9%), Positives = 49/187 (26%), Gaps = 8/187 (4%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD-----VQDTDPSCLYFTIN 337
+ M+ + DG +G + + V L + D + +
Sbjct: 143 MPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
+ + D + + L + + + EF + S
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD--LKTGKTHTQEFADLTELYFTGLRS 260
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
+ + + + ++ + ++ VAF+ + G + ++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFN 319
Query: 458 VRRCQVV 464
+ V
Sbjct: 320 PDTLEKV 326
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 33/328 (10%), Positives = 69/328 (21%), Gaps = 86/328 (26%)
Query: 292 FSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDT----------DPSCLYFTINHLSQ 341
+Y+ + V V + D D Y NH
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 342 LIPIDVDKEKIDK-----------------------------------TKSLRKSSDLTC 366
+ ID+D K +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS 426
+ + L KP+ F V + + +G L + D V +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQ-VYLMRAADDGSLYVAGPDIYK--MDVKTGKYTVALP 180
Query: 427 HNNYVTSVAFN-------------------------PVDDNYFISGSIDGKVRIWEVR-- 459
N+ D + + +++
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240
Query: 460 RCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLP 519
+ ++ D+ E+ P + + YD+K +L + +
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKD-PNQIYGVLNRLAKYDLKQRKLIKAANL--------- 290
Query: 520 GKRITGFQFSPSDPSKVIVTSADSLVRV 547
F K+ + + + V
Sbjct: 291 DHTYYCVAFDK-KGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 13/252 (5%), Positives = 51/252 (20%), Gaps = 25/252 (9%)
Query: 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK--------------------- 312
S+ + S DG+ + +
Sbjct: 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137
Query: 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372
V + + + + K T +L + P
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY----TVALPLRNWNRKGYSAPD 193
Query: 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVT 432
V + + ++ + + +
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG 492
+ + ++ +++++ +++ ++ V + G +G
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 493 NCRFYDIKDNQL 504
+ ++ +
Sbjct: 314 DLAVFNPDTLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330
+ + + F G L GG + V+ E++ + D S
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.0 bits (125), Expect = 5e-08
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSIDGKV 453
+ S+SADKT+++W V + + + +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305
Query: 454 RIWE 457
Sbjct: 306 NFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.0 bits (125), Expect = 5e-08
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 2/122 (1%)
Query: 391 VLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSI 449
+ L + G + +V VG +++ H++ T +P Y SG +
Sbjct: 20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78
Query: 450 DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509
G VRIW+ + + T I V G R
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 510 IC 511
Sbjct: 139 NG 140
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 26/222 (11%), Positives = 55/222 (24%), Gaps = 5/222 (2%)
Query: 379 KPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSV 434
+ HS + S +G + S VR+W + + V +
Sbjct: 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
Query: 435 AFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNC 494
+++ G + + + + + +
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
Query: 495 RFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV 554
I + ++ + K + R + + V
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG-VDGTKTGVF 227
Query: 555 GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596
+GS T++ DG + S S D I IWN +
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 3e-06
Identities = 27/279 (9%), Positives = 70/279 (25%), Gaps = 14/279 (5%)
Query: 269 RELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTD 328
+ SL + + H K S G Y ASG G VR+W + + +
Sbjct: 43 VPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 102
Query: 329 PSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388
+ + S+ I + + L + +
Sbjct: 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 162
Query: 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGS 448
D + T + + + ++ + + G+
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222
Query: 449 IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508
G ++ + PDG + + +++ ++ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGL------TWSPDGTKIASASADKTIKIWNVATLKVEK-- 274
Query: 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRV 547
+ ++ + G + ++ SA+ +
Sbjct: 275 --TIPVGTRIED-QQLGIIW---TKQALVSISANGFINF 307
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 5e-08
Identities = 38/319 (11%), Positives = 73/319 (22%), Gaps = 35/319 (10%)
Query: 297 QYLASGGEDGTVRVWKVIEHERLDGFDVQDT-----------DPSCLYFTINHLSQLIPI 345
Y+ + + V + + D Y T+N L+ I
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 346 DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSS 405
D+ + L S V L S L+L+ +
Sbjct: 62 DLVTGETLGRIDL---STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP---- 114
Query: 406 SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465
V L+ + F +T +A+ D + D V +V+
Sbjct: 115 ---TRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP--EAGTLVE 168
Query: 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYD-----IKDNQLYQQNQICLQGKKKLPG 520
I+ + PD + + L
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228
Query: 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFR------VAGSQMFATFT 574
+ + D + R NV+ F + S +
Sbjct: 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVS 288
Query: 575 SDGKHVVSPSEDSNIYIWN 593
+DG V ++ ++
Sbjct: 289 TDGSTVWLGGALGDLAAYD 307
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 15/187 (8%), Positives = 50/187 (26%), Gaps = 10/187 (5%)
Query: 283 HEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDP-----SCLYFTIN 337
I + ++ DG L G D V + + + + +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 338 HLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397
S ++ + D + + + + + + + E + + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVN 249
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
+ + + + + ++ + SV + D + G G + ++
Sbjct: 250 PAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYD 307
Query: 458 VRRCQVV 464
+
Sbjct: 308 AETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 5e-06
Identities = 20/209 (9%), Positives = 52/209 (24%), Gaps = 18/209 (8%)
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
++L+ + + + +V P + + + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 458 VRRCQVVDYTDIREI------VSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQIC 511
+ + + D+ + PDGK + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 512 LQGKKKL---PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQ 568
++ ++IT ++ D SK+ D V +V + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKP-----IQSWE 176
Query: 569 MFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597
D V + E S + +
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTA 205
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDV 324
+ S ++ S DG + GG G + + E+ D+
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.003
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 5/127 (3%)
Query: 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRV--FSHNNYVTSVAFN 437
HE G + + ++ + + + + S A N
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 438 PVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFY 497
P + + +++ + + + +V DG +G G+ Y
Sbjct: 250 P---AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
Query: 498 DIKDNQL 504
D + +
Sbjct: 307 DAETLEK 313
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.9 bits (123), Expect = 2e-07
Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 14/152 (9%)
Query: 397 SKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456
N F ++ + L + ++V V + Y + D ++ +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88
Query: 457 EVRRCQ------VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI 510
++ + + + R + S+ + + I G + I D + + QI
Sbjct: 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQI 146
Query: 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542
G + + P I+ S +
Sbjct: 147 -----VSTRGMTVDTQTYHPEPRVAAIIASHE 173
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 17/164 (10%), Positives = 41/164 (25%), Gaps = 7/164 (4%)
Query: 432 TSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
+ N F ++ G++ + + ++V D V G+ +V
Sbjct: 22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR 81
Query: 491 TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS-DPSKVIVTSADSLVRVLC 549
D+ + + +I K R + I + +
Sbjct: 82 DARIDMIDLWAKEPTKVAEI-----KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136
Query: 550 GENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593
+ + + R + S + +I N
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (123), Expect = 2e-07
Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 12/212 (5%)
Query: 398 KNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457
+N F ++ + L V V + Y DGKV + +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89
Query: 458 VR--RCQVVD----YTDIREIVSAVCYCPDGKGGIV-GTMTGNCRFYDIKDNQLYQQNQI 510
+ V ++ R I ++ + K I D + + +
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149
Query: 511 C---LQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGS 567
++ P R+ S P ++ + ++ + + K +
Sbjct: 150 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-LNNLKTTEISAERF 208
Query: 568 QMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599
++ ++ + N + + + K
Sbjct: 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.2 bits (101), Expect = 9e-05
Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 16/179 (8%)
Query: 432 TSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTM 490
T + +N F ++ G++ + + ++ D V G+ V
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR 81
Query: 491 TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLC 549
G D+ + +I K + I + + I ++
Sbjct: 82 DGKVNMIDLWMKEPTTVAEI----KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD 137
Query: 550 GENVVGKF---------KASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQD 598
GE + K + + +V+ E I + +Y++ +
Sbjct: 138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 5e-04
Identities = 38/332 (11%), Positives = 81/332 (24%), Gaps = 77/332 (23%)
Query: 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDK 349
+ S G+YL G DG V + D+
Sbjct: 67 SRLSASGRYLFVIGRDGKVNMI----------------------------------DLWM 92
Query: 350 EKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADK 409
++ ++ S+ + W + +
Sbjct: 93 KEPTTVAEIKIGSEARSIETSK---------------------MEGWEDKYAIAGAYWPP 131
Query: 410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK---VRIWEVRRCQVVD 465
+ ++ S ++P I S V + E + +VD
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191
Query: 466 YTD-----IREIVSA-----VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGK 515
YTD EI + + I N + I G
Sbjct: 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG--KLVAIEDTGG 249
Query: 516 KKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575
+ R F P D V ++ + +A+++ + +
Sbjct: 250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE--GHPDNAWKI----LDSFPAL 303
Query: 576 DGKHVVSPSEDSNIYIWNYSNQDKSSSRSKSI 607
G + + ++ Y++ + + + S S+
Sbjct: 304 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 335
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 2e-07
Identities = 26/288 (9%), Positives = 65/288 (22%), Gaps = 32/288 (11%)
Query: 285 GSILTMKFSLDGQYLA----------SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYF 334
G + + DG ++A G V V+ + P F
Sbjct: 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----DIELPDAPRF 102
Query: 335 TINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394
+ + + D + + + + + R+L+ P ++
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 395 SWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVR 454
++G L + + + A++ + + GK+
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEI--THTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIH 219
Query: 455 IW-------------EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKD 501
E V Y + + +
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 279
Query: 502 NQLYQQNQICLQGKKKLP-GKRITGFQFSPSDPSKVIVT-SADSLVRV 547
+ + + K G I S + + + D + +
Sbjct: 280 RFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 20/190 (10%), Positives = 45/190 (23%), Gaps = 4/190 (2%)
Query: 277 GQEFLAHEGSILTMKFSLDGQYLASGGE-DGTVRVWKVIEHERLDGFDVQDTDPSCLYFT 335
+ DG +GT + D F + S
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208
Query: 336 INHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395
+ + I K L LT + + + + + L
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA--YHRALDRIYLL 266
Query: 396 WSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFI-SGSIDGKVR 454
+ +A + V + L F + + S+ + + + D +
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLY 326
Query: 455 IWEVRRCQVV 464
I + + +
Sbjct: 327 IHDAESGEEL 336
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 11/185 (5%), Positives = 34/185 (18%), Gaps = 7/185 (3%)
Query: 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQ 341
+ S AS V Q+ +
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLV 226
Query: 342 LIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401
+ + + K + + +
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286
Query: 402 LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNY--FISGSIDGKVRIWEVR 459
+A + + + S+ + ++ D + + + + I++
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345
Query: 460 RCQVV 464
Q
Sbjct: 346 SDQDQ 350
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 36/332 (10%), Positives = 68/332 (20%), Gaps = 73/332 (21%)
Query: 281 LAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLS 340
H GS + S A G V V+ D I
Sbjct: 72 AGHSGSDFAL-ASTSFARSAKGKRTDYVEVF--------------DPVTFLPIADIE--- 113
Query: 341 QLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG 400
L G ++ S
Sbjct: 114 ------------------------------------LPDAPRFSVGPRVHIIGNCASSAC 137
Query: 401 FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIW---- 456
L V ++ + +P GS +
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAA 194
Query: 457 -EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQ-QNQICLQG 514
V + S+ + G +V + + DI +
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254
Query: 515 KKKLPGKRITGFQF--SPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMF-- 570
+K R GFQ + +++ + + L AS + +G
Sbjct: 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH 314
Query: 571 ----ATFTSDGKH--VVSPSEDSNIYIWNYSN 596
DG + + + I++ ++
Sbjct: 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 8/77 (10%), Positives = 22/77 (28%)
Query: 404 SSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463
++S + + V ++ + +P +++ + V I + V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 464 VDYTDIREIVSAVCYCP 480
+ V P
Sbjct: 67 IATVPAGSSPQGVAVSP 83
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 0.001
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD 465
TV + G ++ +A P +++ S V + + +
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (93), Expect = 6e-04
Identities = 11/119 (9%), Positives = 35/119 (29%), Gaps = 8/119 (6%)
Query: 404 SSSADKTVRLWQV---GIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV-- 458
+S + + +W + G +V V + +P ++ + +V + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 459 --RRCQVVDYTDIREIVSAVCYCPDGK-GGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514
+ + ++ + G+ + GN ++D +
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 755 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.68 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.61 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.42 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.42 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.35 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.26 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.98 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.92 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.85 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.78 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.73 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.72 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.66 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.61 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.57 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.39 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.13 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.11 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.05 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.37 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.26 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.13 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.9 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.71 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.63 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.33 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.93 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.81 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.59 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.49 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.33 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.2 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.36 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.89 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.8 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.72 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.32 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 93.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.27 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.97 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.89 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.36 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.22 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 83.6 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.86 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.61 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-38 Score=334.41 Aligned_cols=285 Identities=19% Similarity=0.311 Sum_probs=248.2
Q ss_pred eeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 233 RIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 233 ~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
.|.+.|.+++|+|+|++||+|+ ||.|+|||+....... ........+|.+.|.+|+|+|||++|++|+.||.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 5778899999999999999997 7999999987543211 112234568999999999999999999999999999999
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
+..... +....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~v~ 145 (337)
T d1gxra_ 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred cccccc------------------------------------------------------------cccccccccccccc
Confidence 865431 11344567889999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCC
Q 004410 393 DLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIR 470 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~ 470 (755)
.++|+|++ .+++++.|+.|++|++.++++..... |...|++++|++ ++.++++++.|+.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~ 224 (337)
T d1gxra_ 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeecccccc
Confidence 99999999 99999999999999999999887774 899999999999 9999999999999999999999999888899
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..|.+++|+|+++.|++|+.+|.+++||++++.... ...|...|++++|+| ++.+|++++.|+.|++||.
T Consensus 225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred cceEEEEEcccccccceecccccccccccccccccc---------ccccccccceEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999999999887643 234678899999999 8899999999999999999
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+...... ..|...|.+++|+|++++|++|+.||.|+|||+
T Consensus 295 ~~~~~~~~---~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 295 PYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEE---EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEE---ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 87655544 457889999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-35 Score=318.10 Aligned_cols=298 Identities=20% Similarity=0.307 Sum_probs=240.3
Q ss_pred eeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccc-----------cccceeeecccccEEEEEEecCCCEEE
Q 004410 232 ARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSS-----------LYTGQEFLAHEGSILTMKFSLDGQYLA 300 (755)
Q Consensus 232 ~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~-----------~~~~~~l~~H~~~V~~l~fspdg~~La 300 (755)
..|.+.|.+++|+|||++||+|+ |+.|+||++........- ........+|...|++|+|+|+|++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 46889999999999999999987 899999998765431110 001122446888999999999999999
Q ss_pred EEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 301 SGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 301 Sgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
+|+.||.|++|+...++.
T Consensus 138 s~~~dg~v~i~~~~~~~~-------------------------------------------------------------- 155 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKI-------------------------------------------------------------- 155 (388)
T ss_dssp EEETTSCEEEEETTTTEE--------------------------------------------------------------
T ss_pred eccccccccccccccccc--------------------------------------------------------------
Confidence 999999999999877653
Q ss_pred ceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcC
Q 004410 381 LHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVR 459 (755)
Q Consensus 381 ~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~ 459 (755)
+..+.+|...|.+++|++++ .+++++.++.|++||+.+........+.....++.+.+.++++|++|+.||.|++||+.
T Consensus 156 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 235 (388)
T d1erja_ 156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235 (388)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecc
Confidence 23456799999999999998 99999999999999999999998888888888888888789999999999999999999
Q ss_pred CCeEEE--------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe----cccccCCCCCeEEEE
Q 004410 460 RCQVVD--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL----QGKKKLPGKRITGFQ 527 (755)
Q Consensus 460 ~~~~~~--------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~----~~~~~~~~~~I~~v~ 527 (755)
++.... ...|...|++++|+|++++|++|+.||.|++||+.++.......... ......|...|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 315 (388)
T d1erja_ 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315 (388)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE
Confidence 876653 23567889999999999999999999999999998766543222111 112234678899999
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEE------ecCCCEEEEEeCCCcEEEEEcC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATF------TSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f------spdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|+| ++.+|++++.||.|++||..+....... .+|.+.|+++++ +|++.+|+||+.||+|+||+++
T Consensus 316 ~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l--~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 316 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ECC-CCCEEEEEeCCCEEEEEECCCCcEEEEE--eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999 8899999999999999999887665554 679999999875 6789999999999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.1e-35 Score=302.99 Aligned_cols=283 Identities=20% Similarity=0.326 Sum_probs=250.2
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVR 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~ 309 (755)
.+.+|.+.|.+++|+|++++||+|+.||+|+||++.+.. ..+++.+|.+.|.+++|+|++.++++++.++.+.
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence 578899999999999999999999999999999986543 3456889999999999999999999999999999
Q ss_pred EEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCC
Q 004410 310 VWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSS 389 (755)
Q Consensus 310 vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~ 389 (755)
+|+...... ...+.+|..
T Consensus 85 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 102 (317)
T d1vyhc1 85 LWDFQGFEC--------------------------------------------------------------IRTMHGHDH 102 (317)
T ss_dssp EEETTSSCE--------------------------------------------------------------EECCCCCSS
T ss_pred ccccccccc--------------------------------------------------------------ccccccccc
Confidence 998765542 223456888
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-Ee
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DY 466 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~ 466 (755)
.+.++.|++++ .+++++.|+.+++||+.+++.+..+. |...+.+++|+| ++.+|++++.|+.|++|++.+++.. .+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 181 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAEL 181 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence 99999999999 99999999999999999999988885 899999999999 9999999999999999999998776 56
Q ss_pred ccCCcceEEEEEccCC--------------------CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 467 TDIREIVSAVCYCPDG--------------------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg--------------------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
..+...+.+++|+|++ ..+++++.||.|++||+.+++.+..+ ..|...|+++
T Consensus 182 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~v~~~ 253 (317)
T d1vyhc1 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--------VGHDNWVRGV 253 (317)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEE
T ss_pred ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE--------eCCCCCEEEE
Confidence 7788889999998753 46899999999999999999876542 2366799999
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+|+| ++.+|++++.||.|+|||..+....... ..|...|++++|+|++++|++|+.||+|+|||
T Consensus 254 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 254 LFHS-GGKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECS-SSSCEEEEETTTEEEEECCTTSCCCEEE--ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECC-CCCEEEEEECCCeEEEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999 8899999999999999999876655544 67899999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.6e-35 Score=307.51 Aligned_cols=287 Identities=20% Similarity=0.211 Sum_probs=232.0
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEH 316 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~ 316 (755)
....++++|+|+.||.+. ++.|.+|++... ...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~-------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCC-------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence 344589999999999885 567999997643 233557899999999999999999999999999999999776
Q ss_pred eeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 317 ERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
... ....+.+|...|.+++|
T Consensus 91 ~~~------------------------------------------------------------~~~~~~~~~~~v~~v~~ 110 (311)
T d1nr0a1 91 THI------------------------------------------------------------LKTTIPVFSGPVKDISW 110 (311)
T ss_dssp TCC------------------------------------------------------------EEEEEECSSSCEEEEEE
T ss_pred ccc------------------------------------------------------------cccccccccCccccccc
Confidence 421 12345679999999999
Q ss_pred cCCC-eEEEEeC--CCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCCCeEE-EeccCC
Q 004410 397 SKNG-FLLSSSA--DKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRCQVV-DYTDIR 470 (755)
Q Consensus 397 s~~~-~L~s~s~--Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~ 470 (755)
+|++ +|++++. ++.++||++.+++....+. |...|++++|+| +++ .|++|+.|+.|++||+++++.. ....|.
T Consensus 111 s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~ 189 (311)
T d1nr0a1 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 189 (311)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-cceeeeccccccccccccccccccccccccccc
Confidence 9999 7888775 5679999999998877774 889999999999 665 5889999999999999998877 566788
Q ss_pred cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEEC
Q 004410 471 EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCG 550 (755)
Q Consensus 471 ~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~ 550 (755)
..|++++|+|++++|++++.||.|++||+.++.....+.. .......|...|++++|+| ++.+|++++.|+.|+|||.
T Consensus 190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~ 267 (311)
T d1nr0a1 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNV 267 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred ccccccccCccccccccccccccccccccccccccccccc-cccccccccccccccccCC-CCCEEEEEeCCCeEEEEEC
Confidence 9999999999999999999999999999998877654332 1122335778899999999 8899999999999999999
Q ss_pred CcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 551 ENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 551 ~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+........ ..+......+.+.+++.+|++++.||.|++||.+
T Consensus 268 ~t~~~~~~l~-~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 268 ATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TTTEEEEEEE-CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCcEEEEEE-CCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 8765544332 1122222334455567789999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.2e-34 Score=299.91 Aligned_cols=293 Identities=19% Similarity=0.307 Sum_probs=251.1
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+..+++.+|.+.|.+++|+|++++||+|+.||+|+|||..+.. ..+.+.+|.+.|.+++|+|++++|++|+.|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-------KVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-------EEEEEECSCSCEEEEEECTTSSEEEEEETT
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-------eEEEEecccccEEeeEeeccceeeeeeccc
Confidence 4456788999999999999999999999999999999987543 235678899999999999999999999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++|+....... ......+.
T Consensus 119 ~~i~~~~~~~~~~~----------------------------------------------------------~~~~~~~~ 140 (340)
T d1tbga_ 119 NICSIYNLKTREGN----------------------------------------------------------VRVSRELA 140 (340)
T ss_dssp CCEEEEESSSSCSC----------------------------------------------------------CCEEEEEC
T ss_pred ceeecccccccccc----------------------------------------------------------cccceecc
Confidence 99999997654321 11234566
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
+|...........+..++....+.....|........... .+...+..+.+.+ ...++++|+.|+.|++||+++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~ 219 (340)
T d1tbga_ 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR 219 (340)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEE
Confidence 7888777777777778889999999999998887766655 4778899999998 8999999999999999999999887
Q ss_pred -EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCC
Q 004410 465 -DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADS 543 (755)
Q Consensus 465 -~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg 543 (755)
.+..|...|++++|+|++++|++|+.||.|++||+.......... ...+...|+.++|+| ++.+|++++.||
T Consensus 220 ~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~-~~~~l~~g~~dg 292 (340)
T d1tbga_ 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS------HDNIICGITSVSFSK-SGRLLLAGYDDF 292 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------CTTCCSCEEEEEECS-SSCEEEEEETTS
T ss_pred EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc------cccccCceEEEEECC-CCCEEEEEECCC
Confidence 567789999999999999999999999999999999887654321 234567799999999 899999999999
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
.|+|||..+....... .+|...|++++|+|++++|++|+.||.|+|||
T Consensus 293 ~i~iwd~~~~~~~~~~--~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 293 NCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999876655554 67999999999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.4e-35 Score=315.15 Aligned_cols=288 Identities=14% Similarity=0.193 Sum_probs=228.9
Q ss_pred eccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 004410 235 IDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVI 314 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~ 314 (755)
.+.|.+++|+|+|++||+|+.|+.|+||+..... +...+.+.+|.++|.+|+|+|++++||+|+.|++|+|||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-----~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 4678999999999999999999999999976433 22346688999999999999999999999999999999987
Q ss_pred CCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEE
Q 004410 315 EHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDL 394 (755)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l 394 (755)
++.... ...+.+|...|.++
T Consensus 82 ~~~~~~------------------------------------------------------------~~~~~~~~~~v~~i 101 (371)
T d1k8kc_ 82 GRTWKP------------------------------------------------------------TLVILRINRAARCV 101 (371)
T ss_dssp TTEEEE------------------------------------------------------------EEECCCCSSCEEEE
T ss_pred cccccc------------------------------------------------------------cccccccccccccc
Confidence 664321 23345788999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC-------
Q 004410 395 SWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC------- 461 (755)
Q Consensus 395 ~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~------- 461 (755)
+|+|++ .|++++.|++|++|++......... .|...|++++|+| ++.+|++|+.|++|++||+...
T Consensus 102 ~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~ 180 (371)
T d1k8kc_ 102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPA 180 (371)
T ss_dssp EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccc
Confidence 999999 9999999999999988765432222 3888999999999 9999999999999999998642
Q ss_pred -----------e-EEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEc
Q 004410 462 -----------Q-VVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFS 529 (755)
Q Consensus 462 -----------~-~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fs 529 (755)
+ ......|...|.+++|+|+|++|++++.||.|++||+..+..+... ..+..+|++++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~s~~fs 252 (371)
T d1k8kc_ 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVTFI 252 (371)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEE
T ss_pred cccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee--------ecccccceeeeec
Confidence 1 2345677888999999999999999999999999999988766532 2356789999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCcceeeEEE---------------------------------------eeeccCCceEE
Q 004410 530 PSDPSKVIVTSADSLVRVLCGENVVGKFKA---------------------------------------SAFRVAGSQMF 570 (755)
Q Consensus 530 p~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---------------------------------------~~~~~~~~v~~ 570 (755)
| ++.+|++ +.|+.+++|........... ....|.+.|++
T Consensus 253 ~-d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~ 330 (371)
T d1k8kc_ 253 T-ESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 330 (371)
T ss_dssp E-TTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred C-CCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEE
Confidence 9 7766665 55777777653221111000 00127778999
Q ss_pred EEEecCC----CEEEEEeCCCcEEEEEcCCCC
Q 004410 571 ATFTSDG----KHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 571 l~fspdg----~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
+++.+.+ ..|+|++.||.|+|||+++.+
T Consensus 331 i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred EEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 9998755 368999999999999997654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-32 Score=293.29 Aligned_cols=245 Identities=18% Similarity=0.276 Sum_probs=210.6
Q ss_pred cccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeec
Q 004410 282 AHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKS 361 (755)
Q Consensus 282 ~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 361 (755)
.|...|++|+|+|+|++||||+ ||.|+|||+.++.....+
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~--------------------------------------- 88 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV--------------------------------------- 88 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS---------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee---------------------------------------
Confidence 7999999999999999999998 899999999775422110
Q ss_pred CCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCcEEEEEEe
Q 004410 362 SDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDR--CLRVF-SHNNYVTSVAFN 437 (755)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~--~~~~~-~h~~~V~~i~fs 437 (755)
......+|.+.|.+++|+|++ +|++++.|++|++||+.... ....+ .|...|.+++|+
T Consensus 89 ------------------~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 89 ------------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp ------------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred ------------------EEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence 122345799999999999999 99999999999999987543 44444 488999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
| ++.++++++.|+.|++|++.++++. ....|...|++++|++++..+++++.||.|++||+++++.+...
T Consensus 151 ~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------- 221 (337)
T d1gxra_ 151 P-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------- 221 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccc--------
Confidence 9 9999999999999999999998877 46668889999999999999999999999999999998876432
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
.+...|++++|+| ++.++++++.|+.|++||....... .. ..|...|++++|+|+|++|++++.||.|++||+.+
T Consensus 222 -~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 222 -DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp -ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred -ccccceEEEEEcc-cccccceeccccccccccccccccc-cc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 2457899999999 8899999999999999999875543 22 67889999999999999999999999999999887
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 297 ~~ 298 (337)
T d1gxra_ 297 GA 298 (337)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-32 Score=296.50 Aligned_cols=297 Identities=20% Similarity=0.289 Sum_probs=227.6
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCc
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPS 330 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~ 330 (755)
+.+..++.+.+|+...... +. . ......+|.+.|+||+|+|||++||+|+ |+.|+|||+.+++.+..+........
T Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~-~-~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPRE-ID-V-ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp SEEECSSCEEEECTTSCCC-EE-E-EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred cccCCCCcEEEeCCCCCcc-ee-e-eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence 3566677888998653321 11 1 1123347999999999999999999987 89999999999987766543221100
Q ss_pred eeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCC
Q 004410 331 CLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADK 409 (755)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg 409 (755)
.. .........+|...|.+++|+|++ +|++++.||
T Consensus 108 ~~--------------------------------------------~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg 143 (388)
T d1erja_ 108 DP--------------------------------------------ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143 (388)
T ss_dssp -------------------------------------------------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred cc--------------------------------------------cccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence 00 001122345788999999999999 999999999
Q ss_pred cEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc-CCCeEEE
Q 004410 410 TVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP-DGKGGIV 487 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp-dg~~la~ 487 (755)
+|++||...++.+..+. |...|.++++++ ++..+++++.++.|++||+.+........+.....++.+.+ ++++|++
T Consensus 144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (388)
T d1erja_ 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222 (388)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEE
Confidence 99999999999988885 899999999999 99999999999999999999998886666666666666666 8899999
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCccee----------eE
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVG----------KF 557 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~----------~~ 557 (755)
|+.||.|++||+.++.......... .....|...|++++|+| ++.+|++++.|+.|++||+..... ..
T Consensus 223 ~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 300 (388)
T d1erja_ 223 GSLDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300 (388)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CE
T ss_pred EcCCCeEEEeecccCccceeecccc-ccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence 9999999999999988765543221 12335678899999999 899999999999999999765322 11
Q ss_pred EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 558 KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 558 ~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
......|...|++++|+|+|++|++|+.||.|++||+.+++
T Consensus 301 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341 (388)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred eeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 22335678899999999999999999999999999998775
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-33 Score=294.24 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=227.5
Q ss_pred ccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceee-ecccccEEEEEEecCCCEEEEEcCCC
Q 004410 228 LGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEF-LAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l-~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
.+.+.+|.+.|.+++|+|++++||+|+.||+|+|||+..+... +.+ .+|.+.|++++|+|+|+++ +++.|+
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-------~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~ 76 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-------RVFPDVHATMITGIKTTSKGDLF-TVSWDD 76 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------ECSSCSCSSCEEEEEECTTSCEE-EEETTT
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------EEEcCCCCCcEEEEEeeccceee-ccccee
Confidence 4578899999999999999999999999999999998754321 223 4799999999999999755 556789
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.|++|++...... ........
T Consensus 77 ~v~~~~~~~~~~~-----------------------------------------------------------~~~~~~~~ 97 (299)
T d1nr0a2 77 HLKVVPAGGSGVD-----------------------------------------------------------SSKAVANK 97 (299)
T ss_dssp EEEEECSSSSSSC-----------------------------------------------------------TTSCCEEE
T ss_pred eEEEeccCCcccc-----------------------------------------------------------cccccccc
Confidence 9999997543210 00111234
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE--
Q 004410 387 HSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-- 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-- 464 (755)
|...+.+++|++++.+++++.++.+++|+... . ........+++++|+| ++++|++|+.||.|++||+.+++..
T Consensus 98 ~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~-~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~ 173 (299)
T d1nr0a2 98 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--L-TEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEV 173 (299)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEETTE--E-EEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred cccccccccccccccccccccccccccccccc--c-cccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 67788999999999555566678999998542 2 2334566789999999 9999999999999999999988755
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
....|...|++++|+|++++|++++.+|.|++||+.++...... .....|...|++++|+| ++.+|++++.|+.
T Consensus 174 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~ 247 (299)
T d1nr0a2 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-----NSWTFHTAKVACVSWSP-DNVRLATGSLDNS 247 (299)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-----CCCCCCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccc-cccceEEEcCCCE
Confidence 45678889999999999999999999999999999877654321 12344678999999999 8999999999999
Q ss_pred EEEEECCcceeeEEEeeeccC-CceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 545 VRVLCGENVVGKFKASAFRVA-GSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~-~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
|+|||+.+...........|. ..+..+ +++++++|++++.|+.|+|||+.
T Consensus 248 i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred EEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence 999998875443332223333 455555 45677899999999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-31 Score=275.92 Aligned_cols=248 Identities=23% Similarity=0.369 Sum_probs=217.7
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
..|.||.+.|++|+|+|++++||||+.||+|+|||+.+++.
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~--------------------------------------- 51 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------------------------------- 51 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------------------------
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE---------------------------------------
Confidence 56899999999999999999999999999999999977653
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEE
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVA 435 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~ 435 (755)
+.++.+|...|.+++|++++ .++++..++.+.+|+....+....+ .|...+.++.
T Consensus 52 -----------------------~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (317)
T d1vyhc1 52 -----------------------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108 (317)
T ss_dssp -----------------------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred -----------------------EEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence 34567899999999999999 9999999999999999888877666 4899999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
|+| +++.+++++.|+.+++||+++++.+ .+..+...+.+++|+|++++|++++.||.|++|++.++.....+
T Consensus 109 ~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~------ 181 (317)
T d1vyhc1 109 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL------ 181 (317)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred ccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEE------
Confidence 999 9999999999999999999998776 56778899999999999999999999999999999998776432
Q ss_pred cccCCCCCeEEEEEcCC-------------------CCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 515 KKKLPGKRITGFQFSPS-------------------DPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~-------------------d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
..+...+..++|+|. .+.++++++.|+.|++|+..+....... ..|...|.+++|+|
T Consensus 182 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 257 (317)
T d1vyhc1 182 --REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHS 257 (317)
T ss_dssp --CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECS
T ss_pred --ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE--eCCCCCEEEEEECC
Confidence 234567778887763 3457999999999999999887665555 67899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC
Q 004410 576 DGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 576 dg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++++|++|+.||.|+|||+.+++
T Consensus 258 ~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 258 GGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCEEEEEECCCeEEEEECCCCc
Confidence 99999999999999999997654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.5e-31 Score=278.78 Aligned_cols=246 Identities=15% Similarity=0.233 Sum_probs=205.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC--CCc
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGT 307 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~--Dg~ 307 (755)
.+.+|.+.+.+++|+|+|++||+|+.||+|+||++......+ ...+.+|.+.|.+|+|+|++++|++++. +..
T Consensus 53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~ 127 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-----ccccccccCcccccccccccccccccccccccc
Confidence 456778889999999999999999999999999987654322 2457889999999999999999999986 456
Q ss_pred EEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC
Q 004410 308 VRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH 387 (755)
Q Consensus 308 I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh 387 (755)
++||++.+++. ..++.+|
T Consensus 128 ~~v~~~~~~~~--------------------------------------------------------------~~~l~~h 145 (311)
T d1nr0a1 128 GHVFLFDTGTS--------------------------------------------------------------NGNLTGQ 145 (311)
T ss_dssp EEEEETTTCCB--------------------------------------------------------------CBCCCCC
T ss_pred ccccccccccc--------------------------------------------------------------ccccccc
Confidence 99999876643 2345679
Q ss_pred CCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 388 SSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 388 ~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
...|.+++|+|++ .|++++.|+.|++||++++++...+. |...|+++.|+| ++++|++++.|+.|++||+.++..+
T Consensus 146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKT 224 (311)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ccccccccccccceeeecccccccccccccccccccccccccccccccccccCc-ccccccccccccccccccccccccc
Confidence 9999999999988 58889999999999999999988884 899999999999 9999999999999999999987765
Q ss_pred E--------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 465 D--------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 465 ~--------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
. ...|...|++++|+|++++|++|+.||.|+|||+++++++..+.. .. .....+.++.|++ ..|
T Consensus 225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~----~~-~~~~~~~~~~~~~---~~l 296 (311)
T d1nr0a1 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV----GT-RIEDQQLGIIWTK---QAL 296 (311)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----CS-SGGGCEEEEEECS---SCE
T ss_pred ccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC----CC-CccceEEEEEecC---CEE
Confidence 3 224678899999999999999999999999999999988765332 11 1122345566654 679
Q ss_pred EEEECCCcEEEEECC
Q 004410 537 IVTSADSLVRVLCGE 551 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~ 551 (755)
++++.||.|++||.+
T Consensus 297 ~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 297 VSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTCCEEEEETT
T ss_pred EEEECCCEEEEEeCC
Confidence 999999999999963
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-30 Score=266.91 Aligned_cols=326 Identities=19% Similarity=0.255 Sum_probs=237.3
Q ss_pred cccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC
Q 004410 225 LKKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE 304 (755)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~ 304 (755)
++..+.+++|.+.|.+ +++++|++||+|+.||+|+|||+.+.. ..+++.+|.+.|.+++|+|+ +|++|+.
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCCEEEEEeCCC--cccccee
Confidence 3455678899988864 578889999999999999999976543 34568899999999999875 9999999
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|+.+++|+....................... ......+..+..+.+++.... +....+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~d~~i~~~~~~~~----~~~~~~ 133 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH------------------EKRVVSGSRDATLRVWDIETG----QCLHVL 133 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE------------------TTEEEEEETTSEEEEEESSSC----CEEEEE
T ss_pred cccccccccccccceecccccceeEeeeecc------------------cccccccccceeEEEeecccc----cceeee
Confidence 9999999998876554443322211111110 011122233444444433221 122233
Q ss_pred cCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 385 QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
..+.... .........+++++.|+.|++||+...+++..+. |...+..+. + ++.+|++|+.||.|++||++.++.
T Consensus 134 ~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~~~~ 209 (342)
T d2ovrb2 134 MGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVETGNC 209 (342)
T ss_dssp ECCSSCE-EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTTCCE
T ss_pred ecccccc-eeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--C-CCCEEEEEeCCCeEEEeeccccee
Confidence 3333322 2223333488999999999999999999988874 666665554 4 678999999999999999999887
Q ss_pred E-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 464 V-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 464 ~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
+ ....|...+.+++++ +++|++|+.||.|++||+...+...... . ...+...+.++.+++ .++++++.|
T Consensus 210 ~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~-~~~~~~~~~~~~~~~---~~~~s~s~D 279 (342)
T d2ovrb2 210 IHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ----G-PNKHQSAVTCLQFNK---NFVITSSDD 279 (342)
T ss_dssp EEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC----S-TTSCSSCEEEEEECS---SEEEEEETT
T ss_pred eeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccc----c-cceeeeceeecccCC---CeeEEEcCC
Confidence 7 566778888877765 5699999999999999999877654321 1 234566778887765 799999999
Q ss_pred CcEEEEECCcceeeEEEe---eeccCCceEEEEEecCCCEEEEEeCCCc----EEEEEcCC
Q 004410 543 SLVRVLCGENVVGKFKAS---AFRVAGSQMFATFTSDGKHVVSPSEDSN----IYIWNYSN 596 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~---~~~~~~~v~~l~fspdg~~L~sgs~Dg~----I~iWd~~~ 596 (755)
|.|+|||+.+........ ..+|...|++++|+|++.+|++|+.||+ |++||++.
T Consensus 280 g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 999999998765444332 1356778999999999999999999985 99999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.3e-30 Score=271.89 Aligned_cols=327 Identities=17% Similarity=0.230 Sum_probs=235.9
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
...++.+|.+.+.. ++++++++||+|+.||+|+|||+.+.. ..+++.+|.+.|++|+|+|+ .+|++|+.|+
T Consensus 4 ~~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~ 74 (355)
T d1nexb2 4 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG-GILVSGSTDR 74 (355)
T ss_dssp EEEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred CcEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence 34568889887632 355678999999999999999976543 34578999999999999986 5899999999
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceec----------
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---------- 376 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 376 (755)
+|++|++............................ ..+.++.++.+.+|+......
T Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK--------------YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE--------------EEEEEETTSEEEEEECCC-----------CC
T ss_pred ccccccccccccccccccccccccccccccccccc--------------eeeeecCCCcEEEEEccCCceecccccccee
Confidence 99999999887766554433332222222111111 122333344444443321110
Q ss_pred ---------cCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEE
Q 004410 377 ---------LEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 377 ---------~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~ 445 (755)
....+.....|...+.... +++ .++++..|+.|++||+.+++.+.... +...+.++.|+| ++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 217 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCI 217 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEE
T ss_pred ccceeccccccceeeeeeeccccccccc--cccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeee
Confidence 0112233445666665544 445 89999999999999999999988875 788899999999 999999
Q ss_pred EEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeE
Q 004410 446 SGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRIT 524 (755)
Q Consensus 446 sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~ 524 (755)
+++.|+.|++||++++..+ .+..|...|.+++++ +++|++|+.||.|++||+++...... .|...+.
T Consensus 218 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~~~ 285 (355)
T d1nexb2 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS----------YHHTNLS 285 (355)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE----------EECTTCC
T ss_pred cccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceecc----------cccCCce
Confidence 9999999999999998877 577888999999986 47999999999999999998765422 1223444
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 525 GFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 525 ~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.+.+.+.++.+++++ .|+.|+|||+.+...... ...+|...|++++|+|+ .+|++++.||.++||.+
T Consensus 286 ~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~-~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 286 AITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA-NILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS-CTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE-EecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 444433266766655 589999999987544321 22568889999999987 57888999999777654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=5.2e-30 Score=271.24 Aligned_cols=292 Identities=18% Similarity=0.202 Sum_probs=217.9
Q ss_pred CcceeecCCCCeeEEeeCCC-eEEEEECCCCcccccccccceeeeccc-ccEEEEEEec--CCCEEEEEcCCCcEEEEEc
Q 004410 238 HGSATLKPGDHELTLGQRMR-RVRVHPVKKQSRELSSLYTGQEFLAHE-GSILTMKFSL--DGQYLASGGEDGTVRVWKV 313 (755)
Q Consensus 238 ~~~~~~spdg~~lasgs~dg-~V~Vw~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~fsp--dg~~LaSgs~Dg~I~vWdv 313 (755)
..+++|+|+++.||.++.+. .|+.|+..... ......+.+|. ..|++++|+| +|++||+|+.||+|+|||+
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-----~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~ 94 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-----VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 94 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCS-----SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-----ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence 45699999999999887654 35556543221 22334567774 6799999998 6789999999999999998
Q ss_pred cCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEE
Q 004410 314 IEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLD 393 (755)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~ 393 (755)
..+.....+.. .....+..|.++|.+
T Consensus 95 ~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~v~~ 120 (325)
T d1pgua1 95 TFDKESNSVEV------------------------------------------------------NVKSEFQVLAGPISD 120 (325)
T ss_dssp EEEGGGTEEEE------------------------------------------------------EEEEEEECCSSCEEE
T ss_pred cCCcceeeeec------------------------------------------------------ccccccccccCcEEE
Confidence 76543222110 012235678899999
Q ss_pred EEEcCCC-eEEEEe--CCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEE----
Q 004410 394 LSWSKNG-FLLSSS--ADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVD---- 465 (755)
Q Consensus 394 l~~s~~~-~L~s~s--~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~---- 465 (755)
++|++++ +|++++ .++.+++|+..+++++..+. |...|++++|+|....++++++.|+.|++||+...+...
T Consensus 121 v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~ 200 (325)
T d1pgua1 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200 (325)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred EEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccc
Confidence 9999999 666665 47789999999999998885 899999999999444568889999999999998877653
Q ss_pred eccCCcceEEEEEccC-CCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc
Q 004410 466 YTDIREIVSAVCYCPD-GKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL 544 (755)
Q Consensus 466 ~~~~~~~V~~v~~spd-g~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~ 544 (755)
...+...|++++|+|+ +.+|++++.||.|++||+++++.+.. +.++.......+.++.|. ++.+|++++.|+.
T Consensus 201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~----l~~~~~~v~~~~~s~~~~--dg~~l~s~s~D~~ 274 (325)
T d1pgua1 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY----IEDDQEPVQGGIFALSWL--DSQKFATVGADAT 274 (325)
T ss_dssp SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE----CCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred ccCCCCccEEeeeccccceeccccccccceeeeeecccccccc----ccccccccccceeeeecc--CCCEEEEEeCCCe
Confidence 3356678999999996 68899999999999999999887654 333333333445555554 6789999999999
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecC-CCEEEEEeCCCcEEEEEc
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSD-GKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd-g~~L~sgs~Dg~I~iWd~ 594 (755)
|+|||+.+...........+...+..+++.+. +.+|++++.||.|+|||+
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 275 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 99999987655444433444434444444332 358999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.5e-30 Score=278.82 Aligned_cols=250 Identities=16% Similarity=0.218 Sum_probs=204.2
Q ss_pred cccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCC
Q 004410 284 EGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSD 363 (755)
Q Consensus 284 ~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 363 (755)
..+|+|++|+|||++||+|+.||.|+||++.+++..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-------------------------------------------- 42 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------------------------------- 42 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE--------------------------------------------
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE--------------------------------------------
Confidence 468999999999999999999999999998765421
Q ss_pred ceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeC
Q 004410 364 LTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPV 439 (755)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~ 439 (755)
.+..+.+|.+.|.+|+|+|++ +|++++.|++|+|||+.++.....+ .|...|++++|+|
T Consensus 43 ----------------~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p- 105 (371)
T d1k8kc_ 43 ----------------QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP- 105 (371)
T ss_dssp ----------------EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-
T ss_pred ----------------EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-
Confidence 145578999999999999999 9999999999999999888765554 4788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeE-----EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeE----
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQV-----VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQI---- 510 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~-----~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~---- 510 (755)
++++|++|+.|++|++|++..... .....|...|.+++|+|++++|++|+.||.|++||+...........
T Consensus 106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~ 185 (371)
T d1k8kc_ 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185 (371)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccc
Confidence 999999999999999999876431 13456788999999999999999999999999999875432211100
Q ss_pred ------EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe
Q 004410 511 ------CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS 584 (755)
Q Consensus 511 ------~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs 584 (755)
.+......+...|++++|+| ++.+|++++.|+.|++||.......... ..|..+|.+++|+|++++|++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~s~~fs~d~~~la~g- 261 (371)
T d1k8kc_ 186 SKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVTFITESSLVAAG- 261 (371)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEEEEETTEEEEEE-
T ss_pred ccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeee--ecccccceeeeecCCCCEEEEE-
Confidence 00111234677899999999 8899999999999999999876655544 6688899999999999877765
Q ss_pred CCCcEEEEEcCCCC
Q 004410 585 EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~ 598 (755)
.|+.+++|......
T Consensus 262 ~d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 262 HDCFPVLFTYDSAA 275 (371)
T ss_dssp TTSSCEEEEEETTT
T ss_pred cCCceEEEEeeCCC
Confidence 57888888776543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3e-29 Score=260.61 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=201.8
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+.++||.+.|++|+|+|||++||||+.||+|+|||+.+++.+..+
T Consensus 5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~---------------------------------- 50 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF---------------------------------- 50 (299)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS----------------------------------
T ss_pred ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----------------------------------
Confidence 4678999999999999999999999999999999999887643221
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeE----EEEEecCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRC----LRVFSHNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~----~~~~~h~~~V~ 432 (755)
..+|...|.+++|+|++.+++++.|+.|++|++..... .....+...+.
T Consensus 51 ---------------------------~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d1nr0a2 51 ---------------------------PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 103 (299)
T ss_dssp ---------------------------SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred ---------------------------cCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc
Confidence 13588999999999999888899999999999865432 12224788899
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
+++|+| +++++++++ ++.+++|+...... ......+.+++|+|++++|++|+.||.|++||++++.......
T Consensus 104 ~~~~s~-~g~~~~~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~--- 175 (299)
T d1nr0a2 104 GLAVSA-DGDIAVAAC-YKHIAIYSHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT--- 175 (299)
T ss_dssp EEEECT-TSSCEEEEE-SSEEEEEETTEEEE---EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE---
T ss_pred cccccc-ccccccccc-cccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccc---
Confidence 999999 888776665 57899999654322 2344567899999999999999999999999999887543221
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeE-EEeeeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKF-KASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
..|...|++++|+| ++.+|++++.|+.|++||..+..... ......|...|++++|+|++++|++|+.||.|+|
T Consensus 176 ----~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~i 250 (299)
T d1nr0a2 176 ----IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250 (299)
T ss_dssp ----EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEE
Confidence 23567899999999 88999999999999999987643322 1222457889999999999999999999999999
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
||+.++.
T Consensus 251 wd~~~~~ 257 (299)
T d1nr0a2 251 WNMNKPS 257 (299)
T ss_dssp EETTCTT
T ss_pred EECCCCC
Confidence 9998875
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.4e-27 Score=250.77 Aligned_cols=251 Identities=19% Similarity=0.350 Sum_probs=212.7
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..++|+||.+.|++|+|+|++++||||+.||+|+|||+.+++.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~------------------------------------- 89 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK------------------------------------- 89 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------------------------------------
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-------------------------------------
Confidence 3467899999999999999999999999999999999987754
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----eEEEEEe-cCC
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGID----RCLRVFS-HNN 429 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~----~~~~~~~-h~~ 429 (755)
+..+.+|...|.+++|+|++ ++++++.|+.|++|+.... .....+. |..
T Consensus 90 -------------------------~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 144 (340)
T d1tbga_ 90 -------------------------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp -------------------------EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSS
T ss_pred -------------------------EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccc
Confidence 33456789999999999999 9999999999999997654 3344443 566
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
........ .+..++....|.....+........ ....+...+....+.+.+.++++|+.|+.|++||+++++....
T Consensus 145 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~- 221 (340)
T d1tbga_ 145 YLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT- 221 (340)
T ss_dssp CEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-
T ss_pred cccccccc--cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEE-
Confidence 66655554 4678888899999999998877665 5666777899999999999999999999999999999987653
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCc
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSN 588 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~ 588 (755)
...|...|++++|+| ++.+|++++.|+.|++|+..............+...|.+++|+|++++|++|+.||.
T Consensus 222 -------~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~ 293 (340)
T d1tbga_ 222 -------FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC
T ss_pred -------EeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE
Confidence 234678999999999 889999999999999999988766655544667788999999999999999999999
Q ss_pred EEEEEcCCCCc
Q 004410 589 IYIWNYSNQDK 599 (755)
Q Consensus 589 I~iWd~~~~~~ 599 (755)
|+|||+.+++.
T Consensus 294 i~iwd~~~~~~ 304 (340)
T d1tbga_ 294 CNVWDALKADR 304 (340)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 99999988763
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-28 Score=254.67 Aligned_cols=271 Identities=18% Similarity=0.209 Sum_probs=220.1
Q ss_pred ccccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC
Q 004410 226 KKLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED 305 (755)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D 305 (755)
+.++++.+|...|.+++|+| |++|+.||+|++|+..+ ...+|...|.+++|++++ .|++++.|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~~-~~~s~s~D 66 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKAQ-EYSSISWD 66 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCCC-eEEEEeec
Confidence 56788999999999999998 99999999999999653 235799999999999765 57899999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
++|++|++...+
T Consensus 67 ~~v~~w~~~~~~-------------------------------------------------------------------- 78 (287)
T d1pgua2 67 DTLKVNGITKHE-------------------------------------------------------------------- 78 (287)
T ss_dssp TEEEETTEEEEE--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 999999864321
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-cEEEEEcCCCeEE
Q 004410 386 GHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-KVRIWEVRRCQVV 464 (755)
Q Consensus 386 gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-~V~iwdl~~~~~~ 464 (755)
+...+..+++++++.++..+.++.+.+|+..+++.+..+.+...+.+ +++ +++.+++++.|+ .|++|++...+..
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~ 154 (287)
T d1pgua2 79 -FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--VSL-SQNYVAVGLEEGNTIQVFKLSDLEVS 154 (287)
T ss_dssp -CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE--EEE-CSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred -cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeee--eec-cCcceeeeccccceeeeeecccccee
Confidence 12345678888888666677788899999999999999887766654 566 677887777765 6999999876655
Q ss_pred E--eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC---------CC
Q 004410 465 D--YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS---------DP 533 (755)
Q Consensus 465 ~--~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~---------d~ 533 (755)
. ...+...+++++|+|++++|++|+.||.|++||+.++..... ....|...|++++|+|. ++
T Consensus 155 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-------~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 227 (287)
T d1pgua2 155 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS-------RWAFRTSKINAISWKPAEKGANEEEIEE 227 (287)
T ss_dssp EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC-------CSCCCSSCEEEEEECCCC------CCSC
T ss_pred eeeeeccCCceeEEEeccCccccccccccccccceeecccccccc-------cccccccccceeeecccccccccccCCC
Confidence 3 334677899999999999999999999999999998876432 23457789999999983 45
Q ss_pred CEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEc
Q 004410 534 SKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNY 594 (755)
Q Consensus 534 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~ 594 (755)
.++++++.|+.|+|||.......... ..+|...|++++|+|++ .|++++.|+.|++|++
T Consensus 228 ~~l~sgs~D~~i~iw~~~~~~~~~~~-~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 228 DLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CeeEeecCCCeEEEEECCCCCeEEEE-eCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 78999999999999998764444333 25799999999999986 6899999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=253.27 Aligned_cols=247 Identities=17% Similarity=0.181 Sum_probs=194.1
Q ss_pred ccCcceeecC--CCCeeEEeeCCCeEEEEECCCCccccc-ccccceeeecccccEEEEEEecCCCEEEEEcC--CCcEEE
Q 004410 236 DRHGSATLKP--GDHELTLGQRMRRVRVHPVKKQSRELS-SLYTGQEFLAHEGSILTMKFSLDGQYLASGGE--DGTVRV 310 (755)
Q Consensus 236 ~~~~~~~~sp--dg~~lasgs~dg~V~Vw~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~--Dg~I~v 310 (755)
..+.+++|+| ++.+||+|+.||+|+||++........ .......+..|.++|.+++|+++|++|++++. ++.+++
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence 4577899998 567999999999999999764432211 11222456779999999999999999988764 678999
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
|++.+++. +..+.+|...
T Consensus 144 ~~~~~~~~--------------------------------------------------------------~~~~~~h~~~ 161 (325)
T d1pgua1 144 ISWDSGNS--------------------------------------------------------------LGEVSGHSQR 161 (325)
T ss_dssp EETTTCCE--------------------------------------------------------------EEECCSCSSC
T ss_pred Eeeccccc--------------------------------------------------------------ceeeeecccc
Confidence 99876643 3445679999
Q ss_pred EEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe----cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 391 VLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS----HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 391 V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~----h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
|.+++|+|++ .+++++.|+.|++||+...+....+. |...|++++|+|..+.+|++++.|+.|++||+++++.+
T Consensus 162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~ 241 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241 (325)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence 9999999988 57889999999999999888777663 77889999999955789999999999999999999877
Q ss_pred -EeccCCcceEEEEEc---cCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 465 -DYTDIREIVSAVCYC---PDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 465 -~~~~~~~~V~~v~~s---pdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
.+..|...+..+.|+ |+|++|++++.|+.|+|||+++++++..... + .+...+..+++.+....+|++++
T Consensus 242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~s~s 315 (325)
T d1pgua1 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL----D--KQQLGNQQVGVVATGNGRIISLS 315 (325)
T ss_dssp EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC----C--TTCGGGCEEEEEEEETTEEEEEE
T ss_pred ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe----c--CCcccCeEEEEEECCCCEEEEEE
Confidence 455666666555555 6899999999999999999999988765332 1 12223334444433456899999
Q ss_pred CCCcEEEEEC
Q 004410 541 ADSLVRVLCG 550 (755)
Q Consensus 541 ~Dg~I~iwd~ 550 (755)
.||.|+|||+
T Consensus 316 ~dg~i~vwdl 325 (325)
T d1pgua1 316 LDGTLNFYEL 325 (325)
T ss_dssp TTSCEEEEET
T ss_pred CCCEEEEEEC
Confidence 9999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.9e-27 Score=239.48 Aligned_cols=262 Identities=21% Similarity=0.379 Sum_probs=199.6
Q ss_pred eecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeee
Q 004410 242 TLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDG 321 (755)
Q Consensus 242 ~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~ 321 (755)
+++++|++||+|+.||+|+|||+.... ..+++.+|.+.|++|+| ++++|++|+.|+.|++|++..+.....
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence 466789999999999999999976432 44678899999999987 678999999999999999987754322
Q ss_pred eecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCe
Q 004410 322 FDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGF 401 (755)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~ 401 (755)
.. .+... ........+.
T Consensus 91 ~~--------------------------------------------------------------~~~~~-~~~~~~~~~~ 107 (293)
T d1p22a2 91 LI--------------------------------------------------------------HHCEA-VLHLRFNNGM 107 (293)
T ss_dssp EC--------------------------------------------------------------CCCSC-EEEEECCTTE
T ss_pred cc--------------------------------------------------------------ccccc-cccccccccc
Confidence 11 11111 1122233348
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEE----ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEE
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVF----SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAV 476 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~----~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v 476 (755)
++++..++.+++|+..+....... .|...|.++.+.+ ..+++++.|+.|++||+++++.+ .+..+...+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~ 184 (293)
T d1p22a2 108 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184 (293)
T ss_dssp EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred eeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccc
Confidence 899999999999998876543322 4788888887754 68899999999999999998877 566677778777
Q ss_pred EEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcce--
Q 004410 477 CYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVV-- 554 (755)
Q Consensus 477 ~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~-- 554 (755)
.+ ++..+++++.||.|++||+++...+... ..+...+.. +.+ +..+|++++.||.|++||+....
T Consensus 185 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~v~~--~~~-~~~~l~sg~~dg~i~iwd~~~~~~~ 251 (293)
T d1p22a2 185 QY--RDRLVVSGSSDNTIRLWDIECGACLRVL--------EGHEELVRC--IRF-DNKRIVSGAYDGKIKVWDLVAALDP 251 (293)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEE--EEC-CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred cC--CCCeEEEecCCCEEEEEecccceeeeee--------cccceeeee--ccc-cceEEEEEcCCCEEEEEECCCCccc
Confidence 66 4678999999999999999988776432 223445554 444 67899999999999999965321
Q ss_pred -----eeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 555 -----GKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 555 -----~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
........+|.+.|++++| ++.+|+||+.||+|+|||
T Consensus 252 ~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 252 RAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred cccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 1122233678999999998 567899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1e-26 Score=244.68 Aligned_cols=282 Identities=20% Similarity=0.283 Sum_probs=210.9
Q ss_pred ceeeecccccE-EEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 277 GQEFLAHEGSI-LTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 277 ~~~l~~H~~~V-~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
..+|+||.+.| +|++| ++++||||+.||+|+|||+.+++.+..+..+...+.++.|.++.
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----------------- 65 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----------------- 65 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-----------------
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-----------------
Confidence 35689999886 55555 68899999999999999999999999998888777777775432
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEec--CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe------
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ--GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS------ 426 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~------ 426 (755)
..+.++.++.+.+|....... ..... .+...+..+.+.+++ .+++++.|+.|++||+.+...+....
T Consensus 66 ~l~s~s~D~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 141 (355)
T d1nexb2 66 ILVSGSTDRTVRVWDIKKGCC----THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 141 (355)
T ss_dssp EEEEEETTCCEEEEETTTTEE----EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC
T ss_pred EEEEEeccccccccccccccc----ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec
Confidence 123445566666665543221 12222 233345566777887 89999999999999998766543321
Q ss_pred ------------------cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEE
Q 004410 427 ------------------HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIV 487 (755)
Q Consensus 427 ------------------h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~ 487 (755)
|...+. .+.+ ++++++++..|+.|++||+.+++.+ ....+...+.++.++|++..+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (355)
T d1nexb2 142 LVFHTPEENPYFVGVLRGHMASVR--TVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218 (355)
T ss_dssp EEESCTTTCTTEEEEEECCSSCEE--EEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred cceeccccccceeeeeeecccccc--cccc-ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeec
Confidence 223333 3445 7799999999999999999998877 45667888999999999999999
Q ss_pred EeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCc
Q 004410 488 GTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGS 567 (755)
Q Consensus 488 gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 567 (755)
++.||.|++||+.++..+.. ...|...|+++++++ ++|++++.||.|++||..+....+.. |...
T Consensus 219 ~~~d~~i~i~d~~~~~~~~~--------~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~ 283 (355)
T d1nexb2 219 ASMDTTIRIWDLENGELMYT--------LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY----HHTN 283 (355)
T ss_dssp EETTSCEEEEETTTCCEEEE--------ECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEE----ECTT
T ss_pred ccccceEEeeeccccccccc--------ccccccccccccccc---ceeeeeecccccccccccccceeccc----ccCC
Confidence 99999999999999887653 234677899999976 79999999999999999987766554 3344
Q ss_pred eEE-EEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 568 QMF-ATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 568 v~~-l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
+.. .++++++++|++|+ |+.|+|||+++++..
T Consensus 284 ~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 284 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316 (355)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred ceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence 444 45677888777665 899999999998744
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.5e-27 Score=247.44 Aligned_cols=300 Identities=10% Similarity=0.083 Sum_probs=215.6
Q ss_pred cccceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecC-CCEEEEEcCC
Q 004410 227 KLGAMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLD-GQYLASGGED 305 (755)
Q Consensus 227 ~~~~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspd-g~~LaSgs~D 305 (755)
.+.....|.+.|.+++|+|++++||+|+.||+|+||++....... ......+|.++|.+++|+|+ +.+|++|+.|
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d 78 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce----EEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence 344567788999999999999999999999999999976543211 11233479999999999986 4689999999
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
|.|++|++.......... .
T Consensus 79 ~~v~~w~~~~~~~~~~~~-------------------------------------------------------------~ 97 (342)
T d1yfqa_ 79 GEILKVDLIGSPSFQALT-------------------------------------------------------------N 97 (342)
T ss_dssp SCEEEECSSSSSSEEECB-------------------------------------------------------------S
T ss_pred cceeeeeccccccccccc-------------------------------------------------------------c
Confidence 999999987664322111 1
Q ss_pred CCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEE----Ee---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEE
Q 004410 386 GHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRV----FS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWE 457 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~----~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwd 457 (755)
.+........+.++. .+++++.++++++||++....... .. .......+.+.+ .++.+++++.|+.|++||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~ 176 (342)
T d1yfqa_ 98 NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFR 176 (342)
T ss_dssp CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEE
T ss_pred cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEe
Confidence 122223334444445 999999999999999864332222 21 233455667777 889999999999999999
Q ss_pred cCCCeE----EEeccCCcceEEEEEcc-CCCeEEEEeCCCcEEEEECCCCeEeeeee----E---EecccccCCCCCeEE
Q 004410 458 VRRCQV----VDYTDIREIVSAVCYCP-DGKGGIVGTMTGNCRFYDIKDNQLYQQNQ----I---CLQGKKKLPGKRITG 525 (755)
Q Consensus 458 l~~~~~----~~~~~~~~~V~~v~~sp-dg~~la~gs~dg~I~iwD~~~~~~~~~~~----~---~~~~~~~~~~~~I~~ 525 (755)
+..... .........+.+..+.+ ++..+++++.||.+.+|++.......... . ........+...+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (342)
T d1yfqa_ 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp SSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred cccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence 986542 23344445566655554 77899999999999999987543321110 0 011112345667999
Q ss_pred EEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 526 FQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 526 v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
++|+| ++.+|++|+.||.|+|||+.+....... .+...+..++|+|+|++|++|+.|+.+++|....
T Consensus 257 l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~---~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 257 IEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF---AKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp EEECT-TTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred EEecC-CccEEEEECCCCEEEEEECCCCcEEEEe---cCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 99999 8899999999999999999886554432 2334566788999999999999999999887643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5e-27 Score=245.18 Aligned_cols=259 Identities=15% Similarity=0.115 Sum_probs=197.7
Q ss_pred ceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeee
Q 004410 277 GQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTK 356 (755)
Q Consensus 277 ~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (755)
.+..++|++.|++|+|+|++++||+|+.||+|+|||+.++.....
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~----------------------------------- 48 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------------------------- 48 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE-----------------------------------
Confidence 455789999999999999999999999999999999876542111
Q ss_pred eeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcEE
Q 004410 357 SLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYVT 432 (755)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~ 432 (755)
+....+|...|.+++|++++ +|++|+.|++|++|++.......... +.....
T Consensus 49 ------------------------~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 104 (342)
T d1yfqa_ 49 ------------------------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104 (342)
T ss_dssp ------------------------EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCE
T ss_pred ------------------------EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccc
Confidence 12234699999999999875 89999999999999998887766664 344445
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEEcCCCe----EE-Eec--cCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEe
Q 004410 433 SVAFNPVDDNYFISGSIDGKVRIWEVRRCQ----VV-DYT--DIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLY 505 (755)
Q Consensus 433 ~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~----~~-~~~--~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~ 505 (755)
...+.+ +...+++++.|+.+++||++... .. ... ........+.+.+++..+++++.||.|++||+......
T Consensus 105 ~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 183 (342)
T d1yfqa_ 105 CRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred cccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc
Confidence 555666 88999999999999999986532 11 111 12234556778889999999999999999999876654
Q ss_pred eeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceee--------EE-----EeeeccCCceEEEE
Q 004410 506 QQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGK--------FK-----ASAFRVAGSQMFAT 572 (755)
Q Consensus 506 ~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~--------~~-----~~~~~~~~~v~~l~ 572 (755)
..... .......+....+.+.++..+++++.||.+.+|+....... .. .....|...+++++
T Consensus 184 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 184 NGTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp CCEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred ceeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEE
Confidence 33222 12234567777777778899999999999999986542111 11 01134566789999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 573 FTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 573 fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|+|++++|+||+.||.|+|||+.++++.
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l 286 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ecCCccEEEEECCCCEEEEEECCCCcEE
Confidence 9999999999999999999999988744
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=9.1e-26 Score=239.28 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=215.1
Q ss_pred eeecC-CCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC--cEEEEEccCCe
Q 004410 241 ATLKP-GDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG--TVRVWKVIEHE 317 (755)
Q Consensus 241 ~~~sp-dg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg--~I~vWdv~~~~ 317 (755)
-.||| ||+++|+++. |.|+||+...+.. .+ .+|.+.|.+++|+|||++|++++.+. .|++||+.+++
T Consensus 8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~-------~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~ 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYV-------LK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77 (360)
T ss_dssp EEEEECGGGCEEEEET-TEEEEECTTSSBE-------EE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccCCCCCEEEEEEC-CeEEEEECCCCcE-------EE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence 56999 9999998865 7999999865432 11 26899999999999999999877654 79999987764
Q ss_pred eeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEc
Q 004410 318 RLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWS 397 (755)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s 397 (755)
. ..+..|...|.+++|+
T Consensus 78 ~---------------------------------------------------------------~~~~~~~~~v~~~~~s 94 (360)
T d1k32a3 78 A---------------------------------------------------------------EKFEENLGNVFAMGVD 94 (360)
T ss_dssp E---------------------------------------------------------------EECCCCCCSEEEEEEC
T ss_pred E---------------------------------------------------------------EEeeCCCceEEeeeec
Confidence 2 3345789999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEe----------CCCcEEEEEcCCCeEEE
Q 004410 398 KNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGS----------IDGKVRIWEVRRCQVVD 465 (755)
Q Consensus 398 ~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs----------~Dg~V~iwdl~~~~~~~ 465 (755)
|++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+. .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 999 99999999999999999999988875 788899999999 999998654 34569999999999998
Q ss_pred eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeee-----eEEecc------------c-------------
Q 004410 466 YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQN-----QICLQG------------K------------- 515 (755)
Q Consensus 466 ~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~-----~~~~~~------------~------------- 515 (755)
...+...+..++|+|||+.|++++.++.+.+||.......... .+.+.. .
T Consensus 174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 8888899999999999999999999999999997654332110 000000 0
Q ss_pred -----ccCCCCCeEEEEEcCCCCC-------------EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCC
Q 004410 516 -----KKLPGKRITGFQFSPSDPS-------------KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDG 577 (755)
Q Consensus 516 -----~~~~~~~I~~v~fsp~d~~-------------~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg 577 (755)
..........+...+ ++. +++.++.++.|++||..+.... .+.+.|.+++|+|||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~~v~~~~~SpDG 326 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------EVKNNLTDLRLSADR 326 (360)
T ss_dssp GGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE------EEEEEEEEEEECTTS
T ss_pred cceeecccCcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE------EecCCcCEEEECCCC
Confidence 000112233344443 221 2344556788999998774322 234568999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcc
Q 004410 578 KHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 578 ~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
++|++++.||.|++||+++++.+
T Consensus 327 ~~l~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 327 KTVMVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp CEEEEEETTSCEEEEESSCTTSC
T ss_pred CEEEEEECCCeEEEEECCCCCcc
Confidence 99999999999999999988743
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-25 Score=243.94 Aligned_cols=336 Identities=10% Similarity=0.050 Sum_probs=210.6
Q ss_pred ceeeeeccCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEE------ec-CCCEEEEE
Q 004410 230 AMARIIDRHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKF------SL-DGQYLASG 302 (755)
Q Consensus 230 ~~~~~~~~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~f------sp-dg~~LaSg 302 (755)
..++|...|.++++++ +++++++.|++|+||+.......... ........|...+..+.. +. ++.+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK-DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG-GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc-ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 3456777888888764 69999999999999997654332211 111223345544433332 11 34578899
Q ss_pred cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEE--eecCcceeeeeeeeecCCceEEEeCCcceec----
Q 004410 303 GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPI--DVDKEKIDKTKSLRKSSDLTCVVLPPKVFRL---- 376 (755)
Q Consensus 303 s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 376 (755)
+.||.|++|++........+......... .......+..+ ...............+.++.+.+|+......
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLD---SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSC---TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred eCCCcEEEEEccCCCceeeeeccccceee---eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 99999999998655432221110000000 00000011111 1111112223344555666776665321110
Q ss_pred ---c-------CccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeC
Q 004410 377 ---L-------EKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPV 439 (755)
Q Consensus 377 ---~-------~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~ 439 (755)
. .........+...+.+++|+|+++|++|+.|++|+|||+.+++++..+. |...|++++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp- 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP- 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-
Confidence 0 0111222345667899999999999999999999999999999887663 889999999999
Q ss_pred CCCEEEEEeCCCc---EEEEEcCCCeEEEe--------------ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCC
Q 004410 440 DDNYFISGSIDGK---VRIWEVRRCQVVDY--------------TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDN 502 (755)
Q Consensus 440 d~~~l~sgs~Dg~---V~iwdl~~~~~~~~--------------~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~ 502 (755)
++++|++|+.|++ |++||+.+++.+.. .+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999999975 89999998876632 368899999999999999999999999999999999
Q ss_pred eEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEE
Q 004410 503 QLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVS 582 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~s 582 (755)
+++..+ .++...-......++|+| ++..+++++ ...++..... ... .........|++
T Consensus 322 ~~~~~l----~gH~~~v~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~----------~~~----~~~~~~~~~~~~ 379 (393)
T d1sq9a_ 322 ERITTL----NMHCDDIEIEEDILAVDE-HGDSLAEPG---VFDVKFLKKG----------WRS----GMGADLNESLCC 379 (393)
T ss_dssp EEEEEE----ECCGGGCSSGGGCCCBCT-TSCBCSSCC---EEEEEEECTT----------TSB----STTCTTSCEEEE
T ss_pred CEEEEE----CCcCCcccCCccEEEECC-CCCEEEEcc---cceEEECccC----------cee----ccccCCCCEEEE
Confidence 887653 333222222334577888 555554332 1111111110 000 000123467999
Q ss_pred EeCCCcEEEEEc
Q 004410 583 PSEDSNIYIWNY 594 (755)
Q Consensus 583 gs~Dg~I~iWd~ 594 (755)
++.|+.|++|.-
T Consensus 380 ~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 380 VCLDRSIRWFRE 391 (393)
T ss_dssp EETTTEEEEEEE
T ss_pred EEcCCeEEEEeC
Confidence 999999999963
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.5e-24 Score=222.30 Aligned_cols=284 Identities=18% Similarity=0.289 Sum_probs=209.9
Q ss_pred cccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCccee
Q 004410 274 LYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKID 353 (755)
Q Consensus 274 ~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (755)
+...+.|+||.+.|.+ +++++|++||||+.||+|+|||+.+++.+..+..+...+.++.+.++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---------------- 68 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---------------- 68 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT----------------
T ss_pred CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC----------------
Confidence 4455679999999865 46778999999999999999999999998888777666665555421
Q ss_pred eeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEE
Q 004410 354 KTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTS 433 (755)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~ 433 (755)
..+.++.+..+..|...... .......+...+......+ ..++.+..|+.|.+|+..+++....+........
T Consensus 69 --~l~s~s~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
T d2ovrb2 69 --IIISGSTDRTLKVWNAETGE----CIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141 (342)
T ss_dssp --EEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred --ccccceeccccccccccccc----ceecccccceeEeeeeccc-ccccccccceeEEEeecccccceeeeecccccce
Confidence 23344556666666544322 1233344555555554443 3778889999999999999998888764444433
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEe
Q 004410 434 VAFNPVDDNYFISGSIDGKVRIWEVRRCQVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 434 i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
. +.+ ...++++++.|+.|++||+.....+ .+..|...+.. +.+++.+|++|+.||.|++||++.++.+..
T Consensus 142 ~-~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~----- 212 (342)
T d2ovrb2 142 C-VQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHT----- 212 (342)
T ss_dssp E-EEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEE-----
T ss_pred e-ecc-ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeE-----
Confidence 3 334 6788999999999999999988876 45556555554 455889999999999999999999887653
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeCCCcEEE
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSEDSNIYI 591 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~i 591 (755)
...|...+.++.+++ .+|++++.|+.|++||........... ...|...+.++.+ +++++++|+.||.|+|
T Consensus 213 ---~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~i 284 (342)
T d2ovrb2 213 ---LTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKL 284 (342)
T ss_dssp ---ECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEE
T ss_pred ---ecccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEE
Confidence 234566788888865 699999999999999988765544432 1234555665555 5679999999999999
Q ss_pred EEcCCCC
Q 004410 592 WNYSNQD 598 (755)
Q Consensus 592 Wd~~~~~ 598 (755)
||+.+++
T Consensus 285 wd~~tg~ 291 (342)
T d2ovrb2 285 WDLKTGE 291 (342)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 9998876
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.9e-25 Score=239.65 Aligned_cols=259 Identities=13% Similarity=0.170 Sum_probs=184.8
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
...++|.+.|++|+++ +++|+||+.|++|+|||..+.+......
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~---------------------------------- 51 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKD---------------------------------- 51 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGG----------------------------------
T ss_pred ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccc----------------------------------
Confidence 3457999999999986 4699999999999999976543210000
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCE------EEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEE----E-E
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV------LDLSWSKNG--FLLSSSADKTVRLWQVGIDRCL----R-V 424 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V------~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~----~-~ 424 (755)
.......|...+ ..+...... .+++++.||.|++|++...... . .
T Consensus 52 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~ 109 (393)
T d1sq9a_ 52 ----------------------KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109 (393)
T ss_dssp ----------------------GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred ----------------------eeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccc
Confidence 000111122222 122222222 6778999999999987533211 1 1
Q ss_pred E------ecCCcEEEEEEeeC----CCCEEEEEeCCCcEEEEEcCCCe---------------EE----EeccCCcceEE
Q 004410 425 F------SHNNYVTSVAFNPV----DDNYFISGSIDGKVRIWEVRRCQ---------------VV----DYTDIREIVSA 475 (755)
Q Consensus 425 ~------~h~~~V~~i~fsp~----d~~~l~sgs~Dg~V~iwdl~~~~---------------~~----~~~~~~~~V~~ 475 (755)
. .+...+..++|.+. .+.++++++.||.+++|++.... .. ....+...+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (393)
T d1sq9a_ 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189 (393)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCE
T ss_pred cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEE
Confidence 1 15566788888772 24689999999999999985321 01 12234456889
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCc---EEEEECCc
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSL---VRVLCGEN 552 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~---I~iwd~~~ 552 (755)
++|+|++ +|++|+.||+|++||+.+++.+.... .......|...|++++|+| ++.+|++++.|++ |++||..+
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~--~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~ 265 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNFE--SQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF 265 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--CCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTT
T ss_pred EEECCCC-EEEEEeCCCcEEEEeecccccccccc--cccccccccceEEEccccc-ccceeeeecCCCCcceeeeccccc
Confidence 9999998 88999999999999999988765432 2222345788999999999 9999999999875 89999886
Q ss_pred ceeeEEE-----------eeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 553 VVGKFKA-----------SAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 553 ~~~~~~~-----------~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
....... ...+|...|++++|+||+++|+||+.|++|+|||+.+++
T Consensus 266 g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence 5433322 124689999999999999999999999999999999886
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.6e-23 Score=214.01 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=185.7
Q ss_pred cceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeee
Q 004410 276 TGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKT 355 (755)
Q Consensus 276 ~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (755)
+.++|.||.++|++|+|+| |+||+.||+|++||+.++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------------- 41 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------------- 41 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE---------------------------------------
T ss_pred eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC---------------------------------------
Confidence 4467899999999999987 999999999999987432
Q ss_pred eeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEE
Q 004410 356 KSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVA 435 (755)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~ 435 (755)
..+|...|.++++++++.+++++.|++|++|++.. ......+.++.
T Consensus 42 ----------------------------~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~------~~~~~~~~~~~ 87 (287)
T d1pgua2 42 ----------------------------HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK------HEFGSQPKVAS 87 (287)
T ss_dssp ----------------------------ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE------EECSSCEEEEE
T ss_pred ----------------------------CCCCCCCEEEEEecCCCeEEEEeeccccccccccc------cccccceeeee
Confidence 24688999999999888899999999999999743 23456678888
Q ss_pred EeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC-cEEEEECCCCeEeeeeeEEecc
Q 004410 436 FNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG-NCRFYDIKDNQLYQQNQICLQG 514 (755)
Q Consensus 436 fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg-~I~iwD~~~~~~~~~~~~~~~~ 514 (755)
+++ ++..+++ +.++.+.+|+..+++.+........+ .++++++..+++++.++ .+++|++.........
T Consensus 88 ~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~------ 157 (287)
T d1pgua2 88 ANN-DGFTAVL-TNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL------ 157 (287)
T ss_dssp ECS-SSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC------
T ss_pred ecc-CCceEEE-eecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeee------
Confidence 887 6555554 56777899999998887655555544 45677888999988876 6999999765543321
Q ss_pred cccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecC----------CCEEEEEe
Q 004410 515 KKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSD----------GKHVVSPS 584 (755)
Q Consensus 515 ~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspd----------g~~L~sgs 584 (755)
...+...+++++|+| ++.+|++++.|+.|++||..+...... ....|...|.+++|+|+ +.+|++|+
T Consensus 158 -~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 158 -KTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTS-RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp -SSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEC-CSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred -eeccCCceeEEEecc-Cccccccccccccccceeecccccccc-cccccccccceeeecccccccccccCCCCeeEeec
Confidence 223556899999999 899999999999999999987654432 22568899999999874 56899999
Q ss_pred CCCcEEEEEcCCCC
Q 004410 585 EDSNIYIWNYSNQD 598 (755)
Q Consensus 585 ~Dg~I~iWd~~~~~ 598 (755)
.|+.|+|||+.++.
T Consensus 235 ~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 235 LDTNIFIYSVKRPM 248 (287)
T ss_dssp TTSCEEEEESSCTT
T ss_pred CCCeEEEEECCCCC
Confidence 99999999998754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-22 Score=206.20 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=186.6
Q ss_pred eeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 278 QEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 278 ~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+....|...|+|++| ||++||||+.||+|+|||+.+++.
T Consensus 9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~--------------------------------------- 47 (293)
T d1p22a2 9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC--------------------------------------- 47 (293)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------------------------
T ss_pred eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcE---------------------------------------
Confidence 345578889998765 799999999999999999977653
Q ss_pred eeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEe
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFN 437 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fs 437 (755)
+.++.+|.+.|++++|.+ .+|++++.|+.|++|++..+.............. .+.
T Consensus 48 -----------------------~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 102 (293)
T d1p22a2 48 -----------------------KRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLR 102 (293)
T ss_dssp -----------------------EEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEE
T ss_pred -----------------------EEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccc-ccc
Confidence 445678999999998843 2999999999999999999988877754443333 334
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeE----EEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEec
Q 004410 438 PVDDNYFISGSIDGKVRIWEVRRCQV----VDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQ 513 (755)
Q Consensus 438 p~d~~~l~sgs~Dg~V~iwdl~~~~~----~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~ 513 (755)
+ ....++++..++.+++|++..... .....+...+..+.+. ...+++++.|+.|++||+++++.+..+
T Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~----- 174 (293)
T d1p22a2 103 F-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTL----- 174 (293)
T ss_dssp C-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEE-----
T ss_pred c-cccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEE-----
Confidence 4 678899999999999999987542 2456677778777764 467889999999999999998876532
Q ss_pred ccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 514 GKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 514 ~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
..+...+..+.+++ ..+++++.|+.|++||..+....... ..+...+. .+++++.+|++|+.||.|++||
T Consensus 175 ---~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 175 ---NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVR--CIRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp ---ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEE--EEECCSSEEEEEETTSCEEEEE
T ss_pred ---cccccccccccCCC---CeEEEecCCCEEEEEecccceeeeee--cccceeee--eccccceEEEEEcCCCEEEEEE
Confidence 23445677777754 78999999999999999886655554 55666665 4667899999999999999999
Q ss_pred cCCCC
Q 004410 594 YSNQD 598 (755)
Q Consensus 594 ~~~~~ 598 (755)
+....
T Consensus 245 ~~~~~ 249 (293)
T d1p22a2 245 LVAAL 249 (293)
T ss_dssp HHHHT
T ss_pred CCCCc
Confidence 87654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=2.6e-20 Score=191.61 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=203.1
Q ss_pred EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeecCCCCC
Q 004410 251 TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDVQDTDP 329 (755)
Q Consensus 251 asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~ 329 (755)
++++.+++|.|||..+... .+++.. ...+..++|+|||++| ++++.++.|++||+.+++.+..+
T Consensus 6 V~~~~~~~v~v~D~~t~~~-------~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~------- 70 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKV-------TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV------- 70 (301)
T ss_dssp EEETTTTEEEEEETTTTEE-------EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-------
T ss_pred EEECCCCEEEEEECCCCeE-------EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-------
Confidence 4577899999999876532 223332 2457899999999987 56778999999999888754332
Q ss_pred ceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeC
Q 004410 330 SCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSA 407 (755)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~ 407 (755)
..| ..+..++|++++ .++++..
T Consensus 71 -------------------------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~ 94 (301)
T d1l0qa2 71 -------------------------------------------------------PAG-SSPQGVAVSPDGKQVYVTNMA 94 (301)
T ss_dssp -------------------------------------------------------ECS-SSEEEEEECTTSSEEEEEETT
T ss_pred -------------------------------------------------------ecc-ccccccccccccccccccccc
Confidence 223 246789999998 5556677
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEE
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGI 486 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la 486 (755)
++.+.+|+..+++....+.+...+.++.|+| ++..+ +++..++.+.+|+..+...+........+..+.++|++..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
T d1l0qa2 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred cceeeecccccceeeeeccccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccccee
Confidence 8899999999999999999888999999999 77665 556678889999999999887777778889999999999988
Q ss_pred EEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEECCcceeeEEEeee
Q 004410 487 VGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA---DSLVRVLCGENVVGKFKASAF 562 (755)
Q Consensus 487 ~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~ 562 (755)
++..+ +.+.+|+........... ....+..++|++ ++..++++.. ++.|++||..+.......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~--- 240 (301)
T d1l0qa2 174 VANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARI--- 240 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEE---
T ss_pred eecccccccccccccceeeeeccc---------ccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEE---
Confidence 87765 557788887776554321 234578899999 6666665543 467999999886554433
Q ss_pred ccCCceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCC
Q 004410 563 RVAGSQMFATFTSDGKHV-VSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L-~sgs~Dg~I~iWd~~~~~ 598 (755)
.+...+..++|+|||++| ++++.|+.|++||+.+++
T Consensus 241 ~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 234568999999999987 577789999999999886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=2.7e-21 Score=211.59 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=202.0
Q ss_pred eeecCCCC--eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 241 ATLKPGDH--ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~--~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
..++.|.+ ++++...||+|+|||..+.. ...++..|. .+..++|||||++|++++.|++|++||+.+++.
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~-------~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~ 95 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKK-------IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCS-------EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCCc-------EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCce
Confidence 34445433 56778889999999977543 234566664 589999999999999999999999999988764
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
..... +....+|.+.+.+++|+|
T Consensus 96 ~~~~~---------------------------------------------------------i~~~~~~~~~~~s~~~sp 118 (426)
T d1hzua2 96 TKVAE---------------------------------------------------------IKIGIEARSVESSKFKGY 118 (426)
T ss_dssp EEEEE---------------------------------------------------------EECCSEEEEEEECCSTTC
T ss_pred eEEEE---------------------------------------------------------EeCCCCCcceEEeeeecC
Confidence 32211 111234556677788999
Q ss_pred CC-eE-EEEeCCCcEEEEeCCCCeEEEEEe------------cCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCe-
Q 004410 399 NG-FL-LSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQ- 462 (755)
Q Consensus 399 ~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~------------h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~- 462 (755)
|| +| +++..++++++||..++.++..+. +......+.+++ ++..++.... .+.+.+++.....
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~ 197 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDN 197 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSS
T ss_pred CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccc
Confidence 99 54 556689999999999999887764 233445556666 4554444333 3455555555443
Q ss_pred -EEEeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEE-----------------------------
Q 004410 463 -VVDYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQIC----------------------------- 511 (755)
Q Consensus 463 -~~~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~----------------------------- 511 (755)
.+....+...+..+.|+|++++++++.. +..+.+++..+++........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 277 (426)
T d1hzua2 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS 277 (426)
T ss_dssp CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCE
T ss_pred eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCce
Confidence 2344566778899999999999888765 456889998877765322100
Q ss_pred --e---------------cccccCCCCCeEEEEEcCCCCCEEEE-------EECCCcEEEEECCcceeeEEEe-------
Q 004410 512 --L---------------QGKKKLPGKRITGFQFSPSDPSKVIV-------TSADSLVRVLCGENVVGKFKAS------- 560 (755)
Q Consensus 512 --~---------------~~~~~~~~~~I~~v~fsp~d~~~l~s-------~s~Dg~I~iwd~~~~~~~~~~~------- 560 (755)
+ ......|...+..++|+| ++.+|++ ++.+++|+|||..+........
T Consensus 278 v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~ 356 (426)
T d1hzua2 278 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 356 (426)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred EEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcc
Confidence 0 001123566788899999 8888885 4457899999988765443321
Q ss_pred eeccCCceEEEEEecCCCEEEEE-----eCCCcEEEEEcCCCC
Q 004410 561 AFRVAGSQMFATFTSDGKHVVSP-----SEDSNIYIWNYSNQD 598 (755)
Q Consensus 561 ~~~~~~~v~~l~fspdg~~L~sg-----s~Dg~I~iWd~~~~~ 598 (755)
...+...+..++|||||++|+.+ +.||.|+|||..+.+
T Consensus 357 ~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 357 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 12356679999999999987543 357889999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.2e-21 Score=214.92 Aligned_cols=301 Identities=10% Similarity=-0.001 Sum_probs=198.0
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEE-EEEcCCCcEEEEEccC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIE 315 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~ 315 (755)
.+..++|+|||+++++++.|+.|++||+....... ....+...+|.+.+.+..|+|||++| +++..++.|+|||..+
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t 140 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence 45669999999999999999999999987654211 11223345688888999999999986 6788899999999999
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++.+..+..+...... ....+......+.
T Consensus 141 ~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~v~ 169 (432)
T d1qksa2 141 LEPKKIQSTRGMTYDE---------------------------------------------------QEYHPEPRVAAIL 169 (432)
T ss_dssp CCEEEEEECCEECTTT---------------------------------------------------CCEESCCCEEEEE
T ss_pred ccceeeeccCCccccc---------------------------------------------------eeccCCCceeEEE
Confidence 9877655432211110 0113556677889
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEE--EEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeEEEecc--
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLR--VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVVDYTD-- 468 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~--~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~~~~~~-- 468 (755)
+++++ .+++...++.|.+||..+.+... .+.+...+.+++|+| +++++++++. ++.+.++|..+++.+....
T Consensus 170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g 248 (432)
T d1qksa2 170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTG 248 (432)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccC
Confidence 99999 55677788999999998877554 445778899999999 8888777665 5578999998887764322
Q ss_pred ----CCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeee-----eeEEecc-c------------------ccCC
Q 004410 469 ----IREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQ-----NQICLQG-K------------------KKLP 519 (755)
Q Consensus 469 ----~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~-----~~~~~~~-~------------------~~~~ 519 (755)
+........+...+...+... .++.|.+|+......... ..+...+ . ...+
T Consensus 249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~ 328 (432)
T d1qksa2 249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE 328 (432)
T ss_dssp SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred ccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC
Confidence 222333444444444444332 256677776654321100 0000000 0 0000
Q ss_pred CCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEe-----CCCcEEEEEc
Q 004410 520 GKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPS-----EDSNIYIWNY 594 (755)
Q Consensus 520 ~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs-----~Dg~I~iWd~ 594 (755)
......+++ | |+..+++++.|+.+++|+..+.... ..|...+..++|+|||++|+.+. .+|.|.|||.
T Consensus 329 ~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~l-----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 329 AEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAGI-----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp HHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHTC-----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCeeeEEEE-E-echhhcccccCCceEeccccccccc-----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence 001112333 5 6677777777777888875443111 34667889999999999886554 4688999999
Q ss_pred CCCC
Q 004410 595 SNQD 598 (755)
Q Consensus 595 ~~~~ 598 (755)
.+.+
T Consensus 402 ~T~k 405 (432)
T d1qksa2 402 KTLE 405 (432)
T ss_dssp TTTE
T ss_pred CCce
Confidence 9987
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.4e-20 Score=196.54 Aligned_cols=271 Identities=10% Similarity=0.098 Sum_probs=195.1
Q ss_pred CeeEEeeCCCeEEEEECCCCcccccccccceeee--cccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCeeeeeeec
Q 004410 248 HELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL--AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHERLDGFDV 324 (755)
Q Consensus 248 ~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~--~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~~~~~~~ 324 (755)
+++++++.|++|+|||...... .+++. .+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 4789999999999999875432 23333 344567899999999987 5667899999999999887655543
Q ss_pred CCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEE
Q 004410 325 QDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLL 403 (755)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~ 403 (755)
.... .+...+..++|+|++ +++
T Consensus 75 ~~~~---------------------------------------------------------~~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 75 STPE---------------------------------------------------------ERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBTT---------------------------------------------------------EEEECTTCEEECTTSSEEE
T ss_pred CCCc---------------------------------------------------------ccccceeeEEEcCCCcEEE
Confidence 2110 011123357888888 555
Q ss_pred EEe------------CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCc
Q 004410 404 SSS------------ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIRE 471 (755)
Q Consensus 404 s~s------------~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~ 471 (755)
++. .+..+.+||..+++.+..+.+...+..++|+| +++++++++ +.+.+||..+++.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~ 174 (337)
T d1pbyb_ 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLG--RDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEES--SSEEEEETTTTEEEEEECSTT
T ss_pred EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcC-CCCEEEEEc--CCcceeeeecCcEEEEeecCC
Confidence 554 46789999999999999998888899999999 999998886 457889999988775333322
Q ss_pred ceEEEEEccCC------------------------CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEE
Q 004410 472 IVSAVCYCPDG------------------------KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQ 527 (755)
Q Consensus 472 ~V~~v~~spdg------------------------~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~ 527 (755)
......+.|++ ..+..+..++.+.+||+.++...... ...+...+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 247 (337)
T d1pbyb_ 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-------VRIMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-------EEECSSCEEEEE
T ss_pred ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE-------ecCCCcceEEEE
Confidence 22222222222 22222233456888888887654321 122456778889
Q ss_pred EcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 528 FSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 528 fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++| +..+++++ ++.|++||..+....... .+...+.+++|+|||++|++++.|+.|+|||+.+.+
T Consensus 248 ~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRV---PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ecc-cceEEEEc--cccEEEEECCCCcEEEEE---cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 999 77777665 589999999987665553 355678899999999999999999999999999887
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=9.3e-21 Score=200.12 Aligned_cols=291 Identities=9% Similarity=-0.026 Sum_probs=207.8
Q ss_pred eeccCcceeecCCCCeeEEeeCC--CeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEE
Q 004410 234 IIDRHGSATLKPGDHELTLGQRM--RRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVW 311 (755)
Q Consensus 234 ~~~~~~~~~~spdg~~lasgs~d--g~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vW 311 (755)
|..++.+++|+|||++|++++.+ ..|++|+..++.. +.+..|.+.|.+++|+|||++|++++.++.+++|
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~ 112 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 112 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--------EEeeCCCceEEeeeecccccccceeccccccccc
Confidence 45677889999999999876654 3799999876432 3467899999999999999999999999999999
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
++.+++....+..+......+.|.+++...+......... .....+..+.+|+.. ......+..|...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~------~~~~~~~~~~v~d~~-----~~~~~~~~~~~~~~ 181 (360)
T d1k32a3 113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE------TDGYVMQAIHVYDME-----GRKIFAATTENSHD 181 (360)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST------TCSCCEEEEEEEETT-----TTEEEECSCSSSBE
T ss_pred cccccceeeeeecccccccchhhccceeeeeeeccccccc------eeeccccceeeeccc-----cCceeeeccccccc
Confidence 9999998888887777777888877764332222111111 112222334444332 33445566778889
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEE-------EEE-ecCCcEEEEEEeeCCCCEEEEEeCCC-----cEEEEE
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCL-------RVF-SHNNYVTSVAFNPVDDNYFISGSIDG-----KVRIWE 457 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~-------~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg-----~V~iwd 457 (755)
..++|+|+| .|++++.++.+++||....... ..+ .+...+..+.|++ ++..++++..+. .+..++
T Consensus 182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
T d1k32a3 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSEAGEYDLNDMYKRSSPIN 260 (360)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC-GGGSCCCCCCCCTTGGGGCEECS
T ss_pred ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECC-CcCcccccceeecccccceeecc
Confidence 999999999 9999999999999997654332 112 2445555566666 666665554432 244555
Q ss_pred cCCCeEEEeccCCcceEEEEEccCC---CeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+..+....+..+...+..+.+.+.+ .+++.++.++.|++||+.+++... +...|..++|+| |++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------~~~~v~~~~~Sp-DG~ 327 (360)
T d1k32a3 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------------VKNNLTDLRLSA-DRK 327 (360)
T ss_dssp CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE------------EEEEEEEEEECT-TSC
T ss_pred cCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE------------ecCCcCEEEECC-CCC
Confidence 5666666556666666666666544 467888889999999999876532 123588999999 999
Q ss_pred EEEEEECCCcEEEEECCcceeeE
Q 004410 535 KVIVTSADSLVRVLCGENVVGKF 557 (755)
Q Consensus 535 ~l~s~s~Dg~I~iwd~~~~~~~~ 557 (755)
+|++++.||.|++||+.......
T Consensus 328 ~l~~~~~Dg~i~v~d~~~~~~~~ 350 (360)
T d1k32a3 328 TVMVRKDDGKIYTFPLEKPEDER 350 (360)
T ss_dssp EEEEEETTSCEEEEESSCTTSCE
T ss_pred EEEEEECCCeEEEEECCCCCcce
Confidence 99999999999999988754433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=1.1e-19 Score=198.67 Aligned_cols=326 Identities=10% Similarity=0.004 Sum_probs=208.0
Q ss_pred cCcceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-cCCCcEEEEEccC
Q 004410 237 RHGSATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIE 315 (755)
Q Consensus 237 ~~~~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-s~Dg~I~vWdv~~ 315 (755)
.+..++|+|||++|++++.|++|++||+.+..... ....+...+|.+.+.+++|+|||++|+++ ..++.+++||..+
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~ 140 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence 45679999999999999999999999988655321 11223345788889999999999987554 5789999999999
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
+.....+..+...+....+.............. .. ...........+..+..... ........++...+..+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d--~~--~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (426)
T d1hzua2 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HP--EFIVNVKETGKVLLVNYKDI---DNLTVTSIGAAPFLADGG 213 (426)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSS--SS--EEEEEETTTTEEEEEECSSS---SSCEEEEEECCSSEEEEE
T ss_pred cceeEEeeccCCCccceeecCCCceeEEEECCC--CC--EEEEecCCCCeEEEEEeccc---cceeeEEeccCCccEeee
Confidence 988777665544333333333322111111111 11 01111111222222211110 111233456788899999
Q ss_pred EcCCC-eEEE-EeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEE--EEeCCCcEEEEEcCCC-------
Q 004410 396 WSKNG-FLLS-SSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFI--SGSIDGKVRIWEVRRC------- 461 (755)
Q Consensus 396 ~s~~~-~L~s-~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~--sgs~Dg~V~iwdl~~~------- 461 (755)
|+|++ ++++ ...+..+.+|+..+++.+..+. +......+.+.+.....+. +.+.|+.+.+|+....
T Consensus 214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~ 293 (426)
T d1hzua2 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 293 (426)
T ss_dssp ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence 99999 5444 4567789999999999988875 2333344444442222222 3345788888887542
Q ss_pred eEE-EeccCCcceEEEEEccCCCeEEE-------EeCCCcEEEEECCCCeEeeeeeEEe-cccccCCCCCeEEEEEcCCC
Q 004410 462 QVV-DYTDIREIVSAVCYCPDGKGGIV-------GTMTGNCRFYDIKDNQLYQQNQICL-QGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 462 ~~~-~~~~~~~~V~~v~~spdg~~la~-------gs~dg~I~iwD~~~~~~~~~~~~~~-~~~~~~~~~~I~~v~fsp~d 532 (755)
+.. .+..|...+..++|+|||++|++ +..+++|+|||+.+++...+....- ......+...+..++|+| |
T Consensus 294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-D 372 (426)
T d1hzua2 294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-R 372 (426)
T ss_dssp SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-S
T ss_pred eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-C
Confidence 333 57788889999999999999995 4457899999999887654321100 001223567899999999 7
Q ss_pred CCEEEEE-----ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEE
Q 004410 533 PSKVIVT-----SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHV 580 (755)
Q Consensus 533 ~~~l~s~-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L 580 (755)
++++++. +.++.|+|||..+.+..... .++. .++|+|+|-
T Consensus 373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i--~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV--KDPR------LITPTGKFN 417 (426)
T ss_dssp SSEEEEEECCCTTSCCEEEEEETTTTEEEEEE--CCTT------CCSEEEEEE
T ss_pred CCEEEEEEecCCCCCCeEEEEECCCCeEEEEE--CCCC------ccCCCceEe
Confidence 7766543 35788999999987655443 2222 345777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=7.7e-20 Score=191.59 Aligned_cols=279 Identities=10% Similarity=0.010 Sum_probs=192.1
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeee-cccccEEEEEEecCCCEE-EEEcCCCcEEEEEccCCee
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFL-AHEGSILTMKFSLDGQYL-ASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~fspdg~~L-aSgs~Dg~I~vWdv~~~~~ 318 (755)
++|++++++|++++.+++|.|||+.+.. ..+++. .|...+.+++|+|||++| +++..++.|++||+.+++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~-------~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~ 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDT-------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTE-------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCC-------EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence 5899999999999999999999987643 223343 456678899999999987 5566889999999999987
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
+..+....... .+...+..++|+|
T Consensus 75 ~~~~~~~~~~~--------------------------------------------------------~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 75 TFHANLSSVPG--------------------------------------------------------EVGRSMYSFAISP 98 (346)
T ss_dssp EEEEESCCSTT--------------------------------------------------------EEEECSSCEEECT
T ss_pred eeeeccccccc--------------------------------------------------------ccCCceEEEEEec
Confidence 65554321110 0111234578888
Q ss_pred CC-eEEEEe------------CCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 399 NG-FLLSSS------------ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 399 ~~-~L~s~s------------~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
+| ++++++ .+..+.+||..+++....+ .....+..+.+.+ ++.++++ ++.+.+|++.+++
T Consensus 99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ 174 (346)
T d1jmxb_ 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGK 174 (346)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEE---SSSEEEECTTTCC
T ss_pred CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEe---CCcceEEEccCCC
Confidence 88 555443 4778999998876654333 3445566667766 6666554 3568999999988
Q ss_pred EEEeccCCcceEEEEEccCCCeEE--------------------------EEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 463 VVDYTDIREIVSAVCYCPDGKGGI--------------------------VGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 463 ~~~~~~~~~~V~~v~~spdg~~la--------------------------~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
.+...........+.++|++..++ ++..++.+.+||+.++...... .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 247 (346)
T d1jmxb_ 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE-------F 247 (346)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE-------E
T ss_pred EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE-------e
Confidence 776544444445555556554432 2333445667777766554321 1
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
..+...+..+.+++.+ .+++... ++.|.+||..+....... .+...+.+++|+|||++|++++.|+.|+|||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~---~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 248 ADLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEEEEE---ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred ecccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEEEEE---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 2245678888999944 4455444 457999998876554433 3445788999999999999999999999999998
Q ss_pred CC
Q 004410 597 QD 598 (755)
Q Consensus 597 ~~ 598 (755)
++
T Consensus 323 ~~ 324 (346)
T d1jmxb_ 323 LE 324 (346)
T ss_dssp TE
T ss_pred CC
Confidence 87
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=4.1e-18 Score=186.44 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=200.4
Q ss_pred cCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeee
Q 004410 244 KPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFD 323 (755)
Q Consensus 244 spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~ 323 (755)
++++-++++.+.+|+|.|||..+.. ....+..|. .+..++|||||++|++++.|+.|++||+.+++......
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~-------v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~ 100 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 100 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCC-------EEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCc-------EEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE
Confidence 3344456889999999999976543 334565563 69999999999999999999999999998765321110
Q ss_pred cCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-e-
Q 004410 324 VQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-F- 401 (755)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~- 401 (755)
+....+|.+.+....|+||| +
T Consensus 101 ---------------------------------------------------------i~~~~~~~~~~~s~~~SpDG~~l 123 (432)
T d1qksa2 101 ---------------------------------------------------------IKIGSEARSIETSKMEGWEDKYA 123 (432)
T ss_dssp ---------------------------------------------------------EECCSEEEEEEECCSTTCTTTEE
T ss_pred ---------------------------------------------------------EecCCCCCCeEEecccCCCCCEE
Confidence 11122345556667788999 5
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEe------------cCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCeEE--Ee
Q 004410 402 LLSSSADKTVRLWQVGIDRCLRVFS------------HNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQVV--DY 466 (755)
Q Consensus 402 L~s~s~Dg~V~iWdl~s~~~~~~~~------------h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~~~--~~ 466 (755)
+++++.+++|+|||..+++++..+. +......+.++| ++..+ ++...++.|.+||..+.+.. ..
T Consensus 124 ~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~ 202 (432)
T d1qksa2 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTE 202 (432)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence 4778889999999999999988763 456677889999 66654 66677899999999887644 33
Q ss_pred ccCCcceEEEEEccCCCeEEEEeCC-CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCc
Q 004410 467 TDIREIVSAVCYCPDGKGGIVGTMT-GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSL 544 (755)
Q Consensus 467 ~~~~~~V~~v~~spdg~~la~gs~d-g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~ 544 (755)
..+...+..++|+|+|+++++++.+ +.+.++|..+++....... +....+......+.+.. .+...++.. .++.
T Consensus 203 i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT---GGQTPHPGRGANFVHPT-FGPVWATSHMGDDS 278 (432)
T ss_dssp EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC---SSSSBCCTTCEEEEETT-TEEEEEEEBSSSSE
T ss_pred EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc---CccccccCcccceecCC-CCceecccccCCce
Confidence 4556678999999999988887754 5689999999887654322 22223344445555544 444444333 4788
Q ss_pred EEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 004410 545 VRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 545 I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~ 598 (755)
|.+|+...... ..+...+....+++++..+++++.|..+++|......
T Consensus 279 v~~~~~~~~~~------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~ 326 (432)
T d1qksa2 279 VALIGTDPEGH------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326 (432)
T ss_dssp EEEEECCTTTC------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred EEecccccccc------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence 88887654321 3455678888999999999999999999999876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=9.3e-17 Score=164.50 Aligned_cols=239 Identities=17% Similarity=0.194 Sum_probs=185.2
Q ss_pred CcceeecCCCCeeE-EeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEE-EEcCCCcEEEEEccC
Q 004410 238 HGSATLKPGDHELT-LGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLA-SGGEDGTVRVWKVIE 315 (755)
Q Consensus 238 ~~~~~~spdg~~la-sgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~La-Sgs~Dg~I~vWdv~~ 315 (755)
...++|+|||++|+ ++..++.|++||..+... .+++..|. .+..+.|++++.+++ ++..++.+.+|+..+
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-------eeeeeccc-cccccccccccccccccccccceeeeccccc
Confidence 34589999999774 667899999999875432 23455554 468899999998655 556778899999887
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
++....+ .+...+.++.
T Consensus 106 ~~~~~~~---------------------------------------------------------------~~~~~~~~~~ 122 (301)
T d1l0qa2 106 NTVAGTV---------------------------------------------------------------KTGKSPLGLA 122 (301)
T ss_dssp TEEEEEE---------------------------------------------------------------ECSSSEEEEE
T ss_pred ceeeeec---------------------------------------------------------------cccccceEEE
Confidence 7643222 1334567899
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-CcEEEEEcCCCeEEEeccCCcc
Q 004410 396 WSKNG--FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID-GKVRIWEVRRCQVVDYTDIREI 472 (755)
Q Consensus 396 ~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D-g~V~iwdl~~~~~~~~~~~~~~ 472 (755)
|+|++ .++++..++.+.+|+..+...+..+.+...+..++++| ++..++++..+ +.+.+|+...............
T Consensus 123 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (301)
T d1l0qa2 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA 201 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE
T ss_pred eecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeec-cccceeeecccccccccccccceeeeecccccCC
Confidence 99999 45566778999999999999999998888899999999 77777776655 6778888888888777777788
Q ss_pred eEEEEEccCCCeEEEEeC---CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEEE
Q 004410 473 VSAVCYCPDGKGGIVGTM---TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRVL 548 (755)
Q Consensus 473 V~~v~~spdg~~la~gs~---dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~iw 548 (755)
+..+++++++..++++.. ++.|++||+.++++...+. ....+.+++|+| ++++| ++++.++.|++|
T Consensus 202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~---------~~~~~~~va~sp-dg~~l~va~~~~~~i~v~ 271 (301)
T d1l0qa2 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---------VGPDPAGIAVTP-DGKKVYVALSFCNTVSVI 271 (301)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred cceeeccccccccccccccceeeeeeeeecCCCeEEEEEc---------CCCCEEEEEEeC-CCCEEEEEECCCCeEEEE
Confidence 899999999999877654 3679999999998765422 235689999999 77766 566779999999
Q ss_pred ECCcceeeEE
Q 004410 549 CGENVVGKFK 558 (755)
Q Consensus 549 d~~~~~~~~~ 558 (755)
|..+......
T Consensus 272 D~~t~~~~~~ 281 (301)
T d1l0qa2 272 DTATNTITAT 281 (301)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCeEEEE
Confidence 9987654433
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.2e-16 Score=166.49 Aligned_cols=282 Identities=12% Similarity=0.150 Sum_probs=187.4
Q ss_pred eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEE-cCCCcEEEEEccCCeeeeeeecCCC
Q 004410 249 ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASG-GEDGTVRVWKVIEHERLDGFDVQDT 327 (755)
Q Consensus 249 ~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSg-s~Dg~I~vWdv~~~~~~~~~~~~~~ 327 (755)
.++++..+++|+||++..... + ...+ ...|.+.|..|+|+|||++|+++ ..|+.|++|++........+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~-l---~~~~-~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~----- 75 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGA-L---TLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF----- 75 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSC-E---EEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----
T ss_pred EEEECCCCCcEEEEEEcCCCC-e---EEEE-EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-----
Confidence 346778999999999864321 1 1112 23578899999999999998554 55899999998765321111
Q ss_pred CCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEe
Q 004410 328 DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSS 406 (755)
Q Consensus 328 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s 406 (755)
.....+...+..++|+|+| +|++++
T Consensus 76 ------------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~ 101 (333)
T d1ri6a_ 76 ------------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGS 101 (333)
T ss_dssp ------------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred ------------------------------------------------------eeecccCCCceEEEEcCCCCEEeecc
Confidence 0011233456679999999 777776
Q ss_pred -CCCcEEEEeCCCCeEEEEE---ecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEcCCCeEE-------EeccCCcceE
Q 004410 407 -ADKTVRLWQVGIDRCLRVF---SHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEVRRCQVV-------DYTDIREIVS 474 (755)
Q Consensus 407 -~Dg~V~iWdl~s~~~~~~~---~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl~~~~~~-------~~~~~~~~V~ 474 (755)
.++.|.+|+.......... .+...+.++.++| ++++++.++. +..|.+|+....... ..........
T Consensus 102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~ 180 (333)
T d1ri6a_ 102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180 (333)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred cCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCcc
Confidence 4778999998777655444 3777889999999 8888777764 456999998764322 1223345578
Q ss_pred EEEEccCCCeEEEEe-CCCcEEEEECCCCeEeee--eeEEecccccCCCCCeEEEEEcCCCCCE-EEEEECCCcEEEEEC
Q 004410 475 AVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQ--NQICLQGKKKLPGKRITGFQFSPSDPSK-VIVTSADSLVRVLCG 550 (755)
Q Consensus 475 ~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~--~~~~~~~~~~~~~~~I~~v~fsp~d~~~-l~s~s~Dg~I~iwd~ 550 (755)
.++|++++..++... ..+...+|+......... ..................+++++ ++++ ++++..++.+.+|+.
T Consensus 181 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d~~~~~~~~~~~~~~~~~~~ 259 (333)
T d1ri6a_ 181 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSV 259 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred EEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec-ccCceeeecccCCeEEEEEE
Confidence 899999998887655 456678887654332211 11111122223345677889999 5554 455566789999987
Q ss_pred CcceeeEEEe-eeccCCceEEEEEecCCCEEEEEeC-CCcEEEEEcCC
Q 004410 551 ENVVGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSE-DSNIYIWNYSN 596 (755)
Q Consensus 551 ~~~~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~-Dg~I~iWd~~~ 596 (755)
.......... .......+..++|+|||++|++++. ++.|.||+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 6543322221 1234456778999999999887764 58899996643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.75 E-value=2.9e-15 Score=158.99 Aligned_cols=297 Identities=9% Similarity=-0.018 Sum_probs=193.5
Q ss_pred eccCcceeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc------
Q 004410 235 IDRHGSATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG------ 303 (755)
Q Consensus 235 ~~~~~~~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs------ 303 (755)
...+..++++|||+.++.. +..+.|.|||...... .+++.++... .++|+|||++|++++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-------EEEEeCCCCc--cEEEcCCCCEEEEEeecCCcc
Confidence 3446668999999988764 2346788888665432 2334444433 699999999999875
Q ss_pred ----CCCcEEEEEccCCeeeeeeecCCCCCce-------eEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCc
Q 004410 304 ----EDGTVRVWKVIEHERLDGFDVQDTDPSC-------LYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPK 372 (755)
Q Consensus 304 ----~Dg~I~vWdv~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (755)
.++.|.|||+.+++.+..+..+...... +.+.++.....+ .....+..+.+++..
T Consensus 91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v--------------~~~~~~~~~~~~~~~ 156 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF--------------FQFAAGPAVGLVVQG 156 (373)
T ss_pred cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEE--------------EEEcCCCceEEeecc
Confidence 4678999999999988777655433222 222222211111 011111122222211
Q ss_pred ceeccCccceEecCCCCCEEEEEEcCCC--eEEEEeCCCcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCE
Q 004410 373 VFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLSSSADKTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 373 ~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s~s~Dg~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~ 443 (755)
......+.....++.+++++ .+++.+.|+++.+|+...+....... .......+.+.+ +..
T Consensus 157 --------~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 226 (373)
T d2madh_ 157 --------GSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGR 226 (373)
T ss_pred --------CCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--Cce
Confidence 11223444556788999998 66788999999999999888876653 122233444444 445
Q ss_pred EEEEeCCCcEEEEEcCCCeEEE---eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCC
Q 004410 444 FISGSIDGKVRIWEVRRCQVVD---YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPG 520 (755)
Q Consensus 444 l~sgs~Dg~V~iwdl~~~~~~~---~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~ 520 (755)
++..+.++.+.+|+........ +.........+.+.|.+...+..+.++...++
T Consensus 227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------------------- 283 (373)
T d2madh_ 227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL----------------------- 283 (373)
T ss_pred EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE-----------------------
Confidence 6667789999999999876542 33344455666677766666666655543222
Q ss_pred CCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE--EEEEeCCCcEEEEEcCCCC
Q 004410 521 KRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH--VVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 521 ~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~--L~sgs~Dg~I~iWd~~~~~ 598 (755)
+.+ ++..++....++.+.+||..+...... ..+...+..++|+|||++ +++++.|+.|+|||+.+++
T Consensus 284 -------~~~-~~~~~~~~~~~~~v~~~d~~t~~~~~~---~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 284 -------LTS-EQSAWKLHAAAKEVTSVTGLVGQTSSQ---ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -------ecC-CCceEEeecCCCeEEEEECCCCcEEEE---ecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 111 456677778888999999887654443 345677899999999984 4688999999999999997
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=2.9e-15 Score=157.53 Aligned_cols=287 Identities=11% Similarity=0.040 Sum_probs=183.7
Q ss_pred eeecCCCCeeEEe-----eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------CC
Q 004410 241 ATLKPGDHELTLG-----QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------ED 305 (755)
Q Consensus 241 ~~~spdg~~lasg-----s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~D 305 (755)
.+.+||++.++.. ..+..|.|||..+... ..++..+.. ..++|||||++|++++ .|
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCC
Confidence 4678999988764 3456799999876532 223444433 3799999999887653 47
Q ss_pred CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEec
Q 004410 306 GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQ 385 (755)
Q Consensus 306 g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (755)
+.|++||+.+++.+..+..+.... .
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~-------------------------------------------------------~ 102 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------F 102 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------C
T ss_pred CEEEEEECCCCCEEEEEecCCcce-------------------------------------------------------e
Confidence 899999999988766554322110 0
Q ss_pred CCCCCEEEEEEcCCC-eEEEE--eCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 386 GHSSEVLDLSWSKNG-FLLSS--SADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s~--s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
........++|++++ .++.+ +.+..+.+|+..+++.+..+......... .. ....++..+.|++..++......
T Consensus 103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~dg~~~~v~~~~~~ 179 (355)
T d2bbkh_ 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--PT-APDTFFMHCRDGSLAKVAFGTEG 179 (355)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE--EE-ETTEEEEEETTSCEEEEECCSSS
T ss_pred ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe--ec-CCcceEEEcCCCCEEEEEecCCC
Confidence 011223457899999 55554 45678999999999998887644332221 11 33444555566665555543322
Q ss_pred EE---E----eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCC
Q 004410 463 VV---D----YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPS 531 (755)
Q Consensus 463 ~~---~----~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~ 531 (755)
.. . ...+...+....+.+++..++.++.++.+++|++..+.............. .........++++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~- 258 (355)
T d2bbkh_ 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR- 258 (355)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-
T ss_pred eEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-
Confidence 11 1 112333455667888889999999999999999998765432111111000 00112234578888
Q ss_pred CCCEEEEEECC----------CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC--EEEEEeCCCcEEEEEcCCCC
Q 004410 532 DPSKVIVTSAD----------SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK--HVVSPSEDSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s~D----------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~--~L~sgs~Dg~I~iWd~~~~~ 598 (755)
++..+++...+ ..|.+||..+....... .+...+.+++|+|||+ ++++++.|+.|+|||+.+++
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~---~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe---cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 77777665543 36999998876544333 2335578999999998 45677789999999999987
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=1.3e-15 Score=158.19 Aligned_cols=243 Identities=11% Similarity=0.077 Sum_probs=166.3
Q ss_pred CcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC-----------
Q 004410 238 HGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED----------- 305 (755)
Q Consensus 238 ~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D----------- 305 (755)
+.+++|+|||+++ ++++.++.|.+||+.+.... ..+.. .....+...+..++|+||+++|+++..+
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~-~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL-GRIDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-EEEEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE-EEEec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence 4569999999987 56778999999998765422 11110 1111233445679999999999988754
Q ss_pred -CcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 306 -GTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 306 -g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
..+.+||..+++.... +
T Consensus 114 ~~~~~~~d~~~~~~~~~--------------------------------------------------------------~ 131 (337)
T d1pbyb_ 114 PTRVALYDAETLSRRKA--------------------------------------------------------------F 131 (337)
T ss_dssp CCEEEEEETTTTEEEEE--------------------------------------------------------------E
T ss_pred ccceeeccccCCeEEEe--------------------------------------------------------------c
Confidence 4455555554433221 1
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC-----------------------C
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV-----------------------D 440 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~-----------------------d 440 (755)
. +...+..++|++++ ++++++ +.+.+||..+++....+..........+.|. +
T Consensus 132 ~-~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
T d1pbyb_ 132 E-APRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp E-CCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred c-ccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeec
Confidence 1 33456778999999 777775 4578899999998888753222211222220 1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 441 DNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
...+..+..++.+.+|++.++... ....+...+..+.++|++.+++++ ++.|++||+.+++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--------- 277 (337)
T d1pbyb_ 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--------- 277 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---------
T ss_pred cceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc---------
Confidence 111112233456999999988765 355677788899999999988776 4889999999998876432
Q ss_pred CCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
+...+.+++|+| ++++|++++.++.|+|||..+....-..
T Consensus 278 ~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 278 LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 245688999999 8999999999999999999876554443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.61 E-value=6.9e-15 Score=153.18 Aligned_cols=249 Identities=11% Similarity=0.088 Sum_probs=162.8
Q ss_pred cCcceeecCCCCee-EEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-----------
Q 004410 237 RHGSATLKPGDHEL-TLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE----------- 304 (755)
Q Consensus 237 ~~~~~~~spdg~~l-asgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~----------- 304 (755)
...+++|+|||+++ +++..++.|++||..+.... ...........+...+..++|+|||++|++++.
T Consensus 41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~-~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~ 119 (346)
T d1jmxb_ 41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119 (346)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CcceEEECCCCCEEEEEECCCCcEEEEeCccCeee-eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence 35579999999976 55667899999998765432 222222222334445678999999999988753
Q ss_pred -CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceE
Q 004410 305 -DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHE 383 (755)
Q Consensus 305 -Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (755)
++.+.+|+..+++....+..
T Consensus 120 ~~~~i~~~~~~~~~~~~~~~~----------------------------------------------------------- 140 (346)
T d1jmxb_ 120 KPPRLEVFSTADGLEAKPVRT----------------------------------------------------------- 140 (346)
T ss_dssp CCCEEEEEEGGGGGGBCCSEE-----------------------------------------------------------
T ss_pred CcceEEEEecccceeeeEEEe-----------------------------------------------------------
Confidence 45566666655543221110
Q ss_pred ecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeC------------------------
Q 004410 384 FQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPV------------------------ 439 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~------------------------ 439 (755)
......+..+.+++++.++..+ ..+.+|++.+++.+..+.....+..+.++|.
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (346)
T d1jmxb_ 141 -FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217 (346)
T ss_dssp -EECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred -eeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeec
Confidence 0011223344555666444433 4577788777777776653333333333331
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCeEE--EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc
Q 004410 440 -DDNYFISGSIDGKVRIWEVRRCQVV--DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK 516 (755)
Q Consensus 440 -d~~~l~sgs~Dg~V~iwdl~~~~~~--~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~ 516 (755)
....++++..++.+.+||+.++... ....+...+..+.+++++..++.+. ++.|.+||+.+++.+....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~------- 289 (346)
T d1jmxb_ 218 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN------- 289 (346)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-------
T ss_pred cCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-------
Confidence 2223344455667888999887755 3556777889999999998888766 4689999999998765422
Q ss_pred cCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE
Q 004410 517 KLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 517 ~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
....+.+++|+| |+++|++++.|+.|+|||..+....-..
T Consensus 290 --~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 290 --LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp --CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred --CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEE
Confidence 235688999999 8999999999999999999886655444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.7e-12 Score=134.22 Aligned_cols=209 Identities=15% Similarity=0.178 Sum_probs=144.3
Q ss_pred CCCCCEEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCeEEE----EEecCCcEEEEEEeeCCCCEEEEEeC-CCcEEEEEc
Q 004410 386 GHSSEVLDLSWSKNG-FLLS-SSADKTVRLWQVGIDRCLR----VFSHNNYVTSVAFNPVDDNYFISGSI-DGKVRIWEV 458 (755)
Q Consensus 386 gh~~~V~~l~~s~~~-~L~s-~s~Dg~V~iWdl~s~~~~~----~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~V~iwdl 458 (755)
.|.+.+..|+|+||| +|++ +..|+.|++|++....... ...+...+..++|+| ++++|++++. ++.|.+|+.
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeecc
Confidence 477889999999999 6644 4568999999987654322 223566788899999 9999888875 678999998
Q ss_pred CCCeEE---EeccCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 459 RRCQVV---DYTDIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 459 ~~~~~~---~~~~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
...... ....+...+.++.++|+++++++++. +..|.+|+............. ............++|++ ++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~g~~p~~i~~~~-~~~ 189 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA--EVTTVEGAGPRHMVFHP-NEQ 189 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EEECSTTCCEEEEEECT-TSS
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece--eeeeecCCCccEEEEec-cce
Confidence 876544 34556677889999999999888775 456999998765543322211 11223456678899999 555
Q ss_pred EEEE-EECCCcEEEEECCcceeeEEE--ee------eccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 535 KVIV-TSADSLVRVLCGENVVGKFKA--SA------FRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 535 ~l~s-~s~Dg~I~iwd~~~~~~~~~~--~~------~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
.++. ....+...+++.......... .. .........+++++++++++.+ ..++.+.+|++....
T Consensus 190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~ 263 (333)
T d1ri6a_ 190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263 (333)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence 5554 456677888875543221111 00 1123456778899999987665 456789999997654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=3.6e-13 Score=141.12 Aligned_cols=251 Identities=11% Similarity=0.039 Sum_probs=157.5
Q ss_pred cceeecCCCCeeEEe----------eCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc--CCC
Q 004410 239 GSATLKPGDHELTLG----------QRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG--EDG 306 (755)
Q Consensus 239 ~~~~~spdg~~lasg----------s~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs--~Dg 306 (755)
..++|+|||++|++. ..++.|+|||.......-...........+......++|+|+|++++.+. .+.
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 358999999988764 45789999998765421110000000011112234578999999887764 567
Q ss_pred cEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecC
Q 004410 307 TVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQG 386 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 386 (755)
.+.+|+..+++.+..+...... ..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~-- 154 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCY-----------------------------------------------------HIF-- 154 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEE-----------------------------------------------------EEE--
T ss_pred eeeeeecCCCcEeeEEecCCcc-----------------------------------------------------eEe--
Confidence 8999999988766554321100 000
Q ss_pred CCCCEEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 387 HSSEVLDLSWSKNG-F-LLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~-L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.......+.+++++ . ++....++.+.+++...... .+...+....+.+ ++..++.++.++.+++|++..+.+.
T Consensus 155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (355)
T d2bbkh_ 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAK 229 (355)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEE
Confidence 01122335566666 2 23334445555555443322 2444455667777 7888899999999999999887654
Q ss_pred Eecc---C----------CcceEEEEEccCCCeEEEEeCC----------CcEEEEECCCCeEeeeeeEEecccccCCCC
Q 004410 465 DYTD---I----------REIVSAVCYCPDGKGGIVGTMT----------GNCRFYDIKDNQLYQQNQICLQGKKKLPGK 521 (755)
Q Consensus 465 ~~~~---~----------~~~V~~v~~spdg~~la~gs~d----------g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~ 521 (755)
.+.. + ......+++++++..+++...+ ..|.+||+.+++.+..... ..
T Consensus 230 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---------~~ 300 (355)
T d2bbkh_ 230 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---------GH 300 (355)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---------EE
T ss_pred EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---------CC
Confidence 2211 1 1223458899999988876554 3599999999987754332 24
Q ss_pred CeEEEEEcCCCCC--EEEEEECCCcEEEEECCcceeeEEE
Q 004410 522 RITGFQFSPSDPS--KVIVTSADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 522 ~I~~v~fsp~d~~--~l~s~s~Dg~I~iwd~~~~~~~~~~ 559 (755)
.+.+++|+| |++ +++++..|+.|+|||..+.......
T Consensus 301 ~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 301 EIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 578999999 665 4556677999999999886554443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.42 E-value=1.3e-10 Score=122.15 Aligned_cols=276 Identities=6% Similarity=-0.078 Sum_probs=171.1
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeeccccc-------EEEEEEecCCCEEEEE
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAHEGS-------ILTMKFSLDGQYLASG 302 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~-------V~~l~fspdg~~LaSg 302 (755)
.++|+|||++|+++. .++.|.|||..+.... ..+..|... ...+.|++|++.++..
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~ 142 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE-------EEEecCCcceeEeccCCCcEEEEeCCCcEEEE
Confidence 489999999998864 4678999998765421 222233322 2457899999876655
Q ss_pred --cCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCcc
Q 004410 303 --GEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKP 380 (755)
Q Consensus 303 --s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (755)
..++.+.+|+....+....... +.++.+.++.... ......++.+.+++..........
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~---------------~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 143 QFAAGPAVGLVVQGGSSDDQLLSS----PTCYHIHPGAPST---------------FYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EEcCCCceEEeeccCCeEEEEecc----ceeEEEecCCCcE---------------EEEEcCCCeEEEEEcCCceeeEEE
Confidence 4467899999888765544432 3344444443221 122333444444443322211111
Q ss_pred ceEe--cCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEE
Q 004410 381 LHEF--QGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRI 455 (755)
Q Consensus 381 ~~~~--~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~i 455 (755)
.... .++......+.+.+++.++..+.++.+.+|+........... +...+..+.+.| .....+..+.|+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~ 282 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP-GGWQQVAYLKSSDGIY 282 (373)
T ss_pred eeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeecc-CcceeeEEecCCCeEE
Confidence 1111 122233445666777777788889999999998876544432 445555666666 5555555555554322
Q ss_pred EEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC-
Q 004410 456 WEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS- 534 (755)
Q Consensus 456 wdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~- 534 (755)
.+..++..++....++.+.+||+.+++.+... .+...+..++|+| |++
T Consensus 283 ---------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~---------~~~~~~~~~a~sp-DG~~ 331 (373)
T d2madh_ 283 ---------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---------SLGHDVDAISVAQ-DGGP 331 (373)
T ss_pred ---------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEe---------cCCCCeeEEEECC-CCCE
Confidence 23445667778888899999999999876532 2346789999999 666
Q ss_pred -EEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 535 -KVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 535 -~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
++++++.|+.|+|||..+....... ..+....+.+++.+
T Consensus 332 ~l~vt~~~d~~v~v~D~~tg~~~~~~--~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 332 DLYALSAGTEVLHIYDAGAGDQDQST--VELGSGPQVLSVMN 371 (373)
T ss_pred EEEEEeCCCCeEEEEECCCCCEEEEE--CCCCCCCcEEEEec
Confidence 4467889999999999987655444 44555556666544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=1.6e-12 Score=137.69 Aligned_cols=287 Identities=9% Similarity=-0.060 Sum_probs=177.2
Q ss_pred ceeecCCCCee--E-EeeCCCe--EEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEc----------C
Q 004410 240 SATLKPGDHEL--T-LGQRMRR--VRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGG----------E 304 (755)
Q Consensus 240 ~~~~spdg~~l--a-sgs~dg~--V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs----------~ 304 (755)
.++..++++.. + ....++. |.+||..... ..+.+.+|... .++|+|||++|++++ .
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~-------~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV-------TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE-------EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCc-------EEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence 35677888843 2 2344454 5556754432 22334445444 589999999988764 4
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
|+.|++||..+++.+..+..+..... .
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~---------------------------------------------------~-- 121 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRF---------------------------------------------------S-- 121 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSC---------------------------------------------------C--
T ss_pred CCeEEEEECCCCcEeeeecCCcccee---------------------------------------------------c--
Confidence 77899999999887766543322110 0
Q ss_pred cCCCCCEEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCe
Q 004410 385 QGHSSEVLDLSWSKNG-FLLSSS-ADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQ 462 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~-~L~s~s-~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~ 462 (755)
.......++|+||| +|+++. .++.|.+||+.+++.+..+...... .+.|.....++..+.||++.+|++....
T Consensus 122 --~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 122 --VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp --BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred --ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCCceEEEEcCCCCEEEEEecCCc
Confidence 01112248899999 676665 6799999999999998887532221 1223256778888889999999887553
Q ss_pred EEE-------eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccc----cCCCCCeEEEEEcCC
Q 004410 463 VVD-------YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKK----KLPGKRITGFQFSPS 531 (755)
Q Consensus 463 ~~~-------~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~----~~~~~~I~~v~fsp~ 531 (755)
... ...+...+..+.+.+++..+.. ..+.++++++..+.............. .........++++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~- 273 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK- 273 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-
T ss_pred eeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-
Confidence 321 2223344556777777765543 456778888776655432211110000 00011223477888
Q ss_pred CCCEEEEEECC---------CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCC-E-EEEEeCCCcEEEEEcCCCCc
Q 004410 532 DPSKVIVTSAD---------SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGK-H-VVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 532 d~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~-~-L~sgs~Dg~I~iWd~~~~~~ 599 (755)
++..+++...+ ..|.+||..+....... .+...+..++|+|||+ + ++++..|+.|+|||..+++.
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI---SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC---EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe---cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 55555544322 35889998876543332 2345678899999997 3 45677899999999999873
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=8.1e-12 Score=136.92 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=108.9
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---------CCcEEE
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRV 310 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---------Dg~I~v 310 (755)
.+.|.++++++.. .++.+.+|+...+... .+...+.+..|...|.++.|||||++||.++. ++.+.|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 3778999987764 4778999998876542 12233456778889999999999999998853 456778
Q ss_pred EEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCC
Q 004410 311 WKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSE 390 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~ 390 (755)
||+.+++. ..+..|...
T Consensus 97 ~d~~~~~~---------------------------------------------------------------~~l~~~~~~ 113 (470)
T d2bgra1 97 YDLNKRQL---------------------------------------------------------------ITEERIPNN 113 (470)
T ss_dssp EETTTTEE---------------------------------------------------------------CCSSCCCTT
T ss_pred EECCCCcc---------------------------------------------------------------cccccCCcc
Confidence 88877652 234567788
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-------------------cCCcEEEEEEeeCCCCEEEEEeCC
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-------------------HNNYVTSVAFNPVDDNYFISGSID 450 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-------------------h~~~V~~i~fsp~d~~~l~sgs~D 450 (755)
+..+.|+||| .|+. ..++.+++|++.+++..+... ..+....+.|+| |+++|+....|
T Consensus 114 ~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d 191 (470)
T d2bgra1 114 TQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN 191 (470)
T ss_dssp EEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred ccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEec
Confidence 9999999999 6666 467889999999887765442 123346688999 99999988765
Q ss_pred Cc-EEEE
Q 004410 451 GK-VRIW 456 (755)
Q Consensus 451 g~-V~iw 456 (755)
.. |..|
T Consensus 192 ~~~v~~~ 198 (470)
T d2bgra1 192 DTEVPLI 198 (470)
T ss_dssp CTTCCEE
T ss_pred CCcCceE
Confidence 43 4433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.26 E-value=2e-11 Score=130.33 Aligned_cols=271 Identities=13% Similarity=0.049 Sum_probs=168.5
Q ss_pred eEEeeCCCeEEEEECCCCccccccccc------------------------ceeeecccccEEEEEEecCCCEEEEE-cC
Q 004410 250 LTLGQRMRRVRVHPVKKQSRELSSLYT------------------------GQEFLAHEGSILTMKFSLDGQYLASG-GE 304 (755)
Q Consensus 250 lasgs~dg~V~Vw~~~~~~~~~~~~~~------------------------~~~l~~H~~~V~~l~fspdg~~LaSg-s~ 304 (755)
+++|+.+|.|+||++..... +..+.. ......|.-.+....++|||++|+.. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~-l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRE-LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEE-EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcE-EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 56788899999999764321 111110 01122355566777789999998655 56
Q ss_pred CCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEe
Q 004410 305 DGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEF 384 (755)
Q Consensus 305 Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (755)
+..|.++|+.+++....+..+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP----------------------------------------------------------- 113 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIP----------------------------------------------------------- 113 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECT-----------------------------------------------------------
T ss_pred CCEEEEEECCCCcEeeEEecC-----------------------------------------------------------
Confidence 789999999998866544332
Q ss_pred cCCCCCEEEEEEcCCC---eEEEEeCC-----------------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE
Q 004410 385 QGHSSEVLDLSWSKNG---FLLSSSAD-----------------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF 444 (755)
Q Consensus 385 ~gh~~~V~~l~~s~~~---~L~s~s~D-----------------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l 444 (755)
+...+..++|+|++ +++..+.+ ..+..+|..+.+....+.....+..+.|+| +++++
T Consensus 114 --~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~sp-dGk~a 190 (441)
T d1qnia2 114 --NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADY-TGKYA 190 (441)
T ss_dssp --TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECS-SSSEE
T ss_pred --CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECC-CCCEE
Confidence 23345555666555 22222221 124557888887777776666778888888 88887
Q ss_pred EEEeCC-----------------------------------------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCC
Q 004410 445 ISGSID-----------------------------------------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK 483 (755)
Q Consensus 445 ~sgs~D-----------------------------------------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~ 483 (755)
++.+.+ +.+.|++.....++...........+.++|||+
T Consensus 191 ~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGk 270 (441)
T d1qnia2 191 TSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGK 270 (441)
T ss_dssp EEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSC
T ss_pred EEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCC
Confidence 776643 334444444444444444445567899999999
Q ss_pred eEEE-EeCCCcEEEEECCCCeEeeeee----EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcc-----
Q 004410 484 GGIV-GTMTGNCRFYDIKDNQLYQQNQ----ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENV----- 553 (755)
Q Consensus 484 ~la~-gs~dg~I~iwD~~~~~~~~~~~----~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~----- 553 (755)
++++ +..+++|.+||+.+........ ..+.... ..+-.....+|.+ ++..+.+...|+.|..|++...
T Consensus 271 yl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~-~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~ 348 (441)
T d1qnia2 271 YFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP-ELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYN 348 (441)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC-BCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred EEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec-ccccCcccceecC-CceEEEcccccceEEEeccchhhhhhc
Confidence 8765 6678999999987532110000 0001111 1122345568998 7788888889999999996421
Q ss_pred -------eeeEEEe-eeccCCceEEEEEecCCCEEEEEeC
Q 004410 554 -------VGKFKAS-AFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 554 -------~~~~~~~-~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
..+.... ..+|...+.+.+++|||+||++++.
T Consensus 349 ~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 349 GDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp TCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred cCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 1111110 1356666777789999999999954
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=4.3e-11 Score=126.47 Aligned_cols=241 Identities=8% Similarity=-0.098 Sum_probs=144.9
Q ss_pred ceeecCCCCeeEEee----------CCCeEEEEECCCCcccccccccceeeeccc-------ccEEEEEEecCCCEEEEE
Q 004410 240 SATLKPGDHELTLGQ----------RMRRVRVHPVKKQSRELSSLYTGQEFLAHE-------GSILTMKFSLDGQYLASG 302 (755)
Q Consensus 240 ~~~~spdg~~lasgs----------~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~-------~~V~~l~fspdg~~LaSg 302 (755)
.++|+|||+.|++.+ .++.|.+||..+.... +.+..|. .....++|+|||++|+++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-------~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-------ADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-------eeecCCccceecccCCccceEECCCCCEEEEE
Confidence 489999999888753 4778999998754321 1121111 122358999999999877
Q ss_pred c-CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCccee--ccCc
Q 004410 303 G-EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFR--LLEK 379 (755)
Q Consensus 303 s-~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 379 (755)
. .++.|.+||+.+++....+..+..... .+..... ....+.++.+..+...... ....
T Consensus 142 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 142 LFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAAT---------------HYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTE---------------EECCCCTTSCEEEECCSSCCCCEEC
T ss_pred eCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCce---------------EEEEcCCCCEEEEEecCCceeeeee
Confidence 5 579999999999998887765433211 0010000 0111112222211110000 0000
Q ss_pred cceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-------------cCCcEEEEEEeeCCCCEEEE
Q 004410 380 PLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-------------HNNYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 380 ~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-------------h~~~V~~i~fsp~d~~~l~s 446 (755)
....+..+...+..+.+.+++.++. ...+.++++++..+....... .......++++| ++..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v 280 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMI 280 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEE
T ss_pred ecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEE
Confidence 0112233444555677777773332 334667777766555443321 111234577888 6666555
Q ss_pred EeCC---------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCe--EEEEeCCCcEEEEECCCCeEeeee
Q 004410 447 GSID---------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKG--GIVGTMTGNCRFYDIKDNQLYQQN 508 (755)
Q Consensus 447 gs~D---------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~--la~gs~dg~I~iwD~~~~~~~~~~ 508 (755)
...+ ..|.+||..+++.+....+...+.+++|+|||+. ++++..++.|++||..+++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 4322 3599999999998876667778999999999974 355667899999999999987654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.98 E-value=3.7e-09 Score=112.49 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=157.5
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLE 378 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (755)
++|++.+|.|+||++.+++.+..+.... +.... .+........+ +.. .
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfs---------pd~~~-g~g~~~es~~v-----l~~-----------------~ 61 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFN---------VDSAT-GWGITNESKEI-----LGG-----------------D 61 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSS---------BCTTT-CTTTSHHHHHH-----HCS-----------------S
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEc---------CCCCE-EEEECCccceE-----Eec-----------------c
Confidence 5678899999999999999888775321 11100 00000000000 000 0
Q ss_pred ccceEecCCCCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCC--EEEEEeCCC-
Q 004410 379 KPLHEFQGHSSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDN--YFISGSIDG- 451 (755)
Q Consensus 379 ~~~~~~~gh~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~--~l~sgs~Dg- 451 (755)
........|...+......||| +| ++...+.+|.++|+.++++...+. +...+..++|+| +++ |++..+.+.
T Consensus 62 ~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v 140 (441)
T d1qnia2 62 QQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVI 140 (441)
T ss_dssp SCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCE
T ss_pred cccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcc
Confidence 0011122344555556667899 55 455578899999999999988764 678899999999 777 444444332
Q ss_pred ----------------cEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC-----------------------
Q 004410 452 ----------------KVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG----------------------- 492 (755)
Q Consensus 452 ----------------~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg----------------------- 492 (755)
.+..+|..+.++............+.++|+|+++++.+.+.
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p 220 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred cccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence 23557888777764444455678899999999999887543
Q ss_pred ------------------cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEE-EEEECCCcEEEEECCcc
Q 004410 493 ------------------NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKV-IVTSADSLVRVLCGENV 553 (755)
Q Consensus 493 ------------------~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l-~s~s~Dg~I~iwd~~~~ 553 (755)
.+.+++.......... .......++.++| |++++ +++..+++|.|||..+.
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~I---------PvgksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI---------PVPKNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEE---------CCBSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEE---------eCCCCccCceECC-CCCEEEEeCCcCCcEEEEEeehh
Confidence 1222222222211110 1123456789999 66665 55678999999997654
Q ss_pred eee----------EEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 554 VGK----------FKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 554 ~~~----------~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
... .... ....-.....+|+++|..+.+...|+.|..|++..
T Consensus 291 ~~~~~~~~~~~~~~~~~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~ 342 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAE-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342 (441)
T ss_dssp HHHTTTSSCGGGGEEEC-CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred hhHhhccCCcceEEEee-cccccCcccceecCCceEEEcccccceEEEeccch
Confidence 321 1111 11112235568999999999999999999999853
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.97 E-value=5.4e-08 Score=105.68 Aligned_cols=305 Identities=10% Similarity=0.023 Sum_probs=162.7
Q ss_pred ccCcceeecCCCCeeEEeeC---------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCC
Q 004410 236 DRHGSATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDG 306 (755)
Q Consensus 236 ~~~~~~~~spdg~~lasgs~---------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg 306 (755)
..+.++.|||||++||.++. ++.+.||++..+.. +.+..|.+.+..+.|||||++||... ++
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~--------~~l~~~~~~~~~~~~SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL--------ITEERIPNNTQWVTWSPVGHKLAYVW-NN 132 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE--------CCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc--------cccccCCccccccccccCcceeeEee-cc
Confidence 44667999999999998753 56788999876432 23567888999999999999999964 67
Q ss_pred cEEEEEccCCeeeeeeecCC------------------CCCceeEEeeCCCCceeEEeecCcceeeeeeee---------
Q 004410 307 TVRVWKVIEHERLDGFDVQD------------------TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR--------- 359 (755)
Q Consensus 307 ~I~vWdv~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------- 359 (755)
.+.+|++.+++......... .....+.|++++.. ++....+...........
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~-ia~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYP 211 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc-cceeEecCCcCceEEEEeeccCCCCCC
Confidence 89999998887654332211 12234567666543 333322222111111000
Q ss_pred ----------e--cCCceEEEeCCcceeccCccce-------EecCCCCCEEEEEEcCCCe-EEE-EeCCC-----cEEE
Q 004410 360 ----------K--SSDLTCVVLPPKVFRLLEKPLH-------EFQGHSSEVLDLSWSKNGF-LLS-SSADK-----TVRL 413 (755)
Q Consensus 360 ----------~--~~~~~~~~~~~~~~~~~~~~~~-------~~~gh~~~V~~l~~s~~~~-L~s-~s~Dg-----~V~i 413 (755)
+ .....+.+++............ ........+..+.|.+++. ++. ....+ .+..
T Consensus 212 ~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~ 291 (470)
T d2bgra1 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD 291 (470)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred eeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEE
Confidence 0 0111222222211111110000 0112233467788998883 322 22222 2344
Q ss_pred EeCCCCeEEEEEe-------cCCc-----EEEEEEeeC-CCCEEEEEeCCCcE--EEEEcCCCeEEEeccCCcceEEEEE
Q 004410 414 WQVGIDRCLRVFS-------HNNY-----VTSVAFNPV-DDNYFISGSIDGKV--RIWEVRRCQVVDYTDIREIVSAVCY 478 (755)
Q Consensus 414 Wdl~s~~~~~~~~-------h~~~-----V~~i~fsp~-d~~~l~sgs~Dg~V--~iwdl~~~~~~~~~~~~~~V~~v~~ 478 (755)
+|..++....... .... -....+.+. ++.+++....||.. .+|+...+....+......|..+ +
T Consensus 292 ~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~ 370 (470)
T d2bgra1 292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-E 370 (470)
T ss_dssp EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-E
T ss_pred ecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-E
Confidence 4566666544321 1111 112234442 23345566677764 55567777777776666777776 5
Q ss_pred ccCCCeE-EEEeCCC----c--EEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-C--CCcEEEE
Q 004410 479 CPDGKGG-IVGTMTG----N--CRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-A--DSLVRVL 548 (755)
Q Consensus 479 spdg~~l-a~gs~dg----~--I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~--Dg~I~iw 548 (755)
+++++.+ ++++.++ . |+-.++.++.... ++......+...+..++|+| ++++++... . .-.+.+|
T Consensus 371 ~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~----~lt~~~~~~~~~~~s~~fSp-dgky~~~~~s~~~~P~~~l~ 445 (470)
T d2bgra1 371 ALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT----CLSCELNPERCQYYSVSFSK-EAKYYQLRCSGPGLPLYTLH 445 (470)
T ss_dssp EECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEE----ESSTTTSTTTBCBEEEEECT-TSSEEEEEECSBSSCEEEEE
T ss_pred EECCCEEEEEEecCCCCcceEEEEEEECCCCCcee----EecccccCCCCCEEEEEECC-CCCEEEEEecCCCCCeEEEE
Confidence 5556655 3444332 2 4444555433222 12222334567789999999 777766433 2 2346777
Q ss_pred ECCcceee
Q 004410 549 CGENVVGK 556 (755)
Q Consensus 549 d~~~~~~~ 556 (755)
+..+....
T Consensus 446 ~~~~g~~v 453 (470)
T d2bgra1 446 SSVNDKGL 453 (470)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 66554433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.3e-06 Score=86.41 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=112.0
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEe-CCCc--EEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC--cEEEEE
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSS-ADKT--VRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG--KVRIWE 457 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s-~Dg~--V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg--~V~iwd 457 (755)
+..+........|+|++ .++... .++. +..+.....................+++.....+++...+| .|.+.+
T Consensus 78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeee
Confidence 34566778889999999 555443 3333 33334444444444445555666677773333445555555 466667
Q ss_pred cCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC---cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCC
Q 004410 458 VRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPS 534 (755)
Q Consensus 458 l~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg---~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~ 534 (755)
+..+................|+|+++.++..+.++ .+.+++...+..... ..........|+| |++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~p~~SP-DG~ 226 (269)
T d2hqsa1 158 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL----------SSTFLDETPSLAP-NGT 226 (269)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC----------CCSSSCEEEEECT-TSS
T ss_pred cccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEe----------ecCccccceEECC-CCC
Confidence 77776666666777788899999999998876655 355566665544321 1234567789999 788
Q ss_pred EEEEEEC---CCcEEEEECCcceeeEEEeeeccCCceEEEEEec
Q 004410 535 KVIVTSA---DSLVRVLCGENVVGKFKASAFRVAGSQMFATFTS 575 (755)
Q Consensus 535 ~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fsp 575 (755)
+|+..+. ...|.++++...... +. ....+.+...+|||
T Consensus 227 ~i~f~s~~~~~~~l~~~~~dg~~~~-~l--t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 227 MVIYSSSQGMGSVLNLVSTDGRFKA-RL--PATDGQVKFPAWSP 267 (269)
T ss_dssp EEEEEEEETTEEEEEEEETTSCCEE-EC--CCSSSEEEEEEECC
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEE-EE--eCCCCcEEeEEeCC
Confidence 7765543 346778887654332 22 44566778889988
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.89 E-value=4.7e-07 Score=94.83 Aligned_cols=163 Identities=9% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCEEEEEEcCCC-eEEEEeC-CCcEEEEeCCCC-eEEEE--E---ecCCcEEEEEEeeCCCCEEEE-EeCCCcEEEEEc
Q 004410 388 SSEVLDLSWSKNG-FLLSSSA-DKTVRLWQVGID-RCLRV--F---SHNNYVTSVAFNPVDDNYFIS-GSIDGKVRIWEV 458 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~s~-Dg~V~iWdl~s~-~~~~~--~---~h~~~V~~i~fsp~d~~~l~s-gs~Dg~V~iwdl 458 (755)
...+.++.|+|+| +++++.. ...|.+|+.... ..... . ........++|+| +++++++ .-.+++|.+|++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence 3457899999999 6666653 457888876533 22211 1 2456789999999 8887654 556889999998
Q ss_pred CCCeEE---E---e--c------------cCCcceEEEEEccCCCeEEEEeC------CCcEEEEECCCCeEeeeeeEEe
Q 004410 459 RRCQVV---D---Y--T------------DIREIVSAVCYCPDGKGGIVGTM------TGNCRFYDIKDNQLYQQNQICL 512 (755)
Q Consensus 459 ~~~~~~---~---~--~------------~~~~~V~~v~~spdg~~la~gs~------dg~I~iwD~~~~~~~~~~~~~~ 512 (755)
...... . . . ........+.++|||++|+++.. .+.|..|++.....+.... .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~--~ 300 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL--F 300 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE--E
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe--E
Confidence 765321 1 0 0 11123567899999999988643 2237777776433222111 1
Q ss_pred cccccCCCCCeEEEEEcCCCCCEEEEE-ECCCcEEEEECCcc
Q 004410 513 QGKKKLPGKRITGFQFSPSDPSKVIVT-SADSLVRVLCGENV 553 (755)
Q Consensus 513 ~~~~~~~~~~I~~v~fsp~d~~~l~s~-s~Dg~I~iwd~~~~ 553 (755)
.......+....+++++|.++++|+++ ..++.|.+|+....
T Consensus 301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111222345667799998677877666 56789999986543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.85 E-value=4e-06 Score=83.93 Aligned_cols=244 Identities=9% Similarity=0.117 Sum_probs=158.3
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.-..|+++++|+++++-..++.|++||.+ ++.+..+......
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~------------------------------------- 65 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------------------------------------- 65 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-------------------------------------
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-------------------------------------
Confidence 35789999999988887788899999854 5444333211000
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC--eEEE-EeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCC
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG--FLLS-SSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVD 440 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~--~L~s-~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d 440 (755)
.+.......+++..+. .+++ .+.++.|.+++. .++....+. .......+++.+ +
T Consensus 66 -------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~ 124 (279)
T d1q7fa_ 66 -------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-K 124 (279)
T ss_dssp -------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-T
T ss_pred -------------------cccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceecccc-C
Confidence 0111122334444433 3332 334556777775 455555553 456678999998 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEe--ccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccC
Q 004410 441 DNYFISGSIDGKVRIWEVRRCQVVDY--TDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKL 518 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~~~~~~~--~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~ 518 (755)
++++++....+.+.+++.....+..+ ..+......+++.++|..+++....+.|++||.....+. .+ . ...
T Consensus 125 G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~-~~----g--~~g 197 (279)
T d1q7fa_ 125 GRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR-QI----G--GEG 197 (279)
T ss_dssp SCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE-EE----S--CTT
T ss_pred CcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceee-ee----c--ccc
Confidence 88888888888899988765443332 334566888999999998888888999999998764432 11 1 112
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEC-CCcEEEEECCcc-eeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 519 PGKRITGFQFSPSDPSKVIVTSA-DSLVRVLCGENV-VGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 519 ~~~~I~~v~fsp~d~~~l~s~s~-Dg~I~iwd~~~~-~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
......++++.| +++++++-.. +..|.+++..-. ...+.. .........+++.+||.+++ ++.+..|++|++..
T Consensus 198 ~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~--~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 198 ITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALES--KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp TSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEE--SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred cccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeC--CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence 344678999999 7776666544 456999985432 111211 22334578899999997555 56789999999987
Q ss_pred CCc
Q 004410 597 QDK 599 (755)
Q Consensus 597 ~~~ 599 (755)
..+
T Consensus 274 ~~~ 276 (279)
T d1q7fa_ 274 LAP 276 (279)
T ss_dssp CCC
T ss_pred ecC
Confidence 653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.83 E-value=7.9e-07 Score=90.36 Aligned_cols=227 Identities=10% Similarity=0.073 Sum_probs=151.0
Q ss_pred cEEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCce
Q 004410 286 SILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLT 365 (755)
Q Consensus 286 ~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 365 (755)
.+..++++|||+++++...+++|..|+.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------------------------------------------------ 60 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------------------------------------------ 60 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------------------------------------------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE------------------------------------------------
Confidence 47789999999999999999988887743221
Q ss_pred EEEeCCcceeccCccceEecCCCCCEEEEEEcCCC-eEEEEeCCCcEEEEeCCC--CeEEEEE--ecCCcEEEEEEeeCC
Q 004410 366 CVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG-FLLSSSADKTVRLWQVGI--DRCLRVF--SHNNYVTSVAFNPVD 440 (755)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s--~~~~~~~--~h~~~V~~i~fsp~d 440 (755)
..+......+.+++|.++| .+++...++.+.+|+... +...... ........+++.+ +
T Consensus 61 ----------------~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~ 123 (302)
T d2p4oa1 61 ----------------QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-D 123 (302)
T ss_dssp ----------------EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-S
T ss_pred ----------------EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-C
Confidence 1112234568899999999 677777778888887543 2222222 3566789999999 8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEecc-----------CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 441 DNYFISGSIDGKVRIWEVRRCQVVDYTD-----------IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 441 ~~~l~sgs~Dg~V~iwdl~~~~~~~~~~-----------~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
++++++.+.++.+..+|...+....+.. .......+.+.. +..+++.+..+.|+.+++..........
T Consensus 124 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 202 (302)
T d2p4oa1 124 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE 202 (302)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccc
Confidence 9999998889999999988775442111 112345565543 2344556677889888887654433222
Q ss_pred EEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEE---ecCCCEEEEEeCC
Q 004410 510 ICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATF---TSDGKHVVSPSED 586 (755)
Q Consensus 510 ~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~f---spdg~~L~sgs~D 586 (755)
... ......++++.+ +++++++...++.|..++.......+.. ........++++| ++|++.|+.++..
T Consensus 203 ~~~------~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~-~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 203 IFV------EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQ-AEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEE------ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEEC-GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccc------CCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEe-cCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 111 123456799999 8888888888999999976543222221 1223346789999 6788888766543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=2.7e-06 Score=86.87 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=127.8
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe-cC----CcEEEEEEeeCCCCEEEEEeC--------------
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS-HN----NYVTSVAFNPVDDNYFISGSI-------------- 449 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~-h~----~~V~~i~fsp~d~~~l~sgs~-------------- 449 (755)
.-..++|.+++ .|+++...+.|...+........... .. ...+.+++.+ ++++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence 35679999998 77778777788889987654332221 11 1357899999 8888877432
Q ss_pred -CCcEEEEEcCCCeEEEeccCCcceEEEEEccCCC----eE-EEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCe
Q 004410 450 -DGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGK----GG-IVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRI 523 (755)
Q Consensus 450 -Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~----~l-a~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I 523 (755)
+|.|..++.. ++.......-.....++|+|++. .| ++-+..+.|..||+.....+........ .........
T Consensus 151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~-~~~~~~~~p 228 (314)
T d1pjxa_ 151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-IPGTHEGGA 228 (314)
T ss_dssp SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-CCCCSSCEE
T ss_pred CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE-ccccccccc
Confidence 2345445443 33333333334457899999875 34 4456678899998764433322221111 011122345
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCE-EEEEeCCCcEEEEEcCCC
Q 004410 524 TGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKH-VVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 524 ~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~-L~sgs~Dg~I~iWd~~~~ 597 (755)
..+++.. ++++.++....+.|.+||.......... .......++++|.+|++. +++.+.+|.|+..++...
T Consensus 229 dGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i--~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 229 DGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRI--RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEE--ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEE--ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 6899988 7888888888899999997654333222 223456789999999975 466677788888887644
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=3.5e-07 Score=90.88 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=130.2
Q ss_pred EEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEe-cc
Q 004410 391 VLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDY-TD 468 (755)
Q Consensus 391 V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~-~~ 468 (755)
...+++.+++ .+++....+.|++++..+...+..........+|++.+ +++++++-..+..+..++......... ..
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 137 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 137 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence 3567888888 55555555566666655555544444456789999998 888888877777788887766543322 22
Q ss_pred CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEE
Q 004410 469 IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVL 548 (755)
Q Consensus 469 ~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iw 548 (755)
.......+++.++|+.+++...++.|..+|......... .........++++.+ ++.++++....+.|..+
T Consensus 138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCSEEEEEECT-TCCEEEEETTTTEEEEE
T ss_pred ccCCcceeeecCCCCEeeeccccccccccccccceeeee--------eccccCCCccceeee-eeeeeeeecCCCEEEEE
Confidence 234567899999999888888888999999886654321 112335678999998 77887777778888888
Q ss_pred ECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEE
Q 004410 549 CGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWN 593 (755)
Q Consensus 549 d~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd 593 (755)
+.......... ...-.....++++++|.++++-..+++|+..+
T Consensus 209 ~~~~~~~~~~~--~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 209 LAGSTTSTVLP--FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CTTCSCCEECC--CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eCCCCeEEEEc--cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 76543332221 22334568999999998887766666665444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.73 E-value=6.1e-07 Score=91.22 Aligned_cols=203 Identities=7% Similarity=-0.017 Sum_probs=140.7
Q ss_pred CEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCC--eEEE-
Q 004410 390 EVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRC--QVVD- 465 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~--~~~~- 465 (755)
.+..+++.++| ++++...+++|..|+.. ++..........+.+++|.| +++++++...++.+.+|+.... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence 57889999999 77777778999999865 44444456778899999999 9999999988999988887542 2222
Q ss_pred -eccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecc--cccCCCCCeEEEEEcCCCCCEEEEEECC
Q 004410 466 -YTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQG--KKKLPGKRITGFQFSPSDPSKVIVTSAD 542 (755)
Q Consensus 466 -~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~--~~~~~~~~I~~v~fsp~d~~~l~s~s~D 542 (755)
..........+++.++|+++++-+.++.+..+|..++............ ...........+.+. +..++++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCC
Confidence 2234456889999999999888888999999999887644321110000 011122345666665 34566677778
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSN 596 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~ 596 (755)
+.|..++.....................++|+++|+++++...++.|..++...
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 888888865432211111122234456799999999988888899999997654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=4.8e-06 Score=82.14 Aligned_cols=204 Identities=14% Similarity=0.158 Sum_probs=132.5
Q ss_pred eEecCCCCCEEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeC-CCc--EE
Q 004410 382 HEFQGHSSEVLDLSWSKNG-FLLSSSADK---TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSI-DGK--VR 454 (755)
Q Consensus 382 ~~~~gh~~~V~~l~~s~~~-~L~s~s~Dg---~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~-Dg~--V~ 454 (755)
..+..+...+...+||||| .|+...... .+.+.+...+.......+........|+| ++..++.... ++. +.
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEE
T ss_pred EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeeecCCcccee
Confidence 3444456778899999999 777665443 47777888888777777888999999999 8887776553 333 33
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEe-CCC--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTG--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS 531 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs-~dg--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~ 531 (755)
.+.....................+++++..++..+ .+| .|.++++..+.... ............|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~sp- 180 (269)
T d2hqsa1 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGSQNQDADVSS- 180 (269)
T ss_dssp EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSSEEEEEEECT-
T ss_pred ecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee---------eeccccccccccccc-
Confidence 44444445555555556666777888877665544 444 36666666654332 112345667789999
Q ss_pred CCCEEEEEE-CCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeC---CCcEEEEEcCCCC
Q 004410 532 DPSKVIVTS-ADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSE---DSNIYIWNYSNQD 598 (755)
Q Consensus 532 d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~---Dg~I~iWd~~~~~ 598 (755)
++..++..+ ..+...+|........... ...........|+|||++|+..+. ...|++|+++.+.
T Consensus 181 dg~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 181 DGKFMVMVSSNGGQQHIAKQDLATGGVQV--LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEE--CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred ccceeEEEeecCCceeeeEeecccccceE--eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 666665554 4455555543332222332 335566778899999999886554 3468999998765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.69 E-value=1.5e-05 Score=81.35 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=143.7
Q ss_pred EEEEEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceE
Q 004410 287 ILTMKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTC 366 (755)
Q Consensus 287 V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 366 (755)
+..++|.++|++.++-...+.|..|+..++....
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~---------------------------------------------- 75 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR---------------------------------------------- 75 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE----------------------------------------------
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE----------------------------------------------
Confidence 4578999999988887788888888765543211
Q ss_pred EEeCCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEe-C----CCcEEEEeCCCCeEEEEEe---cCCcEEEEEEee
Q 004410 367 VVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSS-A----DKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNP 438 (755)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s-~----Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp 438 (755)
.+.........|++.++|.|+.+. . .+.|...+........... .......+++.+
T Consensus 76 ----------------~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~ 139 (319)
T d2dg1a1 76 ----------------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS 139 (319)
T ss_dssp ----------------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred ----------------EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe
Confidence 111223456789999999444433 2 2345556666665554443 234578899999
Q ss_pred CCCCEEEEEeCC------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCe-EeeeeeE
Q 004410 439 VDDNYFISGSID------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQ-LYQQNQI 510 (755)
Q Consensus 439 ~d~~~l~sgs~D------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~-~~~~~~~ 510 (755)
+++++++.... +.+..++...+.+......-.....++|+|+++.|+++ +..+.|+.||+.... .......
T Consensus 140 -~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~ 218 (319)
T d2dg1a1 140 -KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA 218 (319)
T ss_dssp -TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred -ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccc
Confidence 88877764321 33666665555444433333456789999999877555 567889999986432 1111111
Q ss_pred EecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee----ccCCceEEEEEecCCCEEEEEeC
Q 004410 511 CLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF----RVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 511 ~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~----~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
... ...........+++.+ ++++.++....+.|.+++.. .......... .+...+++++|.+++..+++...
T Consensus 219 ~~~-~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 219 TIP-YYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEE-EECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred eee-eccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 000 0111122356899998 88888888899999999964 3222222111 23345789999998877766554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=1.8e-05 Score=79.02 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=108.4
Q ss_pred CCEEEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 004410 389 SEVLDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS---HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVV 464 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~ 464 (755)
.....++..+++ .+++....+.+.+++. .++.+..+. +......+++.+ +++++++....+.|++||.....+.
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~ 191 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLR 191 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEE
T ss_pred cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc-ceeEEeeeccccceeeeecCCceee
Confidence 456678888888 5555556677888875 455666663 567788999998 8889888888999999998765444
Q ss_pred Eec--cCCcceEEEEEccCCCeEEEEeC-CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 465 DYT--DIREIVSAVCYCPDGKGGIVGTM-TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 465 ~~~--~~~~~V~~v~~spdg~~la~gs~-dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
.+. +.......|++.++|+.+++-.. ++.|.+|+.. ++++..+.. .........+++.| ++. |+++..
T Consensus 192 ~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~------~~~~~~p~~vav~~-dG~-l~V~~~ 262 (279)
T d1q7fa_ 192 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALES------KVKHAQCFDVALMD-DGS-VVLASK 262 (279)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEE------SSCCSCEEEEEEET-TTE-EEEEET
T ss_pred eecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeC------CCCCCCEeEEEEeC-CCc-EEEEeC
Confidence 432 23445789999999987666443 4469999854 555443221 12234678999999 665 555668
Q ss_pred CCcEEEEECCcc
Q 004410 542 DSLVRVLCGENV 553 (755)
Q Consensus 542 Dg~I~iwd~~~~ 553 (755)
++.|++|.....
T Consensus 263 n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 263 DYRLYIYRYVQL 274 (279)
T ss_dssp TTEEEEEECSCC
T ss_pred CCeEEEEEeeee
Confidence 899999986653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.63 E-value=9.6e-06 Score=82.61 Aligned_cols=240 Identities=8% Similarity=0.049 Sum_probs=143.1
Q ss_pred ceeecCCCCeeEEeeC-------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEE
Q 004410 240 SATLKPGDHELTLGQR-------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWK 312 (755)
Q Consensus 240 ~~~~spdg~~lasgs~-------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWd 312 (755)
..+|.|+|+++++... +++|..|+............ ....-.+.-..|+|.++|+.|+++...+.|...+
T Consensus 22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---EETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---ccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4789999997765322 46788888765443221110 1111223456899999999888887767788887
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCC-CCCE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGH-SSEV 391 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V 391 (755)
............. .+. ....
T Consensus 99 ~~g~~~~~~~~~~-----------------------------------------------------------~g~~~~~p 119 (314)
T d1pjxa_ 99 TDGTFEEIAKKDS-----------------------------------------------------------EGRRMQGC 119 (314)
T ss_dssp TTSCEEECCSBCT-----------------------------------------------------------TSCBCBCC
T ss_pred CCCcEEEEEeccc-----------------------------------------------------------cccccCCC
Confidence 6544321100000 000 0123
Q ss_pred EEEEEcCCCeEEEEeC----------------CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-----EEEEEeCC
Q 004410 392 LDLSWSKNGFLLSSSA----------------DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-----YFISGSID 450 (755)
Q Consensus 392 ~~l~~s~~~~L~s~s~----------------Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-----~l~sgs~D 450 (755)
.++++.++|.|..+.. .|.|..++.. ++.......-...+.++|+| +++ ++++-+..
T Consensus 120 ndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~-d~d~~~~~lyv~d~~~ 197 (314)
T d1pjxa_ 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRH-MNDGRPYQLIVAETPT 197 (314)
T ss_dssp CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEE-CTTSCEEEEEEEETTT
T ss_pred cEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECC-CCCcceeEEEEEeecc
Confidence 4556666663322221 2234444432 33333334444567899999 554 55666778
Q ss_pred CcEEEEEcCCC-eEE------Eecc-CCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCC
Q 004410 451 GKVRIWEVRRC-QVV------DYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKR 522 (755)
Q Consensus 451 g~V~iwdl~~~-~~~------~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 522 (755)
+.|..||+... .+. .+.. .......+++..+|+..++....+.|.+||..++....... .+...
T Consensus 198 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~--------~p~~~ 269 (314)
T d1pjxa_ 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--------CPFEK 269 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--------CSSSC
T ss_pred cceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE--------CCCCC
Confidence 88999987643 222 1111 12245689999999988887788999999998876543221 23457
Q ss_pred eEEEEEcCCCCC-EEEEEECCCcEEEEECCc
Q 004410 523 ITGFQFSPSDPS-KVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 523 I~~v~fsp~d~~-~l~s~s~Dg~I~iwd~~~ 552 (755)
.++++|.| +++ ++++.+.++.|..++...
T Consensus 270 ~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 270 PSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 89999999 665 555666778888887654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.61 E-value=2.5e-06 Score=84.50 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=146.2
Q ss_pred ceeecCCCCeeEE-eeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCee
Q 004410 240 SATLKPGDHELTL-GQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHER 318 (755)
Q Consensus 240 ~~~~spdg~~las-gs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~ 318 (755)
.++++++|.+.++ ....+.+..++.......... ..+ ......|+++++|+++++....+.|++++-.+...
T Consensus 18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------FNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEEC----CEEECC------CCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------cCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence 4899999996555 455677777765543322211 111 12345788999999888777666666654332221
Q ss_pred eeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcC
Q 004410 319 LDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSK 398 (755)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~ 398 (755)
+.. ........++++.+
T Consensus 91 ~~~---------------------------------------------------------------~~~~~~p~~iavd~ 107 (260)
T d1rwia_ 91 VLP---------------------------------------------------------------FDGLNYPEGLAVDT 107 (260)
T ss_dssp ECC---------------------------------------------------------------CCSCCSEEEEEECT
T ss_pred eee---------------------------------------------------------------eeeeeecccccccc
Confidence 100 01123467788888
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCeEEEE-EecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-cCCcceEE
Q 004410 399 NG-FLLSSSADKTVRLWQVGIDRCLRV-FSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT-DIREIVSA 475 (755)
Q Consensus 399 ~~-~L~s~s~Dg~V~iWdl~s~~~~~~-~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~-~~~~~V~~ 475 (755)
++ .+++-.....+..++......... .........|++.| +++++++...++.|..+|........+. ..-.....
T Consensus 108 ~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~g 186 (260)
T d1rwia_ 108 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG 186 (260)
T ss_dssp TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE
T ss_pred cceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCcc
Confidence 88 444444555677776654432221 12335567899999 8899888888899999998876655433 34456789
Q ss_pred EEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECC
Q 004410 476 VCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGE 551 (755)
Q Consensus 476 v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~ 551 (755)
|++.++|+++++....+.|..++......... ........++|++.+ ++.++++-..++.|+.++..
T Consensus 187 i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~--------~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--------PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEECTTCCEEEEETTTTEEEEECTTCSCCEEC--------CCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEECCC
T ss_pred ceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE--------ccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEEeCC
Confidence 99999998888877788898888765432210 111224568999998 67777776667777766543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.57 E-value=3e-05 Score=78.91 Aligned_cols=229 Identities=13% Similarity=0.114 Sum_probs=140.5
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC--CcEEEEEcc--C
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED--GTVRVWKVI--E 315 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D--g~I~vWdv~--~ 315 (755)
.++|.++|++.++-...++|..|+....... ..+.........|+|++||+++++...+ ....++.+. .
T Consensus 44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEE-------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred eCEECCCCCEEEEECCCCEEEEEECCCCeEE-------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 3789999997777778888988876543211 1123344567899999999988775432 223333322 1
Q ss_pred CeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEE
Q 004410 316 HERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLS 395 (755)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~ 395 (755)
....... .-..-.....+++
T Consensus 117 ~~~~~~~------------------------------------------------------------~~~~~~~~~nd~~ 136 (319)
T d2dg1a1 117 DNLQDII------------------------------------------------------------EDLSTAYCIDDMV 136 (319)
T ss_dssp CSCEEEE------------------------------------------------------------CSSSSCCCEEEEE
T ss_pred ceeeeec------------------------------------------------------------cCCCcccCCccee
Confidence 1110000 0001123467788
Q ss_pred EcCCCeEEEEeCC-------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCC-e---E
Q 004410 396 WSKNGFLLSSSAD-------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRC-Q---V 463 (755)
Q Consensus 396 ~s~~~~L~s~s~D-------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~-~---~ 463 (755)
+.++|.|..+... +.+..++...+........-...+.|+|+| +++.| ++-+..+.|+.|++... . .
T Consensus 137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g~~~~~ 215 (319)
T d2dg1a1 137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDGVTIQP 215 (319)
T ss_dssp ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEE
T ss_pred EEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCCCceecc
Confidence 8888855544432 235555655544444444445568899999 77754 55667889999998632 1 1
Q ss_pred E-----EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEE
Q 004410 464 V-----DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIV 538 (755)
Q Consensus 464 ~-----~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s 538 (755)
. ...........+++.++|++.++....+.|.+||. .++++..+ .+......+...+++++|.| +...+++
T Consensus 216 ~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i--~~P~~~~~~~~~~~~~~~~~-~~~~~~~ 291 (319)
T d2dg1a1 216 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI--LIPGRDEGHMLRSTHPQFIP-GTNQLII 291 (319)
T ss_dssp EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE--ECTTGGGTCSCBCCEEEECT-TSCEEEE
T ss_pred ccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE--eCCCcCCCcCceeeeEEEeC-CCCEEEE
Confidence 1 11122234678999999998888888999999996 56665443 34443344556788999998 5555555
Q ss_pred EE
Q 004410 539 TS 540 (755)
Q Consensus 539 ~s 540 (755)
..
T Consensus 292 t~ 293 (319)
T d2dg1a1 292 CS 293 (319)
T ss_dssp EE
T ss_pred Ec
Confidence 44
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.39 E-value=0.00012 Score=73.32 Aligned_cols=187 Identities=12% Similarity=0.071 Sum_probs=121.6
Q ss_pred CCEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEEe-----cCCcEEEEEEeeCCCCEEEEEeCC----CcEEEEEcC
Q 004410 389 SEVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVFS-----HNNYVTSVAFNPVDDNYFISGSID----GKVRIWEVR 459 (755)
Q Consensus 389 ~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~~-----h~~~V~~i~fsp~d~~~l~sgs~D----g~V~iwdl~ 459 (755)
..+.++++.+++.|+.++.+ .|.++|..+++...... ....++.+.+.| ++++.++...+ +.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence 35678888888866666665 58899999988765543 223588999999 88877765432 345677777
Q ss_pred CCeEEEeccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEe--eeeeEEecccccCCCCCeEEEEEcCCCCCEE
Q 004410 460 RCQVVDYTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLY--QQNQICLQGKKKLPGKRITGFQFSPSDPSKV 536 (755)
Q Consensus 460 ~~~~~~~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~--~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l 536 (755)
.++.......-.....++|+++++.++.+ +..+.|..|++...... ........ .........++++.. ++++.
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~--~~~~~g~pdG~~vD~-~GnlW 213 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--STGIKGGMDGSVCDA-EGHIW 213 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--CTTSSSEEEEEEECT-TSCEE
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec--cCcccccccceEEcC-CCCEE
Confidence 77766555545567889999999876554 55778999987532211 11111110 112234577889988 77777
Q ss_pred EEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEe-cCCCEEEEE
Q 004410 537 IVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFT-SDGKHVVSP 583 (755)
Q Consensus 537 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fs-pdg~~L~sg 583 (755)
++.-..+.|..||... ...... .-....+++++|- +|.+.|+..
T Consensus 214 va~~~~g~V~~~dp~G-~~~~~i--~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 214 NARWGEGAVDRYDTDG-NHIARY--EVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEETTTEEEEECTTC-CEEEEE--ECSCSBEEEEEEESTTSCEEEEE
T ss_pred eeeeCCCceEEecCCC-cEeeEe--cCCCCceEEEEEeCCCCCEEEEE
Confidence 7777788999999543 222222 1123468999995 676665543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.35 E-value=2e-05 Score=81.93 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEE--e------------------cCCcEEEEEEeeCCCCEEE
Q 004410 388 SSEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVF--S------------------HNNYVTSVAFNPVDDNYFI 445 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~--~------------------h~~~V~~i~fsp~d~~~l~ 445 (755)
......++|+|++ ++ ++...+++|.+|++..++..... . +......+.++| ++++|+
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly 270 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF 270 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence 3567889999999 44 55557899999998765432221 1 112356789999 999887
Q ss_pred EEeC-C-----CcEEEEEcCCC-eEE------EeccCCcceEEEEEcc-CCCeEEEEe-CCCcEEEEECCCCeEe
Q 004410 446 SGSI-D-----GKVRIWEVRRC-QVV------DYTDIREIVSAVCYCP-DGKGGIVGT-MTGNCRFYDIKDNQLY 505 (755)
Q Consensus 446 sgs~-D-----g~V~iwdl~~~-~~~------~~~~~~~~V~~v~~sp-dg~~la~gs-~dg~I~iwD~~~~~~~ 505 (755)
++.. + +.|..|++... .+. ..........+++++| +|++|+++. .++.|.+|+++...+.
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~ 345 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCc
Confidence 7643 2 23777777543 211 1122334567799998 899887764 6788999998766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.13 E-value=0.00077 Score=67.26 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=140.6
Q ss_pred eeecCCCC-eeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCeee
Q 004410 241 ATLKPGDH-ELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHERL 319 (755)
Q Consensus 241 ~~~spdg~-~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~ 319 (755)
..|++... +..+=-..++|..|+..++..... .....+.++++.++|.+++++ .+ -|.++|..+++..
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVH---------ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT 91 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEE---------ECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceee
Confidence 56776544 444444578888888776543211 123468899999999877764 44 4888898777532
Q ss_pred eeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCC
Q 004410 320 DGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKN 399 (755)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~ 399 (755)
....... ......+.++.+.++
T Consensus 92 ~l~~~~~----------------------------------------------------------~~~~~~~nd~~vd~~ 113 (295)
T d2ghsa1 92 LHAELES----------------------------------------------------------DLPGNRSNDGRMHPS 113 (295)
T ss_dssp EEECSST----------------------------------------------------------TCTTEEEEEEEECTT
T ss_pred EEeeeec----------------------------------------------------------CCCcccceeeEECCC
Confidence 1111000 001234677888888
Q ss_pred CeEEEEeC-----CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCC-EEEEEeCCCcEEEEEcCCC-------eE--E
Q 004410 400 GFLLSSSA-----DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDN-YFISGSIDGKVRIWEVRRC-------QV--V 464 (755)
Q Consensus 400 ~~L~s~s~-----Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~-~l~sgs~Dg~V~iwdl~~~-------~~--~ 464 (755)
|.|..++. .+.-.+|.+..++....+..-...+.++|++ +++ ++++-+..+.|..+++... .. .
T Consensus 114 G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~ 192 (295)
T d2ghsa1 114 GALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI 192 (295)
T ss_dssp SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred CCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEe
Confidence 85554442 2345677777777766665555678899999 666 4556667788999987421 11 1
Q ss_pred EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE
Q 004410 465 DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS 540 (755)
Q Consensus 465 ~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s 540 (755)
...........+++..+|++.++.-..|.|..||.. ++++..+. .....+++++|-..+.+.|++++
T Consensus 193 ~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~--------lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 193 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYE--------VPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEE--------CSCSBEEEEEEESTTSCEEEEEE
T ss_pred ccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEec--------CCCCceEEEEEeCCCCCEEEEEE
Confidence 333455668899999999877776778889999965 55554432 23357899999643555555544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=0.00029 Score=75.44 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=116.0
Q ss_pred eeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC---------CCcEEEE
Q 004410 241 ATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE---------DGTVRVW 311 (755)
Q Consensus 241 ~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~---------Dg~I~vW 311 (755)
..|.+++.++. -..+|.|.+|+...+.... +....++ +.-.+....|||||++|+.+.. .+.+.|+
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~--l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTV--LIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEE--EECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCCCEEE--EEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence 45667776554 3456788999876544211 1111111 1224667789999999887642 3556677
Q ss_pred EccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCE
Q 004410 312 KVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEV 391 (755)
Q Consensus 312 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V 391 (755)
|+.++.... +.........+
T Consensus 97 d~~~~~~~~------------------------------------------------------------l~~~~~~~~~l 116 (465)
T d1xfda1 97 KIPHGDPQS------------------------------------------------------------LDPPEVSNAKL 116 (465)
T ss_dssp ESSSCCCEE------------------------------------------------------------CCCTTCCSCCC
T ss_pred EccCCceee------------------------------------------------------------ccCccCCcccc
Confidence 776654211 00011122334
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcE-----------------EEEEEeeCCCCEEEEEeCC-
Q 004410 392 LDLSWSKNG-FLLSSSADKTVRLWQVGIDRCLRVFS--HNNYV-----------------TSVAFNPVDDNYFISGSID- 450 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V-----------------~~i~fsp~d~~~l~sgs~D- 450 (755)
....|||+| .|+... ++.|.+.+..++..++... ....| ..+.|+| |+++|+....|
T Consensus 117 ~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~ 194 (465)
T d1xfda1 117 QYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAIND 194 (465)
T ss_dssp SBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEEC
T ss_pred ceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecc
Confidence 557899999 666654 6778888887776655542 11112 5678999 99998886532
Q ss_pred Cc---------------------------------EEEEEcCCCeEEEe-------ccCCcceEEEEEccCCCeEEEEeC
Q 004410 451 GK---------------------------------VRIWEVRRCQVVDY-------TDIREIVSAVCYCPDGKGGIVGTM 490 (755)
Q Consensus 451 g~---------------------------------V~iwdl~~~~~~~~-------~~~~~~V~~v~~spdg~~la~gs~ 490 (755)
.. +.++|+.++..... ......+..+.|.|+++.++....
T Consensus 195 s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n 274 (465)
T d1xfda1 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (465)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred cccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc
Confidence 22 34444443322110 011223678899999886666443
Q ss_pred C----CcEEEEECCCCeEeee
Q 004410 491 T----GNCRFYDIKDNQLYQQ 507 (755)
Q Consensus 491 d----g~I~iwD~~~~~~~~~ 507 (755)
. ..+.++|..+++....
T Consensus 275 R~q~~~~i~~~d~~tg~~~~~ 295 (465)
T d1xfda1 275 RAQNVSILTLCDATTGVCTKK 295 (465)
T ss_dssp TTSCEEEEEEEETTTCCEEEE
T ss_pred cccccceEEEEcCCCCcEEEE
Confidence 2 2488899999876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.05 E-value=2.2e-05 Score=77.40 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=101.5
Q ss_pred ecCCCCCEEEEEEcCCC-eEEEEeC-C-----CcEEEEeCCCCeEEEEEe-------cCCcEEEEEEeeCCCCEEEEEeC
Q 004410 384 FQGHSSEVLDLSWSKNG-FLLSSSA-D-----KTVRLWQVGIDRCLRVFS-------HNNYVTSVAFNPVDDNYFISGSI 449 (755)
Q Consensus 384 ~~gh~~~V~~l~~s~~~-~L~s~s~-D-----g~V~iWdl~s~~~~~~~~-------h~~~V~~i~fsp~d~~~l~sgs~ 449 (755)
+..+.+.+...+||||| .|+.... + ..|.++++.+++...... .......+.|+| +++.|+....
T Consensus 36 Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 114 (281)
T d1k32a2 36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDA 114 (281)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECT
T ss_pred EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEc
Confidence 34455667889999999 6665432 2 247788888887765532 223457788999 8888876543
Q ss_pred C------CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeE-EEEeCCCc-----------EEEEECCCCeEeeeeeEE
Q 004410 450 D------GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGG-IVGTMTGN-----------CRFYDIKDNQLYQQNQIC 511 (755)
Q Consensus 450 D------g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~l-a~gs~dg~-----------I~iwD~~~~~~~~~~~~~ 511 (755)
. ..+.+.+...+........ ....+ +.+++..+ +....... ..++.........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 186 (281)
T d1k32a2 115 MQPFSSMTCLYRVENDGINFVPLNLG--PATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK----- 186 (281)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECCSC--SCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-----
T ss_pred cCCCccceeeeeecCCCceeEEecCC--cccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceee-----
Confidence 2 2355666666655432222 22222 33444333 33222111 1111111111110
Q ss_pred ecccccCCCCCeEEEEEcCCCCCEEEEEECCC--cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcE
Q 004410 512 LQGKKKLPGKRITGFQFSPSDPSKVIVTSADS--LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNI 589 (755)
Q Consensus 512 ~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I 589 (755)
............+.+ + ..+.....++ .|.++|.......... .... .....|+|||+.|+.. .++.|
T Consensus 187 ----~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt--~~~~--~~~~~~SpDG~~I~f~-~~~~l 255 (281)
T d1k32a2 187 ----IVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHT--SFTD--YYPRHLNTDGRRILFS-KGGSI 255 (281)
T ss_dssp ----EECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECC--CCCS--SCEEEEEESSSCEEEE-ETTEE
T ss_pred ----ccCCccccceeeeec-c-ccceecccccccceEEEeCCCCceEEee--cCCC--cccccCcCCCCEEEEE-eCCEE
Confidence 011222334444544 2 2333333333 4666666554333221 1122 2234689999998864 46889
Q ss_pred EEEEcCCCC
Q 004410 590 YIWNYSNQD 598 (755)
Q Consensus 590 ~iWd~~~~~ 598 (755)
+++|+.+++
T Consensus 256 ~~~d~~~g~ 264 (281)
T d1k32a2 256 YIFNPDTEK 264 (281)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCC
Confidence 999998887
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.91 E-value=0.00049 Score=67.22 Aligned_cols=233 Identities=11% Similarity=0.063 Sum_probs=121.2
Q ss_pred eeecCC--CCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcC-CC-----cEEEEE
Q 004410 241 ATLKPG--DHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGE-DG-----TVRVWK 312 (755)
Q Consensus 241 ~~~spd--g~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~-Dg-----~I~vWd 312 (755)
..++|| |+.+|..+ ++.|.+.++..+.. +.|..+.+.+...+|||||++||.... ++ .|.+++
T Consensus 4 ~~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC-CDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CCEEEEEETTEEEEEE-TTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cccCCCCCCCEEEEEe-CCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 456899 99888664 45688878775432 235567778899999999999986542 21 355666
Q ss_pred ccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEE
Q 004410 313 VIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVL 392 (755)
Q Consensus 313 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~ 392 (755)
..+++....... -...........
T Consensus 75 ~~~g~~~~lt~~--------------------------------------------------------~~~~~~~~~~~~ 98 (281)
T d1k32a2 75 GENGEIKRITYF--------------------------------------------------------SGKSTGRRMFTD 98 (281)
T ss_dssp TTTTEEEECCCC--------------------------------------------------------CEEEETTEECSE
T ss_pred ecCCceEEeeec--------------------------------------------------------CCCccCcccccc
Confidence 655543211000 000011222345
Q ss_pred EEEEcCCC-eEEEEeCC------CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC-----------cEE
Q 004410 393 DLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG-----------KVR 454 (755)
Q Consensus 393 ~l~~s~~~-~L~s~s~D------g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg-----------~V~ 454 (755)
...|+|++ .|+..... ..+.+.+...+..... +......+ +.+.++..++....+. ...
T Consensus 99 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (281)
T d1k32a2 99 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKI 175 (281)
T ss_dssp EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred ccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--cCCcccee-eecCCCeEEEeeccccceeeeeccCCccee
Confidence 67899998 55544321 2345556555544332 22222233 3341333333332211 122
Q ss_pred EEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCC--CcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCC
Q 004410 455 IWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMT--GNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSD 532 (755)
Q Consensus 455 iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~d--g~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d 532 (755)
+......................+.++. .+.....+ ..|.++|+.++...+. . .........|+| +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~l-----t-----~~~~~~~~~~Sp-D 243 (281)
T d1k32a2 176 WIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKH-----T-----SFTDYYPRHLNT-D 243 (281)
T ss_dssp EEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEEC-----C-----CCCSSCEEEEEE-S
T ss_pred eeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEe-----e-----cCCCcccccCcC-C
Confidence 3333333334344444445555565543 22333333 3478888887765421 0 111223346889 6
Q ss_pred CCEEEEEECCCcEEEEECCcce
Q 004410 533 PSKVIVTSADSLVRVLCGENVV 554 (755)
Q Consensus 533 ~~~l~s~s~Dg~I~iwd~~~~~ 554 (755)
++.|+.. .++.|+++|+.+..
T Consensus 244 G~~I~f~-~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 244 GRRILFS-KGGSIYIFNPDTEK 264 (281)
T ss_dssp SSCEEEE-ETTEEEEECTTTCC
T ss_pred CCEEEEE-eCCEEEEEECCCCC
Confidence 6666653 46789999877643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.0023 Score=68.18 Aligned_cols=288 Identities=11% Similarity=0.086 Sum_probs=143.5
Q ss_pred ceeecCCCCeeEEeeC---------CCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEE
Q 004410 240 SATLKPGDHELTLGQR---------MRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRV 310 (755)
Q Consensus 240 ~~~~spdg~~lasgs~---------dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~v 310 (755)
...||||+++++.... .+.+.|+|+.++... .+ .......+.+....|||||+.||-.. ++.|.+
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~--~l---~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~ 138 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ--SL---DPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY 138 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE--EC---CCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee--ec---cCccCCccccceeeeccCCceEEEEe-cceEEE
Confidence 3578999998877643 467888887755421 11 01112334556688999999998876 567888
Q ss_pred EEccCCeeeeeeecCCC------------------CCceeEEeeCCCCceeEEeecCcceeeeeeee-------------
Q 004410 311 WKVIEHERLDGFDVQDT------------------DPSCLYFTINHLSQLIPIDVDKEKIDKTKSLR------------- 359 (755)
Q Consensus 311 Wdv~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 359 (755)
.+..++..++....... ....++|++++.. ++....+...+.......
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~-iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCe-EEEEEecccccceeecccccccccceeeeee
Confidence 88777655443322111 1234556666544 333332222221111100
Q ss_pred ----ecCC--ceEEEeCCccee--ccCccceEecCCCCCEEEEEEcCCCeEEEE--eCC---CcEEEEeCCCCeEEEEEe
Q 004410 360 ----KSSD--LTCVVLPPKVFR--LLEKPLHEFQGHSSEVLDLSWSKNGFLLSS--SAD---KTVRLWQVGIDRCLRVFS 426 (755)
Q Consensus 360 ----~~~~--~~~~~~~~~~~~--~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~--s~D---g~V~iWdl~s~~~~~~~~ 426 (755)
+... ..+.+++..... ....+.........-+..+.|++++.++.. ..+ ..|.++|..++++...+.
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~ 297 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence 0000 112222211100 000111111122334678999999943333 322 258889999998877663
Q ss_pred --cCCcE----EEEEEeeCCCCEE--EEEe-CCC--cEEEEEcC-------CCeEEEeccCCcceEEE-EEccCCCeEEE
Q 004410 427 --HNNYV----TSVAFNPVDDNYF--ISGS-IDG--KVRIWEVR-------RCQVVDYTDIREIVSAV-CYCPDGKGGIV 487 (755)
Q Consensus 427 --h~~~V----~~i~fsp~d~~~l--~sgs-~Dg--~V~iwdl~-------~~~~~~~~~~~~~V~~v-~~spdg~~la~ 487 (755)
...+| ....|.| +++.+ +..+ .+| .+...++. ......+....-.|..+ .|+.+++.|..
T Consensus 298 e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF 376 (465)
T d1xfda1 298 DESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (465)
T ss_dssp EECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred EcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence 33332 3457888 66633 2222 233 34443322 22223344444456654 68888777654
Q ss_pred -EeCCC--cEEEE--ECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 488 -GTMTG--NCRFY--DIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 488 -gs~dg--~I~iw--D~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+..++ .-++| ++.++..... +.. ..........+.|+| ++++++....
T Consensus 377 ~a~~~~p~~~hly~v~l~g~~~~~~----lt~-~~~~~~~~~~~~~S~-~~~y~v~~~s 429 (465)
T d1xfda1 377 LSTEDLPRRRQLYSANTVGNFNRQC----LSC-DLVENCTYFSASFSH-SMDFFLLKCE 429 (465)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBC----SST-TSSSSCCCCEEEECT-TSSEEEEECC
T ss_pred EEeCCCCCceEEEEEECCCCCccee----ecc-ccCCCCCEEEEEECC-CCCEEEEEee
Confidence 44332 23344 4443332211 100 112234567899999 7777665443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.37 E-value=0.021 Score=58.15 Aligned_cols=275 Identities=11% Similarity=0.031 Sum_probs=140.7
Q ss_pred eeecCCCCeeEEeeCC-----C------eEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCC-CcE
Q 004410 241 ATLKPGDHELTLGQRM-----R------RVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGED-GTV 308 (755)
Q Consensus 241 ~~~spdg~~lasgs~d-----g------~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~D-g~I 308 (755)
.....+|++++.|+.+ + .+.+||..++...... . ....|.......++.+||++++.|+.+ ..+
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~--~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--V--TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--E--EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--C--CCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 5566788888887742 1 3678998876542211 0 011222223355788999999998765 589
Q ss_pred EEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCC
Q 004410 309 RVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHS 388 (755)
Q Consensus 309 ~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~ 388 (755)
.+||..+......-. +...
T Consensus 101 ~~yd~~~~~w~~~~~------------------------------------------------------------~~~~- 119 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPD------------------------------------------------------------MQVA- 119 (387)
T ss_dssp EEEEGGGTEEEECCC------------------------------------------------------------CSSC-
T ss_pred eEecCccCccccccc------------------------------------------------------------cccc-
Confidence 999987765321000 0000
Q ss_pred CCEEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCeEEEEEe----------cC-----CcEEEEEEeeCCCCEEEE
Q 004410 389 SEVLDLSWSKNG-FLLSSSAD------KTVRLWQVGIDRCLRVFS----------HN-----NYVTSVAFNPVDDNYFIS 446 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L~s~s~D------g~V~iWdl~s~~~~~~~~----------h~-----~~V~~i~fsp~d~~~l~s 446 (755)
..-..++..+++ .++.++.+ ..+.+||..+.+....-. +. ..-..+...+ +++.++.
T Consensus 120 r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~ 198 (387)
T d1k3ia3 120 RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQA 198 (387)
T ss_dssp CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEEC
T ss_pred ccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEe
Confidence 011235556677 55555532 468999998887644321 00 0001112223 6777777
Q ss_pred EeCCCcEEEEEcCCCeEEEecc---C------CcceEEEEEc-cCCCeEEEEeCCC--------cEEEEECCCCeEeeee
Q 004410 447 GSIDGKVRIWEVRRCQVVDYTD---I------REIVSAVCYC-PDGKGGIVGTMTG--------NCRFYDIKDNQLYQQN 508 (755)
Q Consensus 447 gs~Dg~V~iwdl~~~~~~~~~~---~------~~~V~~v~~s-pdg~~la~gs~dg--------~I~iwD~~~~~~~~~~ 508 (755)
+..++.+.+++..+........ . ...-.++.+. .+++.++.|+... ...++++.........
T Consensus 199 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (387)
T d1k3ia3 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 278 (387)
T ss_dssp CSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred cCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCc
Confidence 7777788888887765442110 0 0111223332 3666777765421 2333333321111000
Q ss_pred eEEecccccCCCCCeEEEEEcCCCCCEEEEEECC-----------CcEEEEECCcceeeEEEeeeccCC-ceEEEEEecC
Q 004410 509 QICLQGKKKLPGKRITGFQFSPSDPSKVIVTSAD-----------SLVRVLCGENVVGKFKASAFRVAG-SQMFATFTSD 576 (755)
Q Consensus 509 ~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~D-----------g~I~iwd~~~~~~~~~~~~~~~~~-~v~~l~fspd 576 (755)
........ ....-.+....+ +++++++|+.+ ..+.+||..+..-..... ..... .-....+.+|
T Consensus 279 -~~~~~~~p-~~r~~~~~~~~~-dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~-~~~~R~~Hs~a~l~~d 354 (387)
T d1k3ia3 279 -VFASNGLY-FARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP-NSIVRVYHSISLLLPD 354 (387)
T ss_dssp -EECTTCCS-SCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC-CSSCCCTTEEEEECTT
T ss_pred -eeeccccc-cccccceeeecc-CCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCC-CCCcccceEEEEECCC
Confidence 00000011 112223455566 77888888743 147789876654332221 11111 1123446799
Q ss_pred CCEEEEEeC
Q 004410 577 GKHVVSPSE 585 (755)
Q Consensus 577 g~~L~sgs~ 585 (755)
|+.++.|+.
T Consensus 355 G~v~v~GG~ 363 (387)
T d1k3ia3 355 GRVFNGGGG 363 (387)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEeCC
Confidence 999999884
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.26 E-value=0.014 Score=59.50 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=140.5
Q ss_pred EEEEcCCCcEEEEEccCCeeeeeeecCCCCCce--------------------eEE---------eeCCCCceeEEeecC
Q 004410 299 LASGGEDGTVRVWKVIEHERLDGFDVQDTDPSC--------------------LYF---------TINHLSQLIPIDVDK 349 (755)
Q Consensus 299 LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~--------------------~~~---------~~~~~~~l~~~~~~~ 349 (755)
+.||+..|.|+|+-+-+++.+..+......+.. ..+ ...+.... .+....
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~Td 94 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFTE 94 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEET
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccccC
Confidence 567888999999999998887776543322110 000 01111111 122222
Q ss_pred cc-eeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEEcCCC---eEEEEeCCC----------------
Q 004410 350 EK-IDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSWSKNG---FLLSSSADK---------------- 409 (755)
Q Consensus 350 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~---~L~s~s~Dg---------------- 409 (755)
+. -.+...+....+..+.+.+...++... +.++ .....+..+...++. +++..+.+.
T Consensus 95 GtyDGrylFVNDkan~RVAvIdl~~fkt~k--Ii~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y 171 (459)
T d1fwxa2 95 GKYDGRFLFMNDKANTRVARVRCDVMKCDA--ILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 171 (459)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEE--EEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred CccceeEEEEEcCCCceEEEEECcceeeeE--EEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence 22 234445555666667666666554321 1122 234456666665543 777666532
Q ss_pred --cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCC---------------cEEEEEc--------------
Q 004410 410 --TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDG---------------KVRIWEV-------------- 458 (755)
Q Consensus 410 --~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg---------------~V~iwdl-------------- 458 (755)
.+.+.|..+.+......-......+.++| +++++++.+.+. .+.++++
T Consensus 172 ~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e 250 (459)
T d1fwxa2 172 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 250 (459)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred ceEEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence 36778999998887777666778899999 899988877542 2333433
Q ss_pred ---------CCC---eEEEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCeEeeeeeEE----ecccccCCCC
Q 004410 459 ---------RRC---QVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQLYQQNQIC----LQGKKKLPGK 521 (755)
Q Consensus 459 ---------~~~---~~~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~~~~~~~~~----~~~~~~~~~~ 521 (755)
++. ..+.+.........+.++|||+++++++ .+.++.++|++.-......... +... ...+-
T Consensus 251 ingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e-~elgl 329 (459)
T d1fwxa2 251 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-PELGL 329 (459)
T ss_dssp ETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC-CBCCS
T ss_pred eCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee-cccCc
Confidence 221 1112222334456789999999998865 5788999999742211100000 0000 11233
Q ss_pred CeEEEEEcCCCCCEEEEEECCCcEEEEECCc
Q 004410 522 RITGFQFSPSDPSKVIVTSADSLVRVLCGEN 552 (755)
Q Consensus 522 ~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~ 552 (755)
.-..-+|.. .+.-..+---|++|.-|++..
T Consensus 330 gPLht~fd~-~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 330 GPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred CccccccCC-CceEEEEeeccceEEEEecch
Confidence 445567876 555444555799999999653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.13 E-value=0.021 Score=58.11 Aligned_cols=206 Identities=10% Similarity=0.050 Sum_probs=110.9
Q ss_pred EEEEEcCCC-eEEEEeCC-CcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeCCCCEEEEEeCC------CcEEEEEcCCC
Q 004410 392 LDLSWSKNG-FLLSSSAD-KTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPVDDNYFISGSID------GKVRIWEVRRC 461 (755)
Q Consensus 392 ~~l~~s~~~-~L~s~s~D-g~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~d~~~l~sgs~D------g~V~iwdl~~~ 461 (755)
...++.+++ .++.|+.+ ..+.+||..+......-. ....-...+..+ ++++++.|+.+ ..+.+||..+.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence 345677888 55555544 689999998887654322 222334556666 88999888753 36899999887
Q ss_pred eEEEeccCC---------------cceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 462 QVVDYTDIR---------------EIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 462 ~~~~~~~~~---------------~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
+-....... .....+...++|+.++.+...+.+.++|..+.....................-.++
T Consensus 158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T d1k3ia3 158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 237 (387)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence 654322111 01122334457788888877888888888877654322211111111111112333
Q ss_pred EEcCCCCCEEEEEECCC--------cEEEEECCcc---eeeEEE-eeeccCCceEEEEEecCCCEEEEEeCCC-------
Q 004410 527 QFSPSDPSKVIVTSADS--------LVRVLCGENV---VGKFKA-SAFRVAGSQMFATFTSDGKHVVSPSEDS------- 587 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg--------~I~iwd~~~~---~~~~~~-~~~~~~~~v~~l~fspdg~~L~sgs~Dg------- 587 (755)
.+...+++.++.|+... ...+.+.... ...... ........-.+....+||++++.|+.+.
T Consensus 238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~ 317 (387)
T d1k3ia3 238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 317 (387)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence 44333566666665321 2333332211 111111 0011122223456668999999988532
Q ss_pred ----cEEEEEcCCCC
Q 004410 588 ----NIYIWNYSNQD 598 (755)
Q Consensus 588 ----~I~iWd~~~~~ 598 (755)
.+.+||..+.+
T Consensus 318 ~~~~~ve~Ydp~~~~ 332 (387)
T d1k3ia3 318 TPVFTPEIYVPEQDT 332 (387)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred cEeceEEEEECCCCe
Confidence 46778876554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.90 E-value=0.19 Score=48.19 Aligned_cols=199 Identities=7% Similarity=-0.028 Sum_probs=123.4
Q ss_pred CCCCEEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeE
Q 004410 387 HSSEVLDLSWSKNG-FLL-SSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQV 463 (755)
Q Consensus 387 h~~~V~~l~~s~~~-~L~-s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~ 463 (755)
+...+..|+|...+ .|. +-..++.|+..++........+. ....+.+|++....+++.++-...+.|.+.++.....
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 33457778888765 444 44566889888887665555553 3367899999874555556666678999999987654
Q ss_pred EEec-cCCcceEEEEEccCCCeEEEEeCC-C--cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEE
Q 004410 464 VDYT-DIREIVSAVCYCPDGKGGIVGTMT-G--NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVT 539 (755)
Q Consensus 464 ~~~~-~~~~~V~~v~~spdg~~la~gs~d-g--~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~ 539 (755)
..+. .....+..++++|...++...... + .|.-.++........ ........+++++.+.+..+.++-
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i--------~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--------AQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE--------ECTTCSCEEEEEEETTTTEEEEEE
T ss_pred EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee--------eeecccccceEEEeecCcEEEEEe
Confidence 3332 223568899999977666654322 2 355456654432211 011234568999988444455555
Q ss_pred ECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 540 SADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 540 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
...+.|...+.......... .+. ....++++. +.+|... ...+.|...|..+++
T Consensus 186 ~~~~~I~~~~~~g~~~~~v~--~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 186 AGTHRAECLNPAQPGRRKVL--EGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp TTTTEEEEEETTEEEEEEEE--ECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEECCCCCeEEEE--CCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence 67788998888754433332 222 234567764 4455444 466778888887765
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.71 E-value=0.29 Score=47.07 Aligned_cols=233 Identities=7% Similarity=0.097 Sum_probs=144.0
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEe
Q 004410 290 MKFSLDGQYLASGGEDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVL 369 (755)
Q Consensus 290 l~fspdg~~LaSgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (755)
.-.+|..+.||.-+ ..++.|+|+++.+.++.+...
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-------------------------------------------- 102 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------------------------------------- 102 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS--------------------------------------------
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC--------------------------------------------
Confidence 34578888877765 458999999998876554432
Q ss_pred CCcceeccCccceEecCCCCCEEEEEEcCCCeEEEEeCCCcEEEEeCCC-CeEEEEEe-----cCCcEEEEEEeeCCCCE
Q 004410 370 PPKVFRLLEKPLHEFQGHSSEVLDLSWSKNGFLLSSSADKTVRLWQVGI-DRCLRVFS-----HNNYVTSVAFNPVDDNY 443 (755)
Q Consensus 370 ~~~~~~~~~~~~~~~~gh~~~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s-~~~~~~~~-----h~~~V~~i~fsp~d~~~ 443 (755)
.+|.--.|-.+..|+..+ +..|+-|+++. ..+.+.|. .+..|.....++ +.++
T Consensus 103 -------------------e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW 161 (327)
T d1utca2 103 -------------------DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKW 161 (327)
T ss_dssp -------------------SCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCE
T ss_pred -------------------CCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCE
Confidence 233344566555444443 35688888843 34666664 235577777777 7777
Q ss_pred EEEEe-------CCCcEEEEEcCCCeEEEeccCCcceEEEEEccCC---CeEEEE---eCCCcEEEEECCCCe----Eee
Q 004410 444 FISGS-------IDGKVRIWEVRRCQVVDYTDIREIVSAVCYCPDG---KGGIVG---TMTGNCRFYDIKDNQ----LYQ 506 (755)
Q Consensus 444 l~sgs-------~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg---~~la~g---s~dg~I~iwD~~~~~----~~~ 506 (755)
++..+ ..|.+.+|..+.+....+.+|......+.+.-+. +.++.+ ...++++|.++.... ...
T Consensus 162 ~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~ 241 (327)
T d1utca2 162 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 241 (327)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC
T ss_pred EEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc
Confidence 66543 2377899999988776666665554444332211 122222 223679999886532 111
Q ss_pred eeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCC
Q 004410 507 QNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSED 586 (755)
Q Consensus 507 ~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~D 586 (755)
.....+.-.......--.++++++ .-..+..-+.-|.|++||+.+....+.. .-....|...+-..+..=+++-..+
T Consensus 242 kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~n--RIs~~~iF~~a~~~~~~Gi~~VNr~ 318 (327)
T d1utca2 242 KKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMN--RISGETIFVTAPHEATAGIIGVNRK 318 (327)
T ss_dssp CEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEe--ecCCCceEEeccCCCCceEEEECCC
Confidence 111122211223344567788888 7789999999999999999998888876 3344556555555555556666677
Q ss_pred CcEEE
Q 004410 587 SNIYI 591 (755)
Q Consensus 587 g~I~i 591 (755)
|.|.-
T Consensus 319 GqVl~ 323 (327)
T d1utca2 319 GQVLS 323 (327)
T ss_dssp SEEEE
T ss_pred CeEEE
Confidence 77654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.32 Score=46.51 Aligned_cols=201 Identities=10% Similarity=-0.017 Sum_probs=119.9
Q ss_pred CCCEEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCeE----EEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC
Q 004410 388 SSEVLDLSWSKNG-FLLSS-SADKTVRLWQVGIDRC----LRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRR 460 (755)
Q Consensus 388 ~~~V~~l~~s~~~-~L~s~-s~Dg~V~iWdl~s~~~----~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~ 460 (755)
...+.++.|.... .|.-. ...+.|+-.++..... ...+ .....+..|++.+..+++.++-...++|.+.++..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 3456778888755 44433 3556676666643221 1122 23355778999885666666666778899999987
Q ss_pred CeEEE-eccCCcceEEEEEccCCCeEEEEe--CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEE
Q 004410 461 CQVVD-YTDIREIVSAVCYCPDGKGGIVGT--MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVI 537 (755)
Q Consensus 461 ~~~~~-~~~~~~~V~~v~~spdg~~la~gs--~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~ 537 (755)
..... ..........++++|...+|.... ..+.|.-.++........ ........+++++.+.++.+.+
T Consensus 109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l--------~~~~~~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--------VTENIQWPNGITLDLLSGRLYW 180 (266)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--------ECSSCSCEEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc--------cccccceeeEEEeeccccEEEE
Confidence 76543 334446688999999655555443 345677777765543221 0112345789999984555555
Q ss_pred EEECCCcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 538 VTSADSLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 538 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
+-...+.|...+....................++++. +.+|..+ ..++.|+..+..++.
T Consensus 181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 5567788988887654333322212222345667765 3445444 467788888877665
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.39 E-value=0.14 Score=55.14 Aligned_cols=98 Identities=12% Similarity=-0.028 Sum_probs=62.6
Q ss_pred CCcEEEEeCCCCeEEEEEecC--------------------------------------CcE-EEEEEeeCCCCEEEEEe
Q 004410 408 DKTVRLWQVGIDRCLRVFSHN--------------------------------------NYV-TSVAFNPVDDNYFISGS 448 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~--------------------------------------~~V-~~i~fsp~d~~~l~sgs 448 (755)
+|.|+-+|+.+++.+-.+.+. ..+ ....+.+ ...+++.+.
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t 253 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence 678999999999998876421 111 2345666 555655554
Q ss_pred C----------------CCcEEEEEcCCCeEEE-eccCC---------cceEEEEEccCCC---eEEEEeCCCcEEEEEC
Q 004410 449 I----------------DGKVRIWEVRRCQVVD-YTDIR---------EIVSAVCYCPDGK---GGIVGTMTGNCRFYDI 499 (755)
Q Consensus 449 ~----------------Dg~V~iwdl~~~~~~~-~~~~~---------~~V~~v~~spdg~---~la~gs~dg~I~iwD~ 499 (755)
. ...|.-.|+++++++- ..... .......+..+|+ .++.++.+|.++++|.
T Consensus 254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr 333 (571)
T d2ad6a1 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence 3 2457778999998773 22111 1122222333554 4577889999999999
Q ss_pred CCCeEee
Q 004410 500 KDNQLYQ 506 (755)
Q Consensus 500 ~~~~~~~ 506 (755)
.+++++.
T Consensus 334 ~tG~~i~ 340 (571)
T d2ad6a1 334 ENGNLIV 340 (571)
T ss_dssp TTCCEEE
T ss_pred CCCcEee
Confidence 9998874
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.48 Score=45.15 Aligned_cols=180 Identities=8% Similarity=-0.109 Sum_probs=110.2
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEE-eCCCcEEEEEcCCCe-----EEEeccCCcceEEEEEccC
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISG-SIDGKVRIWEVRRCQ-----VVDYTDIREIVSAVCYCPD 481 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sg-s~Dg~V~iwdl~~~~-----~~~~~~~~~~V~~v~~spd 481 (755)
...|+..++.+.+....+.....+..|+|++ ..+.|+.. ..++.|+-.++.... ..........+..+++.+.
T Consensus 9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~ 87 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (266)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCCcceeeeCCCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeec
Confidence 3458888998877666666777788999998 55555444 456667777765422 1122223345678999886
Q ss_pred CCeEEEEe-CCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeEEE
Q 004410 482 GKGGIVGT-MTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKFKA 559 (755)
Q Consensus 482 g~~la~gs-~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~~~ 559 (755)
+..|.... ..+.|.+.++......... ........++++.|..+.++++.. ..+.|.-.++.........
T Consensus 88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~--------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 88 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred cceEEEEecCCCEEEeEecCCceEEEEE--------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 66666554 5567999999876543211 112356788999994444444432 2345555555433222221
Q ss_pred eeeccCCceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCC
Q 004410 560 SAFRVAGSQMFATFTSDGKHVVSP-SEDSNIYIWNYSNQD 598 (755)
Q Consensus 560 ~~~~~~~~v~~l~fspdg~~L~sg-s~Dg~I~iWd~~~~~ 598 (755)
...-.....+++.+.++.|..+ ...+.|...+++...
T Consensus 160 --~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 160 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred --ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence 2233556889999888777666 456788888887644
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.93 E-value=0.61 Score=50.15 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=35.8
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
|.|.-||..+.+...+.. +..+..+-.++..|.+++.|+.||.++.+|.++|+.+
T Consensus 453 G~l~A~D~~TG~~~W~~~---~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L 507 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM---ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (596)
T ss_dssp EEEEEECTTTCCEEEEEE---ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCCCCceecccC---CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence 345666666655554432 2222222233456788889999999999999999944
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.83 Score=43.32 Aligned_cols=157 Identities=7% Similarity=-0.067 Sum_probs=93.9
Q ss_pred CCEEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCeEEEEEe-cCCcEEEEEEeeCCCCEEEEEeCCCc--EEEEEcCCCeE
Q 004410 389 SEVLDLSWSKNG-FL-LSSSADKTVRLWQVGIDRCLRVFS-HNNYVTSVAFNPVDDNYFISGSIDGK--VRIWEVRRCQV 463 (755)
Q Consensus 389 ~~V~~l~~s~~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~-h~~~V~~i~fsp~d~~~l~sgs~Dg~--V~iwdl~~~~~ 463 (755)
..+.+|++..-+ .| ++-...+.|.+.++....+...+. ....+..++++|..+.++.+-...+. |.--++.....
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence 346677776533 44 444566789999988666544443 34678999999944444444332233 44446655433
Q ss_pred EE-eccCCcceEEEEEccCCCeEEEE-eCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 464 VD-YTDIREIVSAVCYCPDGKGGIVG-TMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 464 ~~-~~~~~~~V~~v~~spdg~~la~g-s~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
.. ....-....++++.+.++.|..+ ...+.|...|+........ +.+ .....++++. ++.+.++-..
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v----~~~-----~~~P~~lav~--~~~lYwtd~~ 227 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LEG-----LQYPFAVTSY--GKNLYYTDWK 227 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EEC-----CCSEEEEEEE--TTEEEEEETT
T ss_pred eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE----ECC-----CCCcEEEEEE--CCEEEEEECC
Confidence 32 22333467899999888877665 4577899999986554321 111 1223567764 3344444456
Q ss_pred CCcEEEEECCcceee
Q 004410 542 DSLVRVLCGENVVGK 556 (755)
Q Consensus 542 Dg~I~iwd~~~~~~~ 556 (755)
.+.|...|..+....
T Consensus 228 ~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 228 TNSVIAMDLAISKEM 242 (263)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCccc
Confidence 678888887665433
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.59 E-value=0.34 Score=51.87 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=108.2
Q ss_pred CCcEEEEeCCCCeEEEEEecC-------------------------------CcE-EEEEEeeCCCCEEEEEeC------
Q 004410 408 DKTVRLWQVGIDRCLRVFSHN-------------------------------NYV-TSVAFNPVDDNYFISGSI------ 449 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~-------------------------------~~V-~~i~fsp~d~~~l~sgs~------ 449 (755)
.|.|.-+|+.+++.+-.+... ..+ ..+.+.| ...+++.+..
T Consensus 177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~ 255 (560)
T d1kv9a2 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (560)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccc
Confidence 367999999999998877310 011 1245666 5555554321
Q ss_pred -------------CCcEEEEEcCCCeEEEe-cc--CC-------cceEEEEEccCC---CeEEEEeCCCcEEEEECCCCe
Q 004410 450 -------------DGKVRIWEVRRCQVVDY-TD--IR-------EIVSAVCYCPDG---KGGIVGTMTGNCRFYDIKDNQ 503 (755)
Q Consensus 450 -------------Dg~V~iwdl~~~~~~~~-~~--~~-------~~V~~v~~spdg---~~la~gs~dg~I~iwD~~~~~ 503 (755)
...|.-.|+++++++-. .. |. ....-+.+..+| +.++.+..+|.++++|..+++
T Consensus 256 ~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence 23577778889887732 11 11 111222233344 356778899999999999999
Q ss_pred EeeeeeEEecc-----------------ccc-----------CCCCCeEEEEEcCCCCCEEEEEECC-------------
Q 004410 504 LYQQNQICLQG-----------------KKK-----------LPGKRITGFQFSPSDPSKVIVTSAD------------- 542 (755)
Q Consensus 504 ~~~~~~~~~~~-----------------~~~-----------~~~~~I~~v~fsp~d~~~l~s~s~D------------- 542 (755)
++......... ... .-...-...++.| +..++++...+
T Consensus 336 ~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yvp~~~~~~~~~~~~~~~~ 414 (560)
T d1kv9a2 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFV 414 (560)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCC
T ss_pred ccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccC-CCCeeecccccccceeeccccccc
Confidence 87543211000 000 0001112345666 44444443321
Q ss_pred -----------------------CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 543 -----------------------SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 543 -----------------------g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|.|.-+|..+.+...+.... .+...-.++-.|.+++.|+.||.++.+|.++|+.
T Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~---~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~ 491 (560)
T d1kv9a2 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (560)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC---CCCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence 45667787777666665322 2222223445677888999999999999999984
Q ss_pred c
Q 004410 600 S 600 (755)
Q Consensus 600 ~ 600 (755)
+
T Consensus 492 L 492 (560)
T d1kv9a2 492 L 492 (560)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.49 E-value=2 Score=45.50 Aligned_cols=166 Identities=9% Similarity=0.052 Sum_probs=98.4
Q ss_pred CcEEEEeCCCCeEEEEEe---cCC-------cEEEEEEeeCCC---CEEEEEeCCCcEEEEEcCCCeEEEeccCCc----
Q 004410 409 KTVRLWQVGIDRCLRVFS---HNN-------YVTSVAFNPVDD---NYFISGSIDGKVRIWEVRRCQVVDYTDIRE---- 471 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~---h~~-------~V~~i~fsp~d~---~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~---- 471 (755)
..|.-.|+++++..-.++ |.. ...-+.+.. ++ ..++.+..+|.+.++|..+++++.......
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~ 348 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeec-CCceeeeeeecCccceEEEEecCCCcccccccccccccc
Confidence 356777889998887765 211 111122222 33 367778899999999999988763211100
Q ss_pred ---------------------------------ceEEEEEccCCCeEEEEeC----------------------------
Q 004410 472 ---------------------------------IVSAVCYCPDGKGGIVGTM---------------------------- 490 (755)
Q Consensus 472 ---------------------------------~V~~v~~spdg~~la~gs~---------------------------- 490 (755)
.-...+++|+...+++...
T Consensus 349 ~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (560)
T d1kv9a2 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (560)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccc
Confidence 0114567777766665442
Q ss_pred --------CCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEEeee
Q 004410 491 --------TGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKASAF 562 (755)
Q Consensus 491 --------dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 562 (755)
.|.|.-||+.+++.+........ ..... ++ - .+.++++++.|+.++.+|..+.+........
T Consensus 429 ~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~----~~gg~---l~--T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTH----WNGGT---LS--T-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESSS----CCCCE---EE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCCCcccccceEEEeCCCCeEeeeccCCCC----CCCce---eE--E-CCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 25677889999888765443111 11111 12 1 4578889999999999999998877766432
Q ss_pred ccCCceEEEEEecCCC-EEEEEeCC
Q 004410 563 RVAGSQMFATFTSDGK-HVVSPSED 586 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~-~L~sgs~D 586 (755)
.. ..-.-+.+..+|+ ||+..+..
T Consensus 499 ~~-~~~~P~ty~~dGkqyv~v~aG~ 522 (560)
T d1kv9a2 499 SG-IVAAPMTFELAGRQYVAIMAGW 522 (560)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEECC
T ss_pred CC-ccccCEEEEECCEEEEEEEeCC
Confidence 21 1111245566885 55554433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.33 E-value=0.57 Score=47.37 Aligned_cols=202 Identities=16% Similarity=0.244 Sum_probs=123.2
Q ss_pred EEEEcC---CC-eE-EEEeCCCcEEEEeCCCCeEEEEEe--cCCcEEEEEEeeC-CCCEEEEEeCC--------------
Q 004410 393 DLSWSK---NG-FL-LSSSADKTVRLWQVGIDRCLRVFS--HNNYVTSVAFNPV-DDNYFISGSID-------------- 450 (755)
Q Consensus 393 ~l~~s~---~~-~L-~s~s~Dg~V~iWdl~s~~~~~~~~--h~~~V~~i~fsp~-d~~~l~sgs~D-------------- 450 (755)
.+.+.. || +| +.-..+..|-+-|+.+.++.+... ....+..+...+. +..|++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455554 66 44 445578899999999999977653 5566776665431 45577776653
Q ss_pred ----CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCC---------------cEEEEECCC-------C--
Q 004410 451 ----GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTG---------------NCRFYDIKD-------N-- 502 (755)
Q Consensus 451 ----g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg---------------~I~iwD~~~-------~-- 502 (755)
+.+.++|..+.++............+.++++|+++++.+.+. .+.+++... +
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 236778999888775444455677899999999999877531 133444310 0
Q ss_pred eEeeeeeEEeccccc---------CCCCCeEEEEEcCCCCCEEEEEE-CCCcEEEEECCcceeeE----------EEeee
Q 004410 503 QLYQQNQICLQGKKK---------LPGKRITGFQFSPSDPSKVIVTS-ADSLVRVLCGENVVGKF----------KASAF 562 (755)
Q Consensus 503 ~~~~~~~~~~~~~~~---------~~~~~I~~v~fsp~d~~~l~s~s-~Dg~I~iwd~~~~~~~~----------~~~~~ 562 (755)
+.+.... .+..... .-.+...++.++| |++++++++ .+.++.|+|.......+ ... .
T Consensus 249 ~eingV~-VVD~~~~~~~~v~~yIPVpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e-~ 325 (459)
T d1fwxa2 249 QELNGVK-VVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE-P 325 (459)
T ss_dssp EEETTEE-EEECSGG--CSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC-C
T ss_pred EEeCCce-eecccccCCcceeEEEecCCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee-c
Confidence 0000000 0000000 0112345689999 677666554 58999999986532211 111 1
Q ss_pred ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 004410 563 RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQ 597 (755)
Q Consensus 563 ~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~ 597 (755)
...-.....+|...|.-..|---|+.|.-|++...
T Consensus 326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred ccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 22234456789888866666678999999999654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.20 E-value=1.4 Score=47.03 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=34.7
Q ss_pred cEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 004410 544 LVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDKS 600 (755)
Q Consensus 544 ~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~~ 600 (755)
.|.-||..+.+...... ...+...-..+-.|.+|++|+.||.++.+|.++|+..
T Consensus 458 ~l~AiD~~tGk~~W~~~---~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EEEEEETTTTEEEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEEeCCCCCceEeeec---CCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 35556666555555432 1112222233457888999999999999999999843
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.63 E-value=1.8 Score=44.02 Aligned_cols=206 Identities=10% Similarity=0.022 Sum_probs=103.6
Q ss_pred CEEEEEEcCCC-eEE-EEeCCC----cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCC-------------
Q 004410 390 EVLDLSWSKNG-FLL-SSSADK----TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSID------------- 450 (755)
Q Consensus 390 ~V~~l~~s~~~-~L~-s~s~Dg----~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~D------------- 450 (755)
.+..++++|++ +++ +.+..| .|+++|+.+++.+...-.......++|.+ ++..|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCccccccccc
Confidence 34556789999 443 444343 69999999998775332222235688998 77766654432
Q ss_pred ---CcEEEEEcCCCe---EEEec--cCCcceEEEEEccCCCeEEEEeC---CCc--EEEEECCCCeEeeeeeEEeccccc
Q 004410 451 ---GKVRIWEVRRCQ---VVDYT--DIREIVSAVCYCPDGKGGIVGTM---TGN--CRFYDIKDNQLYQQNQICLQGKKK 517 (755)
Q Consensus 451 ---g~V~iwdl~~~~---~~~~~--~~~~~V~~v~~spdg~~la~gs~---dg~--I~iwD~~~~~~~~~~~~~~~~~~~ 517 (755)
..|..|.+.+.. .+.+. .....+..+..+.+++++++... ++. +.+.|+..................
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 257788776642 22222 22335677888999999876443 223 344454432110000000000000
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEEC---CCcEEEEECCccee-eEEEeeeccCCceEEEEEecCCCEEEEE-eCCC--cEE
Q 004410 518 LPGKRITGFQFSPSDPSKVIVTSA---DSLVRVLCGENVVG-KFKASAFRVAGSQMFATFTSDGKHVVSP-SEDS--NIY 590 (755)
Q Consensus 518 ~~~~~I~~v~fsp~d~~~l~s~s~---Dg~I~iwd~~~~~~-~~~~~~~~~~~~v~~l~fspdg~~L~sg-s~Dg--~I~ 590 (755)
.....+.-+. +. +..+++.... ++.|...++.+... ........+...+..-.+...+.+|+.. -.|+ .|+
T Consensus 285 ~~~~~~~~~~-~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~ 362 (430)
T d1qfma1 285 NFEGEYDYVT-NE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (430)
T ss_dssp SSSSCEEEEE-EE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred ccccceEEEe-cC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEE
Confidence 0111222222 22 3334444332 35565566554322 1222112344445544555555666554 4554 488
Q ss_pred EEEcCCCC
Q 004410 591 IWNYSNQD 598 (755)
Q Consensus 591 iWd~~~~~ 598 (755)
++++.++.
T Consensus 363 v~~~~~~~ 370 (430)
T d1qfma1 363 LHDLATGA 370 (430)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 89887765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.36 E-value=2.7 Score=41.26 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=61.9
Q ss_pred eEEEEe---CCCcEEEEeCCCC--eEE--EEEe--cCCcEEEEEEeeCCCCEEEEEeC---------------CCcEEEE
Q 004410 401 FLLSSS---ADKTVRLWQVGID--RCL--RVFS--HNNYVTSVAFNPVDDNYFISGSI---------------DGKVRIW 456 (755)
Q Consensus 401 ~L~s~s---~Dg~V~iWdl~s~--~~~--~~~~--h~~~V~~i~fsp~d~~~l~sgs~---------------Dg~V~iw 456 (755)
+|++.. ...+|.+|++... +.. ..+. .....+.|++.. ++.+++|-.. -+...+|
T Consensus 113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~ 191 (340)
T d1v04a_ 113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 191 (340)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence 455543 3466888876432 222 2222 335678999988 8888877311 1233444
Q ss_pred EcCCCeEEEeccCCcceEEEEEccCCCeEEEEe-CCCcEEEEECCCCe
Q 004410 457 EVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGT-MTGNCRFYDIKDNQ 503 (755)
Q Consensus 457 dl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs-~dg~I~iwD~~~~~ 503 (755)
....+........-.....|+++||+++|+++. ..+.|++|++....
T Consensus 192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 444444333333345678999999998887654 56789999987544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.89 E-value=4.3 Score=42.96 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=36.3
Q ss_pred CcEEEEECCcceeeEEEeeeccCCceEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 004410 543 SLVRVLCGENVVGKFKASAFRVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYSNQDK 599 (755)
Q Consensus 543 g~I~iwd~~~~~~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~~~~~ 599 (755)
|.|.-+|..+.+...+.. ...++..-..+..|.+|++|+.||.++.+|.++|+.
T Consensus 466 G~l~AiD~~TG~i~W~~~---~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~ 519 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHK---EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEEEEECTTTCCEEEEEE---ESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CeEEEEcCCCCcEEeecC---CCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence 456666666665555542 122233223445778888999999999999999984
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.80 E-value=1.2 Score=47.34 Aligned_cols=80 Identities=8% Similarity=-0.035 Sum_probs=55.7
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceE--EEEEccCCC-eE
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVS--AVCYCPDGK-GG 485 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~--~v~~spdg~-~l 485 (755)
|.|.-+|+.+++.+-.........+-.+.- .+.++++|+.||.++.+|.++++.+-.......+. -+.|..||+ +|
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 678899999999987775443333222333 57788889999999999999999985444444333 367777886 44
Q ss_pred EEEe
Q 004410 486 IVGT 489 (755)
Q Consensus 486 a~gs 489 (755)
++..
T Consensus 523 ~v~~ 526 (571)
T d2ad6a1 523 GSMY 526 (571)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.72 E-value=3.4 Score=40.42 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=51.0
Q ss_pred cEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEE-EEEeCCCcEEEEEcCCCe---EEEeccCCcceEEEEEccCCCeE
Q 004410 410 TVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYF-ISGSIDGKVRIWEVRRCQ---VVDYTDIREIVSAVCYCPDGKGG 485 (755)
Q Consensus 410 ~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l-~sgs~Dg~V~iwdl~~~~---~~~~~~~~~~V~~v~~spdg~~l 485 (755)
+..+|....++.......-...+.|+++| ++++| ++-+..++|++|++.... ...........-.+.+.+++..+
T Consensus 187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~-d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l 265 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAEGFDFANGINISP-DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL 265 (340)
T ss_dssp CEEEEEECSSCEEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred ceeEEEEcCCceEEEcCCCCccceeEECC-CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence 34455444555544444556789999999 77665 555667889999987543 22334456667788887754455
Q ss_pred EEEeCC
Q 004410 486 IVGTMT 491 (755)
Q Consensus 486 a~gs~d 491 (755)
.++...
T Consensus 266 wva~~p 271 (340)
T d1v04a_ 266 WVGCHP 271 (340)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 555443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.32 E-value=3.6 Score=39.20 Aligned_cols=233 Identities=12% Similarity=0.191 Sum_probs=130.9
Q ss_pred ceeecCCCCeeEEeeCCCeEEEEECCCCcccccccccceeeecccccEEEEEEecCCCEEEEEcCCCcEEEEEccCCe-e
Q 004410 240 SATLKPGDHELTLGQRMRRVRVHPVKKQSRELSSLYTGQEFLAHEGSILTMKFSLDGQYLASGGEDGTVRVWKVIEHE-R 318 (755)
Q Consensus 240 ~~~~spdg~~lasgs~dg~V~Vw~~~~~~~~~~~~~~~~~l~~H~~~V~~l~fspdg~~LaSgs~Dg~I~vWdv~~~~-~ 318 (755)
++-.+|..+.||.-+ ..++.|++++.+.+. ... . ....|.--+|-.+ +.|+-.+. ..|.=|+++... .
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~kl-ks~------~-~~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P 135 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM-KAH------T-MTDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQP 135 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEE-EEE------E-CSSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhh-ceE------E-cCCCcEEEEecCC-CEEEEEcC-CceEEEcccCCCCc
Confidence 367889999888876 458999998865542 111 1 1245666677643 45666654 479999985432 2
Q ss_pred eeeeecCC--CCCceeEEeeCCCCceeEEeecCcceeeeeeeeecCCceEEEeCCcceeccCccceEecCCCCCEEEEEE
Q 004410 319 LDGFDVQD--TDPSCLYFTINHLSQLIPIDVDKEKIDKTKSLRKSSDLTCVVLPPKVFRLLEKPLHEFQGHSSEVLDLSW 396 (755)
Q Consensus 319 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~ 396 (755)
.+.+..+. .....+.+..+.......+ .-+.. .+.. +.-....+....+.-+.+.||.+....+..
T Consensus 136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l----------~GI~~-~~~~-i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~ 203 (327)
T d1utca2 136 VKMFDRHSSLAGCQIINYRTDAKQKWLLL----------TGISA-QQNR-VVGAMQLYSVDRKVSQPIEGHAASFAQFKM 203 (327)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEE----------EEEEE-ETTE-EEEEEEEEETTTTEEEEECCSEEEEEEECC
T ss_pred hhhhhhcccccCceEEEEEECCCCCEEEE----------EeEec-CCCc-eeEEEEEEEeccCcCccccceeeeeEEEEc
Confidence 22222221 1122222222222221111 11111 1111 122223334444556677888665555544
Q ss_pred cCCC----eEEEEe---CCCcEEEEeCCCCe---------EEEEE-e---cCCcEEEEEEeeCCCCEEEEEeCCCcEEEE
Q 004410 397 SKNG----FLLSSS---ADKTVRLWQVGIDR---------CLRVF-S---HNNYVTSVAFNPVDDNYFISGSIDGKVRIW 456 (755)
Q Consensus 397 s~~~----~L~s~s---~Dg~V~iWdl~s~~---------~~~~~-~---h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iw 456 (755)
..+. .++.+. ..+.++|-++.... ....+ . ..+...++.+++ ...+++.-+.-|.|.+|
T Consensus 204 ~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~ly 282 (327)
T d1utca2 204 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLY 282 (327)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEE
T ss_pred CCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEE
Confidence 3222 222222 23678888876421 11111 1 467788999998 88899999999999999
Q ss_pred EcCCCeEEEecc-CCcceEEEEEccCCCeEEEEeCCCcEEE
Q 004410 457 EVRRCQVVDYTD-IREIVSAVCYCPDGKGGIVGTMTGNCRF 496 (755)
Q Consensus 457 dl~~~~~~~~~~-~~~~V~~v~~spdg~~la~gs~dg~I~i 496 (755)
|+.++.++.... ..+.|...+-..+...++....+|.|..
T Consensus 283 DleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 283 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 999999885443 3556665555555556666667776643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=93.19 E-value=6.3 Score=41.70 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeee
Q 004410 451 GKVRIWEVRRCQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQ 509 (755)
Q Consensus 451 g~V~iwdl~~~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~ 509 (755)
|.|.-||+.+++++-...+...+..-.++..|.++++|+.||.++.||..+++.+.++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 46778888888776333233332222333467788889999999999999999987654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.27 E-value=6.5 Score=39.53 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=112.1
Q ss_pred ccccEEEEEEecCCCEEEEE-c----CCCcEEEEEccCCeeeeeeecCCCCCceeEEeeCCCCceeEEeecCcceeeeee
Q 004410 283 HEGSILTMKFSLDGQYLASG-G----EDGTVRVWKVIEHERLDGFDVQDTDPSCLYFTINHLSQLIPIDVDKEKIDKTKS 357 (755)
Q Consensus 283 H~~~V~~l~fspdg~~LaSg-s----~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (755)
+.-.+..+++|||+++||.+ + +-..|++.|+.+++.+...- .......+.|..+....++..............
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 33345567889999998854 2 22369999999998764321 111123344444443332221111000000000
Q ss_pred eeecCCceEEEeCCcceeccCccceEecC--CCCCEEEEEEcCCC-eEE-EEe--CCCcEEEE--eCCCCe--------E
Q 004410 358 LRKSSDLTCVVLPPKVFRLLEKPLHEFQG--HSSEVLDLSWSKNG-FLL-SSS--ADKTVRLW--QVGIDR--------C 421 (755)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--h~~~V~~l~~s~~~-~L~-s~s--~Dg~V~iW--dl~s~~--------~ 421 (755)
-.......+........ .......+.. ....+..+..+.++ +++ ... .+....+| |+.... .
T Consensus 202 ~~~~~~~~v~~h~lgt~--~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTD--QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (430)
T ss_dssp CCCCCCCEEEEEETTSC--GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCcceEEEEECCCC--ccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence 00000001111100000 0111112222 23346677788888 443 332 23344444 433211 1
Q ss_pred EEEEecCCcEEEEEEeeCCCCEEEEEeC---CCcEEEEEcCCCeE---EEecc-CCcceEEEEEccCCCeEEEEe-CCC-
Q 004410 422 LRVFSHNNYVTSVAFNPVDDNYFISGSI---DGKVRIWEVRRCQV---VDYTD-IREIVSAVCYCPDGKGGIVGT-MTG- 492 (755)
Q Consensus 422 ~~~~~h~~~V~~i~fsp~d~~~l~sgs~---Dg~V~iwdl~~~~~---~~~~~-~~~~V~~v~~spdg~~la~gs-~dg- 492 (755)
...+...........+. ++.+++.... ++.|...++..... ..+.. +...+..-.+...+.+|++.. .++
T Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 280 VKLIDNFEGEYDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp EEEECSSSSCEEEEEEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred eEeecccccceEEEecC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence 22222222222233333 3444444333 35677777765321 12222 333444444444555666554 454
Q ss_pred -cEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC----CCcEEEEECCcc
Q 004410 493 -NCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA----DSLVRVLCGENV 553 (755)
Q Consensus 493 -~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~----Dg~I~iwd~~~~ 553 (755)
.|+++++.++..... .......+..+...+ +...+...-. =.++..+|+.+.
T Consensus 359 ~~l~v~~~~~~~~~~~--------~~~~~~sv~~~~~~~-~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 359 NTLQLHDLATGALLKI--------FPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEEEEEETTTCCEEEE--------ECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred eEEEEEECCCCcEEEe--------cCCCCceEeeccCCC-CCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 488899988765432 111224455555555 3333333222 256667776654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.97 E-value=2.5 Score=44.82 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=55.0
Q ss_pred CcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEE--EEEccCCC-eE
Q 004410 409 KTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSA--VCYCPDGK-GG 485 (755)
Q Consensus 409 g~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~--v~~spdg~-~l 485 (755)
|.|.-||+.+++.+-.+.+..+...-...- .+.++++|+.||.++.+|..+++.+-.......+.+ +.|..+|+ +|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 568889999999988776443333222333 678888999999999999999999844433333222 56667886 44
Q ss_pred EEEe
Q 004410 486 IVGT 489 (755)
Q Consensus 486 a~gs 489 (755)
++.+
T Consensus 536 ~v~~ 539 (573)
T d1kb0a2 536 SVAV 539 (573)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.14 E-value=5.2 Score=42.27 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=56.6
Q ss_pred CCcEEEEeCCCCeEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcce--EEEEEccCCC-e
Q 004410 408 DKTVRLWQVGIDRCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIV--SAVCYCPDGK-G 484 (755)
Q Consensus 408 Dg~V~iWdl~s~~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V--~~v~~spdg~-~ 484 (755)
.|.|.-+|+.+++.+-.+....++..-.... .+.++++|+.||.++.+|.++++++-.......+ .-+.|..+|+ +
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 3678899999999988876444443323344 6778888999999999999999999443333322 2367778885 4
Q ss_pred EEEE
Q 004410 485 GIVG 488 (755)
Q Consensus 485 la~g 488 (755)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.26 E-value=6.8 Score=38.30 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=87.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEeccCCcceEEEEEcc------CCCeEEEEeCC----CcEEEEECCC--CeEeee
Q 004410 440 DDNYFISGSIDGKVRIWEVRRCQVVDYTDIREIVSAVCYCP------DGKGGIVGTMT----GNCRFYDIKD--NQLYQQ 507 (755)
Q Consensus 440 d~~~l~sgs~Dg~V~iwdl~~~~~~~~~~~~~~V~~v~~sp------dg~~la~gs~d----g~I~iwD~~~--~~~~~~ 507 (755)
...+++.....+-|++||+. ++.+.... .+.+..|..-. ....|++++.. .+|.+|.+.. ..+. .
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~-~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ-S 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE-E
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc-c
Confidence 45677777777779999996 44444332 34555555432 22345666532 3577787653 2221 1
Q ss_pred eeEEecccccCCCCCeEEEEE--cCCCCC-EEEEEECCCcEEEEECCc---c-eeeEEEeeeccCCceEEEEEecCCCEE
Q 004410 508 NQICLQGKKKLPGKRITGFQF--SPSDPS-KVIVTSADSLVRVLCGEN---V-VGKFKASAFRVAGSQMFATFTSDGKHV 580 (755)
Q Consensus 508 ~~~~~~~~~~~~~~~I~~v~f--sp~d~~-~l~s~s~Dg~I~iwd~~~---~-~~~~~~~~~~~~~~v~~l~fspdg~~L 580 (755)
+.. ...........++++|+ +|.++. ++++...+|.+..|.+.. . ........+.....+..+.+......|
T Consensus 116 ~~~-~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITD-PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSC-SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred ccc-cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 100 00001112235777777 665555 566777789988886532 1 111111224456678899999999999
Q ss_pred EEEeCCCcEEEEEcC
Q 004410 581 VSPSEDSNIYIWNYS 595 (755)
Q Consensus 581 ~sgs~Dg~I~iWd~~ 595 (755)
+.+-++..|..++..
T Consensus 195 yisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEEETTTEEEEEESS
T ss_pred EEecCccceEEEEec
Confidence 999888776666654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.89 E-value=9.6 Score=37.17 Aligned_cols=119 Identities=14% Similarity=0.245 Sum_probs=74.6
Q ss_pred EEEEEE--cCC-C--eEEEEeCCCcEEEEeCC---CC----eEEEEEecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEc
Q 004410 391 VLDLSW--SKN-G--FLLSSSADKTVRLWQVG---ID----RCLRVFSHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEV 458 (755)
Q Consensus 391 V~~l~~--s~~-~--~L~s~s~Dg~V~iWdl~---s~----~~~~~~~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl 458 (755)
+..+|+ ++. + +++....+|.+..|.+. .+ +.++.+.....+..+.+.+ ....|+.+-.+.-|+.++.
T Consensus 130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD-EYGSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEEES
T ss_pred ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC-CCCcEEEecCccceEEEEe
Confidence 455555 543 4 56667778888888652 22 4566677778899999998 7778888887776766665
Q ss_pred C-----CCeEEEec---cCCcceEEEEEc--cCCC-eEEE-EeCCCcEEEEECCCC-eEeeeeeE
Q 004410 459 R-----RCQVVDYT---DIREIVSAVCYC--PDGK-GGIV-GTMTGNCRFYDIKDN-QLYQQNQI 510 (755)
Q Consensus 459 ~-----~~~~~~~~---~~~~~V~~v~~s--pdg~-~la~-gs~dg~I~iwD~~~~-~~~~~~~~ 510 (755)
. ....+... .....+..|+.- .++. +|++ .-.+++..+||..+. ..+..+.+
T Consensus 209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 4 22333222 234566666654 3444 4433 345778999999874 44444443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.36 E-value=5 Score=40.90 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=64.8
Q ss_pred cCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec---------cCCcceEEEEEccC---CCeEEEEeC----
Q 004410 427 HNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT---------DIREIVSAVCYCPD---GKGGIVGTM---- 490 (755)
Q Consensus 427 h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~---------~~~~~V~~v~~spd---g~~la~gs~---- 490 (755)
.-...++|+|.| ++++|++--..|+|++++..++...... ........|+|+|+ ..+|.+...
T Consensus 25 ~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~ 103 (450)
T d1crua_ 25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (450)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCC
Confidence 345678999999 8998887756799999998877654322 12345788999995 344444211
Q ss_pred ---C----C--cEEEEECCCCeEeee-eeEEecccccCCCCCeEEEEEcCCCCCEEEEEEC
Q 004410 491 ---T----G--NCRFYDIKDNQLYQQ-NQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSA 541 (755)
Q Consensus 491 ---d----g--~I~iwD~~~~~~~~~-~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~ 541 (755)
+ . .+..+.......... ....+........+....|.|.| ++.++++.+.
T Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd 163 (450)
T d1crua_ 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (450)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecC
Confidence 0 1 133333332221111 11111111222345667899999 7776666553
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.22 E-value=4 Score=41.65 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=64.4
Q ss_pred CcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEEEEcCC--CCCEEEEEEC------
Q 004410 470 REIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGFQFSPS--DPSKVIVTSA------ 541 (755)
Q Consensus 470 ~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~--d~~~l~s~s~------ 541 (755)
-...++|+|.|||+.|++--..|.|++++..++.......+............+..|+|+|+ ...+|.+...
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 34678999999998877754579999999887765432221100011123467899999994 2334443211
Q ss_pred -C----Cc--EEEEECCcce-------eeEEEeeeccCCceEEEEEecCCCEEEEEeC
Q 004410 542 -D----SL--VRVLCGENVV-------GKFKASAFRVAGSQMFATFTSDGKHVVSPSE 585 (755)
Q Consensus 542 -D----g~--I~iwd~~~~~-------~~~~~~~~~~~~~v~~l~fspdg~~L~sgs~ 585 (755)
+ .. +..+...... ..+.............+.|.|||.+.++.++
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 2222222110 1111111122234578999999998887764
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.60 E-value=20 Score=34.30 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=116.7
Q ss_pred CEEEEEEc-CCCeEEEEeCCCcEEEE---eCC------CCeEEEEE---ecCCcEEEEEEee--CCCCEEEEEeCCCcEE
Q 004410 390 EVLDLSWS-KNGFLLSSSADKTVRLW---QVG------IDRCLRVF---SHNNYVTSVAFNP--VDDNYFISGSIDGKVR 454 (755)
Q Consensus 390 ~V~~l~~s-~~~~L~s~s~Dg~V~iW---dl~------s~~~~~~~---~h~~~V~~i~fsp--~d~~~l~sgs~Dg~V~ 454 (755)
.+..+... ....|+.-+..|.++.- ++. .|..+..+ .....|..+.... ....+|+..+..|.++
T Consensus 40 ~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iK 119 (323)
T d1wp5a_ 40 RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred eEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhhee
Confidence 34443333 33366667777776554 333 23343322 2344454444322 1367899999999999
Q ss_pred EEEcCCC-------eEE-EeccCCcceEEEEEccCCCeEEEEeCCCcEEEEECCCCeEeeeeeEEecccccCCCCCeEEE
Q 004410 455 IWEVRRC-------QVV-DYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDIKDNQLYQQNQICLQGKKKLPGKRITGF 526 (755)
Q Consensus 455 iwdl~~~-------~~~-~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~~~~~~~~~~~~~~~~~~~~~~~~I~~v 526 (755)
...+..- ... -.......+..+.+..+...++.++..|.+..|+...-........-..+..-..+..+..+
T Consensus 120 r~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~ 199 (323)
T d1wp5a_ 120 KTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSG 199 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEE
T ss_pred eccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCcccccccccccccccccchh
Confidence 9987432 111 12234455667777777788999999999999987754332111111112122234556655
Q ss_pred EEcCCCCCEEEEEECCCcEEEEECCcceee-------EEEeee-ccCCceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 004410 527 QFSPSDPSKVIVTSADSLVRVLCGENVVGK-------FKASAF-RVAGSQMFATFTSDGKHVVSPSEDSNIYIWNYS 595 (755)
Q Consensus 527 ~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~-------~~~~~~-~~~~~v~~l~fspdg~~L~sgs~Dg~I~iWd~~ 595 (755)
.+.+.+...|++.+..|..+.......... ...... .....+..+....+...|+..+..|.+.-.++.
T Consensus 200 ~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 200 QLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred hhccccccceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 554436778899999999888765542211 111001 122345555556666777777788887766654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.86 E-value=23 Score=34.61 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=60.6
Q ss_pred CEEEEEEcCCCeEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcEEEEEEeeCCCCEEEEEeCCCcEEEEEcCCCeEEEec-
Q 004410 390 EVLDLSWSKNGFLLSSSADKTVRLWQVGIDRCLRVF-SHNNYVTSVAFNPVDDNYFISGSIDGKVRIWEVRRCQVVDYT- 467 (755)
Q Consensus 390 ~V~~l~~s~~~~L~s~s~Dg~V~iWdl~s~~~~~~~-~h~~~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~~~~~~~~- 467 (755)
.|..++|+.+ .|+. ..++.+..++...-...... .....+..+.++| ..++....+|.+.++++..++.....
T Consensus 88 ~v~~vafs~d-~l~v-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD-QVLV-STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT-EEEE-EESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC-EEEE-EeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5788899755 3333 34566777877654333222 3456688888776 56777788999999999887543211
Q ss_pred -----cCCcceEEEEEccCCCeEEEEe
Q 004410 468 -----DIREIVSAVCYCPDGKGGIVGT 489 (755)
Q Consensus 468 -----~~~~~V~~v~~spdg~~la~gs 489 (755)
.-...+.+++|++.|+.++++.
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeC
Confidence 1234566677776666666653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.61 E-value=18 Score=35.54 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=82.4
Q ss_pred cEEEEEEeeCCCCEEEEEeCCCcEEEEEcCC----------CeEEEeccCCcceEEEEEccCCCeEEEEeCCCcEEEEEC
Q 004410 430 YVTSVAFNPVDDNYFISGSIDGKVRIWEVRR----------CQVVDYTDIREIVSAVCYCPDGKGGIVGTMTGNCRFYDI 499 (755)
Q Consensus 430 ~V~~i~fsp~d~~~l~sgs~Dg~V~iwdl~~----------~~~~~~~~~~~~V~~v~~spdg~~la~gs~dg~I~iwD~ 499 (755)
...-+++++ ...+|+.|+.++ +.|..+.. .........-..|..++|+-| .|++. .++.+..++.
T Consensus 38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~ 112 (381)
T d1xipa_ 38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL 112 (381)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence 355677777 667777777664 55655321 000000011125888999654 56554 4567888887
Q ss_pred CCCeEeeeeeEEecccccCCCCCeEEEEEcCCCCCEEEEEECCCcEEEEECCcceeeEEE---eeeccCCceEEEEEecC
Q 004410 500 KDNQLYQQNQICLQGKKKLPGKRITGFQFSPSDPSKVIVTSADSLVRVLCGENVVGKFKA---SAFRVAGSQMFATFTSD 576 (755)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~I~~v~fsp~d~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~~v~~l~fspd 576 (755)
..-...... ......+..+.++| ..++....++.+.++++.+....... ....-.+.+.+++|++.
T Consensus 113 ~~l~~~~~~--------~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k 181 (381)
T d1xipa_ 113 EELSEFRTV--------TSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR 181 (381)
T ss_dssp SSTTCEEEE--------EECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred ecccccccc--------ccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence 653322110 11234677778777 67888888999999998876432221 01223456788888888
Q ss_pred CCEEEEEe
Q 004410 577 GKHVVSPS 584 (755)
Q Consensus 577 g~~L~sgs 584 (755)
|+.++++.
T Consensus 182 gkq~v~~~ 189 (381)
T d1xipa_ 182 SFQSFAWR 189 (381)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEeC
Confidence 88887764
|