Citrus Sinensis ID: 004413
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 755 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGH2 | 1032 | Probable LRR receptor-lik | yes | no | 0.733 | 0.536 | 0.512 | 1e-164 | |
| C0LGH3 | 1033 | Probable LRR receptor-lik | no | no | 0.733 | 0.536 | 0.514 | 1e-160 | |
| C0LGG8 | 1038 | Probable LRR receptor-lik | no | no | 0.719 | 0.523 | 0.383 | 1e-103 | |
| C0LGG9 | 1035 | Probable LRR receptor-lik | no | no | 0.719 | 0.524 | 0.376 | 1e-102 | |
| C0LGE0 | 1014 | Probable LRR receptor-lik | no | no | 0.719 | 0.535 | 0.389 | 4e-92 | |
| C0LGG7 | 953 | Probable LRR receptor-lik | no | no | 0.670 | 0.530 | 0.366 | 2e-88 | |
| Q9FXF2 | 1021 | Probable LRR receptor-lik | no | no | 0.704 | 0.521 | 0.367 | 3e-85 | |
| C0LGN2 | 1020 | Probable leucine-rich rep | no | no | 0.707 | 0.523 | 0.356 | 4e-81 | |
| Q9ASQ6 | 1019 | Probable LRR receptor-lik | no | no | 0.687 | 0.509 | 0.383 | 1e-80 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.312 | 0.228 | 0.344 | 7e-31 |
| >sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust.
Identities = 288/562 (51%), Positives = 391/562 (69%), Gaps = 8/562 (1%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
++ N SG VP+E+G L +L +L +NNFSG++P EIG KL+Q+Y++S G G I
Sbjct: 152 MTFGINALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRI 211
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P ++A L ++ W +D T +IPDFIG+WTKL +LR G GPIPSS S L SL
Sbjct: 212 PLSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTE 271
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LR+ DI + SSSLDF+ +K+L+ L LRN +TG+IPS IGE +L+ +DLSFN L G I
Sbjct: 272 LRLGDISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPI 331
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-SNLQMNLV 241
P +LFN+ L +LFLGNN+L+G+ PTQK+++L+N+D+SYN LSG PSWV+ +L++NLV
Sbjct: 332 PASLFNLSQLTHLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLV 391
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRA-DNIVYEADNSSL 300
ANNFT + + V PGL+CLQ+NFPCNR Y++FSI CGG + R+ ++E ++
Sbjct: 392 ANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVTGALFEREDEDF 451
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
+S+ V+ ++W S+VG F N Y+ + Q T EL+Q++R+S S+RYYG
Sbjct: 452 GPASFFVSAGQRWAASSVGLFAGSSNNIYIATSQSQFVNTLDSELFQSARLSASSVRYYG 511
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN-R 419
LGLENG Y V+L FAE IL ++ W+ L RR FDIY+QG L KDFD+ + AG R
Sbjct: 512 LGLENGGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVR 571
Query: 420 AIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTA 479
A+ + + A VSENHLE+HLFWAGKGTCC+P QG YGP ISA+S F P+V+ PPS
Sbjct: 572 AVQRVYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSKG 631
Query: 480 GNKNHTGLIVGIAVPLGILGLIAISIVFYM--RRKKDNDDEEVLVGIDSKPNTFSYAELR 537
KN TG IVG+ V +G+L ++A ++F + RRK+ DDEE L+G+D KP F+Y+EL+
Sbjct: 632 --KNRTGTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEE-LLGMDVKPYIFTYSELK 688
Query: 538 SATQDFDPSNKLGEGGYGPVYK 559
SATQDFDPSNKLGEGG+GPVYK
Sbjct: 689 SATQDFDPSNKLGEGGFGPVYK 710
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGH3|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/562 (51%), Positives = 389/562 (69%), Gaps = 8/562 (1%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
++ N SG +P+E+G L +L +LS +NNFSG++P EIG KL+Q+Y++S G G +
Sbjct: 151 MTFGINALSGPIPKEIGLLTDLRLLSISSNNFSGSIPDEIGRCTKLQQIYIDSSGLSGGL 210
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P ++A L ++ W +D TG+IPDFIG+WTKL +LR G GPIP+S S L SL
Sbjct: 211 PVSFANLVELEQAWIADMELTGQIPDFIGDWTKLTTLRILGTGLSGPIPASFSNLTSLTE 270
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LR+ DI N +SSL+F+ +K+L+ L LRN +TG+IPS IGE +L+ LDLSFN L G I
Sbjct: 271 LRLGDISNGNSSLEFIKDMKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTI 330
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-SNLQMNLV 241
P +LFN+ L +LFLGNN+L+G+LPTQK ++L N+D+SYN LSG PSWV+ NL +NLV
Sbjct: 331 PASLFNLRQLTHLFLGNNTLNGSLPTQKGQSLSNVDVSYNDLSGSLPSWVSLPNLNLNLV 390
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRA-DNIVYEADNSSL 300
ANNFT + + V GL+CLQ+NFPCNR Y++FSI CGG ++R+ V+E ++ L
Sbjct: 391 ANNFTLEGLDNRVLSGLNCLQKNFPCNRGKGIYSDFSINCGGPEIRSVTEAVFEREDEDL 450
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
+S+ V+ ++W S+VG F N Y+ + Q T EL+Q++R+S SLRYYG
Sbjct: 451 GPASFVVSAGQRWAASSVGLFAGSSNNIYISTSQSQFVNTLDSELFQSARLSASSLRYYG 510
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN-R 419
LGLENG Y V+L FAE IL ++ W L RR FDIY+QG L KDFD+ + AG R
Sbjct: 511 LGLENGGYTVTLQFAEIQILGSTSNTWRGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVR 570
Query: 420 AIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTA 479
A+ + + A VS+NHLEIHLFWAGKGTCC+P QG YGP ISA+ F P+V PPS
Sbjct: 571 AVQREYKANVSQNHLEIHLFWAGKGTCCIPIQGAYGPLISAVGATPDFTPTVGNRPPSKG 630
Query: 480 GNKNHTGLIVGIAVPLGILGLIAISIVFYM--RRKKDNDDEEVLVGIDSKPNTFSYAELR 537
K+ TG IVG+ V +G+L +I+ ++F + RRK+ DDEE+L +D KP TF+Y+EL+
Sbjct: 631 --KSMTGTIVGVIVGVGLLSIISGVVIFIIRKRRKRYTDDEEIL-SMDVKPYTFTYSELK 687
Query: 538 SATQDFDPSNKLGEGGYGPVYK 559
SATQDFDPSNKLGEGG+GPVYK
Sbjct: 688 SATQDFDPSNKLGEGGFGPVYK 709
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/560 (38%), Positives = 334/560 (59%), Gaps = 17/560 (3%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+LSV N SG P +LG++ LT ++ N F+G LP +GNL L++L L++ G+
Sbjct: 141 ILSVIGNRLSGPFPPQLGDITTLTDVNLETNLFTGPLPRNLGNLRSLKELLLSANNFTGQ 200
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IP + + L+N+ +GKIPDFIGNWT L+ L QG S +GPIP S+S L +L
Sbjct: 201 IPESLSNLKNLTEFRIDGNSLSGKIPDFIGNWTLLERLDLQGTSMEGPIPPSISNLTNLT 260
Query: 122 SLRISDIYNVSS-SLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
LRI+D+ ++ S + +L + L LRN LI G IP IG + L+TLDLS N LTG
Sbjct: 261 ELRITDLRGQAAFSFPDLRNLMKMKRLVLRNCLIRGPIPEYIGSMSELKTLDLSSNMLTG 320
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
IP T N+ + N++FL NNSL+G +P + +N+DLS N+ + P P+ + L +NL
Sbjct: 321 VIPDTFRNLDAFNFMFLNNNSLTGPVPQFIINSKENLDLSDNNFTQP-PTLSCNQLDVNL 379
Query: 241 VANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADNSSL 300
+++ + +++ CL+ PC +A + + F I CGG +++ Y D +S
Sbjct: 380 ISSYPSVTDNSVQ-----WCLREGLPCPEDAKQSSLF-INCGGSRLKIGKDTYTDDLNSR 433
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
S+++ +E+WG S+ G + +E+ Y+ + TPE Y+T+R+SP SL+YYG
Sbjct: 434 GQSTFSSV-SERWGYSSSGVWLGKEDAGYLATDRFNLINGSTPEYYKTARLSPQSLKYYG 492
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
L L G Y + L FAE I+ + + + SL RR+FDIY+QG L +DF+I++ AGG +
Sbjct: 493 LCLRRGSYKLQLHFAE--IMFSNDQTFNSLGRRIFDIYVQGNLLERDFNIAERAGGVGKP 550
Query: 421 IIKNFNAT-VSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTA 479
I+ + V+ + LEIHL W GKGT +P +G YGP ISA+++ FK +G P S
Sbjct: 551 FIRQIDGVQVNGSTLEIHLQWTGKGTNVIPTRGVYGPLISAITITPNFKVD-TGKPLS-- 607
Query: 480 GNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSA 539
N G+++ G+L L+ + + Y+ K+ +++EE L G+D + +F+ +++ A
Sbjct: 608 -NGAVAGIVIAACAVFGLLVLVILRLTGYLGGKEVDENEE-LRGLDLQTGSFTLKQIKRA 665
Query: 540 TQDFDPSNKLGEGGYGPVYK 559
T +FDP NK+GEGG+GPVYK
Sbjct: 666 TNNFDPENKIGEGGFGPVYK 685
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/560 (37%), Positives = 334/560 (59%), Gaps = 17/560 (3%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+L+V N SG P +LG + LT + +N F+G LPP +GNL L++L ++S G
Sbjct: 139 ILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGR 198
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IP + + L+N+ +GKIPDFIGNWT+L L QG S +GPIP+S+S L +L
Sbjct: 199 IPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLT 258
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG-ELQNLQTLDLSFNNLTG 180
LRI+D+ +S + ++ N+ L LRN LI IP IG + L+ LDLS N L G
Sbjct: 259 ELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNG 318
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
IP T ++ + N+++L NNSL+G +P ++ QNIDLSYN+ + P P+ + L +NL
Sbjct: 319 TIPDTFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQP-PTLSCNQLDVNL 377
Query: 241 VANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADNSSL 300
+++ + +++ CL+++ PC +A +++ I CGG +++ D Y D +
Sbjct: 378 ISSYPSVTNNSVQ-----WCLRKDLPCPGDA-HHSSLFINCGGNRLKVDKDEYADDLNKR 431
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
AS+++ +E+WG S+ G + + Y+ + TPE Y+T+R++ SL+YYG
Sbjct: 432 GASTFSSV-SERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYG 490
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
L + G Y V L FAE I+ + + + SL RR+FDIY+QG L +DF+I++ AGG +
Sbjct: 491 LCMRRGSYKVQLYFAE--IMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKP 548
Query: 421 IIKNFN-ATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTA 479
++ + V+ + LEIHL W GKGT +P +G YGP ISA++V FK +G P S
Sbjct: 549 FLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVD-TGKPLS-- 605
Query: 480 GNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSA 539
N G+++ V G+L L+ + + Y+ K+ +++EE L G+D + +F+ +++ A
Sbjct: 606 -NGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEE-LRGLDLQTGSFTLKQIKRA 663
Query: 540 TQDFDPSNKLGEGGYGPVYK 559
T +FDP NK+GEGG+GPVYK
Sbjct: 664 TNNFDPENKIGEGGFGPVYK 683
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGE0|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 221/567 (38%), Positives = 321/567 (56%), Gaps = 24/567 (4%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS N SG P+ L L L LS N FSG +PP+IG L LE+L+L S G +
Sbjct: 142 LSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPL 201
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
L+N+ + SD FTG IPDFI NWT++ L+ G GPIPSS+S L SL
Sbjct: 202 TEKLGLLKNLTDMRISDNNFTGPIPDFISNWTRILKLQMHGCGLDGPIPSSISSLTSLTD 261
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LRISD+ SS + +L+++ L LR I G IP IG+L+ L+TLDLSFN L+G+I
Sbjct: 262 LRISDLGGKPSSFPPLKNLESIKTLILRKCKIIGPIPKYIGDLKKLKTLDLSFNLLSGEI 321
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS--GPFPSWVTSNLQMNL 240
P + N+ ++++L N L+G +P E +N+D+S+N+ + PS + + NL
Sbjct: 322 PSSFENMKKADFIYLTGNKLTGGVPNYFVERNKNVDVSFNNFTDESSIPSHDCNRVTSNL 381
Query: 241 VANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFS--IKCGGKQMRADN-IVYEADN 297
V + ++S+ G C + PC + RY + I CGG +++ D I Y+AD+
Sbjct: 382 VESFALGNKSH----KGSTCFLQRMPC-VHPKRYHLYKLYINCGGGEVKVDKEITYQADD 436
Query: 298 SSLSASSYAVTNTEKWGVSNVGFFYERENPA---YVLNTLGQVTGTRTPE--LYQTSRIS 352
AS Y + ++W +S+ G F + ++ A V NT +P LY+T+R+S
Sbjct: 437 EPKGASMYVLGANKRWALSSTGNFMDNDDDADEYTVQNTSRLSVNASSPSFGLYRTARVS 496
Query: 353 PGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISK 412
P SL YYG+ L NG Y V+L FAE D +T SL +R+FDIY+Q L K+F+I +
Sbjct: 497 PLSLTYYGICLGNGNYTVNLHFAEIIFTDDNT--LYSLGKRLFDIYVQDQLVIKNFNIQE 554
Query: 413 EAGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVS 472
A G + IIK+F V+++ L+I L WAGKGT +P +G YGP ISA+SV FKP V
Sbjct: 555 AARGSGKPIIKSFLVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVEPNFKPPV- 613
Query: 473 GLPPSTAGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFS 532
+ L VG+ V L L I VF+ +R+ ND ++ L G+D + TF+
Sbjct: 614 ------YYDTKDIILKVGVPVAAATLLLFIIVGVFWKKRRDKNDIDKELRGLDLQTGTFT 667
Query: 533 YAELRSATQDFDPSNKLGEGGYGPVYK 559
++++AT +FD + K+GEGG+G VYK
Sbjct: 668 LRQIKAATDNFDVTRKIGEGGFGSVYK 694
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGG7|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 208/567 (36%), Positives = 297/567 (52%), Gaps = 61/567 (10%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
N +G +P+E GN+ LT L N SG LP E+GNL ++Q+ L+S GEIPST+A
Sbjct: 120 NRLTGPIPKEFGNITTLTSLVLEANQLSGELPLELGNLPNIQQMILSSNNFNGEIPSTFA 179
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD 127
KL ++ SD +G IPDFI WTKL+ L Q + GPIP +++ L L LRISD
Sbjct: 180 KLTTLRDFRVSDNQLSGTIPDFIQKWTKLERLFIQASGLVGPIPIAIASLVELKDLRISD 239
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
+ S + ++K + L LRN +TG +P +G++ + + LDLSFN L+G IP T
Sbjct: 240 LNGPESPFPQLRNIKKMETLILRNCNLTGDLPDYLGKITSFKFLDLSFNKLSGAIPNTYI 299
Query: 188 NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTF 247
N+ Y++ N L+G++P IDLSY NNF+
Sbjct: 300 NLRDGGYIYFTGNMLNGSVPDWMVNKGYKIDLSY---------------------NNFSV 338
Query: 248 DRSN-ISVFPGLHCLQRNFPCNRNAPRYAN-FSIKCGGKQMRADNIVYEADNSSLSASSY 305
D +N + + + RN+ C P+ N I CGG +M + +YE+D S Y
Sbjct: 339 DPTNAVCKYNNVLSCMRNYQC----PKTFNALHINCGGDEMSINGTIYESDKYDRLESWY 394
Query: 306 AVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPE--LYQTSRISPGSLRYYGLGL 363
N W +NVG F + ++ + + + LY +RIS SL YY L L
Sbjct: 395 ESRN--GWFSNNVGVFVDDKHVPERVTIESNSSELNVVDFGLYTQARISAISLTYYALCL 452
Query: 364 ENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRAIIK 423
ENG YNV+L FAE I+ ++SL RR FDIYIQ L KDF+I+KEA +IK
Sbjct: 453 ENGNYNVNLHFAE--IMFNGNNNYQSLGRRFFDIYIQRKLEVKDFNIAKEAKDVGNVVIK 510
Query: 424 NFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAGNKN 483
F + + LEI L+WAG+GT +PK+ YGP ISA+SV S+ PS N
Sbjct: 511 TFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPLISAISVDSSVNPS--------PRNGM 562
Query: 484 HTGLIVGIAVPLGILGLIAISIVF-------YMRRK----KDNDDEEVLVGIDSKPNTFS 532
TG + + V IL + + +VF Y+R K KD E+++ +FS
Sbjct: 563 STGTLHTLVV---ILSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIA------SFS 613
Query: 533 YAELRSATQDFDPSNKLGEGGYGPVYK 559
+++ AT +FD +N++GEGG+GPVYK
Sbjct: 614 LRQIKIATNNFDSANRIGEGGFGPVYK 640
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 211/574 (36%), Positives = 307/574 (53%), Gaps = 42/574 (7%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+S+ N SG +P+E GN LT L +N FSGT+P E+GNL L++L L+S G
Sbjct: 150 FISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGT 208
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
+P++ A+L+NM +D +G IP +I NW +L+ L + GPIPS +S L++L
Sbjct: 209 LPASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVLSNLV 268
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
+LRISDI + ++ LT + L+N I+G IP+ + L+ L+TLDLSFN L G
Sbjct: 269 NLRISDIRGPVQPFPSLKNVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSFNKLVGG 328
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
IP + +L ++ L N L G P + + +DLSYN+L P MNL
Sbjct: 329 IP-SFAQAENLRFIILAGNMLEGDAPDELLRDGITVDLSYNNLKWQSPESRACRPNMNLN 387
Query: 242 ANNF--TFDRSNISVFPGLHCLQRNFPCNRNAPRYAN-FSIKCGGKQM----RADNIVYE 294
N F T + + P + ++F C PRY++ + CGG M + +YE
Sbjct: 388 LNLFQSTSTKKSSKFLPCI----KDFKC----PRYSSCLHVNCGGSDMYVKEKKTKELYE 439
Query: 295 AD-NSSLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISP 353
D N A+ Y + WG S+ G F + N T+ V + +LY+++RI+P
Sbjct: 440 GDGNVEGGAAKYFLKPDANWGFSSTGDFMDDNNFQNTRFTMF-VPASNQSDLYKSARIAP 498
Query: 354 GSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKE 413
SL Y+ LENG Y ++L FAE + E + L RR+FDIYIQ L KDF+I E
Sbjct: 499 VSLTYFHACLENGNYTINLDFAEIRFTN--DENYNRLGRRLFDIYIQEKLVAKDFNIMDE 556
Query: 414 AGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPS--- 470
A G IIK A V+ + L I L WAGKGT +P +G YGP ISA+S+VS KP
Sbjct: 557 AKGAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKPCERP 616
Query: 471 VSGLPPSTAGNKNHTGLIVGIAVP---LGILGLIAISIVF--YMRRKKDNDDEEVLVGID 525
+G+ P + +GI P + ILG + I R++KD +EE+ G
Sbjct: 617 KTGMSPGAY-------IAIGIGAPCLIIFILGFLWICGCLPRCGRQRKDPYEEELPSG-- 667
Query: 526 SKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
TF+ +++ AT DF+P+NK+GEGG+G V+K
Sbjct: 668 ----TFTLRQIKFATDDFNPTNKIGEGGFGAVFK 697
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (776), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 204/573 (35%), Positives = 307/573 (53%), Gaps = 39/573 (6%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+S+ N SGS+P+ELGNL L+ L N SG +PPE+GNL L++L L+S GEI
Sbjct: 139 ISLLGNRISGSIPKELGNLTTLSGLVLEYNQLSGKIPPELGNLPNLKRLLLSSNNLSGEI 198
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
PST+AKL + L SD FTG IPDFI NW L+ L Q + GPIPS++ L +L
Sbjct: 199 PSTFAKLTTLTDLRISDNQFTGAIPDFIQNWKGLEKLVIQASGLVGPIPSAIGLLGTLTD 258
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LRI+D+ S + ++ ++ L LRN +TG +P+ +G+ + L+ LDLSFN L+G I
Sbjct: 259 LRITDLSGPESPFPPLRNMTSMKYLILRNCNLTGDLPAYLGQNRKLKNLDLSFNKLSGPI 318
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMN--- 239
P T + +++++ +N L+G +P+ + ID++YN+ S T Q
Sbjct: 319 PATYSGLSDVDFIYFTSNMLNGQVPSWMVDQGDTIDITYNNFSKD----KTEECQQKSVN 374
Query: 240 -------LVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIV 292
LVANN SN+S CL + + C + + I CGG ++ ++
Sbjct: 375 TFSSTSPLVANN----SSNVS------CLSK-YTCPKT---FYGLHINCGGNEITSNETK 420
Query: 293 YEADNSSLSASSYAVTNTEKWGVSNVGFFYERE-----NPAYVLNTLGQVTGTRTP-ELY 346
Y+AD + Y N W SN G F + + + ++ ++T + LY
Sbjct: 421 YDADTWD-TPGYYDSKN--GWVSSNTGNFLDDDRTNNGKSKWSNSSELKITNSSIDFRLY 477
Query: 347 QTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWK 406
+R+S SL Y L L G Y V+L FAE I+ + +L RR FDIY+QG K
Sbjct: 478 TQARLSAISLTYQALCLGKGNYTVNLHFAE--IMFNEKNMYSNLGRRYFDIYVQGKREVK 535
Query: 407 DFDISKEAGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSA 466
DF+I EA G +A++K F V+ LEI L WAGKGT +P +G YGP ISA+SV
Sbjct: 536 DFNIVDEAKGVGKAVVKKFPVMVTNGKLEIRLQWAGKGTQAIPVRGVYGPLISAVSVDPD 595
Query: 467 FKPSVSGLPPSTAGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDS 526
F P + G+ T + IA + ++ LI + + + + E+ +D
Sbjct: 596 FIPPKEPGTGTGGGSSVGTVVGSVIASTVFLVLLIGGILWWRGCLRPKSQMEKDFKNLDF 655
Query: 527 KPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
+ ++FS +++ AT +FDP+NK+GEGG+GPV+K
Sbjct: 656 QISSFSLRQIKVATDNFDPANKIGEGGFGPVHK 688
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 223/581 (38%), Positives = 322/581 (55%), Gaps = 62/581 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+SV N SG++P L N K LT L N FSG +P E+GNL L L L S G +
Sbjct: 147 ISVCANNLSGNLPAGLQNFKNLTFLGVEGNQFSGPIPDELGNLTSLTGLELASNKFTGIL 206
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P T A+L N++ + D FTG IP +IGNWT+L+ L + GPIP ++ +L +L
Sbjct: 207 PGTLARLVNLERVRICDNNFTGIIPAYIGNWTRLQKLHLYASGLTGPIPDAVVRLENLLE 266
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L +SD + S + +S K L L LRN ++G IPS I L +L+ LDLSFN L G +
Sbjct: 267 LSLSDTTGIKSFPN--LSSKGLKRLILRNVGLSGPIPSYIWNLTDLKILDLSFNKLNGIV 324
Query: 183 ------PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNL 236
P+ ++ G+L L N SG L +S IDLSYN+ SW +S+
Sbjct: 325 QGVQNPPKNIYLTGNL----LSGNIESGGLLNSQSY----IDLSYNNF-----SW-SSSC 370
Query: 237 QMNLVANNF--TFDRSNISVFPGLHCLQRNFPCN--RNAPRYANF-SIKCGGKQMRADN- 290
Q N + ++ ++N++ P PC N +Y F I CGG+++ N
Sbjct: 371 QKGSTINTYQSSYSKNNLTGLP---------PCAVPANCKKYQRFLHINCGGEEVSIRNS 421
Query: 291 ---IVYEADNSSLSASSYAVTNTE--KWGVSNVGFFYE--RENPAYVLNTLGQVTGTRTP 343
I Y+ DNS + A +N + WGVSN G F + ++ Y +T ++G P
Sbjct: 422 LGKITYQTDNSR---QTNAASNQQFDYWGVSNTGDFTDDNSDHDEYYTSTNLTLSGDY-P 477
Query: 344 ELYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTL 403
+LY+T+R S SL YY LENG YNV L F E D+ E + L RR+FD+Y+QG L
Sbjct: 478 DLYKTARRSALSLVYYAFCLENGNYNVKLHFMEIQFSDK--EVYSRLGRRIFDVYVQGKL 535
Query: 404 RWKDFDISKEAGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSV 463
+DF+I+KEA G + +IK NATV+ + LEI L+WAGKGT +PK+G+YGP ISA+S+
Sbjct: 536 FLRDFNINKEANGNMKPVIKEINATVTNHMLEIRLYWAGKGTTLIPKRGNYGPLISAISL 595
Query: 464 VSAFKPSVSGLPPSTAGNKNHTG--LIVGIAVPLGILGLIAISIVFYMR---RKKDNDDE 518
+ +P + G+ + K+H LI+G + L + L+A+ I Y R R+ +N E
Sbjct: 596 CHSQEP-LCGVEKT----KHHIKYPLILGASGALVTIVLLAVGI--YARGIYRRDNNRRE 648
Query: 519 EVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
L + FS+ +L++AT +FD +NKLGEGG+G V+K
Sbjct: 649 RDLRAQGLQTVCFSWRQLQTATNNFDQANKLGEGGFGSVFK 689
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 11/247 (4%)
Query: 3 LSVAHNVFSGSVPRELGNLKE-LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L V +N G +P + NL LT L G N SGT+P +IGNL L++L L + GE
Sbjct: 349 LDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGE 408
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
+P ++ KL N+Q + +G+IP + GN T+L+ L NSF G IP SL + L
Sbjct: 409 LPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLL 468
Query: 122 SLRISDIYNVSSSL-DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
L + D ++ ++ ++ + +L + L N +TG P +G+L+ L L S+N L+G
Sbjct: 469 DLWM-DTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSG 527
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLP-TQKSENLQNIDLSYNHLSGPFPSWVTS----- 234
++P+ + S+ +LF+ NS G +P + +L+N+D S N+LSG P ++ S
Sbjct: 528 KMPQAIGGCLSMEFLFMQGNSFDGAIPDISRLVSLKNVDFSNNNLSGRIPRYLASLPSLR 587
Query: 235 --NLQMN 239
NL MN
Sbjct: 588 NLNLSMN 594
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 755 | ||||||
| 224072359 | 1016 | predicted protein [Populus trichocarpa] | 0.737 | 0.548 | 0.720 | 0.0 | |
| 296089254 | 1037 | unnamed protein product [Vitis vinifera] | 0.740 | 0.539 | 0.738 | 0.0 | |
| 359484008 | 1037 | PREDICTED: probable LRR receptor-like se | 0.741 | 0.540 | 0.734 | 0.0 | |
| 224053719 | 1041 | predicted protein [Populus trichocarpa] | 0.737 | 0.535 | 0.722 | 0.0 | |
| 225444253 | 1048 | PREDICTED: probable LRR receptor-like se | 0.739 | 0.532 | 0.711 | 0.0 | |
| 296089258 | 2282 | unnamed protein product [Vitis vinifera] | 0.739 | 0.244 | 0.711 | 0.0 | |
| 255571932 | 1040 | ATP binding protein, putative [Ricinus c | 0.739 | 0.536 | 0.677 | 0.0 | |
| 359484016 | 1039 | PREDICTED: probable LRR receptor-like se | 0.727 | 0.528 | 0.642 | 0.0 | |
| 359484024 | 1003 | PREDICTED: probable LRR receptor-like se | 0.728 | 0.548 | 0.628 | 0.0 | |
| 359495319 | 1000 | PREDICTED: probable LRR receptor-like se | 0.733 | 0.554 | 0.630 | 0.0 |
| >gi|224072359|ref|XP_002303698.1| predicted protein [Populus trichocarpa] gi|222841130|gb|EEE78677.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/558 (72%), Positives = 461/558 (82%), Gaps = 1/558 (0%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+AHN FSG++P+ELGNLKELT+LSFG NNFSGTLPPE+GNL LE+LY+NS G GGEI
Sbjct: 125 LSIAHNAFSGTIPKELGNLKELTLLSFGVNNFSGTLPPELGNLVNLEELYINSCGLGGEI 184
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
PST+A L+ ++ LWASD FTG IPDFIGNWT L SLRFQGNSF+GPIP S S L SL+S
Sbjct: 185 PSTFANLQRLRVLWASDDSFTGNIPDFIGNWTGLTSLRFQGNSFEGPIPLSFSNLTSLNS 244
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LRISD+ N+SS+LDF+ +LKNLTDL+LRNALI GSIPS IGELQ L LDLSFNNLTGQ+
Sbjct: 245 LRISDLSNMSSTLDFIKNLKNLTDLNLRNALINGSIPSDIGELQTLNRLDLSFNNLTGQV 304
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
P LF + SL YLFLGNNSLSGTLP QKS+ LQ IDLSYN+L+G FPSWV SN+Q+NLVA
Sbjct: 305 PSALFPMSSLEYLFLGNNSLSGTLPEQKSDTLQTIDLSYNYLTGTFPSWVASNVQLNLVA 364
Query: 243 NNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNSSLS 301
NNFTFD SNISV PGL+CLQRNFPCNR+ PRYANFSIKCGG +MR AD VYEA+NSSLS
Sbjct: 365 NNFTFDNSNISVLPGLNCLQRNFPCNRDNPRYANFSIKCGGPEMRTADGTVYEAENSSLS 424
Query: 302 ASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYGL 361
A+S++VT+TEKW VSNVG F +R +P YV NTL QV T PELYQTSRISPGSLRY+GL
Sbjct: 425 AASFSVTSTEKWAVSNVGLFADRRSPDYVENTLTQVLSTNIPELYQTSRISPGSLRYFGL 484
Query: 362 GLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRAI 421
GLENGPY V LLFAET DRS++ WESL RRVFDIYIQG+ + KDFDISKEAGG R+I
Sbjct: 485 GLENGPYTVHLLFAETAFADRSSQTWESLGRRVFDIYIQGSRQLKDFDISKEAGGVERSI 544
Query: 422 IKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAGN 481
+ FN TVSENHLEIHLFWAGKGTCC P QG YGP ISAL+VV F P+VSG+PPST
Sbjct: 545 TRIFNVTVSENHLEIHLFWAGKGTCCTPVQGYYGPIISALNVVPGFTPTVSGIPPSTRKE 604
Query: 482 KNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSATQ 541
K+ TG++VGI+V G++ L I V Y+ RKKD++DEEV G+ PNTFSYA+LR AT
Sbjct: 605 KSRTGMVVGISVSAGVVCLTLIFAVVYIMRKKDSEDEEVFPGMGPGPNTFSYAQLRGATD 664
Query: 542 DFDPSNKLGEGGYGPVYK 559
DF PSN LGEGG+G VYK
Sbjct: 665 DFSPSNMLGEGGFGAVYK 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089254|emb|CBI39026.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/563 (73%), Positives = 473/563 (84%), Gaps = 4/563 (0%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LLS+AHN SG++P ELGNL+ELTVLS +NNFSGTLPPE+GNL L +LY+NS G GGE
Sbjct: 156 LLSLAHNALSGTIPMELGNLQELTVLSLSSNNFSGTLPPELGNLVNLRELYINSLGVGGE 215
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+A L NMQ + ASD PF+GKIPDFIGNWTKL SLRFQGNSF+GPIPSS SKL SL
Sbjct: 216 IPSTFANLENMQVMRASDCPFSGKIPDFIGNWTKLTSLRFQGNSFEGPIPSSFSKLTSLS 275
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SLRISD++NVSSSLDF+ LKNLTDL LRNALITGSIPS IGE Q+LQ LDLSFNNLTG
Sbjct: 276 SLRISDLFNVSSSLDFIKDLKNLTDLVLRNALITGSIPSYIGEFQSLQRLDLSFNNLTGG 335
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
IP +LFN+GSL LFLGNNSLSGTLPTQKS+ LQNIDLSYN LSG FPSWVTS LQ+NLV
Sbjct: 336 IPSSLFNLGSLANLFLGNNSLSGTLPTQKSKQLQNIDLSYNELSGSFPSWVTSGLQLNLV 395
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNSSL 300
ANNFTFD SN S+ PGL+CLQRNFPCN+N PRYANFSIKCGG +MR A+ IVYEA+NS+L
Sbjct: 396 ANNFTFDSSNRSLLPGLNCLQRNFPCNKNTPRYANFSIKCGGSEMRNAEGIVYEAENSTL 455
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
A+SY VT+TEKW VSNVG F +R NP+YV N L QVTGT TPEL+Q+SRISPGSLRYYG
Sbjct: 456 GAASYYVTSTEKWAVSNVGLFSDRSNPSYVDNNLMQVTGTNTPELFQSSRISPGSLRYYG 515
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
LGLENGPY VSL FAET DR T+ WESL RRVFDIYIQG L++KDFDISKEAGG RA
Sbjct: 516 LGLENGPYIVSLEFAETVFKDRDTQTWESLGRRVFDIYIQGALQFKDFDISKEAGGVERA 575
Query: 421 IIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAG 480
+ K F ATVSEN+LEIHLFWAGKGTCC P QG YGP+ISALSVVS F P+V+G PP
Sbjct: 576 LEKKFYATVSENYLEIHLFWAGKGTCCNPIQGYYGPSISALSVVSDFTPTVAGNPPIPPS 635
Query: 481 NKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKD--NDDEEVLVGIDSKPNTFSYAELRS 538
KN+TGLIVG+AV +G++ +I I V Y++RK N+DEE L GI +PNTFSY+ELR+
Sbjct: 636 KKNNTGLIVGVAVSVGVVSMILICSVLYIKRKASYVNEDEEFL-GIGPRPNTFSYSELRT 694
Query: 539 ATQDFDPSNKLGEGGYGPVYKKT 561
AT+DF+P+NKLGEGG+GPVYK T
Sbjct: 695 ATEDFNPANKLGEGGFGPVYKGT 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484008|ref|XP_002272404.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/564 (73%), Positives = 472/564 (83%), Gaps = 4/564 (0%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LLS+AHN SG++P ELGNL+ELTVLS +NNFSGTLPPE+GNL L +LY+NS G GGE
Sbjct: 111 LLSLAHNALSGTIPMELGNLQELTVLSLSSNNFSGTLPPELGNLVNLRELYINSLGVGGE 170
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+A L NMQ + ASD PF+GKIPDFIGNWTKL SLRFQGNSF+GPIPSS SKL SL
Sbjct: 171 IPSTFANLENMQVMRASDCPFSGKIPDFIGNWTKLTSLRFQGNSFEGPIPSSFSKLTSLS 230
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SLRISD++NVSSSLDF+ LKNLTDL LRNALITGSIPS IGE Q+LQ LDLSFNNLTG
Sbjct: 231 SLRISDLFNVSSSLDFIKDLKNLTDLVLRNALITGSIPSYIGEFQSLQRLDLSFNNLTGG 290
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
IP +LFN+GSL LFLGNNSLSGTLPTQKS+ LQNIDLSYN LSG FPSWVTS LQ+NLV
Sbjct: 291 IPSSLFNLGSLANLFLGNNSLSGTLPTQKSKQLQNIDLSYNELSGSFPSWVTSGLQLNLV 350
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNSSL 300
ANNFTFD SN S+ PGL+CLQRNFPCN+N PRYANFSIKCGG +MR A+ IVYEA+NS+L
Sbjct: 351 ANNFTFDSSNRSLLPGLNCLQRNFPCNKNTPRYANFSIKCGGSEMRNAEGIVYEAENSTL 410
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
A+SY VT+TEKW VSNVG F +R NP+YV N L QVTGT TPEL+Q+SRISPGSLRYYG
Sbjct: 411 GAASYYVTSTEKWAVSNVGLFSDRSNPSYVDNNLMQVTGTNTPELFQSSRISPGSLRYYG 470
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
LGLENGPY VSL FAET DR T+ WESL RRVFDIYIQG L++KDFDISKEAGG RA
Sbjct: 471 LGLENGPYIVSLEFAETVFKDRDTQTWESLGRRVFDIYIQGALQFKDFDISKEAGGVERA 530
Query: 421 IIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAG 480
+ K F ATVSEN+LEIHLFWAGKGTCC P QG YGP+ISALSVVS F P+V+G PP
Sbjct: 531 LEKKFYATVSENYLEIHLFWAGKGTCCNPIQGYYGPSISALSVVSDFTPTVAGNPPIPPS 590
Query: 481 NKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKD--NDDEEV-LVGIDSKPNTFSYAELR 537
KN+TGLIVG+AV +G++ +I I V Y++RK N+DE +GI +PNTFSY+ELR
Sbjct: 591 KKNNTGLIVGVAVSVGVVSMILICSVLYIKRKASYVNEDEVAEFLGIGPRPNTFSYSELR 650
Query: 538 SATQDFDPSNKLGEGGYGPVYKKT 561
+AT+DF+P+NKLGEGG+GPVYK T
Sbjct: 651 TATEDFNPANKLGEGGFGPVYKGT 674
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053719|ref|XP_002297945.1| predicted protein [Populus trichocarpa] gi|222845203|gb|EEE82750.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/559 (72%), Positives = 468/559 (83%), Gaps = 2/559 (0%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+AHN FSG++P ELGNLKELT+LS G NNFSGTLPPE+G L LEQLY+NS G GGEI
Sbjct: 153 LSIAHNAFSGTIPTELGNLKELTLLSIGINNFSGTLPPELGQLVNLEQLYVNSCGLGGEI 212
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
PST+ L+ M ASDA FTG IPDFIGNWT+L SLRFQGNSF+GPIPSS S L SL+S
Sbjct: 213 PSTFVNLKKMTIFSASDAAFTGNIPDFIGNWTRLTSLRFQGNSFEGPIPSSFSNLTSLES 272
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGEL-QNLQTLDLSFNNLTGQ 181
LRISD+ NVSS+LDF+ +LK+LTDL+LRNALI+GSIPS IGE+ Q L LDLSFNNLTGQ
Sbjct: 273 LRISDLSNVSSTLDFIKNLKSLTDLTLRNALISGSIPSDIGEIFQTLDRLDLSFNNLTGQ 332
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
+P LFN+ SL YLFLGNNSL GTLP QKS LQ IDLSYN+LSG FPSWVTSN+Q+NLV
Sbjct: 333 VPSALFNMSSLQYLFLGNNSLIGTLPNQKSSKLQTIDLSYNYLSGTFPSWVTSNIQLNLV 392
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNSSL 300
ANNFTFD SNISV PGL+CLQRNFPCNRN P YANFSIKCGG MR AD VYEA+NSS+
Sbjct: 393 ANNFTFDSSNISVLPGLNCLQRNFPCNRNPPLYANFSIKCGGPMMRTADGTVYEAENSSI 452
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
SA+S+ VT+TEKW VSN G + +RENP+YV N L QVTGT TPELYQTSRISPGSLRYYG
Sbjct: 453 SAASFTVTSTEKWAVSNAGLYADRENPSYVENNLKQVTGTNTPELYQTSRISPGSLRYYG 512
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
LGL+NGPY ++LLFAET RS++ W+SLARRVFDIYIQG + KDFDIS EAGG +RA
Sbjct: 513 LGLQNGPYTINLLFAETRFAARSSQTWDSLARRVFDIYIQGNRQLKDFDISMEAGGVDRA 572
Query: 421 IIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAG 480
I K FN TVSENHLEIHLFWAGKGTCC P QG YGP ISAL+VV F P+VSG+P ST
Sbjct: 573 ITKTFNVTVSENHLEIHLFWAGKGTCCNPVQGYYGPIISALNVVPDFTPNVSGIPSSTRK 632
Query: 481 NKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSAT 540
K+ TG+IVG+++ +G++ LI IS++ Y+R KKD++DEEVL+G+ +PNTFSY++LR+AT
Sbjct: 633 EKSRTGVIVGVSISVGVVSLILISVLLYIRLKKDSEDEEVLLGMGPRPNTFSYSQLRTAT 692
Query: 541 QDFDPSNKLGEGGYGPVYK 559
+DF PSNKLGEGGYGPVYK
Sbjct: 693 EDFSPSNKLGEGGYGPVYK 711
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444253|ref|XP_002273016.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/562 (71%), Positives = 464/562 (82%), Gaps = 4/562 (0%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LLS+AHN FSG++P+ELGNL EL VLS G+NNFSG LPPE+GNL+KL +LY+NS GAGGE
Sbjct: 156 LLSIAHNAFSGTIPKELGNLTELEVLSLGSNNFSGNLPPELGNLSKLRELYINSCGAGGE 215
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+A+L N+Q + SD+PFTGKIP+FIGN+T+L SLRFQGNSF+GPIPSS SKL SL
Sbjct: 216 IPSTFAELLNLQVMEGSDSPFTGKIPNFIGNFTRLTSLRFQGNSFEGPIPSSFSKLISLS 275
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SLRISD+YNVSSSLDF+ LKNLTDL+LRNALI+GSIPS GE Q LQ LDLSFNNLTG+
Sbjct: 276 SLRISDLYNVSSSLDFIRDLKNLTDLNLRNALISGSIPSFTGEFQKLQRLDLSFNNLTGE 335
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT--SNLQMN 239
+P +LFN +L LFLGNNSLSG+LP QKSE L+NIDLSYN LSG FPSWVT S LQ+N
Sbjct: 336 VPSSLFNSSALTDLFLGNNSLSGSLPAQKSEELKNIDLSYNQLSGSFPSWVTSASGLQLN 395
Query: 240 LVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNS 298
LVANNF F SN S F GL+CLQRNFPCNRN P YANFS+ CGG++MR AD VYE DNS
Sbjct: 396 LVANNFIFGSSNSSFFQGLNCLQRNFPCNRNTPLYANFSVNCGGQEMRIADGTVYEVDNS 455
Query: 299 SLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRY 358
SL A+SY VTNTEKW VSNVG F + NPAY+ N L QV T TPEL+QTSR+SPGSLRY
Sbjct: 456 SLGAASYYVTNTEKWAVSNVGLFSDSSNPAYLENNLKQVADTSTPELFQTSRVSPGSLRY 515
Query: 359 YGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN 418
YGLGLENG Y VSL FAET RSTE WESL RRVFDIYIQG+L+ KDFDISKEAGG +
Sbjct: 516 YGLGLENGNYTVSLEFAETKFASRSTETWESLGRRVFDIYIQGSLQLKDFDISKEAGGVD 575
Query: 419 RAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPST 478
+A+ K FNATVSEN+LEIHLFWAGKGTCC+P QG YGP+ISALSVVS F PSVSG+P
Sbjct: 576 KALEKKFNATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALSVVSDFTPSVSGIPSIP 635
Query: 479 AGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDN-DDEEVLVGIDSKPNTFSYAELR 537
KN+TGLIVG+ V +G + I I VFYM+ + N +++E L+GI +PNTF+YAELR
Sbjct: 636 PSKKNNTGLIVGVVVAVGSVSFILICAVFYMKMRASNINEDEELLGIGPRPNTFTYAELR 695
Query: 538 SATQDFDPSNKLGEGGYGPVYK 559
+AT+DF+P+NKLGEGG+GPVYK
Sbjct: 696 TATEDFNPTNKLGEGGFGPVYK 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089258|emb|CBI39030.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/562 (71%), Positives = 464/562 (82%), Gaps = 4/562 (0%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
LLS+AHN FSG++P+ELGNL EL VLS G+NNFSG LPPE+GNL+KL +LY+NS GAGGE
Sbjct: 156 LLSIAHNAFSGTIPKELGNLTELEVLSLGSNNFSGNLPPELGNLSKLRELYINSCGAGGE 215
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+A+L N+Q + SD+PFTGKIP+FIGN+T+L SLRFQGNSF+GPIPSS SKL SL
Sbjct: 216 IPSTFAELLNLQVMEGSDSPFTGKIPNFIGNFTRLTSLRFQGNSFEGPIPSSFSKLISLS 275
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SLRISD+YNVSSSLDF+ LKNLTDL+LRNALI+GSIPS GE Q LQ LDLSFNNLTG+
Sbjct: 276 SLRISDLYNVSSSLDFIRDLKNLTDLNLRNALISGSIPSFTGEFQKLQRLDLSFNNLTGE 335
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT--SNLQMN 239
+P +LFN +L LFLGNNSLSG+LP QKSE L+NIDLSYN LSG FPSWVT S LQ+N
Sbjct: 336 VPSSLFNSSALTDLFLGNNSLSGSLPAQKSEELKNIDLSYNQLSGSFPSWVTSASGLQLN 395
Query: 240 LVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNS 298
LVANNF F SN S F GL+CLQRNFPCNRN P YANFS+ CGG++MR AD VYE DNS
Sbjct: 396 LVANNFIFGSSNSSFFQGLNCLQRNFPCNRNTPLYANFSVNCGGQEMRIADGTVYEVDNS 455
Query: 299 SLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRY 358
SL A+SY VTNTEKW VSNVG F + NPAY+ N L QV T TPEL+QTSR+SPGSLRY
Sbjct: 456 SLGAASYYVTNTEKWAVSNVGLFSDSSNPAYLENNLKQVADTSTPELFQTSRVSPGSLRY 515
Query: 359 YGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN 418
YGLGLENG Y VSL FAET RSTE WESL RRVFDIYIQG+L+ KDFDISKEAGG +
Sbjct: 516 YGLGLENGNYTVSLEFAETKFASRSTETWESLGRRVFDIYIQGSLQLKDFDISKEAGGVD 575
Query: 419 RAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPST 478
+A+ K FNATVSEN+LEIHLFWAGKGTCC+P QG YGP+ISALSVVS F PSVSG+P
Sbjct: 576 KALEKKFNATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALSVVSDFTPSVSGIPSIP 635
Query: 479 AGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDN-DDEEVLVGIDSKPNTFSYAELR 537
KN+TGLIVG+ V +G + I I VFYM+ + N +++E L+GI +PNTF+YAELR
Sbjct: 636 PSKKNNTGLIVGVVVAVGSVSFILICAVFYMKMRASNINEDEELLGIGPRPNTFTYAELR 695
Query: 538 SATQDFDPSNKLGEGGYGPVYK 559
+AT+DF+P+NKLGEGG+GPVYK
Sbjct: 696 TATEDFNPTNKLGEGGFGPVYK 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571932|ref|XP_002526908.1| ATP binding protein, putative [Ricinus communis] gi|223533747|gb|EEF35480.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/559 (67%), Positives = 451/559 (80%), Gaps = 1/559 (0%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L+VAHN+ SG +P+E+GNLK+LT+LS G NNFSGTLPPE+GNL KLEQLY+NS G GEI
Sbjct: 152 LAVAHNMLSGPIPKEIGNLKDLTLLSLGVNNFSGTLPPELGNLVKLEQLYINSCGLNGEI 211
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P T+AKL ++ LWA D PFTG IPDFIG WT+L +LR QGNSF+GPIPSS S L S+ S
Sbjct: 212 PPTFAKLTRIRILWAFDNPFTGNIPDFIGTWTELTTLRLQGNSFKGPIPSSFSNLVSMKS 271
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LR+SD+ NVSS+LDF+ +LKNLTDL+LRNALIT +IP IGE QNL+ LDLSFNNL GQI
Sbjct: 272 LRLSDLRNVSSTLDFIKNLKNLTDLNLRNALITDTIPLDIGEFQNLEALDLSFNNLRGQI 331
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
P LF++ SL +LFLGNNSLSG LP +KS LQ IDLSYN+LSG FP+WV SNLQ+NLVA
Sbjct: 332 PNALFSLSSLEFLFLGNNSLSGALPNEKSGLLQTIDLSYNNLSGRFPAWVNSNLQLNLVA 391
Query: 243 NNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADNSSLSA 302
NNF FDRSN+SV PGL+CLQRNFPCNRN PRYANFSIKCGG +MRA I+YEA+NS++
Sbjct: 392 NNFVFDRSNMSVIPGLNCLQRNFPCNRNPPRYANFSIKCGGPEMRAAGILYEAENSTMGP 451
Query: 303 SSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYGLG 362
+S VT+T+KW VS G F +R+NP YV +T QVTGT +P+LY TSR SPGS+RYYGLG
Sbjct: 452 ASIHVTSTQKWAVSITGLFADRQNPVYVEHTQSQVTGTNSPDLYLTSRTSPGSIRYYGLG 511
Query: 363 LENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRAII 422
L+NGPY++SLLFAET +S++ WES RRVFDIYIQG L KDFDISKEAG A+
Sbjct: 512 LQNGPYDISLLFAETGFQHKSSQIWESNGRRVFDIYIQGRLELKDFDISKEAGAIEIAVT 571
Query: 423 KNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAGNK 482
K FN V+ENHLEIHLFWAG GTCC P QG+YGP ISA++VV AF+P+VSG+PP+T K
Sbjct: 572 KRFNINVTENHLEIHLFWAGMGTCCTPIQGNYGPIISAVNVVPAFRPTVSGIPPNTR-KK 630
Query: 483 NHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSATQD 542
+ T LIVGIAV G+L I I ++FY++ K DEEVL GI S+P TFSYAELR+AT+
Sbjct: 631 SSTELIVGIAVSAGVLTFILIFVMFYVKVKAGKLDEEVLSGISSRPITFSYAELRTATKG 690
Query: 543 FDPSNKLGEGGYGPVYKKT 561
F PSN+LGEGGYGPVYK T
Sbjct: 691 FCPSNQLGEGGYGPVYKGT 709
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484016|ref|XP_002272816.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/565 (64%), Positives = 438/565 (77%), Gaps = 16/565 (2%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LSV+HN SG++P+ELGNLKEL +LS G+NNFSGTLPPEIGNL KL+Q+Y++S G GEI
Sbjct: 145 LSVSHNALSGTIPKELGNLKELLMLSIGSNNFSGTLPPEIGNLVKLQQIYIDSSGVSGEI 204
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
PST+AKL++M ++A+D P TGKIPDFIGNWTKL+SLRFQGNS +GPIPSS SKL SL +
Sbjct: 205 PSTFAKLQDMVVMFATDVPITGKIPDFIGNWTKLESLRFQGNSLEGPIPSSFSKLTSLTT 264
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
LRISD+ NVSSSLDF+ +KNLTDL LRN+LI+GSIP IGE Q+L+TLDLSFNNLTG+I
Sbjct: 265 LRISDLSNVSSSLDFIKEMKNLTDLVLRNSLISGSIPFYIGEFQSLKTLDLSFNNLTGEI 324
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
P LFN+ SL LFLG N LSGT P QKSE LQ IDLSYN LSG FPSW+ S LQ+NLVA
Sbjct: 325 PDALFNLSSLTSLFLGTNRLSGTFPAQKSEQLQTIDLSYNELSGSFPSWLKSGLQLNLVA 384
Query: 243 NNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRA-DNIVYEADNS--- 298
NN TFD +N S+F GL CLQRNFPCNR+ P Y N SIKCGG + R D VYEADNS
Sbjct: 385 NNLTFDSTNRSIFEGLECLQRNFPCNRDPPPYTNVSIKCGGPEWRTPDGTVYEADNSITT 444
Query: 299 SLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRY 358
+++SY V+ E WGVSNVG + +R + +V+GT PEL++TSRISPGSLRY
Sbjct: 445 GTASTSYYVSRLENWGVSNVGLYSDR------IAYKTEVSGTNHPELFKTSRISPGSLRY 498
Query: 359 YGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN 418
YGLGL+NG Y VSL FAE + D+S + WES+ RRVFDIYIQGTL+ KDFDI+KEAGG
Sbjct: 499 YGLGLQNGHYTVSLQFAEMELKDQSAQTWESIGRRVFDIYIQGTLQLKDFDITKEAGGVE 558
Query: 419 RAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPST 478
RAI + FNA VS+N+LEIHLFWAGKGTCC+P +G YGP+ISALSVVS K +P +T
Sbjct: 559 RAIERKFNAVVSQNYLEIHLFWAGKGTCCIPFEGYYGPSISALSVVSDLK----RVPTTT 614
Query: 479 AGNKNHTGLIVGIAVPLGILGLI-AISIVFYMRRKKDNDDEE-VLVGIDSKPNTFSYAEL 536
K +TGLI GI +GIL I I VFY++ K N +++ VL+G+ +PNTF YAEL
Sbjct: 615 PPKKGYTGLIAGIVAAIGILSFILIICAVFYVKWKASNLNKDIVLLGVGPRPNTFRYAEL 674
Query: 537 RSATQDFDPSNKLGEGGYGPVYKKT 561
R+AT++F +NKLGEGG+G VYK T
Sbjct: 675 RTATENFSATNKLGEGGFGSVYKGT 699
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484024|ref|XP_003633055.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] gi|296089265|emb|CBI39037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/566 (62%), Positives = 439/566 (77%), Gaps = 16/566 (2%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ V HN SG++P+ELGNLKEL +L+ G+NNFSGTLPPE+GNL KLE ++++S G GGE
Sbjct: 137 FIDVGHNALSGTIPKELGNLKELQMLAIGSNNFSGTLPPELGNLPKLELIFIDSSGVGGE 196
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+ KL+NM+ ++ SD P TGKIPDFIGNWTKLK LR QGNSF+GPIPS+ S+L S++
Sbjct: 197 IPSTFVKLKNMREMFLSDTPLTGKIPDFIGNWTKLKRLRIQGNSFEGPIPSTFSQLISME 256
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SLRISD+ NVSSSLDF+ +KNLTDL LRNAL++G IPS I E ++L+TLDLSFNNLTG
Sbjct: 257 SLRISDLANVSSSLDFIKDMKNLTDLVLRNALLSGGIPSDIEEYRSLETLDLSFNNLTGG 316
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
IP LFN+ +L LFLGNNS G+LP +KS+ LQ IDLSYN +SG FP+W+ LQ+NLV
Sbjct: 317 IPNALFNMNNLTALFLGNNSFYGSLPDKKSDKLQTIDLSYNEISGGFPTWIDPTLQLNLV 376
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRA-DNIVYEADNSSL 300
ANNF FD +N S+F GL+CLQRNFPC N PRY N SIKCGG+++ D +VYE+DNS L
Sbjct: 377 ANNFVFDNTNNSIFEGLNCLQRNFPC--NTPRYTNVSIKCGGQEVTTPDGMVYESDNSIL 434
Query: 301 --SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRY 358
+++SY V+ +EKW VSNVG + +R + NT V GT TPEL++TSRISPGSLRY
Sbjct: 435 GTASTSYYVSRSEKWAVSNVGLYVDR-----IANTSSLVNGTDTPELFKTSRISPGSLRY 489
Query: 359 YGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN 418
YGLGL+NGPY VSL FAE + D ST WES RRVFDIYIQG L+ KDFDISKEAGG
Sbjct: 490 YGLGLKNGPYVVSLQFAEMLLKDPSTRTWESTGRRVFDIYIQGALKEKDFDISKEAGGVQ 549
Query: 419 RAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPST 478
RAI+K FN TVS+N+LEIHL WAGKGTCC+P +G YGP+ISALSVVSA + +PP
Sbjct: 550 RAIVKKFNTTVSKNYLEIHLLWAGKGTCCIPFEGYYGPSISALSVVSALER----MPPPP 605
Query: 479 AGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEV-LVGIDSKPNTFSYAELR 537
+ N TGLI GIAV GIL I + VFY++R+ N +EE+ L+ I NTFSYAELR
Sbjct: 606 SETSN-TGLIAGIAVTAGILCFILVCAVFYIKRRGSNSNEEIELLEIGPISNTFSYAELR 664
Query: 538 SATQDFDPSNKLGEGGYGPVYKKTQL 563
+AT++F+P+NKLGEGG+G V+K T L
Sbjct: 665 TATENFNPTNKLGEGGFGAVFKGTLL 690
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495319|ref|XP_002271226.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/569 (63%), Positives = 442/569 (77%), Gaps = 15/569 (2%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
S+AHN FSG++P++LG LKEL +L+ G+NNFSG LPPE+GNLAKL+++Y+NS GAGGE
Sbjct: 124 FFSIAHNAFSGTIPKDLGKLKELKILALGSNNFSGALPPELGNLAKLQEIYINSCGAGGE 183
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPST+A L N++T+WASD FTGKIP+FIGNWTKL SLR +GNSF+GPIPSSLS LASL
Sbjct: 184 IPSTFANLYNLETVWASDCQFTGKIPNFIGNWTKLWSLRLEGNSFKGPIPSSLSSLASLQ 243
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
+L ISDIY VSSSLDF+ LKNLT L LRN LI+GSIPS IGE Q+LQTLDLSFNNL G
Sbjct: 244 TLHISDIYEVSSSLDFIKGLKNLTSLVLRNTLISGSIPSYIGEYQSLQTLDLSFNNLIGG 303
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 241
IP +LF + +L LFLGNN L+GTLP QKSE LQ IDLSYN +SG FPSW+ S+LQ+NLV
Sbjct: 304 IPSSLFKLNNLTALFLGNNRLTGTLPPQKSEKLQIIDLSYNEISGSFPSWLNSDLQLNLV 363
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMR-ADNIVYEADNS-- 298
ANNFTFD SN S+ GL+CLQR+FPCN+ P+Y NFS+KCGG ++R +D V+EADNS
Sbjct: 364 ANNFTFDSSNSSILEGLNCLQRDFPCNKGTPQYTNFSVKCGGPELRTSDGTVFEADNSIT 423
Query: 299 -SLSASSYAVTNTEKWGVSNVGFFYERE--NPAYVLNTLGQVTGTRTPELYQTSRISPGS 355
+++ Y V+ E+W VSNVG + +R N + V L QV GT+ P+L++TSRISPGS
Sbjct: 424 IGTTSALYFVSRMERWAVSNVGLYNDRSEYNTSSVEKALSQVKGTKNPKLFETSRISPGS 483
Query: 356 LRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAG 415
LRYYGLGL NGPY VSLLFAET D ST+ W+S RRVFDIYIQG L +KDFDIS+EAG
Sbjct: 484 LRYYGLGLVNGPYTVSLLFAETTFKDPSTQTWQSRGRRVFDIYIQGMLEYKDFDISREAG 543
Query: 416 GPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLP 475
G +A+ K F ATVSEN+LEIHLFWAGKGTCC+P QG YGP+ISAL+VV P ++ +P
Sbjct: 544 GVEKALEKKFKATVSENYLEIHLFWAGKGTCCIPVQGYYGPSISALTVV----PDLTRIP 599
Query: 476 PSTAGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEV-LVGIDSKPNTFSYA 534
P K+ TGLI+G A GI+ + + YM+RK + +E++ L+ I K NTFS A
Sbjct: 600 P----KKHKTGLIIGFAAAAGIVSFMLVLAACYMKRKGLHANEDIELLEIGPKLNTFSDA 655
Query: 535 ELRSATQDFDPSNKLGEGGYGPVYKKTQL 563
ELR+AT+DF P+NKLG+GG+G VYK T L
Sbjct: 656 ELRTATEDFSPANKLGQGGFGTVYKGTLL 684
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 755 | ||||||
| TAIR|locus:2205250 | 1032 | AT1G56130 [Arabidopsis thalian | 0.727 | 0.531 | 0.504 | 1.2e-199 | |
| TAIR|locus:2205260 | 1047 | AT1G56120 [Arabidopsis thalian | 0.699 | 0.504 | 0.385 | 1.6e-134 | |
| TAIR|locus:2203718 | 1035 | AT1G53440 [Arabidopsis thalian | 0.719 | 0.524 | 0.367 | 6.1e-131 | |
| TAIR|locus:2019367 | 1078 | AT1G29740 [Arabidopsis thalian | 0.699 | 0.489 | 0.386 | 3.3e-115 | |
| TAIR|locus:2019317 | 969 | AT1G29730 [Arabidopsis thalian | 0.590 | 0.460 | 0.381 | 3.1e-112 | |
| TAIR|locus:2203847 | 1021 | RKF1 "receptor-like kinase in | 0.708 | 0.523 | 0.367 | 3.6e-103 | |
| TAIR|locus:2009630 | 953 | AT1G53420 [Arabidopsis thalian | 0.715 | 0.566 | 0.335 | 9.8e-97 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.321 | 0.216 | 0.348 | 2.5e-43 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.321 | 0.240 | 0.353 | 4.3e-42 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.316 | 0.216 | 0.341 | 1.7e-41 |
| TAIR|locus:2205250 AT1G56130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1458 (518.3 bits), Expect = 1.2e-199, Sum P(2) = 1.2e-199
Identities = 281/557 (50%), Positives = 382/557 (68%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
N SG VP+E+G L +L +L +NNFSG++P EIG KL+Q+Y++S G G IP ++A
Sbjct: 157 NALSGPVPKEIGLLTDLRLLGISSNNFSGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSFA 216
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISD 127
L ++ W +D T +IPDFIG+WTKL +LR G GPIP R+ D
Sbjct: 217 NLVQLEQAWIADLEVTDQIPDFIGDWTKLTTLRIIGTGLSGPIPSSFSNLTSLTELRLGD 276
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
I + SSSLDF+ +K+L+ L LRN +TG+IPS IGE +L+ +DLSFN L G IP +LF
Sbjct: 277 ISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIPASLF 336
Query: 188 NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-SNLQMNLVANNFT 246
N+ L +LFLGNN+L+G+ PTQK+++L+N+D+SYN LSG PSWV+ +L++NLVANNFT
Sbjct: 337 NLSQLTHLFLGNNTLNGSFPTQKTQSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVANNFT 396
Query: 247 FDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRA-DNIVYEADNSSLSASSY 305
+ + V PGL+CLQ+NFPCNR Y++FSI CGG + R+ ++E ++ +S+
Sbjct: 397 LEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVTGALFEREDEDFGPASF 456
Query: 306 AVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYGLGLEN 365
V+ ++W S+VG F N Y+ + Q T EL+Q++R+S S+RYYGLGLEN
Sbjct: 457 FVSAGQRWAASSVGLFAGSSNNIYIATSQSQFVNTLDSELFQSARLSASSVRYYGLGLEN 516
Query: 366 GPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPN-RAIIKN 424
G Y V+L FAE IL ++ W+ L RR FDIY+QG L KDFD+ + AG RA+ +
Sbjct: 517 GGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQRV 576
Query: 425 FNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTAGNKNH 484
+ A VSENHLE+HLFWAGKGTCC+P QG YGP ISA+S F P+V+ PPS KN
Sbjct: 577 YKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSKG--KNR 634
Query: 485 TGLIVGIAVPLGILGLIAISIVFYMR--RKKDNDDEEVLVGIDSKPNTFSYAELRSATQD 542
TG IVG+ V +G+L ++A ++F +R RK+ DDEE+L G+D KP F+Y+EL+SATQD
Sbjct: 635 TGTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELL-GMDVKPYIFTYSELKSATQD 693
Query: 543 FDPSNKLGEGGYGPVYK 559
FDPSNKLGEGG+GPVYK
Sbjct: 694 FDPSNKLGEGGFGPVYK 710
|
|
| TAIR|locus:2205260 AT1G56120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 1.6e-134, Sum P(2) = 1.6e-134
Identities = 218/565 (38%), Positives = 311/565 (55%)
Query: 11 SGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLR 70
SG +P N EL V + +G +P IG KL L + G G IPS+++ L
Sbjct: 183 SGGIPLSFANFVELEVAWIMDVELTGRIPDFIGFWTKLTTLRILGTGLSGPIPSSFSNLI 242
Query: 71 NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRIS--DI 128
+ L D DFI + L L + N+ G IP +S +
Sbjct: 243 ALTELRLGDISNGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGGYTSLQQVDLSFNKL 302
Query: 129 YN-VSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
+ + +SL +L LT L L N + GS+P+ G Q+L LD+S+N+L+G +P +
Sbjct: 303 HGPIPASL---FNLSRLTHLFLGNNTLNGSLPTLKG--QSLSNLDVSYNDLSGSLPSWV- 356
Query: 188 NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH-LSGPFPSWVTSNL-QMNL-VANN 244
++ L + NN TL E L N LS H L FP + + N + +
Sbjct: 357 SLPDLKLNLVANNF---TL-----EGLDNRVLSGLHCLQKNFPCNRGEGICKCNKKIPSQ 408
Query: 245 FTFDRSNISVF-PGLHCL-QRNFPCNRN-APRYA---NFSIKCGGKQMRA-DNIVYEADN 297
F N+ + G + L ++N C + A + NFSI CGG ++R+ ++E ++
Sbjct: 409 IMFSMLNVQTYGQGSNVLLEKN--CFKTFAIDWCLDYNFSINCGGPEIRSVSGALFEKED 466
Query: 298 SSLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLR 357
+ L +S+ V+ ++W S+VG F N Y+ +L Q T EL+Q++R+S SLR
Sbjct: 467 ADLGPASFVVSAAKRWAASSVGNFAGSSNNIYIATSLAQFINTMDSELFQSARLSASSLR 526
Query: 358 YYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGP 417
YYGLGLENG Y V+L FAE I + W+ + RR F+IY+QG L KDFDI + AGG
Sbjct: 527 YYGLGLENGGYTVTLQFAEVQI--EGSNSWKGIGRRRFNIYVQGRLVEKDFDIRRTAGGS 584
Query: 418 N-RAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPP 476
+ RA+ + + VSENHLE+HLFWAGKGTCC+P QG YGP I+A+S F P+V+ PP
Sbjct: 585 SVRAVQREYKTNVSENHLEVHLFWAGKGTCCIPIQGAYGPLIAAVSATPDFTPTVANRPP 644
Query: 477 STAGNKNHTGLIVGIAVPLGILGLIA--ISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYA 534
S K+ TG IVG+ V +G+L + A + +V RRK DDEE+L +D KP TF+Y+
Sbjct: 645 SKG--KSRTGTIVGVIVGVGLLSIFAGVVILVIRKRRKPYTDDEEIL-SMDVKPYTFTYS 701
Query: 535 ELRSATQDFDPSNKLGEGGYGPVYK 559
EL++ATQDFD SNKLGEGG+G VYK
Sbjct: 702 ELKNATQDFDLSNKLGEGGFGAVYK 726
|
|
| TAIR|locus:2203718 AT1G53440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 206/560 (36%), Positives = 326/560 (58%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+L+V N SG P +LG + LT + +N F+G LPP +GNL L++L ++S G
Sbjct: 139 ILAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGR 198
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXX 121
IP + + L+N+ +GKIPDFIGNWT+L L QG S +GPIP
Sbjct: 199 IPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLT 258
Query: 122 XXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG-ELQNLQTLDLSFNNLTG 180
RI+D+ +S + ++ N+ L LRN LI IP IG + L+ LDLS N L G
Sbjct: 259 ELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNG 318
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
IP T ++ + N+++L NNSL+G +P ++ QNIDLSYN+ + P P+ + L +NL
Sbjct: 319 TIPDTFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIDLSYNNFTQP-PTLSCNQLDVNL 377
Query: 241 VANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADNSSL 300
+++ + +++ CL+++ PC +A +++ I CGG +++ D Y D +
Sbjct: 378 ISSYPSVTNNSVQ-----WCLRKDLPCPGDA-HHSSLFINCGGNRLKVDKDEYADDLNKR 431
Query: 301 SASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGSLRYYG 360
AS+++ + E+WG S+ G + + Y+ + TPE Y+T+R++ SL+YYG
Sbjct: 432 GASTFSSVS-ERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYG 490
Query: 361 LGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420
L + G Y V L FAE I+ + + + SL RR+FDIY+QG L +DF+I++ AGG +
Sbjct: 491 LCMRRGSYKVQLYFAE--IMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKP 548
Query: 421 IIKNFNAT-VSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLPPSTA 479
++ + V+ + LEIHL W GKGT +P +G YGP ISA++V FK +G P S
Sbjct: 549 FLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVD-TGKPLS-- 605
Query: 480 GNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSYAELRSA 539
N G+++ V G+L L+ + + Y+ K+ +++EE L G+D + +F+ +++ A
Sbjct: 606 -NGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEE-LRGLDLQTGSFTLKQIKRA 663
Query: 540 TQDFDPSNKLGEGGYGPVYK 559
T +FDP NK+GEGG+GPVYK
Sbjct: 664 TNNFDPENKIGEGGFGPVYK 683
|
|
| TAIR|locus:2019367 AT1G29740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 221/572 (38%), Positives = 303/572 (52%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+SV N +G +P+ LG LT L N FSGT+P E+GNL LE L +S G +
Sbjct: 151 ISVCANRLTGDIPKGLGKFINLTQLGLEANQFSGTIPKELGNLVNLEGLAFSSNQLVGGV 210
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
P T A+L+ + L SD G IP+FIGN +KL+ L + + PIP
Sbjct: 211 PKTLARLKKLTNLRFSDNRLNGSIPEFIGNLSKLQRLELYASGLKDPIPYSIFRLENLID 270
Query: 123 XRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
RISD + + S K+L L LRN +TG IP+ + +L NL TLDLSFN LTG++
Sbjct: 271 LRISDTAAGLGQVPLITS-KSLKFLVLRNMNLTGPIPTSLWDLPNLMTLDLSFNRLTGEV 329
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQ-NIDLSYNHLSGPFPSWVTSNLQMNLV 241
P + + Y +L N LSG + + NIDLSYN+ + W S + N +
Sbjct: 330 PA---DASAPKYTYLAGNMLSGKVESGPFLTASTNIDLSYNNFT-----WSQSCKERNNI 381
Query: 242 ANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADN----IVYEADN 297
N + RS S+ L C N N N + N CGG + +N +YE DN
Sbjct: 382 -NTYASSRSTNSLTRLLPCSAINLCQNYNRSLHIN----CGGPDVTIENSRGRFLYEGDN 436
Query: 298 SSL--SASSYAVTNTEKWGVSNVGFFYERE--NPAYVLNTLGQVTGTRTPELYQTSRISP 353
L SA++Y N WG SN G F + Y +++ V+ + P+LYQ +R SP
Sbjct: 437 YGLTGSATNYYGKN---WGFSNTGDFMDDAITEDTYTVSSESAVSA-KYPDLYQNARRSP 492
Query: 354 GSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKE 413
SL Y+ + ENG YNV L FAE D E + LA+RVF+IY+QG L W+DF I +E
Sbjct: 493 LSLAYFAICFENGSYNVKLHFAEIQFSDE--EPFSRLAKRVFNIYVQGKLIWEDFSIREE 550
Query: 414 AGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSG 473
A G ++ +IK N TV++N LEI L+WAGKGT +PK+G+YG ISA+SV + + S G
Sbjct: 551 ANGTHKEVIKEVNTTVTDNTLEIRLYWAGKGTTIIPKRGNYGSLISAISVCPSSE-SECG 609
Query: 474 LP----PSTAGNKNHTG--LIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSK 527
+P P T LI+GIA + L + + + Y R N D E K
Sbjct: 610 VPVQIHPVTKQQHKQRKYHLILGIAALIVSLSFLILGAL-YWRICVSNADGE-------K 661
Query: 528 PNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
+FS +L+ AT DF+P NK+GEGG+G VYK
Sbjct: 662 RGSFSLRQLKVATDDFNPLNKIGEGGFGSVYK 693
|
|
| TAIR|locus:2019317 AT1G29730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 3.1e-112, Sum P(3) = 3.1e-112
Identities = 186/487 (38%), Positives = 255/487 (52%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+SV N SG +P+ LG LT+L N FSGT+P E+GNL L+ L L+S G +
Sbjct: 151 ISVCANRLSGDIPKGLGKFINLTLLVLEANQFSGTIPKELGNLVNLQGLGLSSNQLVGGL 210
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
P T AKL + L SD G IP+FIG KL+ L + +GPIP
Sbjct: 211 PKTLAKLTKLTNLHLSDNRLNGSIPEFIGKLPKLQRLELYASGLRGPIPDSIFHLENLID 270
Query: 123 XRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
RISD + + S +L L LRN ++G IP+ I +L +L TLDLSFN LTG+I
Sbjct: 271 VRISDTVAGLGHVPQITST-SLKYLVLRNINLSGPIPTSIWDLPSLMTLDLSFNRLTGEI 329
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQ-NIDLSYNHLSGPFPSWVTSNLQMNLV 241
P + Y +L N LSG + T NIDLSYN+ + W
Sbjct: 330 PAYAT---APKYTYLAGNMLSGKVETGAFLTASTNIDLSYNNFT-----W---------- 371
Query: 242 ANNFTFDRSNISVFPGLHC---LQRNFPCN--RNAPRYA-NFSIKCGGKQMRADN----I 291
+ +R NI+ + H L R PC+ + Y+ + I CGG + +N
Sbjct: 372 -SPMCKERKNINTYESSHSKNRLTRLLPCSAIKQCQNYSRSLHINCGGPDVTIENSRGRF 430
Query: 292 VYEADNSSLSASSYAVTN--TEKWGVSNVGFFYERE--NPAYVLNTLGQVTGTRTPELYQ 347
+YE DN L+ S+ TN + WG SN G F + Y +++ V+ + P+LYQ
Sbjct: 431 LYEGDNYGLTGSA---TNYYRKNWGYSNTGDFMDDAITEDTYTVSSESAVSA-KYPDLYQ 486
Query: 348 TSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKD 407
+R SP SL YY ENG YNV L FAE D E + LA+RVF+IYIQG L W+D
Sbjct: 487 NARRSPLSLAYYAFCFENGSYNVKLHFAEIQFSD--VEPYTKLAKRVFNIYIQGKLIWED 544
Query: 408 FDISKEAGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAF 467
F I +EA G ++ +I+ N TV++N LEI L+WAGKGT +P++G YG ISA+SV +
Sbjct: 545 FSIREEANGTHKEVIREVNTTVTDNTLEIRLYWAGKGTMIIPQRGYYGSLISAVSVCPSS 604
Query: 468 KPSVSGL 474
+ G+
Sbjct: 605 ESECGGM 611
|
|
| TAIR|locus:2203847 RKF1 "receptor-like kinase in flowers 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 209/569 (36%), Positives = 299/569 (52%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+S+ N SG +P+E GN LT L +N FSGT+P E+GNL L++L L+S G +
Sbjct: 151 ISLLVNRLSGEIPKEFGN-SSLTYLDLESNAFSGTIPQELGNLVHLKKLLLSSNKLTGTL 209
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
P++ A+L+NM +D +G IP +I NW +L+ L + GPIP
Sbjct: 210 PASLARLQNMTDFRINDLQLSGTIPSYIQNWKQLERLEMIASGLTGPIPSVISVLSNLVN 269
Query: 123 XRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
RISDI + ++ LT + L+N I+G IP+ + L+ L+TLDLSFN L G I
Sbjct: 270 LRISDIRGPVQPFPSLKNVTGLTKIILKNCNISGQIPTYLSHLKELETLDLSFNKLVGGI 329
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
P + +L ++ L N L G P + + +DLSYN+L P MNL
Sbjct: 330 P-SFAQAENLRFIILAGNMLEGDAPDELLRDGITVDLSYNNLKWQSPESRACRPNMNLNL 388
Query: 243 NNF-TFDRSNISVFPGLHCLQRNFPCNRNAPRYAN-FSIKCGGKQM----RADNIVYEAD 296
N F + S F L C+ ++F C PRY++ + CGG M + +YE D
Sbjct: 389 NLFQSTSTKKSSKF--LPCI-KDFKC----PRYSSCLHVNCGGSDMYVKEKKTKELYEGD 441
Query: 297 -NSSLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLGQVTGTRTPELYQTSRISPGS 355
N A+ Y + WG S+ G F + N T+ V + +LY+++RI+P S
Sbjct: 442 GNVEGGAAKYFLKPDANWGFSSTGDFMDDNNFQNTRFTMF-VPASNQSDLYKSARIAPVS 500
Query: 356 LRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAG 415
L Y+ LENG Y ++L FAE + E + L RR+FDIYIQ L KDF+I EA
Sbjct: 501 LTYFHACLENGNYTINLDFAEIRFTN--DENYNRLGRRLFDIYIQEKLVAKDFNIMDEAK 558
Query: 416 GPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSVSGLP 475
G IIK A V+ + L I L WAGKGT +P +G YGP ISA+S+VS KP
Sbjct: 559 GAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKPCER--- 615
Query: 476 PSTAGNKNHTGLIVGIAVP---LGILGLIAIS--IVFYMRRKKDNDDEEVLVGIDSKPNT 530
P T G + +GI P + ILG + I + R++KD +EE+ G T
Sbjct: 616 PKT-GMSPGAYIAIGIGAPCLIIFILGFLWICGCLPRCGRQRKDPYEEELPSG------T 668
Query: 531 FSYAELRSATQDFDPSNKLGEGGYGPVYK 559
F+ +++ AT DF+P+NK+GEGG+G V+K
Sbjct: 669 FTLRQIKFATDDFNPTNKIGEGGFGAVFK 697
|
|
| TAIR|locus:2009630 AT1G53420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 9.8e-97, Sum P(2) = 9.8e-97
Identities = 190/566 (33%), Positives = 278/566 (49%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ ++ N +GS+P E G L + + GN +G +P E GN+ L L L + GE+
Sbjct: 92 IDLSRNYLNGSIPPEWGVLPLVNIWLLGNR-LTGPIPKEFGNITTLTSLVLEANQLSGEL 150
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
P L N+Q + S F G+IP T L+ R N G IP
Sbjct: 151 PLELGNLPNIQQMILSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLER 210
Query: 123 XRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
I V + SL L DL + + S + ++ ++TL L NLTG +
Sbjct: 211 LFIQASGLVGPIPIAIASLVELKDLRISDLNGPESPFPQLRNIKKMETLILRNCNLTGDL 270
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY---NHLSGPFPSW-VTSNLQM 238
P L I S +L L N LSG +P NL++ Y N L+G P W V ++
Sbjct: 271 PDYLGKITSFKFLDLSFNKLSGAIPNTYI-NLRDGGYIYFTGNMLNGSVPDWMVNKGYKI 329
Query: 239 NLVANNFTFDRSN-ISVFPGLHCLQRNFPCNRNAPRYAN-FSIKCGGKQMRADNIVYEAD 296
+L NNF+ D +N + + + RN+ C P+ N I CGG +M + +YE+D
Sbjct: 330 DLSYNNFSVDPTNAVCKYNNVLSCMRNYQC----PKTFNALHINCGGDEMSINGTIYESD 385
Query: 297 NSSLSASSYAVTNTEKWGVSNVGFFYEREN-PAYV-LNTLGQVTGTRTPELYQTSRISPG 354
S Y N W +NVG F + ++ P V + + LY +RIS
Sbjct: 386 KYDRLESWYESRNG--WFSNNVGVFVDDKHVPERVTIESNSSELNVVDFGLYTQARISAI 443
Query: 355 SLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEA 414
SL YY L LENG YNV+L FAE I+ ++SL RR FDIYIQ L KDF+I+KEA
Sbjct: 444 SLTYYALCLENGNYNVNLHFAE--IMFNGNNNYQSLGRRFFDIYIQRKLEVKDFNIAKEA 501
Query: 415 GGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAISALSVVSAFKPSV-SG 473
+IK F + + LEI L+WAG+GT +PK+ YGP ISA+SV S+ PS +G
Sbjct: 502 KDVGNVVIKTFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPLISAISVDSSVNPSPRNG 561
Query: 474 LPPSTAGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKKDNDDEEVLVGIDSKPNTFSY 533
+ T HT L+V +++ + L + Y+R K + + ++ +FS
Sbjct: 562 MSTGTL----HT-LVVILSIFIVFLVFGTLWKKGYLRSKSQMEKD--FKSLELMIASFSL 614
Query: 534 AELRSATQDFDPSNKLGEGGYGPVYK 559
+++ AT +FD +N++GEGG+GPVYK
Sbjct: 615 RQIKIATNNFDSANRIGEGGFGPVYK 640
|
|
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 87/250 (34%), Positives = 128/250 (51%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L+++ N +GS+P LGNLK L VL N +G +PPE+GN+ + L L+ G I
Sbjct: 179 LALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSI 238
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
PST L+N+ L+ + TG IP IGN + +L N G IP
Sbjct: 239 PSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTL 298
Query: 123 XRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
+ Y + +++++ DL L N +TGSIPS +G L+NL L L N LTG I
Sbjct: 299 LSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVI 358
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY---NHLSGPFPSWV---TSNL 236
P L N+ S+ L L NN L+G++P+ NL+N+ Y N+L+G P + S +
Sbjct: 359 PPELGNMESMIDLQLNNNKLTGSIPSSFG-NLKNLTYLYLYLNYLTGVIPQELGNMESMI 417
Query: 237 QMNLVANNFT 246
++L N T
Sbjct: 418 NLDLSQNKLT 427
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 4.3e-42, Sum P(3) = 4.3e-42
Identities = 89/252 (35%), Positives = 136/252 (53%)
Query: 2 LLSVAHNVFSGSVPRELGNLK-ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
LLSV + G++P + N+ EL L+ N+F G++P +IGNL L++L L G
Sbjct: 341 LLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTG 400
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXX 120
+P++ KL + L +G+IP FIGN T+L+ L NSF+G +P
Sbjct: 401 PLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPPSLGKCSHM 460
Query: 121 XXXRISDIYN-VSSSLDF-VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
RI YN ++ ++ +M + L +LS+ ++GS+P+ IG LQNL L L N
Sbjct: 461 LDLRIG--YNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPNDIGSLQNLVKLSLENNKF 518
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS-ENLQNIDLSYNHLSGPFPSWVT--SN 235
+G +P+TL N ++ LFL NS G +P + ++ +DLS N LSG P + S
Sbjct: 519 SGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRGLMGVRRVDLSNNDLSGSIPEYFANFSK 578
Query: 236 LQ-MNLVANNFT 246
L+ +NL NNFT
Sbjct: 579 LEYLNLSINNFT 590
|
|
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 84/246 (34%), Positives = 126/246 (51%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L +A N G P L +T + G N F G++P E+GN + L++L L G GE+
Sbjct: 462 LRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGEL 521
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXX 122
P L + TL S TG++P I N L+ L N+F G +P
Sbjct: 522 PREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLEL 581
Query: 123 XRISDIYNVSSSLDFVM-SLKNLTDLSLRNALITGSIPSGIGELQNLQ-TLDLSFNNLTG 180
++S+ N+S ++ + +L LT+L + L GSIP +G L LQ L+LS+N LTG
Sbjct: 582 LKLSN-NNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTG 640
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFPSWVTSNLQM 238
+IP L N+ L +L L NN+LSG +P+ + +L + SYN L+GP P + N+ M
Sbjct: 641 EIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP--LLRNISM 698
Query: 239 NLVANN 244
+ N
Sbjct: 699 SSFIGN 704
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 755 | |||
| pfam11721 | 164 | pfam11721, Malectin, Di-glucose binding within end | 7e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-33 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-28 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-26 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-25 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-22 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-19 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-14 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-06 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-05 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 9e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.004 | |
| pfam08693 | 40 | pfam08693, SKG6, Transmembrane alpha-helix domain | 0.004 |
| >gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 7e-52
Identities = 78/190 (41%), Positives = 98/190 (51%), Gaps = 31/190 (16%)
Query: 276 NFSIKCGGKQMR-ADNIVYEADN-SSLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNT 333
+I CGG + +D I YEAD + ++ Y V++T N
Sbjct: 2 VLAINCGGPEHTDSDGITYEADTYFTGGSADYYVSDT---------------------NG 40
Query: 334 LGQVTGTRTPELYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARR 393
+ GT PELYQT R SP S YY LENG Y V L FAE + L RR
Sbjct: 41 SSSIAGTTDPELYQTERYSPSSFSYYIPCLENGNYTVILHFAEIYFGED------GLGRR 94
Query: 394 VFDIYIQGTLRWKDFDISKEAGGPNRAIIKNF-NATVSENHLEIHLFWAGKGTCCVPKQG 452
VFD+Y+QG L KDFDI EAGG + K + TV++ LEIH +WAGKGT +P +G
Sbjct: 95 VFDVYVQGKLVLKDFDIVAEAGGKGKTAHKEYIPVTVTDGTLEIHFYWAGKGTLLIPFRG 154
Query: 453 DYG-PAISAL 461
YG P ISA+
Sbjct: 155 VYGNPKISAI 164
|
Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. Length = 164 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 4e-35
Identities = 91/251 (36%), Positives = 124/251 (49%), Gaps = 7/251 (2%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L++A N G +PRELG +K L + G NN SG +P EIG L L L L G
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IPS+ L+N+Q L+ +G IP I + KL SL NS G IP + +L +L+
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
L + + SL L L L + +G IP +G+ NL LDLS NNLTG+
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPSWVTSNLQ-- 237
IP L + G+L L L +NSL G +P +L+ + L N SG PS T L
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLV 430
Query: 238 --MNLVANNFT 246
+++ NN
Sbjct: 431 YFLDISNNNLQ 441
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 7e-33
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 2/229 (0%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L +++N+ SG +P ++G+ L VL G N G +P + NL LE L L S G+I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P ++++++ ++ +G+IP IG T L L N+ GPIPSSL L +L
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L + + SL+ L L L + ++G IP + +LQNL+ L L NN TG+I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP 229
P L ++ L L L +N SG +P K NL +DLS N+L+G P
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-28
Identities = 88/242 (36%), Positives = 132/242 (54%), Gaps = 8/242 (3%)
Query: 11 SGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLA-KLEQLYLNSWGAGGEIPSTYAKL 69
SG + + L + ++ NN SG +P +I + L L L++ G IP +
Sbjct: 82 SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139
Query: 70 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129
N++TL S+ +G+IP+ IG+++ LK L GN G IP+SL+ L SL+ L ++
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199
Query: 130 NVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNI 189
V + +K+L + L ++G IP IG L +L LDL +NNLTG IP +L N+
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259
Query: 190 GSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTS--NLQ-MNLVANN 244
+L YLFL N LSG +P + L ++DLS N LSG P V NL+ ++L +NN
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319
Query: 245 FT 246
FT
Sbjct: 320 FT 321
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 84/252 (33%), Positives = 122/252 (48%), Gaps = 12/252 (4%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+L + N FSG +P+ LG LTVL NN +G +P + + L +L L S GE
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF---QGNSFQGPIPSSLSKLA 118
IP + R+++ + D F+G++P +TKL + F N+ QG I S +
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPS---EFTKLPLVYFLDISNNNLQGRINSRKWDMP 452
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
SL L ++ L K L +L L +G++P +G L L L LS N L
Sbjct: 453 SLQMLSLA-RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSEN--LQNIDLSYNHLSGPFPS---WVT 233
+G+IP L + L L L +N LSG +P SE L +DLS N LSG P V
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571
Query: 234 SNLQMNLVANNF 245
S +Q+N+ N+
Sbjct: 572 SLVQVNISHNHL 583
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-25
Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 28/248 (11%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N SG +P + L+ L +L +NNF+G +P + +L +L+ L L S GEI
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P K N+ L S TG+IP+ + + L L NS +G IP SL SL
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
+R+ D N+ +G +PS +L + LD+S NNL G+I
Sbjct: 409 VRLQD-----------------------NSF-SGELPSEFTKLPLVYFLDISNNNLQGRI 444
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLP-TQKSENLQNIDLSYNHLSGPFPSWVTSN---LQM 238
+++ SL L L N G LP + S+ L+N+DLS N SG P + S +Q+
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 239 NLVANNFT 246
L N +
Sbjct: 505 KLSENKLS 512
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 1/201 (0%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
N G +P+ LG + L + +N+FSG LP E L + L +++ G I S
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD 127
+ ++Q L + F G +PD G+ +L++L N F G +P L L+ L L++S+
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
D + S K L L L + ++G IP+ E+ L LDLS N L+G+IP+ L
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568
Query: 188 NIGSLNYLFLGNNSLSGTLPT 208
N+ SL + + +N L G+LP+
Sbjct: 569 NVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-19
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 36/211 (17%)
Query: 44 NLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF-- 101
N +++ + L+ G+I S +L +QT+ S+ +G IPD I +T SLR+
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI--FTTSSSLRYLN 124
Query: 102 -QGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160
N+F G IP S+ NL L L N +++G IP+
Sbjct: 125 LSNNNFTGSIPRG--------------------------SIPNLETLDLSNNMLSGEIPN 158
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNID 218
IG +L+ LDL N L G+IP +L N+ SL +L L +N L G +P + + ++L+ I
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218
Query: 219 LSYNHLSGPFPSWV---TSNLQMNLVANNFT 246
L YN+LSG P + TS ++LV NN T
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-14
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 9/210 (4%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
N FSG +P E L + L NNN G + ++ L+ L L G +P ++
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD 127
+ ++ L S F+G +P +G+ ++L L+ N G IP LS L SL +S
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 128 IYNVSSSLDFVMS-LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRT- 185
+S + S + L+ L L ++G IP +G +++L +++S N+L G +P T
Sbjct: 533 -NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591
Query: 186 ---LFNIGSL--NYLFLGNNSLSGTLPTQK 210
N ++ N G ++ SG P ++
Sbjct: 592 AFLAINASAVAGNIDLCGGDTTSGLPPCKR 621
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N FSG+VPR+LG+L EL L N SG +P E+ + KL L L+ G+I
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
P++++++ + L S +G+IP +GN L + N G +PS+ + LA
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 8e-11
Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 147 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 206
L L N + G IP+ I +L++LQ+++LS N++ G IP +L +I SL L L NS +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 207 PTQKSE--NLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLH 259
P + +L+ ++L+ N LSG P+ + L ++ + NFT D + + PGL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFT-DNAGLCGIPGLR 535
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 141 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200
L++L ++L I G+IP +G + +L+ LDLS+N+ G IP +L + SL L L N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 201 SLSGTLP 207
SLSG +P
Sbjct: 501 SLSGRVP 507
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 6e-09
Identities = 62/246 (25%), Positives = 96/246 (39%), Gaps = 40/246 (16%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
L ++ N S+P L NL L L N+ S LP + NL+ L L L+
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-S 199
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120
++P L ++ L S N+ + SSLS L +L
Sbjct: 200 DLPPEIELLSALEELDLS-------------------------NNSIIELLSSLSNLKNL 234
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
L +S+ + + + +L NL L L N I S S +G L NL+ LDLS N+L+
Sbjct: 235 SGLELSNN-KLEDLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSN 291
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
+P + L L N L+ K ++ L+ N LS TS+ +
Sbjct: 292 ALPLI--ALLLLLLELLLNLLLTLKALELKLNSIL---LNNNILSNGE----TSSPEALS 342
Query: 241 VANNFT 246
+ +
Sbjct: 343 ILESLN 348
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 51 LYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 110
L L++ G G IP+ +KLR++Q++ S G IP +G+ T L+ L NSF G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 111 PSSLSKLASLDSLRISD 127
P SL +L SL L ++
Sbjct: 483 PESLGQLTSLRILNLNG 499
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 24/103 (23%)
Query: 84 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKN 143
G IP+ I L+S+ GNS +G IP SL + SL+ L +S YN
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS--YNS------------ 477
Query: 144 LTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTL 186
GSIP +G+L +L+ L+L+ N+L+G++P L
Sbjct: 478 ----------FNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 167 NLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHL 224
NL++LDLS N LT + +L L L N+L+ P +L+++DLS N+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 27 LSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKI 86
L N G +P +I L L+ + L+ G IP + + +++ L S F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 87 PDFIGNWTKLKSLRFQGNSFQGPIPSSL 114
P+ +G T L+ L GNS G +P++L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
NL L L N +T IP G L NL+ LDLS NNLT P + SL L L N+
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 202 L 202
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNAL 153
L SL N + I S L +L +L SL + + + NL +L L +
Sbjct: 93 LPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151
Query: 154 ITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KS 211
I S+PS + L NL+ LDLSFN+L+ +P+ L N+ +LN L L N +S LP +
Sbjct: 152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL 208
Query: 212 ENLQNIDLSYNHL 224
L+ +DLS N +
Sbjct: 209 SALEELDLSNNSI 221
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
Y+APE +TEK+D++ FG+ +E+++G++ +D + ++EWA + +
Sbjct: 844 YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHG-SIVEWARYCYSDCHLD 902
Query: 631 GLVDPTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+DP++ N E + V+ +AL CT P RP + V+ L
Sbjct: 903 MWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
++++ N G++P LG++ L VL N+F+G++P +G L L L LN G +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506
Query: 63 PS 64
P+
Sbjct: 507 PA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 343 PE-LYQTSRISPG---SLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIY 398
PE LYQ++ +S L Y N Y+V L FAE +D S + +RVFD+
Sbjct: 251 PESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAE---IDNSIT---AEGKRVFDVL 304
Query: 399 IQGTLRWKDFDISKEAGGPNRAIIKNFNATVSENHLEIHLFWAGKGTCCVPKQGDYGPAI 458
I G +KD DI K +G A++ N VS L I L PK+G + I
Sbjct: 305 INGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVL---------QPKKGTHA-II 354
Query: 459 SALSV 463
+A+ V
Sbjct: 355 NAIEV 359
|
Length = 623 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 9e-04
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
NL L L N IT +P + L NL+TLDLS N +T
Sbjct: 1 TNLETLDLSNNQIT-DLP-PLSNLPNLETLDLSGNKIT 36
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIG 43
L +++N F+GS+P LG L L +L+ N+ SG +P +G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|149674 pfam08693, SKG6, Transmembrane alpha-helix domain | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 476 PSTAGNKNHTGLIVGIAVPLGILGLIAISIVFYMRRKK 513
PS + NK + VG+ +P+G++ + ++ +F R+K
Sbjct: 2 PSDSDNKTTVAIAVGVVIPVGVIAAVLLAFLFLWYRRK 39
|
SKG6/Axl2 are membrane proteins that show polarised intracellular localisation. SKG6_Tmem is the highly conserved transmembrane alpha-helical domain of SKG6 and Axl2 proteins. The full-length fungal protein has a negative regulatory function in cytokinesis. Length = 40 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 755 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.85 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.84 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.82 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.82 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.76 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.76 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.75 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.72 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.71 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.7 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.7 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.69 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.69 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.68 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.68 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.66 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.66 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.65 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.64 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.63 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.62 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.62 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.61 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.58 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.58 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.54 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.48 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.47 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.47 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.46 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.46 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.46 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.45 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.45 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.43 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.41 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.41 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.41 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.4 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.4 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.4 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.4 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.39 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.39 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.38 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.38 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.38 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.38 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.38 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.37 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.37 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.37 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.37 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.37 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.36 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.36 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.36 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.36 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.35 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.35 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.35 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.35 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.35 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.34 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.34 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.34 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.34 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.34 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.34 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.34 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.34 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.34 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.33 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.33 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.33 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.33 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.33 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.33 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.32 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.32 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.32 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.31 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.31 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.31 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.31 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.31 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.31 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.31 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.31 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.3 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.3 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.3 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.3 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.3 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.29 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.29 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.29 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.29 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.29 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.29 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.29 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.29 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.29 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.28 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.28 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.28 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.28 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.28 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.28 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.28 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.28 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.27 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.27 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.27 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.27 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.27 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.27 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.27 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.26 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.26 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.26 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.26 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.25 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.25 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.25 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.25 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.25 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.24 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.24 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.24 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.24 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.24 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.24 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.24 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.24 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.24 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.24 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.24 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.24 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.24 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.24 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.24 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.24 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.23 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.23 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.23 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.23 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.23 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.23 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.23 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.23 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.23 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.22 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.22 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.22 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.22 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.22 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.22 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.22 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.22 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.22 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.22 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.22 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.21 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.21 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.21 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.21 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.21 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.21 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.21 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.2 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.2 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.2 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.2 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.2 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.2 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.19 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.19 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.19 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.19 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.19 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.18 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.18 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.18 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.18 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.18 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.18 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.17 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.17 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.17 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.16 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.16 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.16 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.16 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.16 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.16 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.16 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.16 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.16 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.16 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.16 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.16 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.16 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.16 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.16 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.16 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.15 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.15 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.15 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.15 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.15 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.15 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.14 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.14 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.14 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.14 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.14 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.14 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.13 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.13 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.13 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.13 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.13 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.13 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.13 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.13 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.13 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.13 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.13 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.13 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.13 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.12 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.12 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.12 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.12 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.12 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.12 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.11 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.11 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.11 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.11 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.11 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.11 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.11 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.11 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.1 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.1 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.1 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.09 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.09 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.09 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.09 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.09 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.09 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.09 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.09 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.08 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.08 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.08 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.08 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.08 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.08 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.08 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.08 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.08 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.07 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.07 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.07 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.07 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.07 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.06 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.06 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.06 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.05 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.05 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.05 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.05 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.05 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.04 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.04 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.04 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.04 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.04 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.04 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.04 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.04 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.04 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.04 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.03 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.03 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.03 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.03 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.03 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.02 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.02 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.02 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.01 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.01 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.01 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.0 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.0 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.0 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.0 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.0 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.0 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 98.99 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.99 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 98.99 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 98.98 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 98.98 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.98 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 98.98 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 98.98 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 98.97 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 98.97 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.97 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.97 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 98.96 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 98.96 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 98.96 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 98.96 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 98.94 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.94 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 98.94 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 98.93 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 98.93 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 98.92 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 98.92 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 98.92 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 98.91 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 98.9 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 98.9 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 98.9 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 98.9 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.89 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 98.88 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 98.88 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 98.88 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 98.87 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.87 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 98.86 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 98.85 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 98.84 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 98.83 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 98.82 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 98.81 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 98.81 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 98.8 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.8 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 98.78 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 98.76 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.76 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 98.76 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 98.76 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.76 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 98.76 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 98.75 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 98.75 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.75 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.74 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 98.74 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.73 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 98.71 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 98.71 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 98.7 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 98.7 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 98.69 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 98.68 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 98.62 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 98.62 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 98.6 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.6 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 98.59 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 98.58 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 98.58 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 98.56 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.54 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 98.5 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 98.45 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.45 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.45 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 98.43 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 98.39 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 98.38 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 98.37 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 98.31 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.31 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 98.3 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 98.29 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.28 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 98.27 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 98.23 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 98.21 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.2 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 98.18 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 98.18 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 98.16 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 98.16 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.16 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 98.13 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 98.12 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 98.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.09 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.09 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 98.08 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.06 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.04 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 97.98 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 97.97 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 97.94 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.91 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 97.9 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 97.89 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 97.83 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.8 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 97.8 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 97.78 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 97.73 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 97.71 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 97.67 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.62 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.57 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.57 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 97.55 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.5 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.28 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.2 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.09 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 97.03 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 96.91 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.79 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 96.76 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.76 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.68 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 96.62 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.55 | |
| PF11721 | 174 | Malectin: Di-glucose binding within endoplasmic re | 96.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.48 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 96.38 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 96.31 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 96.15 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 95.81 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.57 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.57 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.43 | |
| PF08693 | 40 | SKG6: Transmembrane alpha-helix domain; InterPro: | 94.26 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 94.21 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.16 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 93.98 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 93.77 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 93.31 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.18 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 92.2 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.9 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 91.27 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 91.03 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 90.84 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.81 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 88.57 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 83.55 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 81.65 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 80.33 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 80.33 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=502.68 Aligned_cols=247 Identities=33% Similarity=0.511 Sum_probs=220.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..|+++++|++|+|++|.+.+.+|..+.++++|++|+|++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 57999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++++.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+....+..+.++++|+.|+|++|.+.+.+|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 99999999999999999999999999999999999999999999999988877777888899999999999999988999
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---cc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SN 235 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~ 235 (755)
.+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|... .++|+.|++++|++++.+|.++. ..
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 89999999999999999998888889999999999999999988887643 37888999999998888887765 22
Q ss_pred cccccccccccc
Q 004413 236 LQMNLVANNFTF 247 (755)
Q Consensus 236 ~~l~l~~n~~~~ 247 (755)
..+++++|+++.
T Consensus 383 ~~L~l~~n~l~~ 394 (968)
T PLN00113 383 FKLILFSNSLEG 394 (968)
T ss_pred CEEECcCCEecc
Confidence 346777777653
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-28 Score=294.79 Aligned_cols=248 Identities=36% Similarity=0.516 Sum_probs=229.0
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.+.+.+|..++++++|++|+|++|.+++.+|..|+++++|++|+|++|.+.+.+|..|.++++|++|++++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.+++.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.|++++|.+....+..+..+++|+.|+|++|.+.+.+|.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 99999999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---cc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SN 235 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~ 235 (755)
.++.+++|+.|+|++|++++.+|..++.+++|+.|++++|.+.+.+|... .++|+.|++++|++++.+|..+. ..
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 99999999999999999999999999999999999999999998888753 47899999999999999888765 22
Q ss_pred ccccccccccccC
Q 004413 236 LQMNLVANNFTFD 248 (755)
Q Consensus 236 ~~l~l~~n~~~~~ 248 (755)
..|++++|.++..
T Consensus 431 ~~L~Ls~N~l~~~ 443 (968)
T PLN00113 431 YFLDISNNNLQGR 443 (968)
T ss_pred CEEECcCCcccCc
Confidence 3588998888753
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-28 Score=258.96 Aligned_cols=110 Identities=47% Similarity=0.752 Sum_probs=99.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC--CCCH-HHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT--EFND-KEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~-~~~ 645 (755)
.||+||||..++++|+|+|||||||||+||+|||++.+.....+...+++|++..++++++.+++||++. +++. +++
T Consensus 242 ~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~ 321 (361)
T KOG1187|consen 242 FGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEV 321 (361)
T ss_pred CccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHH
Confidence 3799999999999999999999999999999999999876555566799999999999999999999984 5554 789
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++++|++|++.+|.+||+|.||+++|+....
T Consensus 322 ~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~ 354 (361)
T KOG1187|consen 322 KKLAELALRCLRPDPKERPTMSQVVKELEGILS 354 (361)
T ss_pred HHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence 999999999999999999999999999965443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=220.94 Aligned_cols=245 Identities=20% Similarity=0.156 Sum_probs=163.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|||++|.|+..-+..|.++++|+.++|.+|.++ .+|...+...+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 46999999999998999999999999999999998 78876666677999999999988777778888888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.++..--..|..-.+|++|+|++|.|+......|..+.+|.+|.|+.|.+.......|..++.|+.|+|..|.|.-.---
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 88754444566556777888888877766666777777777777777777777777777777777777777766522233
Q ss_pred cccCCCCCC------------------------EEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc--cCCCC
Q 004413 161 GIGELQNLQ------------------------TLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENL 214 (755)
Q Consensus 161 ~~~~l~~L~------------------------~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~L 214 (755)
.|..+++|+ +|+|+.|+++..--.++.+++.|+.|+|+.|.|...-+.. +.++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 344445444 5555555554433444555555555555555554433332 22455
Q ss_pred CEEEeecCcCCCCCccccc---ccccccccccccc
Q 004413 215 QNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFT 246 (755)
Q Consensus 215 ~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~ 246 (755)
++|||++|+|+..-+..+. ..-.|+|++|.++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 5555555555533333332 2223555555443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-23 Score=216.29 Aligned_cols=243 Identities=21% Similarity=0.191 Sum_probs=188.3
Q ss_pred eEEecCCcCcCCCchhhcCC--CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 2 LLSVAHNVFSGSVPRELGNL--KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
.||.+++.|.......+..+ +.-+.|||++|++....+..|.++++|++++|..|.++ .+|.......+|+.|+|.+
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeec
Confidence 57888888875433333332 35567999999999888999999999999999999984 6787666677899999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
|.|+..-...+..++.|+.|||+.|.|+..--.+|..-.+|++|+|++|.+.......|.++.+|..|.|++|+++...+
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 99997777889999999999999999995544567777899999999999999999999999999999999999997777
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---c
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---S 234 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~ 234 (755)
..|.++++|+.|+|..|+|.-.--..|.++++|+.|.|..|.++..-...+ +.+++.|+|+.|+++..--.|+. .
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 889999999999999999873223456677777777777777663222211 25666666666666544444544 1
Q ss_pred ccccccccccc
Q 004413 235 NLQMNLVANNF 245 (755)
Q Consensus 235 ~~~l~l~~n~~ 245 (755)
.-+|+|++|.+
T Consensus 295 L~~L~lS~NaI 305 (873)
T KOG4194|consen 295 LEQLDLSYNAI 305 (873)
T ss_pred hhhhccchhhh
Confidence 12355555543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-23 Score=217.83 Aligned_cols=243 Identities=30% Similarity=0.399 Sum_probs=192.6
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCC-CCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSG-TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+|.+++|++. .+-..+..|+.|+.+++.+|++.. -+|..+..|..|..|||++|++ .+.|..+.+-+++-.|+|++|
T Consensus 59 HLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 59 HLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccC
Confidence 5667777776 444556777777777887777763 3677888888888999999888 467888888888999999999
Q ss_pred CCCCCcch-hhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcccc-CCC
Q 004413 81 PFTGKIPD-FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALIT-GSI 158 (755)
Q Consensus 81 ~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~ 158 (755)
+|. .||. .|-+|+.|-.|+|++|++. .+|..+..+..|++|.|++|.+.......+..|++|+.|.+++.+-+ ..+
T Consensus 137 ~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 137 NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred ccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 888 4554 4678888999999999988 67778888999999999999888877777888888889999887654 358
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc-ccCCCCCEEEeecCcCCCCCccccccc--
Q 004413 159 PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT-QKSENLQNIDLSYNHLSGPFPSWVTSN-- 235 (755)
Q Consensus 159 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~L~~L~Ls~N~l~g~ip~~~~~~-- 235 (755)
|.++..+.+|..+|||.|.+. .+|+.+..+.+|+.|+|++|+|+..--. ..-.+|++|++|.|+++ .+|+.+...
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 889999999999999999998 7999999999999999999999843222 12268999999999998 677776622
Q ss_pred -ccccccccccccCCC
Q 004413 236 -LQMNLVANNFTFDRS 250 (755)
Q Consensus 236 -~~l~l~~n~~~~~~~ 250 (755)
..|-+..|+++..++
T Consensus 293 L~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGI 308 (1255)
T ss_pred HHHHHhccCcccccCC
Confidence 246677777776654
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-21 Score=212.17 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=83.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++||+||.++.++||++|||||||||||||+| |+.|+....+.+ |-+.+++|++. +.|+.|+.+
T Consensus 669 IRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~E-------VIe~i~~g~lL--------~~Pe~CP~~ 733 (774)
T KOG1026|consen 669 IRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQE-------VIECIRAGQLL--------SCPENCPTE 733 (774)
T ss_pred eecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHH-------HHHHHHcCCcc--------cCCCCCCHH
Confidence 68999999999999999999999999999999 999998877655 44455666654 347789999
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
++.||+.||+..|.+||+++||...|+.....
T Consensus 734 vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~ 765 (774)
T KOG1026|consen 734 VYSLMLECWNENPKRRPSFKEIHSRLQAWAQA 765 (774)
T ss_pred HHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999876554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-22 Score=213.02 Aligned_cols=256 Identities=22% Similarity=0.307 Sum_probs=150.2
Q ss_pred eEEecCCcCc-CCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFS-GSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
.+++.+|++. .-+|+.|-++..|+.||||+|+++ ..|..+.+-+++-+|+|++|+|..+....|.+|..|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 3456677775 346777888888888888888887 78888888888888888888886544456778888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCC-ChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSS-SLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
++. .+|..+..|..|+.|.|++|.+.-.--..+..|++|+.|.+++.+-+.. .+..+..+.+|..++|+.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 877 6777777888888888888876533233344455555555554332221 2224444445555555555544 444
Q ss_pred ccccCCCCCCEEeCCCCCCCC----------------------CCcccccCCCCCCEEEccCCcCCC-CCCcccC--CCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTG----------------------QIPRTLFNIGSLNYLFLGNNSLSG-TLPTQKS--ENL 214 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~----------------------~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~--~~L 214 (755)
+.+-.+++|+.|+||+|+|+. .+|..++.++.|+.|.+.+|+++- -+|.... ..|
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 444445555555555555441 444445555555555555554441 1233221 344
Q ss_pred CEEEeecCcCCCCCccccc---ccccccccccccccCCCCCCCCCCcccc
Q 004413 215 QNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFDRSNISVFPGLHCL 261 (755)
Q Consensus 215 ~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~~~~~~~~~~l~~l 261 (755)
+.+..++|.+. .+|..+. ..-.|+|+.|.+..-+..+.-+|.+..|
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 44445555443 4444433 2224566666655444444444544444
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-21 Score=209.49 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=81.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|.|||.+..+++|..||||||||||||+++ |.+||-++.+.+. .+.+++|- + ...|++|+..
T Consensus 798 iRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdV-------IkaIe~gy-------R-LPpPmDCP~a 862 (996)
T KOG0196|consen 798 IRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV-------IKAIEQGY-------R-LPPPMDCPAA 862 (996)
T ss_pred eeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHH-------HHHHHhcc-------C-CCCCCCCcHH
Confidence 57999999999999999999999999999999 9999987765542 22222221 1 2336789999
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccCC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGK 681 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~ 681 (755)
+.+||+.|||.|..+||.+.|+|.+|++.+..+.
T Consensus 863 L~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~ 896 (996)
T KOG0196|consen 863 LYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPN 896 (996)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999998776644
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-19 Score=202.82 Aligned_cols=96 Identities=25% Similarity=0.375 Sum_probs=77.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||+++++.+|.|+|||||||+||||+| |..||....+.+.. .. ..+.|+ + +.|..|..+
T Consensus 868 vkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~--~~----~~~ggR----L-----~~P~~CP~~ 932 (1025)
T KOG1095|consen 868 VKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVL--LD----VLEGGR----L-----DPPSYCPEK 932 (1025)
T ss_pred eecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHH--HH----HHhCCc----c-----CCCCCCChH
Confidence 57999999999999999999999999999999 89999876554321 11 122332 2 236678889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+++|+..||+.+|++||++..+++.++.....
T Consensus 933 ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~ 964 (1025)
T KOG1095|consen 933 LYQLMLQCWKHDPEDRPSFRTIVEQDPAISNA 964 (1025)
T ss_pred HHHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence 99999999999999999999999988776554
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-19 Score=187.10 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=77.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|.|||.+..++++.|||||||||+||||+| |+.|+..+...+ +.+.+++|-.. ..|..|+..
T Consensus 368 IkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~e-------v~~~le~GyRl--------p~P~~CP~~ 432 (468)
T KOG0197|consen 368 IKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEE-------VLELLERGYRL--------PRPEGCPDE 432 (468)
T ss_pred ceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHH-------HHHHHhccCcC--------CCCCCCCHH
Confidence 57999999999999999999999999999999 999988766544 22333344322 336678889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+++||..||+.+|++|||+......|+....
T Consensus 433 vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~ 463 (468)
T KOG0197|consen 433 VYELMKSCWHEDPEDRPTFETLREVLEDFFT 463 (468)
T ss_pred HHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence 9999999999999999999998888876543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-21 Score=193.79 Aligned_cols=237 Identities=26% Similarity=0.404 Sum_probs=188.8
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|.+++|.+.. +.+.+.++..|.+|++.+|+++ ..|.+++.+..++.|+.++|.++ .+|..+..+.+|.+|++++|.
T Consensus 49 ~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 49 KLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 46788888874 4445888889999999999887 77888888899999999988884 678888888889999999988
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
+. ++|+.++.+-.|+.|+..+|+++ ..|..+..+.+|..|++.+|++....+..+. ++.|++|+...|-+. .+|..
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChh
Confidence 88 67778888888888888888888 6788888888888888888887777766665 888888888888776 77888
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC---CCCCEEEeecCcCCCCCccccc---cc
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS---ENLQNIDLSYNHLSGPFPSWVT---SN 235 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~Ls~N~l~g~ip~~~~---~~ 235 (755)
++.+.+|..|+|..|++. .+| .|.+|..|..|+++.|+|. .+|.... +++..|||..|+++ ..|+.+. +.
T Consensus 202 lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 888888888888888887 666 7888888888888888887 6665443 67778888888887 6666654 23
Q ss_pred ccccccccccccCC
Q 004413 236 LQMNLVANNFTFDR 249 (755)
Q Consensus 236 ~~l~l~~n~~~~~~ 249 (755)
-+|++++|.++.-+
T Consensus 278 ~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 278 ERLDLSNNDISSLP 291 (565)
T ss_pred hhhcccCCccccCC
Confidence 46788888776543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-21 Score=193.01 Aligned_cols=234 Identities=26% Similarity=0.388 Sum_probs=192.4
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|++.+|+++ .+|++++.+..++.|+.++|+++ .+|+.++.+.+|..|++++|.+. ++|+.++.+-.|..|+..+|+
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccc
Confidence 6889999998 77888999999999999999997 78999999999999999999884 677788889999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++ .+|..+.++.+|..|++.+|++... |...-+++.|++|+...|-+ ...++.++.+.+|..|+|.+|++. .+| .
T Consensus 149 i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-e 223 (565)
T KOG0472|consen 149 IS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-E 223 (565)
T ss_pred cc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-C
Confidence 88 6888888899999999999999844 44444489999999887544 455667888999999999999998 677 7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccc-CCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCcccccc-c-c
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVTS-N-L 236 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~~-~-~ 236 (755)
|.+|..|.+|.++.|++. .+|...+ ++++|..|||..|+++ ..|... +.+|..||+|+|.|++ .|..++. . .
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnlhL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNLHLK 300 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccceee
Confidence 889999999999999998 6776665 8899999999999998 666654 3789999999999984 5555552 2 2
Q ss_pred cccccccccc
Q 004413 237 QMNLVANNFT 246 (755)
Q Consensus 237 ~l~l~~n~~~ 246 (755)
.|-+.+|++.
T Consensus 301 ~L~leGNPlr 310 (565)
T KOG0472|consen 301 FLALEGNPLR 310 (565)
T ss_pred ehhhcCCchH
Confidence 3566677654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=193.01 Aligned_cols=220 Identities=24% Similarity=0.364 Sum_probs=169.7
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|+|++++++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|++|+|++|+++ .+|..+. .+|+.|+|++|+
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR 252 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCc
Confidence 5889999888 5676665 58999999999998 5676654 58999999999986 4666553 479999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.+..... .+ ..+|+.|++++|.++ .+|..
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccc-cCCcc
Confidence 88 6777664 58999999999998 5777654 589999999988765432 12 246888899999888 45544
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccccc-ccccc
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSN-LQMNL 240 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~-~~l~l 240 (755)
+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|....++|+.|+|++|+|+ .+|..+... ..|++
T Consensus 323 l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdL 395 (754)
T PRK15370 323 L--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQA 395 (754)
T ss_pred c--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhh
Confidence 4 3689999999999884 776553 68999999999988 466666678999999999998 567666533 35888
Q ss_pred ccccccc
Q 004413 241 VANNFTF 247 (755)
Q Consensus 241 ~~n~~~~ 247 (755)
++|+++.
T Consensus 396 s~N~L~~ 402 (754)
T PRK15370 396 SRNNLVR 402 (754)
T ss_pred ccCCccc
Confidence 8888763
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=188.78 Aligned_cols=219 Identities=22% Similarity=0.350 Sum_probs=140.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|+|++|+|+ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|++++|+
T Consensus 203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCc
Confidence 5777777777 4555443 47777777777776 4565443 46777777777775 5565553 467777777777
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|+.|++++|.+...... + .++|+.|++++|.++. +|..
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcc-c--cccceeccccCCcccc-CChh
Confidence 77 4665553 46777777777777 3454432 3677777777766543221 1 2567777777777763 5554
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc-------c
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-------S 234 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~-------~ 234 (755)
+. ++|+.|+|++|+++ .+|..+ .++|+.|+|++|.|+ .+|......|+.|++++|+|+ .+|..+. .
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 42 57777778777777 466544 257777778777777 445545556777777777776 4554432 1
Q ss_pred cccccccccccc
Q 004413 235 NLQMNLVANNFT 246 (755)
Q Consensus 235 ~~~l~l~~n~~~ 246 (755)
...+++.+|+++
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 224666666654
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=166.58 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=77.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..||+||.+....|++.+|||||||+||||+| |+.|+....+.+ +..++++|... ..|.+|+.+
T Consensus 462 vkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfE-------m~~ylkdGyRl--------aQP~NCPDe 526 (563)
T KOG1024|consen 462 VKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFE-------MEHYLKDGYRL--------AQPFNCPDE 526 (563)
T ss_pred ccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHH-------HHHHHhcccee--------cCCCCCcHH
Confidence 57999999999999999999999999999999 999998776655 23344444311 235678889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
++.+|.-||+..|++||+++|++.-|.+
T Consensus 527 Lf~vMacCWallpeeRPsf~Qlv~cLse 554 (563)
T KOG1024|consen 527 LFTVMACCWALLPEERPSFSQLVICLSE 554 (563)
T ss_pred HHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 9999999999999999999999988864
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=193.87 Aligned_cols=238 Identities=25% Similarity=0.241 Sum_probs=144.6
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|++.++.+. .+|..| .+.+|+.|+|.+|++. .++..+..+++|+.|+|++|.....+|. +..+++|++|+|++|.
T Consensus 593 ~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 593 LLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred EEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 4556666554 455555 3566777777777665 4566666667777777766554455553 5666677777776666
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
....+|..++++++|+.|++++|.....+|..+ ++++|+.|++++|......+. ...+|+.|+|++|.+. .+|..
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~ 743 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSN 743 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-ccccc
Confidence 555666666667777777776654444555544 566666666666544332221 1234555555555544 22221
Q ss_pred ------------------------------ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc-
Q 004413 162 ------------------------------IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK- 210 (755)
Q Consensus 162 ------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~- 210 (755)
...+++|+.|+|++|.....+|..+.++++|+.|++++|...+.+|...
T Consensus 744 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~ 823 (1153)
T PLN03210 744 LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN 823 (1153)
T ss_pred ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence 1123567777777777666777778888888888888775444555543
Q ss_pred CCCCCEEEeecCcCCCCCcccccccccccccccccccC
Q 004413 211 SENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 248 (755)
Q Consensus 211 ~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~~~ 248 (755)
+++|+.|+|++|..-..+|........|+|++|.++..
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred ccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 46778888887766556665444444577777776543
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=180.60 Aligned_cols=191 Identities=26% Similarity=0.340 Sum_probs=113.3
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|+|+.|+|+ .+|..+. ++|+.|+|.+|+++ .+|. .+++|++|+|++|+++. +|.. .++|+.|++++|.
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCc
Confidence 6899999998 6888776 48999999999998 5664 25789999999999874 4542 3577888888887
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++ .+|..+ .+|+.|++++|+++ .+|.. +++|+.|++++|.+..... ...+|+.|++++|.+++ +|..
T Consensus 274 L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 274 LT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred hh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCC----CcccccccccccCcccc-cccc
Confidence 76 344432 45667777777776 34432 3567777777766554321 11234455555555542 3321
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCC
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~ 225 (755)
..+|+.|+|++|+|+ .+|.. ..+|+.|++++|+|+. +|. ...+|+.|+|++|+|+
T Consensus 341 ---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~-l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 341 ---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPA-LPSGLKELIVSGNRLT 395 (788)
T ss_pred ---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccc-cccccceEEecCCccc
Confidence 134555555555555 23321 1234444444444442 222 1233444444444444
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-17 Score=177.93 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=73.6
Q ss_pred ccccchhhhhc---CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMR---GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~---~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.-|||||+++. ..|+..+||||||+|+|||+||.-||.. ...+.. ++.-|+- .+-|++......+.
T Consensus 554 ilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi-~~~dqI--------ifmVGrG--~l~pd~s~~~s~~p 622 (678)
T KOG0193|consen 554 LLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI-QNRDQI--------IFMVGRG--YLMPDLSKIRSNCP 622 (678)
T ss_pred hhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC-CChhhe--------EEEeccc--ccCccchhhhccCH
Confidence 45999999874 5899999999999999999999999973 222211 0111111 11223333345678
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
++|.+|...||..++++||.+.+++.+|+....
T Consensus 623 k~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~ 655 (678)
T KOG0193|consen 623 KAMKRLLSDCWKFDREERPLFPQLLSKLEELLP 655 (678)
T ss_pred HHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence 889999999999999999999999998887655
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-18 Score=174.95 Aligned_cols=246 Identities=22% Similarity=0.227 Sum_probs=186.7
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccc-cCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNS-WGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
.|.|..|+|+...|.+|+.+++|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|+......|.+|..|+.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 578999999987788999999999999999999988899999999999887766 8887666678999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCc-cccCCCCCCeeecCCCCCCCC------------Chhhhc--------
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKLASLDSLRISDIYNVSS------------SLDFVM-------- 139 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~------------~~~~l~-------- 139 (755)
++.....+.|..|++|..|.+..|.+. .++. .|..+..++++.+..|.+... .+-.++
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 999888889999999999999999998 4555 788899999998877662210 000011
Q ss_pred -----------------CCCCCCEEEeeCccccCCCC-ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCc
Q 004413 140 -----------------SLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201 (755)
Q Consensus 140 -----------------~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 201 (755)
.+..+..=-.+.+...+..| ..|..+++|+.|+|++|++++.-+.+|.++..++.|.|..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 11111111112222222333 257888999999999999998888889999999999999998
Q ss_pred CCCCCCcc--cCCCCCEEEeecCcCCCCCccccc---ccccccccccccccC
Q 004413 202 LSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFD 248 (755)
Q Consensus 202 l~~~~p~~--~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~ 248 (755)
|...-... .+..|+.|+|.+|+|+..-|..+. ...+|+|..|+|.++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 87322221 236888999999999876676665 234688888888766
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-16 Score=190.80 Aligned_cols=237 Identities=22% Similarity=0.268 Sum_probs=184.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|+|.+|++. .+|..+..+++|+.|+|++|.....+|. ++.+++|++|+|++|.....+|..+.++++|+.|++++|
T Consensus 614 ~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 614 VKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 46899999987 6788888999999999998865556774 888999999999998877889999999999999999998
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChh------------------------
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD------------------------ 136 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~------------------------ 136 (755)
.....+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+......
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 7666777765 6888999999888655555543 34667777776664332110
Q ss_pred -----hhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC
Q 004413 137 -----FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS 211 (755)
Q Consensus 137 -----~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 211 (755)
.....++|+.|+|++|.....+|..++++++|+.|+|++|...+.+|..+ .+++|+.|++++|.....+|. ..
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-~~ 845 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-IS 845 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-cc
Confidence 11124578999999998888899999999999999999986555788766 789999999999876656654 34
Q ss_pred CCCCEEEeecCcCCCCCccccc--c-cccccccc-cccc
Q 004413 212 ENLQNIDLSYNHLSGPFPSWVT--S-NLQMNLVA-NNFT 246 (755)
Q Consensus 212 ~~L~~L~Ls~N~l~g~ip~~~~--~-~~~l~l~~-n~~~ 246 (755)
.+|+.|+|++|.|+ .+|.++. . ...|++.+ |++.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 78999999999998 6888776 2 23577776 3444
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-16 Score=179.33 Aligned_cols=212 Identities=23% Similarity=0.299 Sum_probs=146.1
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|+|++|+|+. +|. .+++|++|+|++|+|+ .+|.. .++|+.|+|++|.+. .+|.. ..+|+.|++++|
T Consensus 225 ~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 225 TTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCC
Confidence 468999999984 664 3579999999999998 56643 468899999999885 34443 256888999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
+++ .+|.. +++|+.|+|++|++++ +|.. ..+|+.|++++|.+..... ...+|+.|+|++|+++ .+|.
T Consensus 293 ~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls-~LP~ 359 (788)
T PRK15387 293 QLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLA-SLPT 359 (788)
T ss_pred ccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccccc----cccccceEecCCCccC-CCCC
Confidence 888 45543 4679999999998884 4542 2356777787777654321 1246888888888887 3453
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccccccccccc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l 240 (755)
. ..+|+.|++++|+++ .+|.. ..+|+.|+|++|+|++ +|. ..++|+.|++++|+|++ +|........|++
T Consensus 360 l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~-l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~L 429 (788)
T PRK15387 360 L---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV-LPSELKELMVSGNRLTS-LPMLPSGLLSLSV 429 (788)
T ss_pred C---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCC-cccCCCEEEccCCcCCC-CCcchhhhhhhhh
Confidence 2 356777778888777 35543 2467778888887774 333 23567778888887773 6654433445777
Q ss_pred ccccccc
Q 004413 241 VANNFTF 247 (755)
Q Consensus 241 ~~n~~~~ 247 (755)
++|+++.
T Consensus 430 s~NqLt~ 436 (788)
T PRK15387 430 YRNQLTR 436 (788)
T ss_pred ccCcccc
Confidence 7777663
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-18 Score=191.20 Aligned_cols=216 Identities=29% Similarity=0.434 Sum_probs=125.6
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
+|+++++++|+++ .+|+.++.+.+|+.|++.+|++ ..+|..+..+++|+.|.+..|.+. .+|....+++.|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4455555555544 3344445555555555555544 234444444444444444444444 344444444444444444
Q ss_pred CCCCCCCCCccc--------------------------cCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccC
Q 004413 103 GNSFQGPIPSSL--------------------------SKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 103 ~n~l~~~~p~~l--------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 156 (755)
.|+|. .+|..+ ..+..|+.|++.+|.+.....+.+.++.+|+.|+|++|.+..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 44443 222211 123456667777777777777777777777777777777774
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc-ccCCCCCEEEeecCcCCC-CCccccc-
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT-QKSENLQNIDLSYNHLSG-PFPSWVT- 233 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~L~~L~Ls~N~l~g-~ip~~~~- 233 (755)
.....+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. .+|. ..++.|+.+|||.|+|+. .+|....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 44445677777777777777777 57777777777777777777777 3443 234677777777777763 4444444
Q ss_pred ccc-cccccccc
Q 004413 234 SNL-QMNLVANN 244 (755)
Q Consensus 234 ~~~-~l~l~~n~ 244 (755)
..+ .|||++|.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 344 47777775
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-17 Score=172.80 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=77.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|.|||.+....++.|+|||+|||+||||.| |-.||....- ..|+.++++|-. .+-++.|+.+
T Consensus 430 IKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl-------SqVY~LLEkgyR--------M~~PeGCPpk 494 (1157)
T KOG4278|consen 430 IKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-------SQVYGLLEKGYR--------MDGPEGCPPK 494 (1157)
T ss_pred ccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH-------HHHHHHHhcccc--------ccCCCCCCHH
Confidence 57999999999999999999999999999999 8888865432 225555554432 2346778889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+++||..||+-+|.+||++.|+.+.+|...
T Consensus 495 VYeLMraCW~WsPsDRPsFaeiHqafEtmf 524 (1157)
T KOG4278|consen 495 VYELMRACWNWSPSDRPSFAEIHQAFETMF 524 (1157)
T ss_pred HHHHHHHHhcCCcccCccHHHHHHHHHHHh
Confidence 999999999999999999999999888643
|
|
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-16 Score=175.55 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=77.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||=|.+....+|.++|||||||.+||++| |.+|++.....+. ...++.|.. ...|+-|...
T Consensus 864 ikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI-------~dlle~geR--------LsqPpiCtiD 928 (1177)
T KOG1025|consen 864 IKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEI-------PDLLEKGER--------LSQPPICTID 928 (1177)
T ss_pred cHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHh-------hHHHhcccc--------CCCCCCccHH
Confidence 46999999999999999999999999999999 9999998765442 233343322 1336678889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
++.+++.||..|+..||++++......+....
T Consensus 929 Vy~~mvkCwmid~~~rp~fkel~~~fs~~ard 960 (1177)
T KOG1025|consen 929 VYMVMVKCWMIDADSRPTFKELAEEFSRMARD 960 (1177)
T ss_pred HHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence 99999999999999999999999877764443
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-16 Score=167.37 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=76.8
Q ss_pred eccccccchhhhh--cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 566 SNFHGYLAPEYAM--RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 566 ~df~gy~aPE~~~--~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
+|+++|||||.+. ...|++|+||||||||||||+||+.||....... +..++ ...+.. ...+.+
T Consensus 205 ~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~---~~~~v---~~~~~R--------p~~p~~ 270 (362)
T KOG0192|consen 205 AGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQ---VASAV---VVGGLR--------PPIPKE 270 (362)
T ss_pred CCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHH---HHHHH---HhcCCC--------CCCCcc
Confidence 4557899999999 6699999999999999999999999998765422 22222 111111 122334
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+...+..++.+||+.+|..||+|.+++.+|+.....
T Consensus 271 ~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~ 306 (362)
T KOG0192|consen 271 CPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSH 306 (362)
T ss_pred CCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHh
Confidence 667888899999999999999999999999976553
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-17 Score=169.83 Aligned_cols=234 Identities=21% Similarity=0.182 Sum_probs=178.5
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC-CCCCCCcchhhc
Q 004413 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD-APFTGKIPDFIG 91 (755)
Q Consensus 13 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~ 91 (755)
.+|..+. ..-..++|..|+|+...|.+|..+++|+.|||++|+|+.+-|.+|..+++|..|-+.+ |+|+....+.|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4665554 4777899999999977778899999999999999999999999999999998887766 889966667899
Q ss_pred CCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcccc------------CCCC
Q 004413 92 NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALIT------------GSIP 159 (755)
Q Consensus 92 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~p 159 (755)
+|..|+.|.+.-|++.-.....|..+++|..|.+.+|.+.......+..+..++.+.+..|.+- ...|
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 9999999999999999777788999999999999999888777778888888999888887731 1122
Q ss_pred ccccCCCC----------------------CCEE---eCCCCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCCcccC--
Q 004413 160 SGIGELQN----------------------LQTL---DLSFNNLTGQIP-RTLFNIGSLNYLFLGNNSLSGTLPTQKS-- 211 (755)
Q Consensus 160 ~~~~~l~~----------------------L~~L---~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-- 211 (755)
..++.... ++.+ -.+.+...+..| ..|..+++|++|+|++|.|+..-+..+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 22222211 1111 112222333444 3578899999999999999976665543
Q ss_pred CCCCEEEeecCcCCCCCccccc----ccccccccccccccCC
Q 004413 212 ENLQNIDLSYNHLSGPFPSWVT----SNLQMNLVANNFTFDR 249 (755)
Q Consensus 212 ~~L~~L~Ls~N~l~g~ip~~~~----~~~~l~l~~n~~~~~~ 249 (755)
..+++|.|..|+|. .+-..+. ....|+|.+|++++..
T Consensus 298 a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 298 AELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred hhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEe
Confidence 78999999999996 3322222 3346899999998753
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-18 Score=153.57 Aligned_cols=157 Identities=25% Similarity=0.442 Sum_probs=105.4
Q ss_pred cCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 004413 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 98 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 98 (755)
-++.+++.|.|++|+++ .+|+.+..+.+|+.|++++|++ .++|..++.+++|+.|+++-|++. .+|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34566667777777776 5566677777777777777776 355666667777777777766666 56666766777777
Q ss_pred EEccCCCCCC-CCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCC
Q 004413 99 LRFQGNSFQG-PIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177 (755)
Q Consensus 99 L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 177 (755)
|||..|++.. .+|..|..|+.|+.| +|++|.+. .+|..++.+++|+.|.+.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlral------------------------yl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRAL------------------------YLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHH------------------------HhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 7776666652 345555555444444 45555554 566677777777777777777
Q ss_pred CCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 178 LTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 178 l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+. .+|..++.+..|+.|.+++|+++-
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceeee
Confidence 76 577777777777788888887773
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-17 Score=173.30 Aligned_cols=248 Identities=23% Similarity=0.306 Sum_probs=183.4
Q ss_pred CeEEecCCcCc-CCCchhhcCCCCCCEEEccCccCCCC----CcccccCCccCcEEEccccCCCC------CCchhhhcC
Q 004413 1 MLLSVAHNVFS-GSVPRELGNLKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYLNSWGAGG------EIPSTYAKL 69 (755)
Q Consensus 1 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l 69 (755)
..|+|..+.++ ......+..+.+|+.|+|++|.++.. ++..+...++|++|+++++.+.+ .++..+.++
T Consensus 1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 36889999998 44566677888999999999998532 55567778889999999988762 234567788
Q ss_pred CCCCEEEccCCCCCCCcchhhcCCCC---CcEEEccCCCCCC----CCCccccCC-CCCCeeecCCCCCCCCCh----hh
Q 004413 70 RNMQTLWASDAPFTGKIPDFIGNWTK---LKSLRFQGNSFQG----PIPSSLSKL-ASLDSLRISDIYNVSSSL----DF 137 (755)
Q Consensus 70 ~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~~~~~~~----~~ 137 (755)
++|++|++++|.+....+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+..... ..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 99999999999998766766666665 9999999999873 233456667 899999999998774322 35
Q ss_pred hcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCCcc
Q 004413 138 VMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPTQ 209 (755)
Q Consensus 138 l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 209 (755)
+..+.+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++. +...+..+++|+.|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 66778899999999998853 333455667999999999998753 3345667889999999999988522111
Q ss_pred -------cCCCCCEEEeecCcCCCC----Cccccc---ccccccccccccccC
Q 004413 210 -------KSENLQNIDLSYNHLSGP----FPSWVT---SNLQMNLVANNFTFD 248 (755)
Q Consensus 210 -------~~~~L~~L~Ls~N~l~g~----ip~~~~---~~~~l~l~~n~~~~~ 248 (755)
..+.|+.|++++|.++.. +...+. ....+++++|.++..
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 136899999999999732 222222 223578888877633
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-16 Score=166.88 Aligned_cols=91 Identities=22% Similarity=0.352 Sum_probs=71.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
..|||||+++....++|.||||||||||||+||..||........ -| .+-...| ...|..|+.-
T Consensus 275 VaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI----Iw-----------GVGsNsL~LpvPstcP~G 339 (904)
T KOG4721|consen 275 VAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI----IW-----------GVGSNSLHLPVPSTCPDG 339 (904)
T ss_pred HhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhee----EE-----------eccCCcccccCcccCchH
Confidence 579999999999999999999999999999999999875432110 01 0001112 2346677778
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.-|+..||+..|..||++++++.-|+
T Consensus 340 fklL~Kqcw~sKpRNRPSFrqil~Hld 366 (904)
T KOG4721|consen 340 FKLLLKQCWNSKPRNRPSFRQILLHLD 366 (904)
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHh
Confidence 888999999999999999999998776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-16 Score=170.14 Aligned_cols=227 Identities=20% Similarity=0.205 Sum_probs=175.5
Q ss_pred CeEEecCCcCcCC----CchhhcCCCCCCEEEccCccCCC------CCcccccCCccCcEEEccccCCCCCCchhhhcCC
Q 004413 1 MLLSVAHNVFSGS----VPRELGNLKELTVLSFGNNNFSG------TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLR 70 (755)
Q Consensus 1 ~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 70 (755)
++|+|+++.++.. ++..+...++|+.|+++++.+.+ .++..+..+++|++|+|++|.+....+..+..+.
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 4789999998643 56667788899999999998862 2345677889999999999999877777776666
Q ss_pred C---CCEEEccCCCCCC----CcchhhcCC-CCCcEEEccCCCCCCC----CCccccCCCCCCeeecCCCCCCCCChh--
Q 004413 71 N---MQTLWASDAPFTG----KIPDFIGNW-TKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRISDIYNVSSSLD-- 136 (755)
Q Consensus 71 ~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~-- 136 (755)
+ |++|++++|+++. .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+......
T Consensus 106 ~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 106 RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 6 9999999999883 334456677 8999999999999843 344567788999999999987754332
Q ss_pred --hhcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCCCccccc-----CCCCCCEEEccCCcCCCC
Q 004413 137 --FVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQIPRTLF-----NIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 137 --~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~ 205 (755)
.+..+++|+.|+|++|.+++. +...+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++..
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 455667999999999998744 344567789999999999999863333332 247999999999999731
Q ss_pred C----Cc--ccCCCCCEEEeecCcCCCC
Q 004413 206 L----PT--QKSENLQNIDLSYNHLSGP 227 (755)
Q Consensus 206 ~----p~--~~~~~L~~L~Ls~N~l~g~ 227 (755)
. .. ...++|+.|++++|.++..
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 1 11 1127899999999999854
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-16 Score=166.31 Aligned_cols=99 Identities=26% Similarity=0.305 Sum_probs=75.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.++.+|.|+|||||||++||+++ |..||......+ +..|+. .++... ..+...+..
T Consensus 326 irWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~---v~~kI~---~~~~r~--------~~~~~~p~~ 391 (474)
T KOG0194|consen 326 IRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYE---VKAKIV---KNGYRM--------PIPSKTPKE 391 (474)
T ss_pred ceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHH---HHHHHH---hcCccC--------CCCCCCHHH
Confidence 57999999999999999999999999999999 899998765432 333331 222111 112244556
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccCC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGK 681 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~ 681 (755)
+..++..||+.+|++||+|.+|++.|+.......
T Consensus 392 ~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~ 425 (474)
T KOG0194|consen 392 LAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE 425 (474)
T ss_pred HHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence 6677779999999999999999999998766544
|
|
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-16 Score=168.33 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=70.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCC-CCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDP-TLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~ 646 (755)
+.|+|||.+.+++++.+||||+|||.+|||+| |..|+-...+.. +. +.+|. ....-+..|.+
T Consensus 279 fAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~q---IL-------------~~iD~~erLpRPk~cse 342 (1039)
T KOG0199|consen 279 FAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQ---IL-------------KNIDAGERLPRPKYCSE 342 (1039)
T ss_pred ccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHH---HH-------------HhccccccCCCCCCChH
Confidence 57999999999999999999999999999999 788876544322 11 12221 11234677899
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++++++.||...|.+|||+..+++
T Consensus 343 dIY~imk~cWah~paDRptFsair~ 367 (1039)
T KOG0199|consen 343 DIYQIMKNCWAHNPADRPTFSAIRE 367 (1039)
T ss_pred HHHHHHHHhccCCccccccHHHHHH
Confidence 9999999999999999999999974
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-17 Score=148.80 Aligned_cols=163 Identities=22% Similarity=0.351 Sum_probs=135.3
Q ss_pred ccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCC
Q 004413 42 IGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121 (755)
Q Consensus 42 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 121 (755)
+.++.++..|-|++|.++ .+|..+..+.+|+.|++++|++. .+|..++.|++|++|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456778888889999885 56667888999999999999888 78888889999999999988887 7888888888888
Q ss_pred eeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCc
Q 004413 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201 (755)
Q Consensus 122 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 201 (755)
.|++.+|++.+. .+|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+..|.
T Consensus 106 vldltynnl~e~-----------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNEN-----------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccccc-----------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 888777653321 46777888899999999999999 899999999999999999999
Q ss_pred CCCCCCccc--CCCCCEEEeecCcCCCCCccccc
Q 004413 202 LSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 202 l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
+. .+|... +..|++|.+.+|.++ .+|+.++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 98 566554 478999999999998 5666554
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-17 Score=180.99 Aligned_cols=216 Identities=27% Similarity=0.351 Sum_probs=188.5
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+++++++|+++ .+|..++.+.+|+.|+..+|+++ .+|..+..+.+|+.|.+..|.+. .+|.....++.|++|+|..|
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 47899999999 56699999999999999999996 78999999999999999999984 56777788999999999999
Q ss_pred CCCCCcchhh-c-------------------------CCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCC
Q 004413 81 PFTGKIPDFI-G-------------------------NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSS 134 (755)
Q Consensus 81 ~l~~~~p~~~-~-------------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 134 (755)
++.. +|+.+ . .+..|+.|.+.+|.++......|.++.+|+.|+|++|.+....
T Consensus 321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 321 NLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred cccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 9873 33322 1 1235788889999999877778999999999999999999999
Q ss_pred hhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCC-CCcccC-C
Q 004413 135 LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGT-LPTQKS-E 212 (755)
Q Consensus 135 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~-~ 212 (755)
...+.++..|+.|+|++|+++ .+|+.+..+..|++|....|++. ..| .+..++.|+.+|++.|.|+.. +|.... +
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 999999999999999999999 88899999999999999999998 677 899999999999999999853 455455 8
Q ss_pred CCCEEEeecCc
Q 004413 213 NLQNIDLSYNH 223 (755)
Q Consensus 213 ~L~~L~Ls~N~ 223 (755)
+|++|||++|.
T Consensus 477 ~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 477 NLKYLDLSGNT 487 (1081)
T ss_pred ccceeeccCCc
Confidence 99999999998
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-16 Score=164.40 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=75.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||.+...++|..||||-|||-+|||++ |.+|+....+.+. ...+++|.. ...|+.|+..
T Consensus 556 IKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDV-------I~~iEnGeR--------lP~P~nCPp~ 620 (974)
T KOG4257|consen 556 IKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDV-------IGHIENGER--------LPCPPNCPPA 620 (974)
T ss_pred eeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccce-------EEEecCCCC--------CCCCCCCChH
Confidence 57999999999999999999999999999998 9999876443221 111122221 2357788889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
++.|+-.||+.+|.+||.+.|+...|+....
T Consensus 621 LYslmskcWayeP~kRPrftei~~~lsdv~q 651 (974)
T KOG4257|consen 621 LYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ 651 (974)
T ss_pred HHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999988876443
|
|
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-15 Score=153.80 Aligned_cols=90 Identities=29% Similarity=0.453 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.|+||||||+++|||+| |+.|+......+ + .... .++.... .+..+...
T Consensus 169 ~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~---~---~~~~-~~~~~~~--------~~~~~~~~ 233 (259)
T PF07714_consen 169 LRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEE---I---IEKL-KQGQRLP--------IPDNCPKD 233 (259)
T ss_dssp GGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHH---H---HHHH-HTTEETT--------SBTTSBHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---c---cccc-cccccce--------eccchhHH
Confidence 47999999999999999999999999999999 778876553221 2 2222 2222211 12223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
+.+++..||+.+|++||+|.++++.|
T Consensus 234 ~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 234 IYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp HHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 88899999999999999999999876
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-14 Score=149.09 Aligned_cols=91 Identities=26% Similarity=0.418 Sum_probs=70.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.|+|||||||+++||+| |+.|+......+ +..+ +..+... ..+..+..++
T Consensus 191 ~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~---~~~~----i~~~~~~--------~~~~~~~~~~ 255 (283)
T cd05048 191 RWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE---VIEM----IRSRQLL--------PCPEDCPARV 255 (283)
T ss_pred cccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH----HHcCCcC--------CCcccCCHHH
Confidence 5999999999999999999999999999998 999987654322 2222 2222211 1233445678
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+||+.+|.+||++.||++.|+.
T Consensus 256 ~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 256 YALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 899999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-14 Score=148.84 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=68.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.++|||||||++||++| |+.|+......+ +.... ..+. -.+. +.+....+
T Consensus 175 ~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~------~~~~i-~~~~----~~~~----~~~~~~~~ 239 (268)
T cd05063 175 RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHE------VMKAI-NDGF----RLPA----PMDCPSAV 239 (268)
T ss_pred eecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHH------HHHHH-hcCC----CCCC----CCCCCHHH
Confidence 4999999999999999999999999999998 999986543221 11111 1111 0011 11234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+||+.+|++||+|.+|++.|++.
T Consensus 240 ~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 240 YQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 8999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-14 Score=147.58 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=70.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+...+.++.++|||||||++||++| |+.|+....... +.++ +..+... .++. .+...+
T Consensus 176 ~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~---~~~~----~~~~~~~--~~~~------~~~~~~ 240 (279)
T cd05111 176 KWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE---VPDL----LEKGERL--AQPQ------ICTIDV 240 (279)
T ss_pred cccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH----HHCCCcC--CCCC------CCCHHH
Confidence 6999999999999999999999999999998 999987543322 2222 2222211 1111 123456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||+|.|+++.|+.....
T Consensus 241 ~~li~~c~~~~p~~Rps~~el~~~l~~~~~~ 271 (279)
T cd05111 241 YMVMVKCWMIDENVRPTFKELANEFTRMARD 271 (279)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence 7788999999999999999999999875543
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-14 Score=151.82 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=69.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++....++.|+|||||||++|||+| |+.|++.....+ +.. ....+... ..+..+...+
T Consensus 176 ~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~~ 240 (316)
T cd05108 176 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---ISS----ILEKGERL--------PQPPICTIDV 240 (316)
T ss_pred eecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH---HHH----HHhCCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999998 999987543222 111 11111110 0111233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|++||+|.+++..|.....
T Consensus 241 ~~li~~cl~~~p~~Rps~~~l~~~l~~~~~ 270 (316)
T cd05108 241 YMIMVKCWMIDADSRPKFRELIIEFSKMAR 270 (316)
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence 889999999999999999999999886544
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-14 Score=147.99 Aligned_cols=92 Identities=23% Similarity=0.283 Sum_probs=69.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.++|||||||+++|+++ |+.|+......+ +.+. ..++... ..+..+...+
T Consensus 173 ~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~---~~~~----~~~~~~~--------~~~~~~~~~~ 237 (266)
T cd05064 173 LWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD---VIKA----VEDGFRL--------PAPRNCPNLL 237 (266)
T ss_pred eecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHH----HHCCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999775 999987544322 2222 2222111 1122344568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..||+.+|++||+|.++.+.|+..
T Consensus 238 ~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 238 HQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred HHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 8899999999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-14 Score=144.11 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=67.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH-HHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK-EALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~-~~~~ 647 (755)
..|||||-+++..|+.++||||||+++||+.+||-|+-..... .. .|+.- +..+++......|.+ ...+
T Consensus 241 ~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~-~~---~~~~L------l~~Iv~~ppP~lP~~~fS~e 310 (364)
T KOG0581|consen 241 SAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPP-YL---DIFEL------LCAIVDEPPPRLPEGEFSPE 310 (364)
T ss_pred ccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCC-CC---CHHHH------HHHHhcCCCCCCCcccCCHH
Confidence 4599999999999999999999999999999999998653110 11 12111 112344222233333 5567
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+....-.|++.+|.+||+..|+++
T Consensus 311 f~~FV~~CL~Kdp~~R~s~~qLl~ 334 (364)
T KOG0581|consen 311 FRSFVSCCLRKDPSERPSAKQLLQ 334 (364)
T ss_pred HHHHHHHHhcCCcccCCCHHHHhc
Confidence 778888999999999999999874
|
|
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-14 Score=146.82 Aligned_cols=92 Identities=25% Similarity=0.340 Sum_probs=69.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++||||||++++|++| |+.|+......+ +.+++ ..+... + .+..+...+
T Consensus 173 ~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~---~~~~~----~~~~~~----~----~~~~~~~~l 237 (266)
T cd05033 173 RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQD---VIKAV----EDGYRL----P----PPMDCPSAL 237 (266)
T ss_pred cccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHH---HHHHH----HcCCCC----C----CCCCCCHHH
Confidence 5999999999999999999999999999998 999986543322 22222 111110 1 112234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+|++.+|++||+|.||+++|+..
T Consensus 238 ~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 238 YQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 8999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-14 Score=144.63 Aligned_cols=88 Identities=22% Similarity=0.367 Sum_probs=65.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|||||+++...|+.|+||||+||..+||.+|.+|+....++....+ +.+-.-|.+.. .....+
T Consensus 175 PfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlfl------------Ipk~~PP~L~~---~~S~~~ 239 (467)
T KOG0201|consen 175 PFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFL------------IPKSAPPRLDG---DFSPPF 239 (467)
T ss_pred ccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEe------------ccCCCCCcccc---ccCHHH
Confidence 459999999988999999999999999999999999876554321000 11222333422 233346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+-.|++.+|+.||++.++++
T Consensus 240 kEFV~~CL~k~P~~RpsA~~LLK 262 (467)
T KOG0201|consen 240 KEFVEACLDKNPEFRPSAKELLK 262 (467)
T ss_pred HHHHHHHhhcCcccCcCHHHHhh
Confidence 67778999999999999988864
|
|
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-14 Score=147.04 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=74.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.|+|||||||+++||+| |+.|+......+ +. .. ...+. .+.. +......+
T Consensus 183 ~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~---~~---~~-~~~~~-----~~~~---~~~~~~~~ 247 (297)
T cd05089 183 RWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAE---LY---EK-LPQGY-----RMEK---PRNCDDEV 247 (297)
T ss_pred cccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HH---HH-HhcCC-----CCCC---CCCCCHHH
Confidence 5999999999999999999999999999998 999987543322 11 11 11111 0111 11223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccCCCCCCCCCC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVISKPSYL 689 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~~~~~~~~~ 689 (755)
.+++..|++.+|.+||+|.+|+++|+...........+..+
T Consensus 248 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~~~~~~~~ 288 (297)
T cd05089 248 YELMRQCWRDRPYERPPFAQISVQLSRMLEARKAYVNMALF 288 (297)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcccccchhh
Confidence 78999999999999999999999998877655443333333
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-14 Score=143.46 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=66.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++|||||||+++|++| |+.|+...... ....++. ++.. ...+. .....+
T Consensus 166 ~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~---~~~~~i~----~~~~--~~~~~------~~~~~~ 230 (256)
T cd05114 166 KWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNY---EVVEMIS----RGFR--LYRPK------LASMTV 230 (256)
T ss_pred hhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHH---HHHHHHH----CCCC--CCCCC------CCCHHH
Confidence 6999999998899999999999999999999 88898654322 2222221 1211 11111 123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+||+.+|++||+|.++++.|.
T Consensus 231 ~~li~~c~~~~p~~Rps~~~l~~~l~ 256 (256)
T cd05114 231 YEVMYSCWHEKPEGRPTFAELLRAIT 256 (256)
T ss_pred HHHHHHHccCCcccCcCHHHHHHhhC
Confidence 89999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-14 Score=144.12 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=68.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+.....++.++||||||++++|++| |+.|+....... +.. .+..+... ..+......+
T Consensus 169 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~~ 233 (261)
T cd05068 169 KWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE---VLQ----QVDQGYRM--------PCPPGCPKEL 233 (261)
T ss_pred eccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHH----HHHcCCCC--------CCCCcCCHHH
Confidence 5999999999999999999999999999999 888886543221 111 11111100 1112234568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||+|.++.+.|+.
T Consensus 234 ~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 234 YDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred HHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 889999999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-14 Score=144.03 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=67.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+.....++.++|||||||+++||+| |+.|+......+ + ......+. .+. .+......+
T Consensus 170 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~---~----~~~~~~~~-----~~~---~~~~~~~~~ 234 (263)
T cd05052 170 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---V----YELLEKGY-----RME---RPEGCPPKV 234 (263)
T ss_pred ccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---H----HHHHHCCC-----CCC---CCCCCCHHH
Confidence 6999999999999999999999999999999 888876533221 1 11122111 011 112233567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+|++.+|++||+|.+++++|+..
T Consensus 235 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 235 YELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred HHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 7899999999999999999999999753
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=143.51 Aligned_cols=91 Identities=23% Similarity=0.389 Sum_probs=67.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|||||++..+.++.++|||||||+++||+| |+.|+......+ ..+++ .++... ..+......+
T Consensus 186 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~---~~~~~----~~~~~~--------~~~~~~~~~~ 250 (277)
T cd05062 186 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQ---VLRFV----MEGGLL--------DKPDNCPDML 250 (277)
T ss_pred hhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHHH----HcCCcC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 678876543321 22211 111111 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||++.|++++|++
T Consensus 251 ~~li~~~l~~~p~~Rps~~e~l~~l~~ 277 (277)
T cd05062 251 FELMRMCWQYNPKMRPSFLEIISSIKE 277 (277)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence 889999999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-13 Score=140.11 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=68.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.++|||||||+++|++| |+.|+......+ +.+. ++++.... .+......
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~----i~~~~~~~--------~~~~~~~~ 226 (257)
T cd05116 162 VKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE---VTQM----IESGERME--------CPQRCPPE 226 (257)
T ss_pred ccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HHCCCCCC--------CCCCCCHH
Confidence 36999999988899999999999999999998 999987543321 2222 22222111 11223345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+||+.+|++||+|.+|++.|++
T Consensus 227 l~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 227 MYDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred HHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 7789999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=142.15 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=67.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+...+.++.++|||||||+++||+| |+.|+......+ +..++. .+... +.... ....+
T Consensus 169 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~---~~~~~~----~~~~~----~~~~~----~~~~~ 233 (261)
T cd05072 169 KWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSD---VMSALQ----RGYRM----PRMEN----CPDEL 233 (261)
T ss_pred ecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHH---HHHHHH----cCCCC----CCCCC----CCHHH
Confidence 5999999999999999999999999999999 899986543221 222221 11111 11111 23457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||+|.++.++|+.
T Consensus 234 ~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 234 YDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 789999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-13 Score=145.50 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=71.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.|+|||||||+++||+| |+.|+......+ ..+ ....+...+ .+..+...
T Consensus 189 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~~----~~~~~~~~~--------~~~~~~~~ 253 (291)
T cd05094 189 IRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE---VIE----CITQGRVLE--------RPRVCPKE 253 (291)
T ss_pred eeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH----HHhCCCCCC--------CCccCCHH
Confidence 35999999999999999999999999999999 999986544322 111 122222211 11223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|++||+|.+|+++|+....
T Consensus 254 ~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~ 284 (291)
T cd05094 254 VYDIMLGCWQREPQQRLNIKEIYKILHALGK 284 (291)
T ss_pred HHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence 7899999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-13 Score=145.32 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=68.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++..+.++.++||||||++++||+| |..|+...... .+.+. +.++... ..+..+...
T Consensus 190 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~---~~~~~----i~~~~~~--------~~~~~~~~~ 254 (283)
T cd05091 190 IRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ---DVIEM----IRNRQVL--------PCPDDCPAW 254 (283)
T ss_pred ccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH---HHHHH----HHcCCcC--------CCCCCCCHH
Confidence 36999999999999999999999999999998 77787654322 12211 2222211 122234456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++..||+.+|++||+|.+|++.|+.
T Consensus 255 ~~~li~~cl~~~p~~RP~~~~i~~~l~~ 282 (283)
T cd05091 255 VYTLMLECWNEFPSRRPRFKDIHSRLRT 282 (283)
T ss_pred HHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence 7889999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-13 Score=140.95 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=69.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.++||||||++++||++ |..|+...... .+.+++. .+... ..+......
T Consensus 179 ~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~---~~~~~~~----~~~~~--------~~~~~~~~~ 243 (273)
T cd05035 179 VKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENH---EIYDYLR----HGNRL--------KQPEDCLDE 243 (273)
T ss_pred ccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHHH----cCCCC--------CCCcCCCHH
Confidence 36999999999999999999999999999999 88887654322 2222222 11111 112234457
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..|++.+|.+||+|.||++.|+..
T Consensus 244 ~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 244 LYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 88899999999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-13 Score=139.11 Aligned_cols=92 Identities=23% Similarity=0.351 Sum_probs=70.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++|||||||+++|++| |+.|+...... .+..++.. +... ..+......+
T Consensus 163 ~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~---~~~~~~~~----~~~~--------~~~~~~~~~l 227 (257)
T cd05060 163 KWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA---EVIAMLES----GERL--------PRPEECPQEI 227 (257)
T ss_pred cccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH---HHHHHHHc----CCcC--------CCCCCCCHHH
Confidence 5999999999999999999999999999998 99998754432 23333321 1111 1112233567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+|++.+|++||++.+|++.|++.
T Consensus 228 ~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 228 YSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred HHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 7899999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-13 Score=142.87 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=68.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+...+.++.++||||||++++|++| |+.|+......+ ...++. .+.. + ..+..+...+
T Consensus 169 ~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~---~~~~~~----~~~~-----~---~~~~~~~~~~ 233 (261)
T cd05148 169 KWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHE---VYDQIT----AGYR-----M---PCPAKCPQEI 233 (261)
T ss_pred EecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHH---HHHHHH----hCCc-----C---CCCCCCCHHH
Confidence 5999999999999999999999999999999 888886543221 222222 1100 0 1122334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||||.++.+.|+.
T Consensus 234 ~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 234 YKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 789999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-13 Score=155.80 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=75.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||.+....||.|||||||||+||||+| |..||....... .+ .+.+++|... +.|..|..+
T Consensus 485 ~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~--~l----~~~l~~G~r~--------~~P~~c~~e 550 (609)
T KOG0200|consen 485 VKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTE--EL----LEFLKEGNRM--------EQPEHCSDE 550 (609)
T ss_pred eeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHH--HH----HHHHhcCCCC--------CCCCCCCHH
Confidence 45999999999999999999999999999999 889986533121 12 2344555433 235567778
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
++.+|..||+.+|++||++.+.++.++..
T Consensus 551 iY~iM~~CW~~~p~~RP~F~~~~~~~~~~ 579 (609)
T KOG0200|consen 551 IYDLMKSCWNADPEDRPTFSECVEFFEKH 579 (609)
T ss_pred HHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999874
|
|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-13 Score=139.50 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=69.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+..++.++|||||||++|||+||+.|+..... ...++.... ..+. .+.. ........+
T Consensus 170 ~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~----~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~ 237 (267)
T cd08228 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM----NLFSLCQKI-EQCD-----YPPL--PTEHYSEKL 237 (267)
T ss_pred ccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccc----cHHHHHHHH-hcCC-----CCCC--ChhhcCHHH
Confidence 469999999998999999999999999999999999754321 112222221 1111 1111 112233567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+||+.+|++||++.+|++.|++.
T Consensus 238 ~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 238 RELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred HHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 8889999999999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-13 Score=143.45 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=70.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+..+..++.++||||||++++||+| |+.|+......+ +.++ ...+.. .. .+......
T Consensus 193 ~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~----~~~~~~-----~~---~~~~~~~~ 257 (290)
T cd05045 193 VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER---LFNL----LKTGYR-----ME---RPENCSEE 257 (290)
T ss_pred ccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHH----HhCCCC-----CC---CCCCCCHH
Confidence 36999999999999999999999999999999 998886543222 2222 222110 11 11223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..|++.+|++||+|.|+++.|++..
T Consensus 258 ~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 258 MYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred HHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 778999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-13 Score=141.62 Aligned_cols=90 Identities=18% Similarity=0.329 Sum_probs=62.2
Q ss_pred ccccchhhhhcCC--CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGH--LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~--~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+|+|||++.... ++.++|||||||++|||++|+.|+....... ...|...... ..+. .+.....
T Consensus 173 ~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~---~~~~~~~~~~-------~~~~---~~~~~~~ 239 (268)
T cd06624 173 LQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ---AAMFKVGMFK-------IHPE---IPESLSA 239 (268)
T ss_pred ccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh---hhHhhhhhhc-------cCCC---CCcccCH
Confidence 3699999987644 8899999999999999999999986432211 1111111111 0111 1222334
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++.+|++.+|.+||+|.||+.
T Consensus 240 ~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 240 EAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred HHHHHHHHHcCCCchhCCCHHHHHh
Confidence 5778899999999999999999875
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-13 Score=139.00 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..++.++.++|||||||+++||+||+.|+....... ...+ ...+... ..+......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~----~~~~~~~--------~~~~~~~~~~ 229 (256)
T cd08529 165 PYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA---LILK----IIRGVFP--------PVSQMYSQQL 229 (256)
T ss_pred ccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH---HHHH----HHcCCCC--------CCccccCHHH
Confidence 56999999999999999999999999999999999987544211 1111 1111111 1111234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+||+.+|++||+|.++++
T Consensus 230 ~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 230 AQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred HHHHHHHccCCcccCcCHHHHhh
Confidence 88999999999999999999975
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-13 Score=140.07 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=69.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh--CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS--GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt--g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+|||||+...+.++.++|||||||+++||++ |..|+..... ..+..++...++........+ .+.....+
T Consensus 197 ~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 268 (296)
T cd05051 197 RWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD---QQVIENAGHFFRDDGRQIYLP-----RPPNCPKD 268 (296)
T ss_pred eecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh---HHHHHHHHhccccccccccCC-----CccCCCHH
Confidence 6999999999999999999999999999998 6667654332 223333333332222111111 11223357
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++..|++.+|.+||+|.||++.|+
T Consensus 269 l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 269 IYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred HHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 889999999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-14 Score=152.12 Aligned_cols=171 Identities=26% Similarity=0.349 Sum_probs=84.8
Q ss_pred CCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
-...||+.|++. .+|..++.+..|+.|.|..|.+ ..+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 334445555544 4444444444555555554444 234444455555555555555544 3444444433 44455555
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|+++ .+|..++.+..|..|+.+.|.+... +..++.+.+|+.|++..|++. .+|..+. .-.|..||+|+|+++ .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence 5554 4444444444555555544443322 223444445555555555554 3344444 234555666666665 466
Q ss_pred ccccCCCCCCEEEccCCcCC
Q 004413 184 RTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~ 203 (755)
-.|..|..|++|-|.+|.|.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 66666666666666666665
|
|
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-13 Score=140.41 Aligned_cols=90 Identities=27% Similarity=0.415 Sum_probs=67.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++.++.++.|+|||||||+++||+| |+.|++.....+ +.+. ...... . ..+......+
T Consensus 186 ~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~---~~~~---~~~~~~-~--------~~~~~~~~~~ 250 (277)
T cd05036 186 KWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE---VMEF---VTGGGR-L--------DPPKGCPGPV 250 (277)
T ss_pred hhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH---HHcCCc-C--------CCCCCCCHHH
Confidence 5999999999999999999999999999997 999987544322 1111 111111 0 1122234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++..|++.+|++||++.+|++.|+
T Consensus 251 ~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 251 YRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 88999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-13 Score=143.18 Aligned_cols=95 Identities=24% Similarity=0.338 Sum_probs=70.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++....++.|+|||||||+++||+| |+.|+......+ +.+ ....+.... . +......+
T Consensus 187 ~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~---~~~----~i~~~~~~~-----~---~~~~~~~l 251 (288)
T cd05093 187 RWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE----CITQGRVLQ-----R---PRTCPKEV 251 (288)
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH----HHHcCCcCC-----C---CCCCCHHH
Confidence 6999999999999999999999999999999 888876543322 111 122222111 1 11123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..|++.+|.+||+|.+|.+.|+.....
T Consensus 252 ~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~ 282 (288)
T cd05093 252 YDLMLGCWQREPHMRLNIKEIHSLLQNLAKA 282 (288)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999876543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-13 Score=140.94 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=69.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+.....++.|+|||||||++||+++ |..|+......+ + ......+.. ...+..+...+
T Consensus 199 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~----~~~~~~~~~--------~~~~~~~~~~~ 263 (293)
T cd05053 199 KWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE---L----FKLLKEGYR--------MEKPQNCTQEL 263 (293)
T ss_pred cccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH---H----HHHHHcCCc--------CCCCCCCCHHH
Confidence 5999999999999999999999999999998 888876543222 1 111221111 11122334568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
.+++.+|++.+|++||||.||++.|+...
T Consensus 264 ~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 264 YHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 88999999999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-13 Score=139.95 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=70.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||....+.++.++|||||||++||++| |+.|++..... .+..++. .+.... .+......+
T Consensus 176 ~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~---~~~~~~~----~~~~~~--------~~~~~~~~~ 240 (279)
T cd05109 176 KWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR---EIPDLLE----KGERLP--------QPPICTIDV 240 (279)
T ss_pred hhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH---HHHHHHH----CCCcCC--------CCccCCHHH
Confidence 5999999999999999999999999999999 88888654322 2233222 111110 111234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||++.+++..|+.....
T Consensus 241 ~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~ 271 (279)
T cd05109 241 YMIMVKCWMIDSECRPRFRELVDEFSRMARD 271 (279)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence 7899999999999999999999999876544
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-13 Score=136.63 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=67.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+..++.++.++|||||||+++|++| |+.|+....... .. .....+... ..+......
T Consensus 158 ~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~ 222 (250)
T cd05085 158 IKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQ---AR----EQVEKGYRM--------SCPQKCPDD 222 (250)
T ss_pred ccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHH
Confidence 35999999999999999999999999999999 898986543221 11 111211111 111223457
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++..|++.+|++||+|.|++++|.
T Consensus 223 ~~~li~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 223 VYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHhc
Confidence 888999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-13 Score=137.41 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=67.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+.....++.++||||||++++||+| |+.|+..... ..+..++. .+.... .+..+...
T Consensus 163 ~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~---~~~~~~~~----~~~~~~--------~~~~~~~~ 227 (256)
T cd05082 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL---KDVVPRVE----KGYKMD--------APDGCPPV 227 (256)
T ss_pred eeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHHh----cCCCCC--------CCCCCCHH
Confidence 36999999999999999999999999999998 8888764322 11222221 111111 11223446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+|++.+|++||+|.++++.|+.
T Consensus 228 ~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 228 VYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 7788999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-13 Score=140.89 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=67.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhH-HHH--HHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEK-IYL--LEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||+..+..++.++|||||||+++||+||+.|+........ ... .++.... .++.. .+ ..+.
T Consensus 197 ~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~----~~~~ 265 (294)
T PHA02882 197 LYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRL-HEGKI------KI----KNAN 265 (294)
T ss_pred ccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHh-hhhhh------cc----CCCC
Confidence 459999999999999999999999999999999999976522211 111 1121111 11111 01 1224
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
..+.+++..|++.+|++||++.++.+.++
T Consensus 266 ~~~~~~~~~~~~~~~~~rp~~~~l~~~~~ 294 (294)
T PHA02882 266 KFIYDFIECVTKLSYEEKPDYDALIKIFD 294 (294)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence 56788999999999999999999998763
|
|
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-13 Score=140.87 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=68.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.|+|||||||+++||++ |..|+......+ +.. ....+.... .+.....++
T Consensus 197 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~------~~~-~~~~~~~~~--------~~~~~~~~l 261 (288)
T cd05050 197 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE------VIY-YVRDGNVLS--------CPDNCPLEL 261 (288)
T ss_pred hhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH------HHH-HHhcCCCCC--------CCCCCCHHH
Confidence 5999999999999999999999999999998 888876443221 121 222222211 122234568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||+|.|+++.|++
T Consensus 262 ~~li~~~l~~~p~~Rpt~~el~~~l~~ 288 (288)
T cd05050 262 YNLMRLCWSKLPSDRPSFASINRILQR 288 (288)
T ss_pred HHHHHHHcccCcccCCCHHHHHHHhhC
Confidence 889999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-13 Score=141.99 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=94.4
Q ss_pred HHHHHhcCCCCCCcccCCCCcceeeceeeeeecc---------------------ccccchhhhhcCCCCccceeeeehh
Q 004413 535 ELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNF---------------------HGYLAPEYAMRGHLTEKADVFSFGV 593 (755)
Q Consensus 535 el~~at~~f~~~~~lg~g~fg~Vy~g~~~~i~df---------------------~gy~aPE~~~~~~~t~ksDVysfGv 593 (755)
.+.-.+++|...|+|-.|.| ..+|||| ++|||||.+.-+++|++||||+|||
T Consensus 655 s~nfVHrd~a~rNcLv~~e~-------~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgv 727 (807)
T KOG1094|consen 655 SLNFVHRDLATRNCLVDGEF-------TIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGV 727 (807)
T ss_pred hhchhhccccccceeecCcc-------cEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHH
Confidence 34445677777777766655 4456666 5899999999999999999999999
Q ss_pred eeehhhh--CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 594 AALEIIS--GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 594 vllEllt--g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.|||+++ ..+||....++ ..++-.....+.+....+ ...|.-|...+++++++||..+-++||++++++.
T Consensus 728 TlwE~~~~C~e~Py~~lt~e---~vven~~~~~~~~~~~~~-----l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~ 799 (807)
T KOG1094|consen 728 TLWEVFMLCREQPYSQLTDE---QVVENAGEFFRDQGRQVV-----LSRPPACPQGLYELMLRCWRRESEQRPSFEQLHL 799 (807)
T ss_pred HHHHHHHHHhhCchhhhhHH---HHHHhhhhhcCCCCccee-----ccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHH
Confidence 9999876 78898765443 244444444443322211 1235567788999999999999999999999999
Q ss_pred HHhcc
Q 004413 672 MLAGD 676 (755)
Q Consensus 672 ~L~~~ 676 (755)
-|+..
T Consensus 800 ~lq~~ 804 (807)
T KOG1094|consen 800 FLQED 804 (807)
T ss_pred HHHHh
Confidence 88754
|
|
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-13 Score=140.77 Aligned_cols=91 Identities=24% Similarity=0.319 Sum_probs=68.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++..+.++.++|||||||+++|++| |+.|+......+ +.+++. .+.... .+......
T Consensus 188 ~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~---~~~~~~----~~~~~~--------~~~~~~~~ 252 (280)
T cd05049 188 IRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEE---VIECIT----QGRLLQ--------RPRTCPSE 252 (280)
T ss_pred ceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHHH----cCCcCC--------CCCCCCHH
Confidence 35999999999999999999999999999999 999986543322 222221 222111 11123356
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++..||+.+|++||++.||+++|+
T Consensus 253 ~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 253 VYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred HHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 788999999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-13 Score=138.83 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=66.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCc-CCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRA-NSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.|+|||||||+++||+||+. |+..... ..+..++. .+.. +. .+......
T Consensus 166 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~---~~~~~~~~----~~~~-----~~---~~~~~~~~ 230 (262)
T cd05058 166 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS---FDITVYLL----QGRR-----LL---QPEYCPDP 230 (262)
T ss_pred ccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH---HHHHHHHh----cCCC-----CC---CCCcCCHH
Confidence 35999999999999999999999999999999654 4543221 22232221 1110 00 01112346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|++||++.||++.|+..
T Consensus 231 ~~~li~~cl~~~p~~Rp~~~~il~~l~~~ 259 (262)
T cd05058 231 LYEVMLSCWHPKPEMRPTFSELVSRIEQI 259 (262)
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 78899999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-13 Score=154.49 Aligned_cols=87 Identities=24% Similarity=0.307 Sum_probs=64.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
+|||||++....++.|+|||||||++|||+||+.|+...... +++.... .+.. ++ .+......+.
T Consensus 210 ~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~------~~~~~~~-~~~~----~~----~~~~~~~~l~ 274 (496)
T PTZ00283 210 YYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENME------EVMHKTL-AGRY----DP----LPPSISPEMQ 274 (496)
T ss_pred ceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHh-cCCC----CC----CCCCCCHHHH
Confidence 599999999999999999999999999999999998754322 2222221 1211 11 1222334677
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++..|++.+|.+||++.+++.
T Consensus 275 ~li~~~L~~dP~~RPs~~ell~ 296 (496)
T PTZ00283 275 EIVTALLSSDPKRRPSSSKLLN 296 (496)
T ss_pred HHHHHHcccChhhCcCHHHHHh
Confidence 8999999999999999999975
|
|
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-13 Score=140.36 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=61.5
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++. ...++.++|||||||++|||++|+.|++......... .... .......+ ..
T Consensus 175 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~------~~~~-~~~~~~~~-------~~ 240 (272)
T cd06637 175 PYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF------LIPR-NPAPRLKS-------KK 240 (272)
T ss_pred ccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHH------HHhc-CCCCCCCC-------CC
Confidence 3699999986 3468899999999999999999999986543222111 0011 11111111 11
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++.+|++.+|.+||++.||++
T Consensus 241 ~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 241 WSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred cCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 2345778999999999999999999874
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-13 Score=137.61 Aligned_cols=91 Identities=27% Similarity=0.447 Sum_probs=67.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+....+++.++|||||||+++|++| |+.|+......+ ..++. ..+... ..+......+
T Consensus 168 ~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~~~----~~~~~~--------~~~~~~~~~~ 232 (260)
T cd05070 168 KWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNRE---VLEQV----ERGYRM--------PCPQDCPISL 232 (260)
T ss_pred cccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHH---HHHHH----HcCCCC--------CCCCcCCHHH
Confidence 5999999999999999999999999999999 888886543221 22221 111100 1122233468
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||||.++.+.|+.
T Consensus 233 ~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 233 HELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 889999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-13 Score=140.73 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=69.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++|||||||++||++| |+.|+...... .+.+++ ..+.... .+..+...+
T Consensus 176 ~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~---~~~~~~----~~~~~~~--------~~~~~~~~~ 240 (303)
T cd05110 176 KWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTR---EIPDLL----EKGERLP--------QPPICTIDV 240 (303)
T ss_pred ccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH----HCCCCCC--------CCCCCCHHH
Confidence 6999999999999999999999999999998 88998654322 222322 2111110 011233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
..++..||..+|++||+|.+++++|+....
T Consensus 241 ~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~ 270 (303)
T cd05110 241 YMVMVKCWMIDADSRPKFKELAAEFSRMAR 270 (303)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 889999999999999999999999987543
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-13 Score=139.06 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=70.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.++|||||||++||++| |+.|++..... .+..++. .+.. ... +..+...
T Consensus 183 ~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~---~~~~~~~----~~~~-----~~~---~~~~~~~ 247 (280)
T cd05043 183 VKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF---EMAAYLK----DGYR-----LAQ---PINCPDE 247 (280)
T ss_pred hhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH---HHHHHHH----cCCC-----CCC---CCcCCHH
Confidence 35999999998999999999999999999999 99998754332 2333222 1110 000 1122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++.+||+.+|++||++.+|+++|+...
T Consensus 248 ~~~li~~~l~~~p~~Rps~~~~~~~l~~~~ 277 (280)
T cd05043 248 LFAVMACCWALDPEERPSFSQLVQCLTDFH 277 (280)
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 788999999999999999999999998654
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-13 Score=137.81 Aligned_cols=90 Identities=26% Similarity=0.301 Sum_probs=66.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.++|||||||+++|+++ |..|+....... .......+... ..+......+
T Consensus 161 ~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~-------~~~~~~~~~~~--------~~~~~~~~~~ 225 (252)
T cd05084 161 KWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ-------TREAIEQGVRL--------PCPELCPDAV 225 (252)
T ss_pred eecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH-------HHHHHHcCCCC--------CCcccCCHHH
Confidence 4999999999999999999999999999998 888876543322 11111111000 1122234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++..|++.+|++||+|.+|.++|+
T Consensus 226 ~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 226 YRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 88999999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.9e-13 Score=139.62 Aligned_cols=91 Identities=23% Similarity=0.338 Sum_probs=66.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.|+|||||||+++||+| |+.|+......+. ... ...+... ..+......+
T Consensus 189 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~---~~~----~~~~~~~--------~~~~~~~~~~ 253 (280)
T cd05092 189 RWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEA---IEC----ITQGREL--------ERPRTCPPEV 253 (280)
T ss_pred cccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHH---HHH----HHcCccC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 8888765433221 111 1111111 0111223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..||+.+|.+||++.||.+.|+.
T Consensus 254 ~~li~~cl~~~P~~Rp~~~~l~~~l~~ 280 (280)
T cd05092 254 YAIMQGCWQREPQQRMVIKDIHSRLQA 280 (280)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHHhC
Confidence 789999999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=135.63 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=66.8
Q ss_pred ccccchhhhhcCC-C-----CccceeeeehheeehhhhCCcCCCCC--------chhhHHH--HHHHHHHHhhcCccccc
Q 004413 569 HGYLAPEYAMRGH-L-----TEKADVFSFGVAALEIISGRANSDNS--------LDMEKIY--LLEWAWNLHENNQSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~-----t~ksDVysfGvvllElltg~~p~~~~--------~~~~~~~--l~~~~~~~~~~~~~~~~ 632 (755)
.+|||||++.+.. + -.+.||||.|.|||||+++....+.. +..+..+ -.+-++..+-. +-
T Consensus 382 ~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~----kK 457 (534)
T KOG3653|consen 382 RRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVR----KK 457 (534)
T ss_pred hhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHh----hc
Confidence 4699999987532 2 24689999999999999976654311 1101000 01112222211 11
Q ss_pred cCCCCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 633 VDPTLTEF--NDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 633 ~d~~l~~~--~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
..|.+.+. ....+.-+.+....||..||+.|-|..-|.+++.......
T Consensus 458 ~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~ 507 (534)
T KOG3653|consen 458 QRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLW 507 (534)
T ss_pred cCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccC
Confidence 22333221 1144667888999999999999999999998887765543
|
|
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-13 Score=140.38 Aligned_cols=91 Identities=26% Similarity=0.412 Sum_probs=66.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+..++.++.++|||||||+++||+| |+.|+....... +.+. ...+... ..+.....++
T Consensus 191 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~---~~~~----~~~~~~~--------~~~~~~~~~~ 255 (283)
T cd05090 191 RWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQE---VIEM----VRKRQLL--------PCSEDCPPRM 255 (283)
T ss_pred eecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH----HHcCCcC--------CCCCCCCHHH
Confidence 5999999998999999999999999999999 888876543221 2221 2211111 1112233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|.+||++.+|.++|..
T Consensus 256 ~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 256 YSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 788899999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-12 Score=137.37 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=65.2
Q ss_pred ccccchhhhhcC--CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRG--HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~--~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.-|||||++..| -|...+|||||||.+.||.|||+|+........ +. ++-|-. -+. ...|.+-..
T Consensus 740 LQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqA---AM-----FkVGmy--KvH---P~iPeelsa 806 (1226)
T KOG4279|consen 740 LQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQA---AM-----FKVGMY--KVH---PPIPEELSA 806 (1226)
T ss_pred hhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhH---hh-----hhhcce--ecC---CCCcHHHHH
Confidence 459999999765 588999999999999999999999876533221 11 111100 012 234555556
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.-...++|..++|.+||+++++++
T Consensus 807 eak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 807 EAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred HHHHHHHHHcCCCcccCccHHHhcc
Confidence 6777899999999999999999874
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-13 Score=127.55 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=68.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH--H
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA--L 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~--~ 646 (755)
..|||||++.+..++.|+|||||||++|||+||+.|+....... ..+..+.... .. .++.-...+.... .
T Consensus 68 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~-~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~ 139 (176)
T smart00750 68 PYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELS-AILEILLNGM-PA------DDPRDRSNLESVSAAR 139 (176)
T ss_pred ccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhc-HHHHHHHHHh-cc------CCccccccHHHHHhhh
Confidence 68999999999999999999999999999999999986432211 1111111111 10 0111000111111 2
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+.+++.+|++.+|++||++.|+++.+..
T Consensus 140 ~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~ 168 (176)
T smart00750 140 SFADFMRVCASRLPQRREAANHYLAHCRA 168 (176)
T ss_pred hHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 58889999999999999999999987764
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-13 Score=136.18 Aligned_cols=91 Identities=26% Similarity=0.382 Sum_probs=67.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.++|||||||+++|++| |+.|+......+ +... +..+.... .+.....++
T Consensus 168 ~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---~~~~----~~~~~~~~--------~~~~~~~~~ 232 (260)
T cd05067 168 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPE---VIQN----LERGYRMP--------RPDNCPEEL 232 (260)
T ss_pred cccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHH---HHHH----HHcCCCCC--------CCCCCCHHH
Confidence 5999999999999999999999999999999 999987543322 1111 11111111 111223468
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||++.++...|+.
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~l~~~l~~ 259 (260)
T cd05067 233 YELMRLCWKEKPEERPTFEYLRSVLED 259 (260)
T ss_pred HHHHHHHccCChhhCCCHHHHHHHhhc
Confidence 889999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-13 Score=138.39 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=66.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||+.....++.++|||||||++||++| |+.|++.....+ .... ...+ ..... +......+
T Consensus 166 ~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~----~~~~-----~~~~~---~~~~~~~~ 230 (256)
T cd05059 166 KWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE---VVES----VSAG-----YRLYR---PKLAPTEV 230 (256)
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH---HHHH----HHcC-----CcCCC---CCCCCHHH
Confidence 5999999999999999999999999999999 788886543322 1111 1111 11111 11234468
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+||+.+|++||+|.||+++|.
T Consensus 231 ~~li~~cl~~~p~~Rpt~~~~l~~l~ 256 (256)
T cd05059 231 YTIMYSCWHEKPEDRPAFKKLLSQLT 256 (256)
T ss_pred HHHHHHHhcCChhhCcCHHHHHHHhC
Confidence 88999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-13 Score=139.28 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=70.7
Q ss_pred cccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 568 FHGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 568 f~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
...|+|||++.+ ..++.|+|||||||++|||+||+.|+......+ +... ....+. . +.+ +..+.
T Consensus 183 ~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~---~~~~---i~~~~~-~----~~~---~~~~~ 248 (283)
T PHA02988 183 FMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKE---IYDL---IINKNN-S----LKL---PLDCP 248 (283)
T ss_pred cccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHH---HHHH---HHhcCC-C----CCC---CCcCc
Confidence 367999999976 789999999999999999999999998654322 2111 111111 1 111 12234
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
..+.+++..||+.+|++||||.||++.|+...
T Consensus 249 ~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~ 280 (283)
T PHA02988 249 LEIKCIVEACTSHDSIKRPNIKEILYNLSLYK 280 (283)
T ss_pred HHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 46778999999999999999999999998643
|
|
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-12 Score=136.61 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=68.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++||||||+++||+++ |+.|+......+ + ......+.... .+......+
T Consensus 179 ~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~----~~~~~~~~~~~--------~~~~~~~~~ 243 (272)
T cd05075 179 KWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSE---I----YDYLRQGNRLK--------QPPDCLDGL 243 (272)
T ss_pred ccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHH---H----HHHHHcCCCCC--------CCCCCCHHH
Confidence 5999999999999999999999999999999 788876433221 1 22222322111 111233457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++.+||+.+|++||||.++++.|+..
T Consensus 244 ~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 244 YSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 8899999999999999999999999763
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=135.40 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=69.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.++|||||||+++|+++ |+.|+......+ +.. .+..+... ..+..+...
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~ 226 (257)
T cd05115 162 LKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPE---VMS----FIEQGKRL--------DCPAECPPE 226 (257)
T ss_pred cccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHH---HHH----HHHCCCCC--------CCCCCCCHH
Confidence 36999999998899999999999999999997 999987654322 111 22222111 112233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++..||+.+|++||+|.+|.+.|+.
T Consensus 227 l~~li~~c~~~~~~~Rp~~~~i~~~l~~ 254 (257)
T cd05115 227 MYALMKDCWIYKWEDRPNFAKVEERMRT 254 (257)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHhh
Confidence 7789999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-12 Score=137.44 Aligned_cols=92 Identities=26% Similarity=0.457 Sum_probs=69.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||....+.++.++|||||||+++|++| |+.|+......+ +.++.. .+... ..+......
T Consensus 185 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~~~~~----~~~~~--------~~~~~~~~~ 249 (277)
T cd05032 185 VRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE---VLKFVI----DGGHL--------DLPENCPDK 249 (277)
T ss_pred ccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH---HHHHHh----cCCCC--------CCCCCCCHH
Confidence 46999999999999999999999999999999 888886543322 222221 22111 112223557
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++..|++.+|++|||+.+++..|+.
T Consensus 250 ~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 277 (277)
T cd05032 250 LLELMRMCWQYNPKMRPTFLEIVSSLKD 277 (277)
T ss_pred HHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence 8899999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-13 Score=137.36 Aligned_cols=91 Identities=27% Similarity=0.412 Sum_probs=67.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+...+.++.++|||||||+++|+++ |+.|+......+ +. ... .++. ...++++ ....
T Consensus 165 ~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~~---~~~-~~~~--~~~~~~~------~~~~ 229 (256)
T cd05112 165 VKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSE---VV---ETI-NAGF--RLYKPRL------ASQS 229 (256)
T ss_pred hhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHH---HH---HHH-hCCC--CCCCCCC------CCHH
Confidence 36999999999999999999999999999998 899886543221 11 111 1111 1112222 2356
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++.+||+.+|++||+|.||+++|.
T Consensus 230 ~~~l~~~~l~~~p~~Rp~~~~~l~~l~ 256 (256)
T cd05112 230 VYELMQHCWKERPEDRPSFSLLLHQLA 256 (256)
T ss_pred HHHHHHHHcccChhhCCCHHHHHHhhC
Confidence 888999999999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-13 Score=137.39 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=68.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.++|||||||+++|+++ |+.|+...... ...+++..... + ..+.++...+
T Consensus 176 ~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~---~~~~~i~~~~~-----------~-~~~~~~~~~~ 240 (269)
T cd05065 176 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ---DVINAIEQDYR-----------L-PPPMDCPTAL 240 (269)
T ss_pred eecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH---HHHHHHHcCCc-----------C-CCcccCCHHH
Confidence 5999999999999999999999999999887 99998654322 23333321110 0 0112234457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..||+.+|++||+|.+|+.+|+..
T Consensus 241 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 268 (269)
T cd05065 241 HQLMLDCWQKDRNARPKFGQIVSTLDKM 268 (269)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 7899999999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-13 Score=137.15 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=66.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+...+.++.++|||||||++||+++|+.|+....... ..... .++...... . ......+
T Consensus 177 ~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~------~~~~~-~~~~~~~~~----~---~~~~~~l 242 (269)
T cd08528 177 ILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS------LATKI-VEAVYEPLP----E---GMYSEDV 242 (269)
T ss_pred ccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH------HHHHH-hhccCCcCC----c---ccCCHHH
Confidence 46999999999999999999999999999999999986433211 11111 111111110 1 0122456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+||+.+|++||+|.||+.+++
T Consensus 243 ~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 243 TDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred HHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 77888999999999999999999886
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=136.36 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=68.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+.....++.++||||||++++||++|+.|+...... ..++.... . ....+.+. .......+
T Consensus 170 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~-~-----~~~~~~~~--~~~~~~~~ 237 (267)
T cd08229 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCKKI-E-----QCDYPPLP--SDHYSEEL 237 (267)
T ss_pred cCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch----HHHHhhhh-h-----cCCCCCCC--cccccHHH
Confidence 4699999999999999999999999999999999998643211 11111111 1 11111111 11233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..||+.+|++||||.+|++++++.
T Consensus 238 ~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 238 RQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred HHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 7888899999999999999999998763
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-12 Score=139.10 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=37.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+....
T Consensus 166 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~ 206 (331)
T cd06649 166 RSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPD 206 (331)
T ss_pred cCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 47999999999999999999999999999999999986543
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=138.14 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh----cCcc------ccccCCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE----NNQS------LGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~----~~~~------~~~~d~~l~ 638 (755)
..|+|||.+....++.++|||||||+++||+||+.|+......+. ...+..... .... ...+.+.-.
T Consensus 173 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T cd07862 173 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ---LGKILDVIGLPGEEDWPRDVALPRQAFHSKSA 249 (290)
T ss_pred ccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHH---HHHHHHHhCCCChhhchhhhcccchhccCCCC
Confidence 469999999999999999999999999999999999876543221 111111110 0000 001111100
Q ss_pred ----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 ----EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ----~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.........+.++..+|++.+|++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~ 286 (290)
T cd07862 250 QPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 286 (290)
T ss_pred CCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence 000112234568999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-13 Score=137.29 Aligned_cols=90 Identities=20% Similarity=0.339 Sum_probs=66.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.|+|||||||+++||+| |+.|+......+ +.+.+ ..+... + . +......+
T Consensus 166 ~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~~~----~~~~~~----~-~---~~~~~~~~ 230 (256)
T cd05113 166 RWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE---TVEKV----SQGLRL----Y-R---PHLASEKV 230 (256)
T ss_pred hhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHHH----hcCCCC----C-C---CCCCCHHH
Confidence 5999999998999999999999999999999 999986543321 12111 111110 0 0 11123567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+||+.+|.+||++.+++..|+
T Consensus 231 ~~li~~cl~~~p~~Rp~~~~ll~~~~ 256 (256)
T cd05113 231 YAIMYSCWHEKAEERPTFQQLLSSIE 256 (256)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHhhC
Confidence 88999999999999999999998774
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-12 Score=135.76 Aligned_cols=91 Identities=25% Similarity=0.376 Sum_probs=68.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.++||||||++++|++| |+.|+......+. ......+... ..+.+....+
T Consensus 168 ~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~l 232 (262)
T cd05071 168 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYRM--------PCPPECPESL 232 (262)
T ss_pred eecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHH-------HHHHhcCCCC--------CCccccCHHH
Confidence 5999999999999999999999999999999 7778765432211 1111111100 1122344567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..|++.+|++||++.++.+.|+.
T Consensus 233 ~~li~~~l~~~p~~Rp~~~~~~~~l~~ 259 (262)
T cd05071 233 HDLMCQCWRKEPEERPTFEYLQAFLED 259 (262)
T ss_pred HHHHHHHccCCcccCCCHHHHHHHHHH
Confidence 899999999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-13 Score=139.23 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=62.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.+..++.++|||||||+++||+||+.|+......... +-+........ ..++......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~s~~~ 232 (285)
T cd05631 165 VGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKR---EEVDRRVKEDQ---------EEYSEKFSEDA 232 (285)
T ss_pred CCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhH---HHHHHHhhccc---------ccCCccCCHHH
Confidence 5799999999999999999999999999999999998754322110 11111111110 01111223356
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~~ 671 (755)
.+++..|++.+|.+||+ +.++.+
T Consensus 233 ~~li~~~l~~~P~~R~~~~~~~~~~~~~ 260 (285)
T cd05631 233 KSICRMLLTKNPKERLGCRGNGAAGVKQ 260 (285)
T ss_pred HHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence 77899999999999997 677664
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-12 Score=133.87 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH-HHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND-KEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~-~~~~~ 647 (755)
..|+|||+..+..++.++|||||||++||+++|+.|+.... ..+.++... ...+... ..+. .....
T Consensus 170 ~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~-~~~~~~~--------~~~~~~~~~~ 236 (267)
T cd08224 170 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK----MNLYSLCKK-IEKCDYP--------PLPADHYSEE 236 (267)
T ss_pred ccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC----ccHHHHHhh-hhcCCCC--------CCChhhcCHH
Confidence 46999999999999999999999999999999999975432 112222211 1111111 1111 23346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..|++.+|++||++.+|+++|+..
T Consensus 237 ~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 237 LRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 77899999999999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=138.78 Aligned_cols=95 Identities=25% Similarity=0.266 Sum_probs=68.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++|||||||+++|++| |+.|+......+ ..+. ...+... +.+......+
T Consensus 188 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~~----~~~~~~~--------~~~~~~~~~~ 252 (303)
T cd05088 188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYEK----LPQGYRL--------EKPLNCDDEV 252 (303)
T ss_pred cccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHH---HHHH----HhcCCcC--------CCCCCCCHHH
Confidence 5999999998899999999999999999998 999986443221 1111 1111000 0111123357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++.+|++.+|++||++.+++++|+.....
T Consensus 253 ~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~ 283 (303)
T cd05088 253 YDLMRQCWREKPYERPSFAQILVSLNRMLEE 283 (303)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999875443
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-13 Score=136.39 Aligned_cols=92 Identities=26% Similarity=0.354 Sum_probs=67.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+...+.++.++|||||||+++||++ |+.|+......+ +.+ ....+...+ + +......
T Consensus 161 ~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~~~----~~~~~~~~~---~-----~~~~~~~ 225 (254)
T cd05083 161 VKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKE---VKE----CVEKGYRME---P-----PEGCPAD 225 (254)
T ss_pred ceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHH---HHH----HHhCCCCCC---C-----CCcCCHH
Confidence 35999999999999999999999999999998 888876543222 111 112221111 1 1122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+|++.+|++||+|.+|+..|+.
T Consensus 226 ~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 226 VYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 7789999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-12 Score=139.01 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=59.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.+..++.++|||||||+++||+||+.|+......+ ...... .+.. .+.+ . ....+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~------~~~~i~-~~~~--~~~~---~----~~~~~ 223 (323)
T cd05575 160 PEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAE------MYDNIL-NKPL--RLKP---N----ISVSA 223 (323)
T ss_pred hhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHH------HHHHHH-cCCC--CCCC---C----CCHHH
Confidence 57999999999999999999999999999999999987543221 111111 1110 0111 1 13356
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.++...|++.+|.+||++.
T Consensus 224 ~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 224 RHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred HHHHHHHhhcCHHhCCCCC
Confidence 7788899999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-13 Score=139.49 Aligned_cols=93 Identities=28% Similarity=0.446 Sum_probs=68.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+..++.++.|+|||||||+++|+++ |+.|+......+ +.++ ...+.. ...+..+...+
T Consensus 186 ~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~---~~~~----~~~~~~--------~~~~~~~~~~~ 250 (288)
T cd05061 186 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQ---VLKF----VMDGGY--------LDQPDNCPERV 250 (288)
T ss_pred cccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HHcCCC--------CCCCCCCCHHH
Confidence 4999999999999999999999999999999 777876543222 1111 111111 11122234578
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
.+++.+|++.+|++||+|.++++.|+...
T Consensus 251 ~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 279 (288)
T cd05061 251 TDLMRMCWQFNPKMRPTFLEIVNLLKDDL 279 (288)
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence 88999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-13 Score=151.47 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=66.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHH---------HHHH--------Hhh-cCccc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLE---------WAWN--------LHE-NNQSL 630 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~---------~~~~--------~~~-~~~~~ 630 (755)
.+|||||++.+..++.++|||||||+++||+||+.|++.....+...+.. |... .+. .+.+.
T Consensus 309 ~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 388 (467)
T PTZ00284 309 RHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLR 388 (467)
T ss_pred ccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhccccc
Confidence 36999999999999999999999999999999999998655433222221 1110 000 00111
Q ss_pred cccCCCC-----CCCCH---HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 GLVDPTL-----TEFND---KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 ~~~d~~l-----~~~~~---~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...++.- ..... .+-..+.++...|++.||.+|||+.|+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~ 437 (467)
T PTZ00284 389 PCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT 437 (467)
T ss_pred ccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence 1111110 00000 01234678999999999999999999985
|
|
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-12 Score=136.81 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=60.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||++|+.|+......+ + ... +... .+.+ +......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~---~---~~~-i~~~------~~~~---~~~~~~~~ 223 (316)
T cd05592 160 PDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDE---L---FDS-ILND------RPHF---PRWISKEA 223 (316)
T ss_pred ccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHH---H---HHH-HHcC------CCCC---CCCCCHHH
Confidence 57999999999999999999999999999999999987543321 1 111 1111 1111 11122345
Q ss_pred HHHHHHhcccCCCCCCCHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRV 669 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v 669 (755)
.++...|++.+|.+||++.+.
T Consensus 224 ~~ll~~~l~~~P~~R~~~~~~ 244 (316)
T cd05592 224 KDCLSKLFERDPTKRLGVDGD 244 (316)
T ss_pred HHHHHHHccCCHHHcCCChHH
Confidence 678889999999999998643
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=132.59 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=63.1
Q ss_pred ccccchhhhhcC-------CCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCC
Q 004413 569 HGYLAPEYAMRG-------HLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEF 640 (755)
Q Consensus 569 ~gy~aPE~~~~~-------~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 640 (755)
..|+|||+.... .++.|+|||||||+++||++ |+.|+......+. ..+. . .+......++.+...
T Consensus 166 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~---~~~~---~-~~~~~~~~~~~~~~~ 238 (269)
T cd05087 166 LRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQV---LTYT---V-REQQLKLPKPRLKLP 238 (269)
T ss_pred ccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHH---HHHH---h-hcccCCCCCCccCCC
Confidence 359999988532 46889999999999999997 9999875443221 1111 1 111122333333211
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 641 NDKEALRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 641 ~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
....+.+++..|| .+|++||||.||++.|+
T Consensus 239 ---~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 239 ---LSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred ---CChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence 1224566778899 57999999999999885
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-12 Score=135.50 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH---------HHHhhcCccccccCCCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA---------WNLHENNQSLGLVDPTLTE 639 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~d~~l~~ 639 (755)
.+|+|||++.+..++.++|||||||+++||++|+.|+......+........ ..............+....
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (287)
T cd07848 165 RWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNH 244 (287)
T ss_pred cccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccC
Confidence 4699999999999999999999999999999999998754432221111111 1111111111111111100
Q ss_pred -------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 -------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 -------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.......+.++...|++.+|++|||+.|+++
T Consensus 245 ~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~ 283 (287)
T cd07848 245 PQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN 283 (287)
T ss_pred cccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 00112345788999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=127.18 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCC-HHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFN-DKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~ 647 (755)
+-||.||.++...|+.||||||.|++++||+.-+.|+... ++.+ ..+.++.|+...+ | .--...
T Consensus 192 PyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~------n~~~-L~~KI~qgd~~~~--------p~~~YS~~ 256 (375)
T KOG0591|consen 192 PYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD------NLLS-LCKKIEQGDYPPL--------PDEHYSTD 256 (375)
T ss_pred CcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc------cHHH-HHHHHHcCCCCCC--------cHHHhhhH
Confidence 5699999999999999999999999999999999998754 2222 2334455543222 2 223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+|+-.|+..+|+.||+....++.+..
T Consensus 257 l~~li~~ci~vd~~~RP~t~~~v~di~~ 284 (375)
T KOG0591|consen 257 LRELINMCIAVDPEQRPDTVPYVQDIQS 284 (375)
T ss_pred HHHHHHHHccCCcccCCCcchHHHHHHH
Confidence 7788899999999999986555555544
|
|
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-12 Score=135.16 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=68.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH--------HHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI--------YLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
.|+|||+.....++.++||||||++++||+||+.|+......... ............+.. . ..+
T Consensus 177 ~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 248 (284)
T cd05038 177 FWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGER-------L-PRP 248 (284)
T ss_pred cccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCc-------C-CCC
Confidence 499999999999999999999999999999999987543211100 001111111111110 0 112
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
..+..++.+++.+|++.+|++||+|.||+++|+..
T Consensus 249 ~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 249 PSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred ccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 23345788999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-12 Score=133.12 Aligned_cols=91 Identities=24% Similarity=0.399 Sum_probs=67.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.++|||||||+++|++| |+.|+....... +..+. ..+.... . +......+
T Consensus 168 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~---~~~~~----~~~~~~~----~----~~~~~~~~ 232 (260)
T cd05073 168 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE---VIRAL----ERGYRMP----R----PENCPEEL 232 (260)
T ss_pred cccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHH---HHHHH----hCCCCCC----C----cccCCHHH
Confidence 5999999999999999999999999999999 888886543221 22221 2221111 1 11223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||++.++.++|+.
T Consensus 233 ~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 233 YNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred HHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 788899999999999999999999974
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-12 Score=138.26 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+......+.. .+..|.. ..-.+............
T Consensus 162 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~s~~ 232 (333)
T cd05600 162 PDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKE---------TLQRPVYDDPRFNLSDE 232 (333)
T ss_pred ccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccc---------cccCCCCCccccccCHH
Confidence 5799999999999999999999999999999999999765433211 1111110 00011111000122345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+||++.++++
T Consensus 233 ~~~li~~~l~~~~~rr~s~~~ll~ 256 (333)
T cd05600 233 AWDLITKLINDPSRRFGSLEDIKN 256 (333)
T ss_pred HHHHHHHHhhChhhhcCCHHHHHh
Confidence 667888999999999999999985
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=134.46 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=62.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCC-cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGR-ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||++.+ ..++.++|||||||+++|+++|+ .|+......... . ..... ..+ +.....
T Consensus 168 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~------~-~~~~~-------~~~---~~~~~~ 230 (258)
T cd05078 168 IPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKL------Q-FYEDR-------HQL---PAPKWT 230 (258)
T ss_pred CCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHH------H-HHHcc-------ccC---CCCCcH
Confidence 57999999987 45899999999999999999985 554432221111 0 11110 011 111224
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+.+++..|++.+|++||||.++++.|+
T Consensus 231 ~~~~li~~~l~~~p~~Rps~~~il~~l~ 258 (258)
T cd05078 231 ELANLINQCMDYEPDFRPSFRAIIRDLN 258 (258)
T ss_pred HHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 5788999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-13 Score=139.14 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=65.8
Q ss_pred ccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhH---------HHHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEK---------IYLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 571 y~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
|+|||+..++.++.++|||||||+++||+||..+.......-. ..+..+.......+. ....+
T Consensus 177 y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 248 (284)
T cd05081 177 WYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNG--------RLPAP 248 (284)
T ss_pred eeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCC--------cCCCC
Confidence 9999999999999999999999999999998776432211000 000001111111110 00111
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
......+.+++..||+.+|++||||.||+++|+..
T Consensus 249 ~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~ 283 (284)
T cd05081 249 PGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI 283 (284)
T ss_pred CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence 22345688899999999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-12 Score=140.30 Aligned_cols=96 Identities=25% Similarity=0.374 Sum_probs=70.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.+..++.|+|||||||+||||+| |+.|+......+. .......+... .. +......
T Consensus 240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~------~~~~~~~~~~~-----~~---~~~~~~~ 305 (338)
T cd05102 240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE------FCQRLKDGTRM-----RA---PENATPE 305 (338)
T ss_pred ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH------HHHHHhcCCCC-----CC---CCCCCHH
Confidence 46999999999999999999999999999997 9999865432211 11122222111 11 1223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..||+.+|++||+|.||+++|+....
T Consensus 306 l~~li~~cl~~dp~~RPs~~el~~~l~~~~~ 336 (338)
T cd05102 306 IYRIMLACWQGDPKERPTFSALVEILGDLLQ 336 (338)
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 7889999999999999999999999987543
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-12 Score=138.97 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=67.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.++|||||||+++|++| |+.|+......+. +..+ ...+... . .+.....++
T Consensus 208 ~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~--~~~~----~~~~~~~-----~---~~~~~~~~~ 273 (302)
T cd05055 208 KWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK--FYKL----IKEGYRM-----A---QPEHAPAEI 273 (302)
T ss_pred ccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH--HHHH----HHcCCcC-----C---CCCCCCHHH
Confidence 4999999999999999999999999999998 9999765432211 1111 1111110 0 011123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..|++.+|++||++.||++.|+..
T Consensus 274 ~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 274 YDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 8899999999999999999999999763
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-12 Score=137.01 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=62.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.+..++.++|||||||+++||++|+.|+......+ + ..... .+.. .+.+ .....+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~---~---~~~~~-~~~~--~~~~-------~~~~~~ 223 (325)
T cd05604 160 PEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAE---M---YDNIL-HKPL--VLRP-------GASLTA 223 (325)
T ss_pred hhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHH---H---HHHHH-cCCc--cCCC-------CCCHHH
Confidence 56999999999999999999999999999999999987543221 1 11111 1111 1111 122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
.++...|++.+|.+||++++.+..+
T Consensus 224 ~~ll~~ll~~~p~~R~~~~~~~~~i 248 (325)
T cd05604 224 WSILEELLEKDRQRRLGAKEDFLEI 248 (325)
T ss_pred HHHHHHHhccCHHhcCCCCCCHHHH
Confidence 6788999999999999987544443
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-12 Score=134.21 Aligned_cols=92 Identities=27% Similarity=0.406 Sum_probs=68.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+...+.++.++|||||||+++|++| |+.|+......+ ..++. ..+.. + ..+......
T Consensus 167 ~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~~----~~~~~-----~---~~~~~~~~~ 231 (260)
T cd05069 167 IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE---VLEQV----ERGYR-----M---PCPQGCPES 231 (260)
T ss_pred hhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHH----HcCCC-----C---CCCcccCHH
Confidence 35999999999999999999999999999999 888887544322 22221 11110 0 111223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+|++.+|++||+|.+|.+.|+.
T Consensus 232 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 232 LHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred HHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 7788899999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-12 Score=135.05 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=68.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++..+.++.++||||||++++|+++ |+.|+......+ +..++. ++... +. +......+
T Consensus 174 ~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~---~~~~~~----~~~~~----~~----~~~~~~~~ 238 (267)
T cd05066 174 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD---VIKAIE----EGYRL----PA----PMDCPAAL 238 (267)
T ss_pred eecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH---HHHHHh----CCCcC----CC----CCCCCHHH
Confidence 5999999999999999999999999999887 999986543322 222221 11100 11 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..|++.+|.+||+|.+|++.|+..
T Consensus 239 ~~li~~~l~~~p~~Rp~~~~i~~~l~~~ 266 (267)
T cd05066 239 HQLMLDCWQKDRNERPKFEQIVSILDKL 266 (267)
T ss_pred HHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence 7899999999999999999999999763
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-12 Score=132.68 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+..+..++.|+|||||||+++||+||+.|+.......... .... ...+.+ ..+......+
T Consensus 163 ~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~-------~~~~-----~~~~~~-~~~~~~~~~~ 229 (256)
T cd06612 163 PFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIF-------MIPN-----KPPPTL-SDPEKWSPEF 229 (256)
T ss_pred ccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhh-------hhcc-----CCCCCC-CchhhcCHHH
Confidence 57999999999999999999999999999999999987543322110 0000 000111 1112223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++..+|++.+|++||+|.||++
T Consensus 230 ~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 230 NDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred HHHHHHHHhcChhhCcCHHHHhc
Confidence 78889999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-12 Score=133.17 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=64.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++||||||++++||++|+.|++...... ..... ..+....+ +......+
T Consensus 164 ~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~------~~~~~-~~~~~~~~--------~~~~~~~~ 228 (255)
T cd08219 164 PYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN------LILKV-CQGSYKPL--------PSHYSYEL 228 (255)
T ss_pred ccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHH------HHHHH-hcCCCCCC--------CcccCHHH
Confidence 45999999999999999999999999999999999987543221 11111 12221111 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
.+++.+||+.+|++||++.+++..
T Consensus 229 ~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 229 RSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHHHHHHhCCcccCCCHHHHhhc
Confidence 778899999999999999999763
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-12 Score=137.52 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=69.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+..+..++.++|||||||+++|++| |..|+...... ++... ...+... ..+..+...+
T Consensus 204 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~------~~~~~-~~~~~~~--------~~~~~~~~~~ 268 (304)
T cd05101 204 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE------ELFKL-LKEGHRM--------DKPANCTNEL 268 (304)
T ss_pred eeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH------HHHHH-HHcCCcC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 77777543322 11111 2222111 1112334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||+|.||++.|++....
T Consensus 269 ~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~ 299 (304)
T cd05101 269 YMMMRDCWHAIPSHRPTFKQLVEDLDRILTL 299 (304)
T ss_pred HHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999876543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-12 Score=137.00 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.|+|||||||+++|++||+.|+....... .. .. +..+. .+.+ .......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~---~~---~~-~~~~~-----~~~~---~~~~~~~~ 229 (277)
T cd06642 165 PFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR---VL---FL-IPKNS-----PPTL---EGQYSKPF 229 (277)
T ss_pred ccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh---HH---hh-hhcCC-----CCCC---CcccCHHH
Confidence 46999999999999999999999999999999999976433221 11 11 11111 1111 12234567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||+|.+|++
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06642 230 KEFVEACLNKDPRFRPTAKELLK 252 (277)
T ss_pred HHHHHHHccCCcccCcCHHHHHH
Confidence 78999999999999999999987
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-12 Score=140.37 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=63.8
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHH----------------HHHHHHhhcCcccc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL----------------EWAWNLHENNQSLG 631 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~----------------~~~~~~~~~~~~~~ 631 (755)
..|+|||++.+. .++.++|||||||+++||+||+.|+......+..... +++...+.......
T Consensus 168 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (372)
T cd07853 168 QYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKP 247 (372)
T ss_pred CCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCC
Confidence 359999998764 5799999999999999999999998765433221111 01111111000000
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 632 LVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 632 ~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-..+.+.....+....+.+++..|++.+|.+|||+.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 287 (372)
T cd07853 248 PSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA 287 (372)
T ss_pred CchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence 0000000111122345778999999999999999999975
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-12 Score=136.32 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=63.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.|+|||||||+++||+||+.|+....... +.. ....+.. .+ +......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~---~~~----~i~~~~~------~~---~~~~~~~~ 223 (318)
T cd05570 160 PDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDE---LFQ----SILEDEV------RY---PRWLSKEA 223 (318)
T ss_pred ccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHH---HHH----HHHcCCC------CC---CCcCCHHH
Confidence 57999999999999999999999999999999999987543221 111 1111111 11 11223456
Q ss_pred HHHHHHhcccCCCCCCCH-----HHHHH
Q 004413 649 IGVALLCTQASPMMRPPM-----SRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm-----~~v~~ 671 (755)
.+++..|++.+|.+||++ .+++.
T Consensus 224 ~~li~~~l~~dP~~R~s~~~~~~~~ll~ 251 (318)
T cd05570 224 KSILKSFLTKNPEKRLGCLPTGEQDIKG 251 (318)
T ss_pred HHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence 788999999999999999 66653
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-12 Score=134.77 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=63.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+..+..++.|+|||||||++||++||+.|+....... .... ...+.. +.+.+. .....+
T Consensus 162 ~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~------~~~~-~~~~~~-----~~~~~~--~~~~~~ 227 (274)
T cd06609 162 PFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR------VLFL-IPKNNP-----PSLEGN--KFSKPF 227 (274)
T ss_pred ccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH------HHHH-hhhcCC-----CCCccc--ccCHHH
Confidence 35999999999999999999999999999999999986543211 1111 111111 111111 023356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||+|+++++
T Consensus 228 ~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 228 KDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred HHHHHHHhhCChhhCcCHHHHhh
Confidence 77889999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-12 Score=133.76 Aligned_cols=92 Identities=25% Similarity=0.298 Sum_probs=68.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+...+.++.++||||||++++|+++ |+.|+......+ +... ...+...+ .+......
T Consensus 163 ~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~----~~~~~~~~--------~~~~~~~~ 227 (256)
T cd05039 163 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD---VVPH----VEKGYRME--------APEGCPPE 227 (256)
T ss_pred ccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHH----HhcCCCCC--------CccCCCHH
Confidence 35999999999999999999999999999998 998886543222 2221 11111111 11122356
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+|++.+|++||++.|++++|+.
T Consensus 228 ~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 228 VYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred HHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 7789999999999999999999999975
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-13 Score=145.67 Aligned_cols=190 Identities=27% Similarity=0.364 Sum_probs=165.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
..||+.|++. .+|..++.|-.|+.|.|..|.+. .+|..++++..|.+|||+.|+++ .+|..++.|+ |+.|.+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 4689999998 89999999999999999999997 89999999999999999999995 6788888887 9999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++ .+|..++.+..|.+|+.+.|.+. .+|..++++.+|+.|.+..|+......... . -.|..||++.|+++ .+|-.
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~-LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S-LPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C-CceeeeecccCcee-ecchh
Confidence 99 78999999999999999999998 788899999999999999988776655543 3 35889999999999 89999
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCC---CCEEEccCCc
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGS---LNYLFLGNNS 201 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~ 201 (755)
|..++.|++|-|.+|.++ ..|..++-... .++|+..-++
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999999999999999 67777765443 3566666664
|
|
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-12 Score=136.74 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=61.8
Q ss_pred cccchhhhhcCC-----CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 570 GYLAPEYAMRGH-----LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 570 gy~aPE~~~~~~-----~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
.|+|||++..++ ++.|+|||||||+++||+||+.|+....... .+..+ ..+....+.+ +...
T Consensus 193 ~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~--~~~~~-----~~~~~~~~~~------~~~~ 259 (291)
T cd06639 193 FWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVK--TLFKI-----PRNPPPTLLH------PEKW 259 (291)
T ss_pred cccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHH--HHHHH-----hcCCCCCCCc------cccc
Confidence 599999886543 6899999999999999999999987543221 11111 1111111111 1122
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|++||+|.|+++
T Consensus 260 ~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 260 CRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred CHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 345788999999999999999999875
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-12 Score=131.28 Aligned_cols=44 Identities=30% Similarity=0.457 Sum_probs=39.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME 612 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~ 612 (755)
+-|||||+++.++|+.|+|.||.|++|||++||+.|++.....+
T Consensus 178 plYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~e 221 (429)
T KOG0595|consen 178 PLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKE 221 (429)
T ss_pred ccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHH
Confidence 45999999999999999999999999999999999998765443
|
|
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-12 Score=133.14 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..++.++.|+|||||||+++|++||+.|+...... +.+..... +... ..+......+
T Consensus 165 ~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~------~~~~~~~~-~~~~--------~~~~~~~~~~ 229 (256)
T cd08218 165 PYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMK------NLVLKIIR-GSYP--------PVSSHYSYDL 229 (256)
T ss_pred ccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHH------HHHHHHhc-CCCC--------CCcccCCHHH
Confidence 4699999999999999999999999999999999998754322 12222221 1111 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||+|.+|++
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 230 RNLVSQLFKRNPRDRPSVNSILE 252 (256)
T ss_pred HHHHHHHhhCChhhCcCHHHHhh
Confidence 88999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-12 Score=134.91 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=69.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchh-----hHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDM-----EKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++.++.++.++|||||||+++|++||+.|++..... ....+.++........ .+.+. ..+
T Consensus 166 ~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~ 237 (284)
T cd06620 166 STYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP------PPRLP--SSD 237 (284)
T ss_pred cccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhcc------CCCCC--chh
Confidence 4799999998899999999999999999999999998754331 1122334443333211 11111 011
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
....+.+++..|++.+|++||+|.||+++.
T Consensus 238 ~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~ 267 (284)
T cd06620 238 FPEDLRDFVDACLLKDPTERPTPQQLCAMP 267 (284)
T ss_pred cCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence 334677889999999999999999998764
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-12 Score=134.61 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=62.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||.+....++.++|||||||+++||+||+.|+....... +... ...+. ..+ +......+
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~---~~~~----~~~~~------~~~---p~~~~~~~ 222 (323)
T cd05571 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LFEL----ILMEE------IRF---PRTLSPEA 222 (323)
T ss_pred ccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH---HHHH----HHcCC------CCC---CCCCCHHH
Confidence 67999999999999999999999999999999999987543221 1111 11111 111 11223356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|++|| +..++++
T Consensus 223 ~~li~~~L~~dP~~R~~~~~~~~~~ll~ 250 (323)
T cd05571 223 KSLLAGLLKKDPKQRLGGGPEDAKEIME 250 (323)
T ss_pred HHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence 6788899999999999 7887763
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-12 Score=140.28 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=59.8
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++.. ...+.|+|||||||++|||++|+.|+......+...+.. .. ..+. .+ ..+..
T Consensus 232 ~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~---~~-~~~~-----~~---~~~~~ 299 (353)
T PLN00034 232 IAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMC---AI-CMSQ-----PP---EAPAT 299 (353)
T ss_pred ccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHH---HH-hccC-----CC---CCCCc
Confidence 36999998743 234568999999999999999999987432211111111 10 0000 01 11122
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++..||+.+|++||++.||++
T Consensus 300 ~~~~l~~li~~~l~~~P~~Rpt~~ell~ 327 (353)
T PLN00034 300 ASREFRHFISCCLQREPAKRWSAMQLLQ 327 (353)
T ss_pred cCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 3346778899999999999999999985
|
|
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-12 Score=136.59 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=36.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
..|+|||++.+..++.++|||||||+++|+++|+.|+...
T Consensus 166 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~ 205 (333)
T cd06650 166 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP 205 (333)
T ss_pred ccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 4699999999999999999999999999999999998754
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-12 Score=133.14 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=70.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+...+.++.++||||||++++|++| |+.|++.....+ +..++. .+... ..+..+...+
T Consensus 176 ~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---~~~~~~----~~~~~--------~~~~~~~~~~ 240 (279)
T cd05057 176 KWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE---IPDLLE----KGERL--------PQPPICTIDV 240 (279)
T ss_pred cccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH---HHHHHh----CCCCC--------CCCCCCCHHH
Confidence 4999999998999999999999999999999 999987543222 222221 11110 1111223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||..+|.+||++.++++.|+....
T Consensus 241 ~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~ 270 (279)
T cd05057 241 YMVLVKCWMIDAESRPTFKELINEFSKMAR 270 (279)
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 788999999999999999999999987644
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-12 Score=134.24 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=59.4
Q ss_pred ccccchhhhh------cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 569 HGYLAPEYAM------RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~------~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
..|+|||++. ...++.++|||||||+++||+||+.|+....... .............. +....
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~------~~~~i~~~~~~~~~--~~~~~--- 235 (330)
T cd05601 167 PDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK------TYNNIMNFQRFLKF--PEDPK--- 235 (330)
T ss_pred ccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH------HHHHHHcCCCccCC--CCCCC---
Confidence 4699999987 5678899999999999999999999987543321 11122111111111 11011
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.++...|++ +|.+||++.+++.
T Consensus 236 -~~~~~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 236 -VSSDFLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred -CCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence 12345566777887 9999999999874
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-12 Score=133.29 Aligned_cols=88 Identities=22% Similarity=0.378 Sum_probs=65.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++|++||+.|+........ . . ....+. ...........+
T Consensus 165 ~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~---~---~-~~~~~~--------~~~~~~~~~~~~ 229 (277)
T cd06640 165 PFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRV---L---F-LIPKNN--------PPTLTGEFSKPF 229 (277)
T ss_pred ccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhH---h---h-hhhcCC--------CCCCchhhhHHH
Confidence 369999999999999999999999999999999999865433221 1 0 011111 112233455678
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..||+.+|++||+|.+|++
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~il~ 252 (277)
T cd06640 230 KEFIDACLNKDPSFRPTAKELLK 252 (277)
T ss_pred HHHHHHHcccCcccCcCHHHHHh
Confidence 88999999999999999999975
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-12 Score=132.54 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=69.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+.....++.++|||||||+++|+++ |+.|+......+ ...+. ..+.... .+......+
T Consensus 173 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~---~~~~~----~~~~~~~--------~~~~~~~~~ 237 (270)
T cd05056 173 KWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNND---VIGRI----ENGERLP--------MPPNCPPTL 237 (270)
T ss_pred cccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHH---HHHHH----HcCCcCC--------CCCCCCHHH
Confidence 5999999988899999999999999999997 999987554322 12221 1111110 112233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++.+|+..+|++||++.+++..|+....
T Consensus 238 ~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~ 267 (270)
T cd05056 238 YSLMTKCWAYDPSKRPRFTELKAQLSDILQ 267 (270)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 788999999999999999999999987543
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-12 Score=135.78 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=60.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++|||||||+++||+||+.|+....... +.+ ... .+. + ..+......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~---~i~-~~~--------~-~~~~~~~~~~ 223 (321)
T cd05603 160 PEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQ---MYD---NIL-HKP--------L-QLPGGKTVAA 223 (321)
T ss_pred cccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHH---HHH---HHh-cCC--------C-CCCCCCCHHH
Confidence 57999999999999999999999999999999999987543211 111 111 111 0 1122233467
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.++...|++.+|.+||+..
T Consensus 224 ~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 224 CDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred HHHHHHHccCCHhhcCCCC
Confidence 7899999999999999764
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-12 Score=138.60 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=59.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++||+||+.|++.....+ +...+. ++.. .++......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~---~~~~i~----~~~~---------~~p~~~s~~~ 228 (323)
T cd05616 165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE---LFQSIM----EHNV---------AYPKSMSKEA 228 (323)
T ss_pred hhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH---HHHHHH----hCCC---------CCCCcCCHHH
Confidence 46999999999999999999999999999999999997644322 221111 1111 1111223456
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.+++..|++.+|.+|++.
T Consensus 229 ~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 229 VAICKGLMTKHPGKRLGC 246 (323)
T ss_pred HHHHHHHcccCHHhcCCC
Confidence 788999999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-12 Score=135.01 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=57.3
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|||||++.+. .++.++|||||||+++||+||+.|+......+ ....+..+.. .+.. ......
T Consensus 160 ~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~-------~~~~i~~~~~------~~~~--~~~~~~ 224 (330)
T cd05586 160 TEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQ-------MYRNIAFGKV------RFPK--NVLSDE 224 (330)
T ss_pred ccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHH-------HHHHHHcCCC------CCCC--ccCCHH
Confidence 579999998765 48999999999999999999999987543221 1111222211 1110 001234
Q ss_pred HHHHHHHhcccCCCCCCCHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~ 668 (755)
+.++...|++.+|.+||++.+
T Consensus 225 ~~~li~~~L~~~P~~R~~~~~ 245 (330)
T cd05586 225 GRQFVKGLLNRNPQHRLGAHR 245 (330)
T ss_pred HHHHHHHHcCCCHHHCCCCCC
Confidence 567888999999999996443
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-12 Score=136.70 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=62.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchh--hHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDM--EKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|++..... .......|+.+....+.. . .+.....
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~------~---~p~~~~~ 230 (329)
T cd05618 160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI------R---IPRSLSV 230 (329)
T ss_pred ccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCC------C---CCCCCCH
Confidence 5799999999999999999999999999999999998632111 111223444443332221 1 1222234
Q ss_pred HHHHHHHHhcccCCCCCCC
Q 004413 647 RVIGVALLCTQASPMMRPP 665 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPs 665 (755)
.+.+++..|++.+|++||+
T Consensus 231 ~~~~ll~~~L~~dP~~R~~ 249 (329)
T cd05618 231 KAASVLKSFLNKDPKERLG 249 (329)
T ss_pred HHHHHHHHHhcCCHHHcCC
Confidence 5678899999999999998
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-12 Score=130.73 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=59.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++|++||+.|+........ +...... ...+.+... +...
T Consensus 173 ~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~------~~~~~~~-----~~~~~~~~~----~~~~ 237 (266)
T cd06651 173 PYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAA------IFKIATQ-----PTNPQLPSH----ISEH 237 (266)
T ss_pred ccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHH------HHHHhcC-----CCCCCCchh----cCHH
Confidence 469999999999999999999999999999999999865432111 1111111 112222111 1122
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
++..+.||..+|++||+|.||++
T Consensus 238 ~~~li~~~~~~p~~Rp~~~eil~ 260 (266)
T cd06651 238 ARDFLGCIFVEARHRPSAEELLR 260 (266)
T ss_pred HHHHHHHhcCChhhCcCHHHHhc
Confidence 23334799899999999999964
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-12 Score=132.97 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=63.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.++||||||++++||+||+.|+......... ....+... .... ..+.+.. .....+
T Consensus 157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~--~~~~~~ 228 (279)
T cd06619 157 NAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQC-IVDE-----DPPVLPV--GQFSEK 228 (279)
T ss_pred hhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHH-Hhcc-----CCCCCCC--CcCCHH
Confidence 4699999999999999999999999999999999998653221111 01111111 1111 1111110 111235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++||++.|+++
T Consensus 229 ~~~li~~~l~~~P~~Rp~~~eil~ 252 (279)
T cd06619 229 FVHFITQCMRKQPKERPAPENLMD 252 (279)
T ss_pred HHHHHHHHhhCChhhCCCHHHHhc
Confidence 678888999999999999999975
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-12 Score=133.61 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=61.9
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
.+|+|||++. +..++.|+|||||||+++||+||+.|+........ +.. ...+......++. .
T Consensus 188 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~--~~~-----~~~~~~~~~~~~~------~ 254 (286)
T cd06638 188 PFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRA--LFK-----IPRNPPPTLHQPE------L 254 (286)
T ss_pred CcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHH--Hhh-----ccccCCCcccCCC------C
Confidence 4699999875 34578999999999999999999999875432211 111 0111111111111 1
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
....+..++.+|++.+|++||+|.||++.
T Consensus 255 ~~~~~~~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 255 WSNEFNDFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred cCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence 22357789999999999999999999863
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-12 Score=132.00 Aligned_cols=91 Identities=29% Similarity=0.388 Sum_probs=67.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+..+..++.++|||||||+++|++| |+.|+....... ..++. ..+. . . ..+......+
T Consensus 169 ~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~---~~~~~----~~~~-~----~---~~~~~~~~~~ 233 (261)
T cd05034 169 KWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNRE---VLEQV----ERGY-R----M---PRPPNCPEEL 233 (261)
T ss_pred cccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHH----HcCC-C----C---CCCCCCCHHH
Confidence 5999999999999999999999999999999 999986543221 11111 1110 0 0 0011223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++.+|++.+|++||++.++.+.|+.
T Consensus 234 ~~~i~~~l~~~p~~Rp~~~~l~~~l~~ 260 (261)
T cd05034 234 YDLMLQCWDKDPEERPTFEYLQSFLED 260 (261)
T ss_pred HHHHHHHcccCcccCCCHHHHHHHHhc
Confidence 889999999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=129.03 Aligned_cols=95 Identities=24% Similarity=0.301 Sum_probs=63.2
Q ss_pred ccccchhhhhc-------CCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCC
Q 004413 569 HGYLAPEYAMR-------GHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEF 640 (755)
Q Consensus 569 ~gy~aPE~~~~-------~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 640 (755)
..|+|||+... ..++.++|||||||+++||++ |+.|++.....+ +....+. +....+.++.+...
T Consensus 165 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~ 237 (268)
T cd05086 165 LRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDRE------VLNHVIK-DQQVKLFKPQLELP 237 (268)
T ss_pred ccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHH------HHHHHHh-hcccccCCCccCCC
Confidence 46999998753 346789999999999999998 466775433221 1222222 22234555555321
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 641 NDKEALRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 641 ~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
. ..++.++...|| .+|++||+|.+|++.|.
T Consensus 238 ~---~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~ 267 (268)
T cd05086 238 Y---SERWYEVLQFCW-LSPEKRATAEEVHRLLT 267 (268)
T ss_pred C---cHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence 1 134556777899 56999999999999884
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-12 Score=130.40 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=61.8
Q ss_pred ccccchhhhh-cCCCCccceeeeehheeehhh-hCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAM-RGHLTEKADVFSFGVAALEII-SGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~-~~~~t~ksDVysfGvvllEll-tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|||||++. ...++.++|||||||++|||+ +|+.|+......+.. ... .+.. .... ....
T Consensus 172 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~-------~~~-~~~~-~~~~--------~~~~ 234 (262)
T cd05077 172 IPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKE-------RFY-EGQC-MLVT--------PSCK 234 (262)
T ss_pred ccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHH-------HHH-hcCc-cCCC--------CChH
Confidence 4699999887 567899999999999999998 588886543222111 111 1110 1111 1124
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
.+.+++..||+.+|.+||+|.++++.+
T Consensus 235 ~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 235 ELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 577899999999999999999998876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-12 Score=132.15 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=69.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|++||+.....++.++||||||++++||++ |+.|+..... ..+..+.. .+... ..+......
T Consensus 179 ~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~---~~~~~~~~----~~~~~--------~~~~~~~~~ 243 (273)
T cd05074 179 VKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN---SEIYNYLI----KGNRL--------KQPPDCLED 243 (273)
T ss_pred hhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH---HHHHHHHH----cCCcC--------CCCCCCCHH
Confidence 36999999999999999999999999999999 8888764432 22222222 11100 011223457
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++.+|++.+|++||++.+|.+.|++.
T Consensus 244 ~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 244 VYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 88999999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-12 Score=132.48 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=63.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhh-hCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEII-SGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllEll-tg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||++.. ..++.++|||||||++||++ +|+.|+......+. ..+. .... .+ +.....
T Consensus 184 ~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~---~~~~----~~~~-------~~---~~~~~~ 246 (274)
T cd05076 184 IPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEK---ERFY----EKKH-------RL---PEPSCK 246 (274)
T ss_pred CcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHH---HHHH----Hhcc-------CC---CCCCCh
Confidence 46999998875 56899999999999999985 68988865433221 1111 1100 01 011123
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+.+++..||+.+|++||+|.+|++.|+
T Consensus 247 ~~~~li~~cl~~~p~~Rps~~~il~~L~ 274 (274)
T cd05076 247 ELATLISQCLTYEPTQRPSFRTILRDLT 274 (274)
T ss_pred HHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence 5778999999999999999999998873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-12 Score=131.68 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=64.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++|||||||+++|+++|+.|+..... .+++..... +.. ++. .......+
T Consensus 166 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~------~~~~~~~~~-~~~----~~~----~~~~~~~~ 230 (257)
T cd08225 166 PYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL------HQLVLKICQ-GYF----API----SPNFSRDL 230 (257)
T ss_pred ccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH------HHHHHHHhc-ccC----CCC----CCCCCHHH
Confidence 469999999999999999999999999999999999864322 223333222 111 111 11122357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++..+|++.+|++||+|.||++
T Consensus 231 ~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 231 RSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred HHHHHHHhccChhhCcCHHHHhh
Confidence 78889999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-12 Score=131.45 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=64.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+.....++.++|||||||+++|++||+.|++..... ..+..... +....+ +......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~------~~~~~~~~-~~~~~~--------~~~~~~~l 229 (256)
T cd08220 165 PCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLP------ALVLKIMS-GTFAPI--------SDRYSPDL 229 (256)
T ss_pred CcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchH------HHHHHHHh-cCCCCC--------CCCcCHHH
Confidence 5799999999989999999999999999999999998654321 11221111 111111 11233457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...||+.+|++||||.|+++
T Consensus 230 ~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 230 RQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred HHHHHHHccCChhhCCCHHHHhh
Confidence 78999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-12 Score=134.32 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.++.++.++|||||||+++||+||+.|+........ .+ ... .+. ..+ +......+
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~---~~---~~~-~~~------~~~---p~~~~~~~ 222 (323)
T cd05595 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL---FE---LIL-MEE------IRF---PRTLSPEA 222 (323)
T ss_pred cCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHH---HH---HHh-cCC------CCC---CCCCCHHH
Confidence 579999999999999999999999999999999999865432221 11 111 111 111 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|++|| ++.++++
T Consensus 223 ~~li~~~L~~dP~~R~~~~~~~~~~~l~ 250 (323)
T cd05595 223 KSLLAGLLKKDPKQRLGGGPSDAKEVME 250 (323)
T ss_pred HHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence 6788899999999998 7777764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-12 Score=133.39 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=60.9
Q ss_pred cccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 570 GYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 570 gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
.|+|||.+. ...++.|+|||||||+++||+||+.|+.......... ...+ ...+.+. ....
T Consensus 186 ~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~------~~~~------~~~~~~~--~~~~ 251 (282)
T cd06636 186 YWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF------LIPR------NPPPKLK--SKKW 251 (282)
T ss_pred cccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhh------hHhh------CCCCCCc--cccc
Confidence 599999875 4568899999999999999999999986543222111 0000 0111111 1112
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..||+.+|.+||++.|+++
T Consensus 252 ~~~~~~li~~cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 252 SKKFIDFIEGCLVKNYLSRPSTEQLLK 278 (282)
T ss_pred CHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence 346788899999999999999999864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-12 Score=130.42 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=63.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+..++.++|||||||++||++||+.|+........ ..+ ...... .+ ..+......+
T Consensus 171 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~~~---~~~~~~-----~~---~~~~~~~~~~ 236 (263)
T cd06625 171 PYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAA---IFK---IATQPT-----NP---QLPSHVSPDA 236 (263)
T ss_pred ccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHH---HHH---HhccCC-----CC---CCCccCCHHH
Confidence 359999999999999999999999999999999999865332211 111 111100 01 1122233456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+||++.|+++
T Consensus 237 ~~li~~~l~~~p~~Rpt~~~ll~ 259 (263)
T cd06625 237 RNFLRRTFVENAKKRPSAEELLR 259 (263)
T ss_pred HHHHHHHhhcCcccCCCHHHHhh
Confidence 77889999999999999999975
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.6e-12 Score=134.30 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=60.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.|+|||||||+++||+||+.|+......+ ... ... .+.. .+ +......+
T Consensus 162 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~---~~~---~i~-~~~~------~~---p~~~~~~~ 225 (318)
T cd05582 162 VEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE---TMT---MIL-KAKL------GM---PQFLSPEA 225 (318)
T ss_pred hhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHH---HHH---HHH-cCCC------CC---CCCCCHHH
Confidence 57999999998899999999999999999999999987543322 111 111 1111 11 11122346
Q ss_pred HHHHHHhcccCCCCCCCHHH
Q 004413 649 IGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~ 668 (755)
.++...|++.+|++||++.+
T Consensus 226 ~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 226 QSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred HHHHHHHhhcCHhHcCCCCC
Confidence 67889999999999999765
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-12 Score=136.78 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=59.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.+..++.++|||||||+++||+||+.|+......+ + ..... .+.. .. +......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~---~---~~~i~-~~~~------~~---p~~~~~~~ 228 (324)
T cd05589 165 PEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE---V---FDSIV-NDEV------RY---PRFLSREA 228 (324)
T ss_pred ccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH---H---HHHHH-hCCC------CC---CCCCCHHH
Confidence 57999999999999999999999999999999999987543221 1 11111 1111 11 11123456
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.+++..|++.+|.+||++.
T Consensus 229 ~~li~~~L~~dP~~R~~~~ 247 (324)
T cd05589 229 ISIMRRLLRRNPERRLGSG 247 (324)
T ss_pred HHHHHHHhhcCHhHcCCCC
Confidence 7789999999999999644
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-12 Score=136.43 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHH----------------HHHHHHHHhhcC-cccc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY----------------LLEWAWNLHENN-QSLG 631 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~----------------l~~~~~~~~~~~-~~~~ 631 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+......+... +...+....... ....
T Consensus 182 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
T cd07874 182 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 261 (355)
T ss_pred CCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCcccc
Confidence 46999999999999999999999999999999999987543221110 000111111110 0000
Q ss_pred ccCCCC---------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 632 LVDPTL---------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 632 ~~d~~l---------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+..+.. ..........+.++..+|++.+|++|||+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~ 310 (355)
T cd07874 262 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ 310 (355)
T ss_pred ccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence 100110 0111122346778999999999999999999985
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=131.69 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=62.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.++.++.++|||||||+++||+||+.|+........ ... ...+. ..+ +......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~---~~~----i~~~~------~~~---p~~~~~~~ 223 (325)
T cd05594 160 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKL---FEL----ILMEE------IRF---PRTLSPEA 223 (325)
T ss_pred cccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHH---HHH----HhcCC------CCC---CCCCCHHH
Confidence 679999999999999999999999999999999999875433221 111 11111 111 11122346
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|++|+ ++.++++
T Consensus 224 ~~li~~~L~~dP~~R~~~~~~~~~~il~ 251 (325)
T cd05594 224 KSLLSGLLKKDPKQRLGGGPDDAKEIMQ 251 (325)
T ss_pred HHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence 6788899999999996 8888864
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-12 Score=142.54 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=63.9
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-------hh--cCccccccCCCC-
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-------HE--NNQSLGLVDPTL- 637 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-------~~--~~~~~~~~d~~l- 637 (755)
..|||||++.+ ..++.++|||||||+++||+||+.|+......+. +...+... +. .....++--+.+
T Consensus 234 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~--~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 311 (440)
T PTZ00036 234 RFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQ--LVRIIQVLGTPTEDQLKEMNPNYADIKFPDVK 311 (440)
T ss_pred cCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHHHHhCCCCHHHHHHhchhhhcccCCccC
Confidence 35999998865 4799999999999999999999999875443221 11111100 00 000000000111
Q ss_pred -----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 -----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 -----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++......+.+++..|++.+|.+|||+.|+++
T Consensus 312 ~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~ 350 (440)
T PTZ00036 312 PKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA 350 (440)
T ss_pred chhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence 0011122346778999999999999999999974
|
|
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-12 Score=133.86 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=65.4
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH--------HHh-hcCcc-----cccc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW--------NLH-ENNQS-----LGLV 633 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~--------~~~-~~~~~-----~~~~ 633 (755)
..|+|||+.... .++.|+||||||++++|+++|+.|+......+......+.. ..+ ..... .+..
T Consensus 165 ~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (288)
T cd07833 165 RWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPS 244 (288)
T ss_pred cCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCC
Confidence 459999999888 89999999999999999999999987543322111111100 000 00000 0010
Q ss_pred CCCC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 DPTL--TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 d~~l--~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
++.. ..++......+.+++..|++.+|++||+|++|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 284 (288)
T cd07833 245 QPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ 284 (288)
T ss_pred CcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence 1000 0112223567889999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-12 Score=136.23 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=33.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANS 605 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~ 605 (755)
..|+|||++.+..++.++|||||||++|||+++..++
T Consensus 220 ~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 220 VETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred ccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence 4699999999999999999999999999999976664
|
|
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-11 Score=132.04 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=61.7
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..+|+|||++.+..++.++|||||||+++||+||+.|+......+ +.+ ....+ .+.+.. .....
T Consensus 159 t~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~---~~~----~~~~~------~~~~~~---~~~~~ 222 (316)
T cd05620 159 TPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDE---LFE----SIRVD------TPHYPR---WITKE 222 (316)
T ss_pred CcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH---HHH----HHHhC------CCCCCC---CCCHH
Confidence 367999999999999999999999999999999999987543221 111 11111 111111 12234
Q ss_pred HHHHHHHhcccCCCCCCCHH-HHH
Q 004413 648 VIGVALLCTQASPMMRPPMS-RVV 670 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~-~v~ 670 (755)
+.++...|++.+|++||++. ++.
T Consensus 223 ~~~li~~~l~~dP~~R~~~~~~~~ 246 (316)
T cd05620 223 SKDILEKLFERDPTRRLGVVGNIR 246 (316)
T ss_pred HHHHHHHHccCCHHHcCCChHHHH
Confidence 66788899999999999985 443
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-12 Score=132.41 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=63.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||+.....++.++|||||||+++|++||+.|+......+ .+. .....+. +.+ ..+......+.
T Consensus 181 ~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~--~~~----~~~~~~~------~~~-~~~~~~~~~l~ 247 (296)
T cd06654 181 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR--ALY----LIATNGT------PEL-QNPEKLSAIFR 247 (296)
T ss_pred cccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH--hHH----HHhcCCC------CCC-CCccccCHHHH
Confidence 6999999999999999999999999999999999987543221 111 1111110 011 01112234567
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++.+|++.+|++||++.+|++
T Consensus 248 ~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 248 DFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred HHHHHHCcCCcccCcCHHHHhh
Confidence 7889999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-12 Score=135.73 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=63.4
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..+|+|||++.+..++.++|||||||+++||+||+.|+...... +....... +. ..+ +......
T Consensus 156 t~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~------~~~~~~~~-~~------~~~---~~~~~~~ 219 (312)
T cd05585 156 TPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVN------EMYRKILQ-EP------LRF---PDGFDRD 219 (312)
T ss_pred CcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHH------HHHHHHHc-CC------CCC---CCcCCHH
Confidence 36799999999999999999999999999999999998754321 11222221 11 011 1112235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.++...|++.+|.+||++.++.+.|.
T Consensus 220 ~~~li~~~L~~dp~~R~~~~~~~e~l~ 246 (312)
T cd05585 220 AKDLLIGLLSRDPTRRLGYNGAQEIKN 246 (312)
T ss_pred HHHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence 667888999999999987655544443
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-12 Score=134.07 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=67.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch---------hhHHHHHHHHHHHhhcCccccccCCCCCCC
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD---------MEKIYLLEWAWNLHENNQSLGLVDPTLTEF 640 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 640 (755)
.|+|||+..++.++.++|||||||+++|++|++.|...... ........+ ......+.... .
T Consensus 177 ~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~ 247 (284)
T cd05079 177 FWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRL-VRVLEEGKRLP--------R 247 (284)
T ss_pred cccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHH-HHHHHcCccCC--------C
Confidence 49999999989999999999999999999998876432110 001111111 12222221111 1
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 641 NDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 641 ~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+......+.+++..|++.+|++||++.+|++.|+..
T Consensus 248 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 248 PPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred CCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 122345788999999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-12 Score=135.85 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=62.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|+|||++.....+..+||||.||||+-|++|++|++...-.+ ....++..+ . .+ |..-....
T Consensus 182 PNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vke-------ty~~Ik~~~---Y---~~---P~~ls~~A 245 (592)
T KOG0575|consen 182 PNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKE-------TYNKIKLNE---Y---SM---PSHLSAEA 245 (592)
T ss_pred CcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHH-------HHHHHHhcC---c---cc---ccccCHHH
Confidence 67999999999999999999999999999999999998643222 112222111 1 11 11112234
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+|...-++.+|.+|||..+|+.
T Consensus 246 ~dLI~~lL~~~P~~Rpsl~~vL~ 268 (592)
T KOG0575|consen 246 KDLIRKLLRPNPSERPSLDEVLD 268 (592)
T ss_pred HHHHHHHhcCCcccCCCHHHHhc
Confidence 45666779999999999999984
|
|
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-12 Score=132.40 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=64.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+...... ....++...... +. +......+ ...+
T Consensus 158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~--~~~~~~~~~~~~-~~----~~~~~~~~----~~~~ 226 (277)
T cd05607 158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEK--VAKEELKRRTLE-DE----VKFEHQNF----TEES 226 (277)
T ss_pred CCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcch--hhHHHHHHHhhc-cc----cccccccC----CHHH
Confidence 5899999999999999999999999999999999998643221 111112221111 11 11000112 2346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
.+++..|++.+|++||++.|+++.+
T Consensus 227 ~~li~~~L~~~P~~R~~~~~~~~~~ 251 (277)
T cd05607 227 KDICRLFLAKKPEDRLGSREKNDDP 251 (277)
T ss_pred HHHHHHHhccCHhhCCCCccchhhh
Confidence 7889999999999999998876444
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=136.20 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=130.6
Q ss_pred EEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 26 VLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLR-NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 26 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
.|++..|.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 22333445566777777777664 3444445553 6777777777766 45555666777777777777
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcc
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 184 (755)
+++ .+|.....+++|+.|++++|.+...... +..+..|++|.+++|.+. .++..+..+.++..|.+..|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 776 4555554666777777777665544332 123344777777777533 45556777788888888888877 4467
Q ss_pred cccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc
Q 004413 185 TLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 185 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
.+..+++|+.|++++|.++.........+++.|++++|.++...|....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhccccccceeccccccccccccccccCccCEEeccCccccccchhhhc
Confidence 7777888888888888888555544457888888888888866665443
|
|
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.4e-12 Score=132.35 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=62.9
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++. .+.++.|+|||||||++||++||+.|+........ ...... +. .+.+. .....
T Consensus 175 ~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~------~~~~~~-~~-----~~~~~--~~~~~ 240 (307)
T cd06607 175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQ-ND-----SPTLS--SNDWS 240 (307)
T ss_pred ccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHH------HHHHhc-CC-----CCCCC--chhhC
Confidence 4699999874 46789999999999999999999999865432221 111111 10 01111 12234
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++..+||+.+|++||+|.+|+.
T Consensus 241 ~~~~~li~~~l~~~p~~Rp~~~~il~ 266 (307)
T cd06607 241 DYFRNFVDSCLQKIPQDRPSSEELLK 266 (307)
T ss_pred HHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 56788899999999999999999986
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-12 Score=130.07 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=65.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..++.++.|+||||||++++|++||+.|++..... .+..... .+... ..+......+
T Consensus 166 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~------~~~~~~~-~~~~~--------~~~~~~~~~~ 230 (257)
T cd08223 166 PYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN------SLVYRII-EGKLP--------PMPKDYSPEL 230 (257)
T ss_pred cCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH------HHHHHHH-hcCCC--------CCccccCHHH
Confidence 5799999999999999999999999999999999998754321 1222221 12211 1122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||+|.++++
T Consensus 231 ~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 231 GELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred HHHHHHHhccCcccCCCHHHHhc
Confidence 88999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-12 Score=134.93 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh--HHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME--KIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||++.+..++.++|||||||+++||+||+.|++.....+ .....+|..+....+.. .+ +.....
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---p~~~~~ 230 (329)
T cd05588 160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQI------RI---PRSLSV 230 (329)
T ss_pred ccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCC------CC---CCCCCH
Confidence 57999999999999999999999999999999999986422111 12233444444433221 11 111233
Q ss_pred HHHHHHHHhcccCCCCCCC
Q 004413 647 RVIGVALLCTQASPMMRPP 665 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPs 665 (755)
.+.++...|++.+|.+||+
T Consensus 231 ~~~~li~~~L~~dP~~R~~ 249 (329)
T cd05588 231 KASSVLKGFLNKDPKERLG 249 (329)
T ss_pred HHHHHHHHHhccCHHHcCC
Confidence 5677889999999999997
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-12 Score=132.07 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=69.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh--CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS--GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt--g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|||||+...+.++.|+|||||||+++||++ +..|+..... ....+++...+...... ... ..+..+..
T Consensus 204 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~ 275 (304)
T cd05096 204 IRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTD---EQVIENAGEFFRDQGRQ-VYL----FRPPPCPQ 275 (304)
T ss_pred ccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCH---HHHHHHHHHHhhhcccc-ccc----cCCCCCCH
Confidence 57999999999999999999999999999997 4556654332 22333443333221111 100 11223345
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+.+++.+||+.+|++||||.||++.|++
T Consensus 276 ~~~~li~~cl~~~p~~RPs~~~i~~~l~~ 304 (304)
T cd05096 276 GLYELMLQCWSRDCRERPSFSDIHAFLTE 304 (304)
T ss_pred HHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence 78889999999999999999999999863
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=132.28 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=62.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++....++.++|||||||+++||+||+.|+....... ...... .+.. .+ +......+
T Consensus 164 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~------~~~~~~-~~~~------~~---~~~~~~~~ 227 (323)
T cd05584 164 IEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK------TIDKIL-KGKL------NL---PPYLTPEA 227 (323)
T ss_pred ccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH------HHHHHH-cCCC------CC---CCCCCHHH
Confidence 57999999999999999999999999999999999987543221 111111 1211 11 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.+++..|++.+|++|| ++.++..
T Consensus 228 ~~li~~~l~~~p~~R~~~~~~~~~~l~~ 255 (323)
T cd05584 228 RDLLKKLLKRNPSSRLGAGPGDAAEVQS 255 (323)
T ss_pred HHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence 7888999999999999 6776654
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-12 Score=134.53 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=60.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+......+ +. ..+..+.. .+ +......+
T Consensus 162 ~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~---~~----~~i~~~~~------~~---~~~~~~~~ 225 (291)
T cd05612 162 PEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG---IY----EKILAGKL------EF---PRHLDLYA 225 (291)
T ss_pred hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HH----HHHHhCCc------CC---CccCCHHH
Confidence 46999999999999999999999999999999999987543221 11 11111211 11 11112356
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~ 670 (755)
.++...|++.+|.+||+ +.|+.
T Consensus 226 ~~li~~~l~~dp~~R~~~~~~~~~~~l 252 (291)
T cd05612 226 KDLIKKLLVVDRTRRLGNMKNGADDVK 252 (291)
T ss_pred HHHHHHHcCCCHHHccCCccCCHHHHh
Confidence 77899999999999995 55554
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-12 Score=132.16 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=61.7
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||.+. ...++.++|||||||+++||+||+.|+....+.+.. .. +... ....+.... .....
T Consensus 170 ~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~--~~-----~~~~---~~~~~~~~~-~~~~~ 238 (267)
T cd06646 170 PYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL--FL-----MSKS---NFQPPKLKD-KTKWS 238 (267)
T ss_pred ccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhh--ee-----eecC---CCCCCCCcc-ccccC
Confidence 3699999874 456889999999999999999999998543221110 00 0000 011111111 11123
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
..+.+++..|++.+|++||++.++++.
T Consensus 239 ~~~~~li~~~l~~~P~~Rp~~~~il~~ 265 (267)
T cd06646 239 STFHNFVKISLTKNPKKRPTAERLLTH 265 (267)
T ss_pred HHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence 467789999999999999999999764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-12 Score=134.55 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=62.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||+||+.|++...........+++......... .+ +......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~------~~---p~~~~~~~ 230 (327)
T cd05617 160 PNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPI------RI---PRFLSVKA 230 (327)
T ss_pred cccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCC------CC---CCCCCHHH
Confidence 5799999999999999999999999999999999999643322222233344443332211 11 11122346
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.+|.+||++
T Consensus 231 ~~li~~~L~~dP~~R~~~ 248 (327)
T cd05617 231 SHVLKGFLNKDPKERLGC 248 (327)
T ss_pred HHHHHHHhccCHHHcCCC
Confidence 678899999999999985
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-12 Score=135.85 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=61.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+......+ +...+ ..+ .+.+.. .....+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~---~~~~i----~~~------~~~~~~---~~~~~~ 223 (316)
T cd05619 160 PDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEE---LFQSI----RMD------NPCYPR---WLTREA 223 (316)
T ss_pred ccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHH---HHHHH----HhC------CCCCCc---cCCHHH
Confidence 57999999999999999999999999999999999987543321 22111 111 111111 112345
Q ss_pred HHHHHHhcccCCCCCCCHH-HH
Q 004413 649 IGVALLCTQASPMMRPPMS-RV 669 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~-~v 669 (755)
.++...|++.+|++||++. ++
T Consensus 224 ~~li~~~l~~~P~~R~~~~~~l 245 (316)
T cd05619 224 KDILVKLFVREPERRLGVKGDI 245 (316)
T ss_pred HHHHHHHhccCHhhcCCChHHH
Confidence 6788899999999999997 44
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-12 Score=128.93 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=66.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||+..++.++.++|||||||+++|++| |..|+....... ....+ ..+. .+ ..+......+
T Consensus 160 ~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~---~~~~~----~~~~-------~~-~~~~~~~~~~ 224 (251)
T cd05041 160 KWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ---TRERI----ESGY-------RM-PAPQLCPEEI 224 (251)
T ss_pred ccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH---HHHHH----hcCC-------CC-CCCccCCHHH
Confidence 5999999999999999999999999999999 788876543221 11111 1110 00 0122234468
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+|++.+|.+||++.||++.|+
T Consensus 225 ~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 225 YRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred HHHHHHHhccChhhCcCHHHHHHHhh
Confidence 88999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=128.83 Aligned_cols=94 Identities=26% Similarity=0.371 Sum_probs=61.7
Q ss_pred cccchhhhhc-------CCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 570 GYLAPEYAMR-------GHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 570 gy~aPE~~~~-------~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
.|+|||+... ..++.|+|||||||+++||+| |+.|+......+ .. ......+ ...+.++.+.
T Consensus 167 ~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---~~---~~~~~~~-~~~~~~~~~~--- 236 (269)
T cd05042 167 RWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQ---VL---KQVVREQ-DIKLPKPQLD--- 236 (269)
T ss_pred cccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHH---HH---HHHhhcc-CccCCCCccc---
Confidence 4999998753 467889999999999999999 777876543222 11 1111211 1122233221
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
......+.++...|| .+|++||++.||.+.|.
T Consensus 237 ~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~ 268 (269)
T cd05042 237 LKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT 268 (269)
T ss_pred ccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence 122334556778888 49999999999999873
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-12 Score=134.85 Aligned_cols=86 Identities=15% Similarity=0.246 Sum_probs=61.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++||+||+.|+......+ +.+ ... .+. .. . +......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~---~~~---~i~-~~~---~~---~---p~~~~~~~ 223 (321)
T cd05591 160 PDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD---LFE---SIL-HDD---VL---Y---PVWLSKEA 223 (321)
T ss_pred ccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH---HHH---HHH-cCC---CC---C---CCCCCHHH
Confidence 57999999999999999999999999999999999997654322 111 111 111 11 1 11112356
Q ss_pred HHHHHHhcccCCCCCC-------CHHHHH
Q 004413 649 IGVALLCTQASPMMRP-------PMSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-------sm~~v~ 670 (755)
.++...|++.+|++|| ++.++.
T Consensus 224 ~~ll~~~L~~dp~~R~~~~~~~~~~~~~~ 252 (321)
T cd05591 224 VSILKAFMTKNPNKRLGCVASQGGEDAIK 252 (321)
T ss_pred HHHHHHHhccCHHHcCCCCCCCCCHHHHh
Confidence 6788899999999999 666665
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-12 Score=136.93 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=60.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++||+||+.|+......+ + .+.+.++.. .+.. ....++
T Consensus 179 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~---~----~~~i~~~~~------~~p~---~~~~~~ 242 (329)
T PTZ00263 179 PEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFR---I----YEKILAGRL------KFPN---WFDGRA 242 (329)
T ss_pred hhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHH---H----HHHHhcCCc------CCCC---CCCHHH
Confidence 46999999999999999999999999999999999986543221 1 111222221 1111 112346
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~ 670 (755)
.++...|++.+|.+||+ +.++.
T Consensus 243 ~~li~~~L~~dP~~R~~~~~~~~~~ll 269 (329)
T PTZ00263 243 RDLVKGLLQTDHTKRLGTLKGGVADVK 269 (329)
T ss_pred HHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence 67899999999999996 45554
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-12 Score=135.86 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=62.1
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhcCccccccC--C---
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHENNQSLGLVD--P--- 635 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~d--~--- 635 (755)
.|+|||+..+ ..++.++|||||||+++||++|+.|+.............+. ...+........++ +
T Consensus 179 ~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (342)
T cd07879 179 WYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYP 258 (342)
T ss_pred cccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcc
Confidence 4999999876 56899999999999999999999998754322211110000 00000000000000 0
Q ss_pred --CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 --TLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 --~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+..........+.++...|++.+|++||++.+|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~ 296 (342)
T cd07879 259 RKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALE 296 (342)
T ss_pred cchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 000000012235678999999999999999999984
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-11 Score=127.07 Aligned_cols=91 Identities=27% Similarity=0.375 Sum_probs=64.1
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCC--HHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFN--DKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~--~~~~ 645 (755)
.+|+|||++... .++.++|||||||+++||+||+.|+....... .+.++ ... ..+.+.... ....
T Consensus 170 ~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~--~~~~~----~~~------~~~~~~~~~~~~~~~ 237 (267)
T cd06610 170 PCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK--VLMLT----LQN------DPPSLETGADYKKYS 237 (267)
T ss_pred hhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh--hHHHH----hcC------CCCCcCCcccccccc
Confidence 469999999877 89999999999999999999999987543321 11111 111 011111100 1223
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++...|++.+|++||++.++++
T Consensus 238 ~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 238 KSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 56778999999999999999999875
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-11 Score=132.12 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=63.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc------------------
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL------------------ 630 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~------------------ 630 (755)
..|+|||++.+..++.++|||||||+++|++||+.|+....... +..+...........
T Consensus 162 ~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (308)
T cd06615 162 RSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKE---LEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMA 238 (308)
T ss_pred cCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhh---HHHhhcCccccccccCCcccccCCCCCccchhh
Confidence 47999999988889999999999999999999999986433211 111111100000000
Q ss_pred --c----cc---CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 --G----LV---DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 --~----~~---d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+ ++ .+.+.. ......+.+++.+|++.+|++||+|.||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~ 286 (308)
T cd06615 239 IFELLDYIVNEPPPKLPS--GAFSDEFQDFVDKCLKKNPKERADLKELTK 286 (308)
T ss_pred HHHHHHHHhcCCCccCcC--cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 00 000000 011235778999999999999999999975
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-12 Score=136.13 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=62.6
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-----------hhcCccccc---
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-----------HENNQSLGL--- 632 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~--- 632 (755)
..|+|||++.. ..++.|+|||||||+++||+||+.|+........ ..++... +......+.
T Consensus 170 ~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 246 (338)
T cd07859 170 RWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQ---LDLITDLLGTPSPETISRVRNEKARRYLSS 246 (338)
T ss_pred CCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHH---HHHHHHHhCCCCHHHHHHhhhhhHHHHHHh
Confidence 45999999875 6889999999999999999999999865432211 1111110 000000000
Q ss_pred cCCC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPT----LTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~----l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+. +..........+.+++..|++.+|++||++.|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 247 MRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA 289 (338)
T ss_pred hcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 0000 00000011234678999999999999999999984
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-12 Score=131.57 Aligned_cols=92 Identities=17% Similarity=0.278 Sum_probs=64.1
Q ss_pred ccccchhhhhcC---CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHH
Q 004413 569 HGYLAPEYAMRG---HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~~---~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~ 644 (755)
..|+|||++... .++.++|||||||+++|++||+.|+.... ...+-+.+... +. .+.+ .......
T Consensus 171 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~-~~-----~~~~~~~~~~~~ 239 (288)
T cd06616 171 RPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN-----SVFDQLTQVVK-GD-----PPILSNSEEREF 239 (288)
T ss_pred cCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc-----hHHHHHhhhcC-CC-----CCcCCCcCCCcc
Confidence 469999998876 68999999999999999999999986432 11111111111 11 1122 1111223
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++.+|++.+|++||++.+|++
T Consensus 240 ~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 240 SPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 456788999999999999999999975
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-11 Score=136.49 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=35.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSD 606 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~ 606 (755)
.+|+|||++....++.++|||||||+++||+||+.|+.
T Consensus 247 ~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~ 284 (391)
T PHA03212 247 IATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF 284 (391)
T ss_pred cCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence 46999999999999999999999999999999998864
|
|
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-11 Score=134.89 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHH---------HH-------HHHHhhcC-ccc-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL---------EW-------AWNLHENN-QSL- 630 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~---------~~-------~~~~~~~~-~~~- 630 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+......+...-+ ++ +.....+. ...
T Consensus 189 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (364)
T cd07875 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAG 268 (364)
T ss_pred CCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCC
Confidence 4699999999999999999999999999999999998754432211000 00 00000000 000
Q ss_pred ----cccCCCC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 ----GLVDPTL----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 ----~~~d~~l----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.....+ .+........+.++..+|++.+|.+|||+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~ 317 (364)
T cd07875 269 YSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317 (364)
T ss_pred CChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0000000 0011112345678999999999999999999875
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-12 Score=131.05 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=64.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHHH----HHhhc-Ccc-ccccCCCC----
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWAW----NLHEN-NQS-LGLVDPTL---- 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~~----~~~~~-~~~-~~~~d~~l---- 637 (755)
..|+|||++.+..++.++|||||||+++||++|+.|+......+.. .+..+.. ..+.. ... ...+.+..
T Consensus 171 ~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T cd07863 171 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPV 250 (288)
T ss_pred ccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCch
Confidence 3599999999999999999999999999999999998654322111 1111110 00000 000 00011110
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+...+....+.++...|++.||++|||+.|++.
T Consensus 251 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~ 284 (288)
T cd07863 251 QSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ 284 (288)
T ss_pred HHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0111122345678999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-11 Score=127.61 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=64.6
Q ss_pred ccccchhhhhcC---CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRG---HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~---~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||..... .++.++|||||||+++||+||+.|+......... .. ..... .-.+.+ .......
T Consensus 165 ~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~--~~-----~~~~~---~~~~~~-~~~~~~~ 233 (262)
T cd06613 165 PYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRAL--FL-----ISKSN---FPPPKL-KDKEKWS 233 (262)
T ss_pred ccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHH--HH-----HHhcc---CCCccc-cchhhhh
Confidence 359999998776 8999999999999999999999998764432211 11 11110 011111 1122234
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++.+||+.+|.+||++.+|+.
T Consensus 234 ~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 234 PVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 56788999999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-12 Score=135.89 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=59.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|++.....+ +...+ .++. ..+ +......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~---~~~~i----~~~~------~~~---~~~~~~~~ 228 (324)
T cd05587 165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE---LFQSI----MEHN------VSY---PKSLSKEA 228 (324)
T ss_pred ccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH---HHHHH----HcCC------CCC---CCCCCHHH
Confidence 57999999999999999999999999999999999997544322 11111 1111 111 11122356
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.+|.+||+.
T Consensus 229 ~~li~~~l~~~P~~R~~~ 246 (324)
T cd05587 229 VSICKGLLTKHPAKRLGC 246 (324)
T ss_pred HHHHHHHhhcCHHHcCCC
Confidence 778899999999999986
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-12 Score=133.66 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=63.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.+..++.++|||||||+++||++|+.|+......+ ..+++ .. +.. -+++. ....+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~i---~~-~~~--~~~~~-------~~~~~ 223 (325)
T cd05602 160 PEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE---MYDNI---LN-KPL--QLKPN-------ITNSA 223 (325)
T ss_pred ccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH---HHHHH---Hh-CCc--CCCCC-------CCHHH
Confidence 67999999999999999999999999999999999987543222 11111 11 110 01111 12346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.++...|++.+|.+||++.+.+..+.+
T Consensus 224 ~~li~~~l~~~p~~R~~~~~~~~~i~~ 250 (325)
T cd05602 224 RHLLEGLLQKDRTKRLGAKDDFMEIKN 250 (325)
T ss_pred HHHHHHHcccCHHHCCCCCCCHHHHhc
Confidence 678889999999999998765544443
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=134.11 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=64.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH----------------HHHHHHHHHhhcCc-c---
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI----------------YLLEWAWNLHENNQ-S--- 629 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~----------------~l~~~~~~~~~~~~-~--- 629 (755)
.|+|||.+.+..++.++|||||||+++||+||+.|+......... .+...+........ .
T Consensus 187 ~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (359)
T cd07876 187 YYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGI 266 (359)
T ss_pred CCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 599999999999999999999999999999999998754322110 00001111111100 0
Q ss_pred --ccccC----CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 --LGLVD----PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 --~~~~d----~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+... +............+.++...|++.+|++|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 314 (359)
T cd07876 267 SFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR 314 (359)
T ss_pred chhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence 00000 0000011112345678899999999999999999975
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-12 Score=142.85 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=63.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.+..++.++|||||||+++||+||+.|+......+ ...... .+.. ++ .+......+
T Consensus 235 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~------~~~~~~-~~~~----~~----~~~~~s~~~ 299 (478)
T PTZ00267 235 PYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQRE------IMQQVL-YGKY----DP----FPCPVSSGM 299 (478)
T ss_pred ccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHH-hCCC----CC----CCccCCHHH
Confidence 35999999999999999999999999999999999987543221 111111 1111 11 111223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||++.+++.
T Consensus 300 ~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 300 KALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred HHHHHHHhccChhhCcCHHHHHh
Confidence 78899999999999999999864
|
|
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-12 Score=134.20 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=60.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++....++.++|||||||+++||+||+.|+......+ +.+ .+..+.. ..+ ......+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~---~~~----~i~~~~~---~~~------~~~~~~~ 223 (320)
T cd05590 160 PDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD---LFE----AILNDEV---VYP------TWLSQDA 223 (320)
T ss_pred ccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---HHH----HHhcCCC---CCC------CCCCHHH
Confidence 57999999999999999999999999999999999987543321 111 1111111 111 1122356
Q ss_pred HHHHHHhcccCCCCCCCHHH
Q 004413 649 IGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~ 668 (755)
.++...|++.+|.+||++.+
T Consensus 224 ~~li~~~L~~dP~~R~~~~~ 243 (320)
T cd05590 224 VDILKAFMTKNPTMRLGSLT 243 (320)
T ss_pred HHHHHHHcccCHHHCCCCCC
Confidence 67889999999999999833
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-12 Score=130.40 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=63.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+..+..++.++|||||||+++|++||+.|+....... +... ...+.. +.+ +......+
T Consensus 165 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~------~~~~-~~~~~~-----~~~---~~~~~~~~ 229 (277)
T cd06641 165 PFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK------VLFL-IPKNNP-----PTL---EGNYSKPL 229 (277)
T ss_pred ccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH------HHHH-HhcCCC-----CCC---CcccCHHH
Confidence 35999999999999999999999999999999999986433211 1111 111111 111 12223456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||+|.++++
T Consensus 230 ~~~i~~~l~~~p~~Rp~~~~~l~ 252 (277)
T cd06641 230 KEFVEACLNKEPSFRPTAKELLK 252 (277)
T ss_pred HHHHHHHccCChhhCcCHHHHHh
Confidence 78899999999999999999987
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=133.50 Aligned_cols=96 Identities=24% Similarity=0.346 Sum_probs=70.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.+..++.|+|||||||+++|++| |+.|+......+. + ......+... . .+......
T Consensus 239 ~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~--~----~~~~~~~~~~-~-------~~~~~~~~ 304 (337)
T cd05054 239 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEE--F----CRRLKEGTRM-R-------APEYATPE 304 (337)
T ss_pred ccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHH--H----HHHHhccCCC-C-------CCccCCHH
Confidence 46999999999999999999999999999998 9999865332211 1 1122222111 0 11223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|++||++.||+++|+....
T Consensus 305 ~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 305 IYSIMLDCWHNNPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 7889999999999999999999999987543
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-11 Score=135.27 Aligned_cols=93 Identities=20% Similarity=0.362 Sum_probs=68.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+.....++.|+|||||||+++||+| |+.|+...... ..+..++ .++... ..+ .....+
T Consensus 280 ~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~--~~~~~~~----~~~~~~--~~~------~~~~~~ 345 (375)
T cd05104 280 VKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD--SKFYKMI----KEGYRM--LSP------ECAPSE 345 (375)
T ss_pred cceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch--HHHHHHH----HhCccC--CCC------CCCCHH
Confidence 46999999999999999999999999999998 88887654322 1222222 222111 011 112345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++..||+.+|++||+|.||+++|+.
T Consensus 346 l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 346 MYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred HHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 7789999999999999999999999985
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-12 Score=131.56 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=63.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+..++.++|||||||+++|++||+.|+......+.. . +. .. ....... .+......+
T Consensus 179 ~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~--~-~~---~~-~~~~~~~------~~~~~~~~~ 245 (296)
T cd06655 179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRAL--Y-LI---AT-NGTPELQ------NPEKLSPIF 245 (296)
T ss_pred ccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--H-HH---Hh-cCCcccC------CcccCCHHH
Confidence 3699999999999999999999999999999999998765432211 1 11 11 1111110 111122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..||+.+|.+||++.+|+.
T Consensus 246 ~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 246 RDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred HHHHHHHhhcChhhCCCHHHHhh
Confidence 67889999999999999999984
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-12 Score=130.87 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=63.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++|+++|+.|+....... ..+.+......+. ..++......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~ 232 (285)
T cd05605 165 VGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV---KREEVERRVKEDQ---------EEYSEKFSEAA 232 (285)
T ss_pred CCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh---HHHHHHHHhhhcc---------cccCcccCHHH
Confidence 57999999999999999999999999999999999987543221 1111111111111 11122233457
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~ 670 (755)
.+++..|++.+|.+|| ++.++.
T Consensus 233 ~~li~~~l~~~P~~R~~~~~~~~~~l~ 259 (285)
T cd05605 233 RSICRQLLTKDPGFRLGCRGEGAEEVK 259 (285)
T ss_pred HHHHHHHccCCHHHhcCCCCCCHHHHh
Confidence 7899999999999999 666664
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-12 Score=137.60 Aligned_cols=94 Identities=20% Similarity=0.379 Sum_probs=68.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|||||++..+.++.|+|||||||+++||+| |+.|+........ + ......+. .+.... .....
T Consensus 278 ~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~--~----~~~~~~~~-----~~~~~~---~~~~~ 343 (374)
T cd05106 278 VKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK--F----YKMVKRGY-----QMSRPD---FAPPE 343 (374)
T ss_pred cceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHH--H----HHHHHccc-----CccCCC---CCCHH
Confidence 46999999999999999999999999999998 9999865432211 1 11111111 111111 11245
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|.+||+|.+|+++|++.
T Consensus 344 l~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 344 IYSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 77888999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-12 Score=133.68 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=34.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
.+|+|||++.+ ..++.++|||||||+++||+||+.|+..
T Consensus 179 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~ 218 (317)
T cd07867 179 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred ccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCccc
Confidence 46999999876 4589999999999999999999999864
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-11 Score=128.50 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=62.9
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh--------c----CccccccCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE--------N----NQSLGLVDP 635 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~--------~----~~~~~~~d~ 635 (755)
..|+|||.+.+ ..++.++||||+||+++||+||+.|+......+.... ...... . ........+
T Consensus 167 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (288)
T cd07871 167 LWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHL---IFRLLGTPTEETWPGITSNEEFRSYLFP 243 (288)
T ss_pred ccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHHHhCCCChHHhhccccchhhhccccC
Confidence 46999998865 5689999999999999999999999875543322111 111110 0 000111111
Q ss_pred CCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 TLTEFN-----DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ~l~~~~-----~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+ ........++...|++.+|.+|||+.|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~ 284 (288)
T cd07871 244 QYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR 284 (288)
T ss_pred ccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 110000 011234668899999999999999999863
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-11 Score=133.05 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=62.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++....++.++|||||||+++||+||+.|+......+ +. .... .+ +..+ +......+
T Consensus 159 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~---~~---~~~~-~~------~~~~---p~~~~~~~ 222 (328)
T cd05593 159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LF---ELIL-ME------DIKF---PRTLSADA 222 (328)
T ss_pred cCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH---HH---HHhc-cC------CccC---CCCCCHHH
Confidence 67999999999999999999999999999999999986543221 11 1111 11 1111 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|++|| ++.|+++
T Consensus 223 ~~li~~~L~~dP~~R~~~~~~~~~~il~ 250 (328)
T cd05593 223 KSLLSGLLIKDPNKRLGGGPDDAKEIMR 250 (328)
T ss_pred HHHHHHHcCCCHHHcCCCCCCCHHHHhc
Confidence 6788899999999997 7888764
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-11 Score=130.14 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=63.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhH-HHHHHHHHH-------HhhcCcc-ccccCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEK-IYLLEWAWN-------LHENNQS-LGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~-~~l~~~~~~-------~~~~~~~-~~~~d~~l~ 638 (755)
..|+|||+..+ ..++.++|||||||+++||+||+.|+......+. ..+..+... ....... ..+..+...
T Consensus 164 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (286)
T cd07846 164 RWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVK 243 (286)
T ss_pred eeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccccccc
Confidence 46999999875 5578999999999999999999988864332211 111111110 0000000 001111110
Q ss_pred C------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 E------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. ........+.+++.+||+.+|++||+|.+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 282 (286)
T cd07846 244 EIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH 282 (286)
T ss_pred CcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence 0 01122456888999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=130.53 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=64.2
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++. .+.++.++|||||||+++||++|+.|+........ +..+ ...+. +.. ......
T Consensus 185 ~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~--~~~~----~~~~~------~~~--~~~~~~ 250 (317)
T cd06635 185 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA--LYHI----AQNES------PTL--QSNEWS 250 (317)
T ss_pred ccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHH--HHHH----HhccC------CCC--CCcccc
Confidence 4699999974 46789999999999999999999999765432211 1111 11111 001 011223
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
..+.+++.+|++.+|.+||++.+|++.+-.
T Consensus 251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~ 280 (317)
T cd06635 251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFV 280 (317)
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHhChhh
Confidence 457788899999999999999999875543
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-11 Score=128.77 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=67.5
Q ss_pred ccccchhhhhcC------CCCccceeeeehheeehhhhC----------CcCCCCCchhhHHHHHHHHHHHhhcCccccc
Q 004413 569 HGYLAPEYAMRG------HLTEKADVFSFGVAALEIISG----------RANSDNSLDMEKIYLLEWAWNLHENNQSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~------~~t~ksDVysfGvvllElltg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 632 (755)
.+|||||++... .--..+||||||.|+||+..+ +.||++..+.+.. + +-+++.+ -.+-
T Consensus 384 KRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs-~-eeMrkVV----Cv~~ 457 (513)
T KOG2052|consen 384 KRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPS-F-EEMRKVV----CVQK 457 (513)
T ss_pred eeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCC-H-HHHhcce----eecc
Confidence 469999998642 112468999999999999863 3455443222110 0 0001100 0111
Q ss_pred cCCCCC--CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 633 VDPTLT--EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 633 ~d~~l~--~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.|.+. -...+++..+.+++..||..+|..|-|.-.+-+.|.+....
T Consensus 458 ~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~ 506 (513)
T KOG2052|consen 458 LRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS 506 (513)
T ss_pred cCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence 223332 13457889999999999999999999999999888876654
|
|
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=129.76 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=60.0
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|||||++.+. .++.++|||||||+++||+||+.|+........ ...+...+.. .++.+.. .....
T Consensus 170 ~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~---~~~~~~~~~~------~~~~~~~---~~~~~ 237 (332)
T cd05614 170 IEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNT---QSEVSRRILK------CDPPFPS---FIGPE 237 (332)
T ss_pred ccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCC---HHHHHHHHhc------CCCCCCC---CCCHH
Confidence 579999998764 478999999999999999999999864322111 1111111111 1222211 12234
Q ss_pred HHHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 648 VIGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
+.++...|++.+|++|| ++.++++
T Consensus 238 ~~~li~~~l~~dp~~R~~~~~~~~~~~l~ 266 (332)
T cd05614 238 AQDLLHKLLRKDPKKRLGAGPQGASEIKE 266 (332)
T ss_pred HHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence 66788899999999999 5556653
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-11 Score=129.70 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=60.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++|++||+.|+........ ...+ ......+. .. ++......+
T Consensus 165 ~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~--~~~~-~~~~~~~~--~~-------~~~~~~~~~ 232 (285)
T cd05632 165 VGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVK--REEV-DRRVLETE--EV-------YSAKFSEEA 232 (285)
T ss_pred cCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH--HHHH-HHhhhccc--cc-------cCccCCHHH
Confidence 579999999999999999999999999999999999875433221 1111 11111111 00 111122356
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.+++..|++.+|++||++.
T Consensus 233 ~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05632 233 KSICKMLLTKDPKQRLGCQ 251 (285)
T ss_pred HHHHHHHccCCHhHcCCCc
Confidence 7888999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-11 Score=128.62 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=66.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch--hhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD--MEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+..++.++.++||||+||+++||+||+.|++.... .....+..|.... ....+ +.... .......
T Consensus 167 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~-~~~~~~~ 240 (287)
T cd06621 167 SFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNM----PNPEL-KDEPG-NGIKWSE 240 (287)
T ss_pred ccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcC----Cchhh-ccCCC-CCCchHH
Confidence 469999999999999999999999999999999999875421 1122233332221 11111 11110 0011234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++.+|++.+|++||||.||++
T Consensus 241 ~~~~li~~~l~~~p~~Rpt~~eil~ 265 (287)
T cd06621 241 EFKDFIKQCLEKDPTRRPTPWDMLE 265 (287)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHh
Confidence 6788999999999999999999986
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-11 Score=126.70 Aligned_cols=95 Identities=26% Similarity=0.335 Sum_probs=64.2
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCC--CHHH
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEF--NDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~--~~~~ 644 (755)
+.|||||+++. .-|+.|+|||||||..+||.+|..||..+.+... |. ..+ .+...- .+-...++ ...-
T Consensus 194 p~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkv--Ll----~tL-qn~pp~-~~t~~~~~d~~k~~ 265 (516)
T KOG0582|consen 194 PCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKV--LL----LTL-QNDPPT-LLTSGLDKDEDKKF 265 (516)
T ss_pred ccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHH--HH----HHh-cCCCCC-cccccCChHHhhhh
Confidence 46999999543 5799999999999999999999999987766432 11 111 122111 11001111 1112
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-..+.++.-.|++.||.+|||.++.++
T Consensus 266 ~ksf~e~i~~CL~kDP~kRptAskLlk 292 (516)
T KOG0582|consen 266 SKSFREMIALCLVKDPSKRPTASKLLK 292 (516)
T ss_pred cHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 235777888999999999999998863
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.9e-12 Score=134.43 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=61.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.+..++.++|||||||+++||+||+.|+....... ....+..+.. .+.. .....+
T Consensus 192 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-------~~~~i~~~~~------~~p~---~~~~~~ 255 (340)
T PTZ00426 192 PEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLL-------IYQKILEGII------YFPK---FLDNNC 255 (340)
T ss_pred hhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHH-------HHHHHhcCCC------CCCC---CCCHHH
Confidence 46999999999999999999999999999999999987543221 1112222211 0111 112245
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|++|+ ++.++.+
T Consensus 256 ~~li~~~l~~dp~~R~~~~~~~~~~~~~ 283 (340)
T PTZ00426 256 KHLMKKLLSHDLTKRYGNLKKGAQNVKE 283 (340)
T ss_pred HHHHHHHcccCHHHcCCCCCCCHHHHHc
Confidence 6788899999999995 7777753
|
|
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-11 Score=126.72 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++|+++|+.|+...... .+.+. ...+.. ...+......+
T Consensus 174 ~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~----~~~~~~--------~~~~~~~~~~~ 238 (265)
T cd08217 174 PYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQL---QLASK----IKEGKF--------RRIPYRYSSEL 238 (265)
T ss_pred CCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHH---HHHHH----HhcCCC--------CCCccccCHHH
Confidence 5699999999999999999999999999999999998754321 12221 122211 11223344577
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||+|.+|++
T Consensus 239 ~~l~~~~l~~~p~~Rp~~~~il~ 261 (265)
T cd08217 239 NEVIKSMLNVDPDKRPSTEELLQ 261 (265)
T ss_pred HHHHHHHccCCcccCCCHHHHhh
Confidence 88999999999999999999986
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-11 Score=129.80 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=61.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-------hhc----C----ccccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-------HEN----N----QSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-------~~~----~----~~~~~ 632 (755)
..|+|||++.+ ..++.++|||||||+++||+||+.|+........ +....... +.. . .....
T Consensus 165 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (285)
T cd07861 165 LWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQ--LFRIFRILGTPTEDVWPGVTSLPDYKNTFPKW 242 (285)
T ss_pred ccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHHhCCCChhhhhcchhhHHHHhhcccc
Confidence 46999998865 4579999999999999999999999875432211 11100000 000 0 00000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.........++.+++..|++.+|.+|||+.+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~ 281 (285)
T cd07861 243 KKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN 281 (285)
T ss_pred CcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence 001110001112235568999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-11 Score=128.65 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=68.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.++|||||||+++||+| |+.|+......+ +.. . ...+... +.+......
T Consensus 175 ~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~---~~~---~-~~~~~~~--------~~~~~~~~~ 239 (270)
T cd05047 175 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYE---K-LPQGYRL--------EKPLNCDDE 239 (270)
T ss_pred cccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHH---HHH---H-HhCCCCC--------CCCCcCCHH
Confidence 36999999999999999999999999999997 999986543221 111 1 1111100 111122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|.+||++.+++.+|+..
T Consensus 240 ~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 240 VYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred HHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 78999999999999999999999999764
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-11 Score=130.35 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=63.0
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhcC-ccccccCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHENN-QSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~~-~~~~~~d~~l~ 638 (755)
..|+|||++.+ ..++.++|||||||+++||+||+.|+......+........ |..+... .....-.+...
T Consensus 168 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (309)
T cd07872 168 LWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYK 247 (309)
T ss_pred ccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccC
Confidence 35999998865 56899999999999999999999998765433322211111 0000000 00000000000
Q ss_pred -----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 -----EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 -----~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.........+.++..+|++.+|.+|||+.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~ 285 (309)
T cd07872 248 PQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK 285 (309)
T ss_pred CCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence 000111234568999999999999999999975
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=128.73 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++. +..++.++|||||||++|||++|+.|+......+. ... ... +....+.. +..
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~--~~~----~~~-~~~~~~~~------~~~ 233 (282)
T cd06643 167 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRV--LLK----IAK-SEPPTLAQ------PSR 233 (282)
T ss_pred ccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHH--HHH----Hhh-cCCCCCCC------ccc
Confidence 4699999974 45678899999999999999999999865432211 111 111 11011111 111
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++..||+.+|.+||++.++++
T Consensus 234 ~~~~~~~li~~~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 234 WSSEFKDFLKKCLEKNVDARWTTTQLLQ 261 (282)
T ss_pred cCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 2235678889999999999999998864
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-11 Score=126.70 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=65.1
Q ss_pred ccccchhhhh-cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHH-HhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAM-RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN-LHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~-~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+.. ....+.++||||+|++++||++|+.|+......+.......... .... .. ........
T Consensus 162 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~ 231 (260)
T PF00069_consen 162 PEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPS----SS------QQSREKSE 231 (260)
T ss_dssp GGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHH----HT------TSHTTSHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccc----cc------cccchhHH
Confidence 4699999998 89999999999999999999999999886532222222211111 0000 00 00001126
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.++...|++.+|++||+|.++++
T Consensus 232 ~l~~li~~~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 232 ELRDLIKKMLSKDPEQRPSAEELLK 256 (260)
T ss_dssp HHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred HHHHHHHHHccCChhHCcCHHHHhc
Confidence 7888999999999999999999974
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-11 Score=124.17 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=62.9
Q ss_pred ccccchhhhhcCC--CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGH--LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~--~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+..... ++.|+|||||||+++|+++|+.|+......+. ...... ......+++.. ..+...
T Consensus 174 ~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~-~~~~~~~~~~~---~~~~~~ 243 (272)
T cd06629 174 VFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAA------MFKLGN-KRSAPPIPPDV---SMNLSP 243 (272)
T ss_pred ccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHH------HHHhhc-cccCCcCCccc---cccCCH
Confidence 4699999987654 89999999999999999999999864322111 111111 11111111111 112234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++..|++.+|++||+|.+|++
T Consensus 244 ~~~~li~~~l~~~p~~Rps~~~il~ 268 (272)
T cd06629 244 VALDFLNACFTINPDNRPTARELLQ 268 (272)
T ss_pred HHHHHHHHHhcCChhhCCCHHHHhh
Confidence 6777889999999999999999975
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-11 Score=128.38 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=62.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||++|+.|+............ ....... . ... +......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~---~~~~~~~--~----~~~---~~~~~~~~ 232 (285)
T cd05630 165 VGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEV---ERLVKEV--Q----EEY---SEKFSPDA 232 (285)
T ss_pred ccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHH---Hhhhhhh--h----hhc---CccCCHHH
Confidence 4799999999999999999999999999999999998754321111111 1111100 0 001 11122346
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~~ 671 (755)
.+++..|++.+|++||+ +.|+.+
T Consensus 233 ~~li~~~l~~~p~~R~s~~~~~~~~~~~ 260 (285)
T cd05630 233 RSLCKMLLCKDPKERLGCQGGGAREVKE 260 (285)
T ss_pred HHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence 67889999999999999 677764
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-11 Score=128.02 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=60.9
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++. .+.++.++|||||||+++|+++|+.|+........ + .... .... ..+...+ .....
T Consensus 170 ~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~--~----~~~~-~~~~---~~~~~~~-~~~~~ 238 (267)
T cd06645 170 PYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA--L----FLMT-KSNF---QPPKLKD-KMKWS 238 (267)
T ss_pred ccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh--H----Hhhh-ccCC---CCCcccc-cCCCC
Confidence 4699999874 56689999999999999999999999754332211 1 1111 1111 1111110 00112
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++..|++.+|++||++.+|++
T Consensus 239 ~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 239 NSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred HHHHHHHHHHccCCchhCcCHHHHhc
Confidence 34678899999999999999999864
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-11 Score=133.94 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---cccccCCCC--------
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---SLGLVDPTL-------- 637 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~d~~l-------- 637 (755)
.|+|||++.+ ..++.++|||||||+++||+||+.|+....... ...++...+.... ...+.+...
T Consensus 174 ~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (336)
T cd07849 174 WYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLH---QLNLILGVLGTPSQEDLNCIISLRARNYIKSLP 250 (336)
T ss_pred CccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcC
Confidence 4999998755 568999999999999999999999986533211 1111111111100 000111000
Q ss_pred --CCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--Hhcc
Q 004413 638 --TEFN-----DKEALRVIGVALLCTQASPMMRPPMSRVVAM--LAGD 676 (755)
Q Consensus 638 --~~~~-----~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~--L~~~ 676 (755)
...+ .....++.+++.+|++.+|++||++.|+++. ++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~ 298 (336)
T cd07849 251 FKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQY 298 (336)
T ss_pred cCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCcccccc
Confidence 0000 1123457889999999999999999999863 5443
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-11 Score=128.92 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---c-----ccccCCC-CC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---S-----LGLVDPT-LT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~-----~~~~d~~-l~ 638 (755)
..|+|||.+.+ ..++.++||||+||+++||+||+.|+....... ...+.+........ . ....++. ..
T Consensus 167 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (303)
T cd07869 167 LWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQ--DQLERIFLVLGTPNEDTWPGVHSLPHFKPERFT 244 (303)
T ss_pred CCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHH--HHHHHHHHHhCCCChhhccchhhcccccccccc
Confidence 35999998865 568999999999999999999999997543221 11111111111000 0 0000110 00
Q ss_pred CCCH---H-------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFND---K-------EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~---~-------~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.... . ....+.+++..|++.+|.+|||+.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~ 287 (303)
T cd07869 245 LYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS 287 (303)
T ss_pred ccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence 0000 0 1134567889999999999999999874
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=130.14 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=62.5
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc---Ccccccc------CCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN---NQSLGLV------DPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~------d~~l~ 638 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+...... .....++ .....
T Consensus 168 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
T cd07873 168 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQ---LHFIFRILGTPTEETWPGILSNEEFKSYNYP 244 (301)
T ss_pred ecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHcCCCChhhchhhhccccccccccC
Confidence 45999998865 4588999999999999999999999875543221 1111111100 0000000 00000
Q ss_pred CC--------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EF--------NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~--------~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. .......+.++...|++.+|.+|||+.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~ 285 (301)
T cd07873 245 KYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK 285 (301)
T ss_pred ccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 00 0111234678999999999999999999985
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-11 Score=130.47 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=34.7
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
..|+|||++.+ ..++.++||||+||+++||+||+.|+..
T Consensus 179 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~ 218 (317)
T cd07868 179 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred ccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccC
Confidence 45999999876 4589999999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-11 Score=126.17 Aligned_cols=88 Identities=17% Similarity=0.330 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+...+.++.++|||||||+++||+||+.|+........ + ... .. ...+.+ +......+
T Consensus 176 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~----~~~-~~-----~~~~~~---~~~~~~~~ 240 (267)
T cd06628 176 VFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQA--I----FKI-GE-----NASPEI---PSNISSEA 240 (267)
T ss_pred cCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHH--H----HHH-hc-----cCCCcC---CcccCHHH
Confidence 469999999999999999999999999999999999875432111 0 110 01 111222 22233466
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...||+.+|.+||++.||++
T Consensus 241 ~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 241 IDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred HHHHHHHccCCchhCcCHHHHhh
Confidence 77888999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-11 Score=134.76 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=34.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSD 606 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~ 606 (755)
.+|||||++.+..++.++|||||||+||||++|+.++.
T Consensus 326 ~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf 363 (461)
T PHA03211 326 VDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF 363 (461)
T ss_pred cCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence 46999999999999999999999999999999887653
|
|
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-11 Score=128.36 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=61.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++||+||+.|+......+. ......-. ....-|.... ....+
T Consensus 194 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~------~~~i~~~~--~~~~~p~~~~----~~~~~ 261 (350)
T cd05573 194 PDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQET------YNKIINWK--ESLRFPPDPP----VSPEA 261 (350)
T ss_pred ccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHH------HHHHhccC--CcccCCCCCC----CCHHH
Confidence 569999999999999999999999999999999999876543221 11111100 0000011111 12345
Q ss_pred HHHHHHhcccCCCCCCC-HHHHHH
Q 004413 649 IGVALLCTQASPMMRPP-MSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-m~~v~~ 671 (755)
.++...|++ +|.+||+ +.++++
T Consensus 262 ~~li~~ll~-dp~~R~~s~~~ll~ 284 (350)
T cd05573 262 IDLICRLLC-DPEDRLGSFEEIKS 284 (350)
T ss_pred HHHHHHHcc-ChhhcCCCHHHHhc
Confidence 667778997 9999999 999975
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-11 Score=130.44 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=71.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
..|+|||+.....++.|+||||||++++||+||+.|+...... ......+...........+.++... ...+......
T Consensus 174 ~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T cd05080 174 VFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKK-FEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQE 252 (283)
T ss_pred ceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcch-hhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHH
Confidence 3599999999999999999999999999999999997543211 0111111110000011111122111 1122334567
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|++||+|.+|+++|+..
T Consensus 253 ~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 253 VYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred HHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 88899999999999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-11 Score=129.42 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=60.9
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++. ...++.++|||||||++|||+||+.|+....... ...... ... .+.+ ..+..
T Consensus 174 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~------~~~~~~-~~~-----~~~~-~~~~~ 240 (292)
T cd06644 174 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR------VLLKIA-KSE-----PPTL-SQPSK 240 (292)
T ss_pred ccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH------HHHHHh-cCC-----CccC-CCCcc
Confidence 4699999874 4557889999999999999999999976433211 111111 111 1111 01112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++..|++.+|++||++.+|++
T Consensus 241 ~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 241 WSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred cCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 2345778899999999999999999964
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-11 Score=132.67 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=59.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+....... +...+ . .+.. . ++......+
T Consensus 165 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~---~~~~i---~-~~~~------~---~p~~~~~~~ 228 (323)
T cd05615 165 PDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE---LFQSI---M-EHNV------S---YPKSLSKEA 228 (323)
T ss_pred ccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHH---HHHHH---H-hCCC------C---CCccCCHHH
Confidence 46999999999999999999999999999999999987643321 22111 1 1111 1 111223456
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.++..+|++.+|.+|++..
T Consensus 229 ~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 229 VSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred HHHHHHHcccCHhhCCCCC
Confidence 7788999999999999853
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-11 Score=125.13 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=63.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+..++.++|||||||+++|++||+.|+......... . ..... . ...+.+ +......+
T Consensus 172 ~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~--~----~~~~~---~-~~~~~~---~~~~~~~~ 238 (265)
T cd06631 172 PYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAM--F----YIGAH---R-GLMPRL---PDSFSAAA 238 (265)
T ss_pred ccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHH--H----Hhhhc---c-CCCCCC---CCCCCHHH
Confidence 4699999999999999999999999999999999998754322211 0 00000 0 011112 11223456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++.+|++.+|++||+|.||..
T Consensus 239 ~~~i~~~l~~~p~~Rp~~~~~l~ 261 (265)
T cd06631 239 IDFVTSCLTRDQHERPSALQLLR 261 (265)
T ss_pred HHHHHHHhcCCcccCCCHHHHhc
Confidence 77889999999999999999864
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-11 Score=127.74 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=63.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.|+|||||||+++||++|+.|+......+. .... ..... +... ........+
T Consensus 181 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~---~~~~----~~~~~-----~~~~-~~~~~~~~l 247 (297)
T cd06659 181 PYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQA---MKRL----RDSPP-----PKLK-NAHKISPVL 247 (297)
T ss_pred ccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHH----hccCC-----CCcc-ccCCCCHHH
Confidence 369999999999999999999999999999999999875433221 1111 11110 0000 001112346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+||++.+|++
T Consensus 248 ~~~i~~~l~~~P~~Rps~~~ll~ 270 (297)
T cd06659 248 RDFLERMLTREPQERATAQELLD 270 (297)
T ss_pred HHHHHHHhcCCcccCcCHHHHhh
Confidence 67888999999999999999987
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-11 Score=129.08 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=62.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||+..+..++.++|||||||+++|++||+.|+........ .......+ .+.+ ..+......+.
T Consensus 180 ~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~------~~~~~~~~------~~~~-~~~~~~~~~~~ 246 (297)
T cd06656 180 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA------LYLIATNG------TPEL-QNPERLSAVFR 246 (297)
T ss_pred cccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchh------eeeeccCC------CCCC-CCccccCHHHH
Confidence 59999999999999999999999999999999999865332110 00000000 0011 11122234466
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++..|++.+|++||+|.+|++
T Consensus 247 ~li~~~l~~~p~~Rps~~~il~ 268 (297)
T cd06656 247 DFLNRCLEMDVDRRGSAKELLQ 268 (297)
T ss_pred HHHHHHccCChhhCcCHHHHhc
Confidence 7889999999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-11 Score=126.51 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=62.1
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+...+. ++.++|||||||++|||++|+.|+....... +... ... ...+.+.. ......
T Consensus 165 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~------~~~~-~~~-----~~~~~~~~--~~~~~~ 230 (277)
T cd06917 165 PYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR------AMML-IPK-----SKPPRLED--NGYSKL 230 (277)
T ss_pred cceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh------hhhc-ccc-----CCCCCCCc--ccCCHH
Confidence 4599999987654 6899999999999999999999987543221 1110 111 11112211 012346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++||++.|++.
T Consensus 231 ~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 231 LREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred HHHHHHHHcCCCcccCcCHHHHhh
Confidence 778889999999999999999975
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-11 Score=124.92 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=64.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.|+||||||++++|+++|+.|+..... .+...... .+. .+ ..+......+
T Consensus 169 ~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~------~~~~~~~~-~~~-----~~---~~~~~~~~~~ 233 (260)
T cd08222 169 PYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF------LSVVLRIV-EGP-----TP---SLPETYSRQL 233 (260)
T ss_pred cCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH------HHHHHHHH-cCC-----CC---CCcchhcHHH
Confidence 469999999888899999999999999999999999864321 11111111 111 11 1122334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||++.|+++
T Consensus 234 ~~li~~~l~~~p~~Rp~~~~il~ 256 (260)
T cd08222 234 NSIMQSMLNKDPSLRPSAAEILR 256 (260)
T ss_pred HHHHHHHhcCChhhCcCHHHHhh
Confidence 78999999999999999999975
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-11 Score=126.63 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=62.6
Q ss_pred ccccchhhhhcCC------CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 569 HGYLAPEYAMRGH------LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~~~------~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
.+|+|||++.+.. ++.++|||||||+++|++||+.|+....... ...-. ... .+......+.
T Consensus 165 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~~-~~~--------~~~~~~~~~~ 232 (286)
T cd06622 165 QSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN---IFAQL-SAI--------VDGDPPTLPS 232 (286)
T ss_pred cCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh---HHHHH-HHH--------hhcCCCCCCc
Confidence 4799999986544 4889999999999999999999986532211 11111 111 1111112223
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+.+++..|++.+|++||++.+++.
T Consensus 233 ~~~~~~~~li~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 233 GYSDDAQDFVAKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred ccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence 34456778899999999999999999875
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-11 Score=128.65 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=61.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+........ ........ ..... .++......+
T Consensus 161 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~--~~~~~~~~---------~~~~~-~~~~~~~~~~ 228 (280)
T cd05608 161 PGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKELKQRI---------LNDSV-TYPDKFSPAS 228 (280)
T ss_pred cCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchh--HHHHHHhh---------cccCC-CCcccCCHHH
Confidence 579999999999999999999999999999999999865322110 00111111 11111 1122233457
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~ 670 (755)
.+++..|++.+|++|| ++.++.
T Consensus 229 ~~li~~~l~~~P~~R~~~~~~~~~~~l 255 (280)
T cd05608 229 KSFCEALLAKDPEKRLGFRDGNCDGLR 255 (280)
T ss_pred HHHHHHHhcCCHHHhcCCCCCCHHHHh
Confidence 7888999999999999 555555
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-11 Score=130.49 Aligned_cols=89 Identities=24% Similarity=0.404 Sum_probs=64.2
Q ss_pred ccccchhhhhcC-----------CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 569 HGYLAPEYAMRG-----------HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~-----------~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
+-||+||.+... +++.||||||+||+||+|+-||.|+..... .|+. +..+.||.-
T Consensus 525 ~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n-------~~aK-------l~aI~~P~~ 590 (677)
T KOG0596|consen 525 VNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN-------QIAK-------LHAITDPNH 590 (677)
T ss_pred ccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH-------HHHH-------HHhhcCCCc
Confidence 569999987643 367899999999999999999999853211 1221 344667743
Q ss_pred -CCCCH-HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 -TEFND-KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 -~~~~~-~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-+++. ..-.+++++|..|++.||.+||+..++++
T Consensus 591 ~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 591 EIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred cccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 12221 11223889999999999999999999874
|
|
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-11 Score=129.39 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=62.1
Q ss_pred ccccchhhhhcCC----CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAMRGH----LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~~~----~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
.+|+|||++.... ++.|+|||||||+++||++|+.|+....... +......... .. .+.. ....
T Consensus 178 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~~~~~~~~-~~-----~~~~-~~~~ 245 (296)
T cd06618 178 AAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEF-----EVLTKILQEE-PP-----SLPP-NEGF 245 (296)
T ss_pred ccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHH-----HHHHHHhcCC-CC-----CCCC-CCCC
Confidence 4799999987554 8999999999999999999999986432211 1111111111 11 1100 0112
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++.+++.+|++.+|++||++.++++
T Consensus 246 ~~~l~~li~~~l~~~p~~Rp~~~~il~ 272 (296)
T cd06618 246 SPDFCSFVDLCLTKDHRKRPKYRELLQ 272 (296)
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 346788899999999999999999975
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-11 Score=126.70 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=61.9
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++.. ..++.|+|||||||+++|++||+.|+........ +.. . ..+. .+.+ ..+..
T Consensus 177 ~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~~----~-~~~~-----~~~~-~~~~~ 243 (275)
T cd06608 177 PYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRA--LFK----I-PRNP-----PPTL-KSPEN 243 (275)
T ss_pred ccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHH--HHH----h-hccC-----CCCC-Cchhh
Confidence 46999998753 4578899999999999999999999864332211 111 1 1111 1111 11122
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.++..+|++.+|++|||+.||++
T Consensus 244 ~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 244 WSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred cCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 3456778999999999999999999975
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-11 Score=125.09 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=62.5
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+..... ++.++|||||||+++|+++|+.|+....... ............ ..+......
T Consensus 165 ~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~------~~~~~~~~~~~~--------~~~~~~~~~ 230 (258)
T cd06632 165 PYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVA------AVFKIGRSKELP--------PIPDHLSDE 230 (258)
T ss_pred cceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHH------HHHHHHhcccCC--------CcCCCcCHH
Confidence 3599999988776 9999999999999999999999987543211 111111111111 111122345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++..+|++.+|++||+|.+++.
T Consensus 231 ~~~li~~~l~~~p~~Rp~~~~~l~ 254 (258)
T cd06632 231 AKDFILKCLQRDPSLRPTAAELLE 254 (258)
T ss_pred HHHHHHHHhhcCcccCcCHHHHhc
Confidence 667889999999999999999874
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-11 Score=126.09 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=63.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||+..+..++.|+|||||||+++||++|+.|+...... .+.... ..+. .+.+. .+......+.
T Consensus 180 ~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~------~~~~~~-~~~~-----~~~~~-~~~~~~~~l~ 246 (285)
T cd06648 180 YWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPL------QAMKRI-RDNL-----PPKLK-NLHKVSPRLR 246 (285)
T ss_pred cccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHH------HHHHHH-HhcC-----CCCCc-ccccCCHHHH
Confidence 599999999889999999999999999999999998653321 112211 1111 11111 1111234678
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++.+|++.+|++||++.++++
T Consensus 247 ~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 247 SFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred HHHHHHcccChhhCcCHHHHcc
Confidence 8999999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-11 Score=128.28 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=61.7
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH---------h-hc-CccccccC--
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL---------H-EN-NQSLGLVD-- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~---------~-~~-~~~~~~~d-- 634 (755)
..|+|||+..+. .++.++|||||||+++||+||+.|++............|..-. + .. ....+...
T Consensus 167 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T cd07870 167 LWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPC 246 (291)
T ss_pred ccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcccc
Confidence 359999988753 5789999999999999999999998754432211111111000 0 00 00000000
Q ss_pred --CCCCCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 --PTLTEF--NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 --~~l~~~--~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+... .......+.+++.+|++.+|.+||||.|++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~ 287 (291)
T cd07870 247 KPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL 287 (291)
T ss_pred CCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence 000000 0011345667889999999999999999863
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-11 Score=132.43 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=62.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhH-HHHHHHHHHHhhcCc-----------------cc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEK-IYLLEWAWNLHENNQ-----------------SL 630 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~-~~l~~~~~~~~~~~~-----------------~~ 630 (755)
.+|+|||++....++.++|||||||+++||++|+.|+........ ..+.. +.+...... ..
T Consensus 251 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (392)
T PHA03207 251 LETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRS-IIRCMQVHPLEFPQNGSTNLCKHFKQYA 329 (392)
T ss_pred cCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHH-HHHHhccCccccCCccchhHHHHHHhhc
Confidence 469999999999999999999999999999999999865432211 11111 111110000 00
Q ss_pred cccCCCC--CCC--CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 GLVDPTL--TEF--NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 ~~~d~~l--~~~--~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.. .+. .......+..+...|++.+|++||++.|++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~ 374 (392)
T PHA03207 330 IVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILS 374 (392)
T ss_pred ccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhh
Confidence 0000000 000 0001234556788999999999999999975
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=134.74 Aligned_cols=110 Identities=26% Similarity=0.480 Sum_probs=100.1
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
.++.|+|++|.+.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCC-CCCCeeecCCCCCCC
Q 004413 103 GNSFQGPIPSSLSKL-ASLDSLRISDIYNVS 132 (755)
Q Consensus 103 ~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~ 132 (755)
+|.++|.+|..+..+ .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999988764 467888888876543
|
|
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-11 Score=130.23 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=61.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH----------hhcCccccccCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL----------HENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~d~~l 637 (755)
..|+|||++.+ ..++.++|||||||+++||++|+.|+......+. +..+.... +........+ ..+
T Consensus 179 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 255 (343)
T cd07878 179 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQ--LKRIMEVVGTPSPEVLKKISSEHARKYI-QSL 255 (343)
T ss_pred ccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHHhCCCCHHHHHhcchhhHHHHh-hcc
Confidence 45999999876 5789999999999999999999999865332111 11111000 0000000000 000
Q ss_pred CCCCHH--------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDK--------EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~--------~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.. ....+.++...|++.+|.+|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~ 297 (343)
T cd07878 256 PHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA 297 (343)
T ss_pred ccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 001111 1123668899999999999999999974
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-11 Score=125.35 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH-HHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK-EALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~-~~~~ 647 (755)
.+|+|||+..+..++.++||||||++++|++||+.|+...... .....+.+...... . -+.+ +.. ....
T Consensus 163 ~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~-~-----~~~~---~~~~~~~~ 232 (265)
T cd06605 163 SSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDP-PDGIFELLQYIVNE-P-----PPRL---PSGKFSPD 232 (265)
T ss_pred hhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccc-cccHHHHHHHHhcC-C-----CCCC---ChhhcCHH
Confidence 4799999999999999999999999999999999998654211 11122222222211 1 0111 111 2345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|+..+|++||++.+++.
T Consensus 233 ~~~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 233 FQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred HHHHHHHHcCCCchhCcCHHHHhh
Confidence 778889999999999999999974
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-11 Score=123.67 Aligned_cols=91 Identities=20% Similarity=0.335 Sum_probs=62.2
Q ss_pred ccccchhhhhcCC---CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGH---LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~---~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++.... .+.++||||||++++|+++|+.|+........ . ..... .+ ..+.+... ....
T Consensus 167 ~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~--~---~~~~~-~~-----~~~~~~~~-~~~~ 234 (264)
T cd06626 167 PAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQ--I---MFHVG-AG-----HKPPIPDS-LQLS 234 (264)
T ss_pred cCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHH--H---HHHHh-cC-----CCCCCCcc-cccC
Confidence 4799999998776 89999999999999999999999865432111 1 11110 01 11112111 1113
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++...|++.+|++||++.|++.
T Consensus 235 ~~~~~li~~~l~~~p~~R~~~~~i~~ 260 (264)
T cd06626 235 PEGKDFLDRCLESDPKKRPTASELLQ 260 (264)
T ss_pred HHHHHHHHHHccCCcccCCCHHHHhc
Confidence 44567888999999999999999864
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=123.44 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=36.2
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
.+|||||++.+ +.++.++|||||||+|+||+||+.|+....
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~ 212 (331)
T cd05624 167 PDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES 212 (331)
T ss_pred cccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCC
Confidence 57999999875 578999999999999999999999987543
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-11 Score=126.96 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=63.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|++||+.....++.|+|||||||+++|++||+.|+........ ...+ .........+ .......+
T Consensus 180 ~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~--~~~~-----~~~~~~~~~~------~~~~~~~l 246 (286)
T cd06614 180 PYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRA--LFLI-----TTKGIPPLKN------PEKWSPEF 246 (286)
T ss_pred cccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHH--HHHH-----HhcCCCCCcc------hhhCCHHH
Confidence 359999999988999999999999999999999999865433221 1111 1111111111 11123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|.+||++.+|++
T Consensus 247 ~~li~~~l~~~p~~Rpt~~~il~ 269 (286)
T cd06614 247 KDFLNKCLVKDPEKRPSAEELLQ 269 (286)
T ss_pred HHHHHHHhccChhhCcCHHHHhh
Confidence 78999999999999999999975
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-11 Score=123.62 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.|+|||||||+++|++||+.|+..... +...+..|..... . .. .........+
T Consensus 170 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~~--~--------~~-~~~~~~~~~~ 237 (267)
T PHA03390 170 LDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED-EELDLESLLKRQQ--K--------KL-PFIKNVSKNA 237 (267)
T ss_pred CcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc-chhhHHHHHHhhc--c--------cC-CcccccCHHH
Confidence 469999999999999999999999999999999999874432 2223333333221 0 00 0111223356
Q ss_pred HHHHHHhcccCCCCCCC-HHHHH
Q 004413 649 IGVALLCTQASPMMRPP-MSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-m~~v~ 670 (755)
.++...|++.+|.+||+ +.|++
T Consensus 238 ~~li~~~l~~~p~~R~~~~~~~l 260 (267)
T PHA03390 238 NDFVQSMLKYNINYRLTNYNEII 260 (267)
T ss_pred HHHHHHHhccChhhCCchHHHHh
Confidence 77888999999999995 68776
|
|
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-11 Score=126.75 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=62.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||+...+.++.++|||||||++||+++|+.|+........ +......+. +.. ..+......+.
T Consensus 180 ~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~------~~~~~~~~~------~~~-~~~~~~~~~l~ 246 (293)
T cd06647 180 YWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA------LYLIATNGT------PEL-QNPEKLSAIFR 246 (293)
T ss_pred hhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh------eeehhcCCC------CCC-CCccccCHHHH
Confidence 49999999888999999999999999999999999875432211 000011110 001 01112234566
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++..||+.+|++||++.+++.
T Consensus 247 ~li~~~l~~~p~~Rp~~~~il~ 268 (293)
T cd06647 247 DFLNRCLEMDVEKRGSAKELLQ 268 (293)
T ss_pred HHHHHHccCChhhCcCHHHHhc
Confidence 7889999999999999999985
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-11 Score=127.52 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH----------hhc-----Cccccc
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL----------HEN-----NQSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~----------~~~-----~~~~~~ 632 (755)
.+|+|||+..+.+ ++.++|||||||+++||+||+.|+....... .+....... ... ......
T Consensus 164 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (284)
T cd07860 164 LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID--QLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKW 241 (284)
T ss_pred ccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHhCCCChhhhhhhhHHHHHHhhcccc
Confidence 3699999876644 6899999999999999999999986433211 111111100 000 000000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+........+.++...|++.+|++||+|.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~ 280 (284)
T cd07860 242 ARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA 280 (284)
T ss_pred cccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence 000010000111234567899999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-11 Score=122.89 Aligned_cols=92 Identities=17% Similarity=0.338 Sum_probs=64.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+.....++.++||||+|++++|+++|+.|+........ ........... .. .+.+......+
T Consensus 172 ~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~-----~~---~~~~~~~~~~~ 240 (268)
T cd06630 172 IAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNH---LALIFKIASAT-----TA---PSIPEHLSPGL 240 (268)
T ss_pred cceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcch---HHHHHHHhccC-----CC---CCCchhhCHHH
Confidence 369999999888999999999999999999999999864332111 11111111100 01 12223334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++||++.|+++
T Consensus 241 ~~~i~~~l~~~p~~R~~~~~ll~ 263 (268)
T cd06630 241 RDVTLRCLELQPEDRPPSRELLK 263 (268)
T ss_pred HHHHHHHcCCCcccCcCHHHHhc
Confidence 78999999999999999999873
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-11 Score=124.76 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=63.1
Q ss_pred ccccchhhhh-cCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHH---------HHHHHHhhcCccccccC---
Q 004413 569 HGYLAPEYAM-RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLL---------EWAWNLHENNQSLGLVD--- 634 (755)
Q Consensus 569 ~gy~aPE~~~-~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~---------~~~~~~~~~~~~~~~~d--- 634 (755)
..|+|||+.. ...++.++||||||++++||+||+.|+......+.. ... .|.............+.
T Consensus 162 ~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T cd07830 162 RWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFA 241 (283)
T ss_pred ccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccc
Confidence 4699999875 456899999999999999999999887654322211 000 11111111111110100
Q ss_pred -CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 -PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 -~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+........+.+++..|++.+|++||++.|++.
T Consensus 242 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~ 279 (283)
T cd07830 242 PTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ 279 (283)
T ss_pred cccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence 0000111111356889999999999999999999875
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-11 Score=124.43 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+...+.++||||||++++||++|+.|++.....+ .+.... .+..... +......+
T Consensus 165 ~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~------~~~~~~-~~~~~~~--------~~~~~~~~ 229 (256)
T cd08221 165 PYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN------LVVKIV-QGNYTPV--------VSVYSSEL 229 (256)
T ss_pred ccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHH-cCCCCCC--------ccccCHHH
Confidence 57999999998889999999999999999999999987543221 122221 2221111 12223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
.+++..|++.+|++||++.++++.
T Consensus 230 ~~~i~~~l~~~p~~R~s~~~ll~~ 253 (256)
T cd08221 230 ISLVHSLLQQDPEKRPTADEVLDQ 253 (256)
T ss_pred HHHHHHHcccCcccCCCHHHHhhC
Confidence 788899999999999999999864
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-11 Score=125.08 Aligned_cols=101 Identities=13% Similarity=0.067 Sum_probs=64.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc---------cccCCCC--
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL---------GLVDPTL-- 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~d~~l-- 637 (755)
..|+|||++....++.|+|||||||+++||+||+.|++.....+ .+..+.......+... .......
T Consensus 170 ~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (287)
T cd07838 170 LWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEAD--QLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPR 247 (287)
T ss_pred ccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHH--HHHHHHHHcCCCChHhcCCCcccchhhccccccc
Confidence 35999999999999999999999999999999988876543221 1222221111000000 0000000
Q ss_pred --CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 --TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 --~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+-...+.+++.+|++.+|++||+|.|+++
T Consensus 248 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~ 283 (287)
T cd07838 248 SFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ 283 (287)
T ss_pred chhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence 0111122355678999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-11 Score=122.77 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=66.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|++||++.+..++.++||||||++++|+++|+.|+......+ +.. ....+... ..+......+
T Consensus 165 ~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~~ 229 (256)
T cd08530 165 PHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD---LRY----KVQRGKYP--------PIPPIYSQDL 229 (256)
T ss_pred ccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH----HHhcCCCC--------CCchhhCHHH
Confidence 57999999999999999999999999999999999987544321 111 11112111 1222344568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+...|++.+|++||++.|+++
T Consensus 230 ~~li~~~l~~~p~~Rp~~~~~l~ 252 (256)
T cd08530 230 QNFIRSMLQVKPKLRPNCDKILA 252 (256)
T ss_pred HHHHHHHcCCCcccCCCHHHHhc
Confidence 88999999999999999999975
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-11 Score=130.15 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=65.1
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHHHH-------HHhhcCccc-------ccc
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEWAW-------NLHENNQSL-------GLV 633 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~~~-------~~~~~~~~~-------~~~ 633 (755)
.|+|||.+.. ..++.++|||||||+++||++|+.|+......+... +..... .....+... ...
T Consensus 173 ~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (337)
T cd07858 173 WYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTP 252 (337)
T ss_pred CccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCccc
Confidence 5999998765 568999999999999999999999986543221111 110000 000000000 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH--Hhc
Q 004413 634 DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAM--LAG 675 (755)
Q Consensus 634 d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~--L~~ 675 (755)
++............+.+++.+|++.+|++||++.|+++. ++.
T Consensus 253 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~ 296 (337)
T cd07858 253 RQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLAS 296 (337)
T ss_pred ccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhh
Confidence 111111111234567889999999999999999999863 544
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-11 Score=128.39 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=71.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....++.++|||||||+++||++ |+.|+......+ +.... ..+... +.+......
T Consensus 200 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~------~~~~~-~~~~~~--------~~~~~~~~~ 264 (334)
T cd05100 200 VKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE------LFKLL-KEGHRM--------DKPANCTHE 264 (334)
T ss_pred ceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHH------HHHHH-HcCCCC--------CCCCCCCHH
Confidence 35999999999999999999999999999999 888876543221 12111 111111 112223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+.+++..|++.+|++||+|.|+++.|+......
T Consensus 265 l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~ 297 (334)
T cd05100 265 LYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVT 297 (334)
T ss_pred HHHHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence 788999999999999999999999998876543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-11 Score=127.05 Aligned_cols=90 Identities=23% Similarity=0.353 Sum_probs=62.3
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++. .+.++.++|||||||+++||+||+.|+......+ +..... .+.. +... .....
T Consensus 175 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~------~~~~~~-~~~~-----~~~~--~~~~~ 240 (308)
T cd06634 175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS------ALYHIA-QNES-----PALQ--SGHWS 240 (308)
T ss_pred ccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH------HHHHHh-hcCC-----CCcC--ccccc
Confidence 4699999975 4678999999999999999999999976533221 111111 1111 1110 11223
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
..+.+++.+||+.+|++||++.+|+..
T Consensus 241 ~~~~~li~~cl~~~P~~Rp~~~~ll~~ 267 (308)
T cd06634 241 EYFRNFVDSCLQKIPQDRPTSEVLLKH 267 (308)
T ss_pred HHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence 456788999999999999999999864
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-11 Score=122.90 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=66.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH-HHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK-EALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~-~~~~ 647 (755)
..|+|||+..+..++.++||||||++++|++||+.|+..........+..++. .+.. +. .+.. ....
T Consensus 164 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~----~~~~-----~~---~~~~~~~~~ 231 (264)
T cd06623 164 VTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAIC----DGPP-----PS---LPAEEFSPE 231 (264)
T ss_pred ccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHh----cCCC-----CC---CCcccCCHH
Confidence 56999999999999999999999999999999999986543212222232222 1111 11 1112 3456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|++||++.|+++
T Consensus 232 l~~li~~~l~~~p~~R~~~~~ll~ 255 (264)
T cd06623 232 FRDFISACLQKDPKKRPSAAELLQ 255 (264)
T ss_pred HHHHHHHHccCChhhCCCHHHHHh
Confidence 778899999999999999999986
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-11 Score=125.83 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=62.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||+.....++.++|||||||+++|+++|+.|+......... . .... .+.+.+.. .......+.
T Consensus 183 ~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~--~-----~~~~-----~~~~~~~~-~~~~~~~~~ 249 (292)
T cd06658 183 YWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAM--R-----RIRD-----NLPPRVKD-SHKVSSVLR 249 (292)
T ss_pred cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--H-----HHHh-----cCCCcccc-ccccCHHHH
Confidence 599999999889999999999999999999999998754332211 0 1111 11121111 011122455
Q ss_pred HHHHHhcccCCCCCCCHHHHHH
Q 004413 650 GVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+...|++.+|.+|||+.|+++
T Consensus 250 ~li~~~l~~~P~~Rpt~~~il~ 271 (292)
T cd06658 250 GFLDLMLVREPSQRATAQELLQ 271 (292)
T ss_pred HHHHHHccCChhHCcCHHHHhh
Confidence 6788899999999999999986
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-10 Score=122.83 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=63.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHH----HHH---HhhcCc-cccccCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEW----AWN---LHENNQ-SLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~----~~~---~~~~~~-~~~~~d~~l~ 638 (755)
..|+|||+..+ ..++.|+|||||||+++||+||+.|+......+... +... +.. .+.... ......+...
T Consensus 164 ~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (286)
T cd07847 164 RWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPE 243 (286)
T ss_pred cccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcc
Confidence 35999999875 568999999999999999999999987544332211 1110 000 000000 0000111110
Q ss_pred -CCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 -EFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 -~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+. .....+.++...|++.+|++||++.|++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~ 282 (286)
T cd07847 244 TREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE 282 (286)
T ss_pred cccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence 0011 11245778999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-11 Score=127.84 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=63.2
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
+.|||||+.+ +..|..|+|||||||.|.||.-+.+|-....++.. +. + +. ..-.|.+. .|..
T Consensus 194 PYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRV--ll----K-ia-----KSePPTLl-qPS~ 260 (1187)
T KOG0579|consen 194 PYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV--LL----K-IA-----KSEPPTLL-QPSH 260 (1187)
T ss_pred cccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHH--HH----H-Hh-----hcCCCccc-Ccch
Confidence 5699999875 57899999999999999999999999765443321 11 1 11 11123331 1233
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-...+-++...|+..+|+.||+.+++++
T Consensus 261 Ws~~F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 261 WSRSFSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred hhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence 3445667778999999999999988864
|
|
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-11 Score=124.27 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=67.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh--CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS--GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt--g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+...+.++.++|||||||+++||+| |..|+......+ ....+...+......... ..+.....
T Consensus 195 ~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 266 (295)
T cd05097 195 IRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ---VIENTGEFFRNQGRQIYL-----SQTPLCPS 266 (295)
T ss_pred eeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHH---HHHHHHHhhhhccccccC-----CCCCCCCH
Confidence 46999999999999999999999999999998 455665433222 222222222211110000 01112234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+.+++.+||+.+|++||+|.+|++.|+
T Consensus 267 ~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 267 PVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 7889999999999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-11 Score=124.23 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=65.2
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh-----------cCccccccCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE-----------NNQSLGLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~d~~ 636 (755)
..|+|||++.. +.++.++|||||||+++||++|+.|+......+ .+.+...... .........+.
T Consensus 162 ~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (282)
T cd07831 162 RWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELD---QIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPS 238 (282)
T ss_pred cccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHH---HHHHHHHHcCCCCHHHHHhhcccccccccCcc
Confidence 46999997654 567999999999999999999999986543322 2233222111 11111111111
Q ss_pred C-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 L-----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 l-----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. ..........+.+++..|++.+|++||++.++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 278 (282)
T cd07831 239 KKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR 278 (282)
T ss_pred cccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence 1 0011123467888999999999999999999875
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-11 Score=129.67 Aligned_cols=183 Identities=35% Similarity=0.521 Sum_probs=88.8
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCc-cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLA-KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+.+++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 333455555555555554 3444444442 5555555555553 23334455555555555555555 344443345555
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCC
Q 004413 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176 (755)
Q Consensus 97 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 176 (755)
+.|++++|++. .+|.....+..|++|.+++|.. ...+..+.++.++..|.+.+|++. .++..+..+++|+.|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 55555555555 4444433444455555555431 112223444445555555555544 22444455555555555555
Q ss_pred CCCCCCcccccCCCCCCEEEccCCcCCCCCCc
Q 004413 177 NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT 208 (755)
Q Consensus 177 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 208 (755)
.++. ++. +..+.+|+.|++++|.++...+.
T Consensus 266 ~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccc-ccc-ccccCccCEEeccCccccccchh
Confidence 5552 222 55555555555555555544443
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.7e-11 Score=131.39 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=70.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.+..++.|+|||||||++|||++ |+.|+........ .......+... ..+......
T Consensus 303 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~------~~~~~~~~~~~--------~~~~~~~~~ 368 (400)
T cd05105 303 VKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST------FYNKIKSGYRM--------AKPDHATQE 368 (400)
T ss_pred cceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH------HHHHHhcCCCC--------CCCccCCHH
Confidence 46999999999999999999999999999997 8899865432211 11122222110 112233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..||+.+|++||+|.+|+++|+...
T Consensus 369 l~~li~~cl~~dP~~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 369 VYDIMVKCWNSEPEKRPSFLHLSDIVESLL 398 (400)
T ss_pred HHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence 788999999999999999999999998643
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-11 Score=122.24 Aligned_cols=88 Identities=14% Similarity=0.234 Sum_probs=60.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||......++.++|||||||+++|+++|+.|+........ + ....... ..+ ..+......+
T Consensus 173 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~--~----~~~~~~~-----~~~---~~~~~~~~~~ 238 (265)
T cd06652 173 PYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAA--I----FKIATQP-----TNP---VLPPHVSDHC 238 (265)
T ss_pred ccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHH--H----HHHhcCC-----CCC---CCchhhCHHH
Confidence 469999999888999999999999999999999999864322111 1 1111100 011 1222333455
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+...|+. +|++||++.||++
T Consensus 239 ~~~i~~~l~-~p~~Rp~~~~il~ 260 (265)
T cd06652 239 RDFLKRIFV-EAKLRPSADELLR 260 (265)
T ss_pred HHHHHHHhc-ChhhCCCHHHHhc
Confidence 566677774 8999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-11 Score=125.30 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=60.9
Q ss_pred ccccchhhhhc----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAMR----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
..|+|||++.. ..++.++||||||++++||+||+.|+....... ..+. .... + ..+.+.. ...
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~----~~~~-~-----~~~~~~~--~~~ 233 (283)
T cd06617 167 KPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPF-QQLK----QVVE-E-----PSPQLPA--EKF 233 (283)
T ss_pred ccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCH-HHHH----HHHh-c-----CCCCCCc--ccc
Confidence 46999998864 456899999999999999999999986432111 1111 1111 1 1111110 011
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|++||++.+|++
T Consensus 234 ~~~l~~li~~~l~~~p~~Rp~~~~il~ 260 (283)
T cd06617 234 SPEFQDFVNKCLKKNYKERPNYPELLQ 260 (283)
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 245778899999999999999999975
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=124.99 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=58.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++....++.++|||||||+++||+||+.|+......+.. .+..|. ... . -+.....+. ++..
T Consensus 212 ~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~------~~~-~--~~~~~~~s~-~~~d 281 (381)
T cd05626 212 PNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWE------NTL-H--IPPQVKLSP-EAVD 281 (381)
T ss_pred ccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHccc------ccc-C--CCCCCCCCH-HHHH
Confidence 4699999999899999999999999999999999999764432211 111110 000 0 011111222 2222
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+++- +.|...+|..||++.|+..
T Consensus 282 li~~-ll~~~~~~~~R~~~~~~l~ 304 (381)
T cd05626 282 LITK-LCCSAEERLGRNGADDIKA 304 (381)
T ss_pred HHHH-HccCcccccCCCCHHHHhc
Confidence 2221 2477888888999999975
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-11 Score=125.74 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=64.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|||||+.....|..|.||||+||+.+||+-|..||-...+-.. .+....+|. |.+.. ++.-...+
T Consensus 433 PYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrA------lyLIa~ng~------P~lk~-~~klS~~~ 499 (550)
T KOG0578|consen 433 PYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA------LYLIATNGT------PKLKN-PEKLSPEL 499 (550)
T ss_pred CCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHH------HHHHhhcCC------CCcCC-ccccCHHH
Confidence 569999999999999999999999999999999999875433221 111122222 22211 11122345
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-+...+|++.|+++||++.|+++
T Consensus 500 kdFL~~cL~~dv~~RasA~eLL~ 522 (550)
T KOG0578|consen 500 KDFLDRCLVVDVEQRASAKELLE 522 (550)
T ss_pred HHHHHHHhhcchhcCCCHHHHhc
Confidence 55677999999999999999874
|
|
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.7e-11 Score=124.15 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=61.4
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------cccccCCC-CCC-
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------SLGLVDPT-LTE- 639 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~d~~-l~~- 639 (755)
..|+|||++.+.. ++.++|||||||+++||+||+.|+......+. ..+.......... ..+..+.. ...
T Consensus 163 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (284)
T cd07839 163 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEESWPGVSKLPDYKPYPMY 240 (284)
T ss_pred cCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHH--HHHHHHHHhCCCChHHhHHhhhcccccccCCC
Confidence 4699999987654 69999999999999999999998654332211 1111111100000 00011100 000
Q ss_pred --------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 --------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 --------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
........+.++...|++.+|.+|||+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~ 280 (284)
T cd07839 241 PATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ 280 (284)
T ss_pred CCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence 01112345678999999999999999999864
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-11 Score=125.96 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=62.7
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC-----------c----cccc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN-----------Q----SLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~-----------~----~~~~ 632 (755)
..|+|||++.++ .++.++|||||||+++||+||+.|+....... .+.+......... . ....
T Consensus 163 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T cd07835 163 LWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEID--QLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKW 240 (283)
T ss_pred cCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCChHHhhhhhhchhhhhhcccc
Confidence 469999987654 57999999999999999999999986543221 1111111100000 0 0000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+............+.+++.+|++.+|.+||+|.||++
T Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~ 279 (283)
T cd07835 241 ARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ 279 (283)
T ss_pred cccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 001111111112246778999999999999999999974
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=123.42 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=62.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|||||....+.|+..+|.||.||+|||+.+|++|+.. ..+...+...+.+ |-. ++......+
T Consensus 164 PlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a------~si~~Lv~~I~~d--------~v~--~p~~~S~~f 227 (808)
T KOG0597|consen 164 PLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYA------RSITQLVKSILKD--------PVK--PPSTASSSF 227 (808)
T ss_pred ccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchH------HHHHHHHHHHhcC--------CCC--CcccccHHH
Confidence 569999999999999999999999999999999999863 2233333333321 111 122223344
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+...-++.||.+|-+-.++..
T Consensus 228 ~nfl~gLL~kdP~~RltW~~Ll~ 250 (808)
T KOG0597|consen 228 VNFLQGLLIKDPAQRLTWTDLLG 250 (808)
T ss_pred HHHHHHHhhcChhhcccHHHHhc
Confidence 45555668899999999988763
|
|
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=121.54 Aligned_cols=94 Identities=20% Similarity=0.339 Sum_probs=56.8
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
.+|||||++.. +.++.++|||||||+++||++|+.|+......+ ............. +.+..... .+
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~------~~~~i~~~~~~~~-~~~~~~~~-~~ 238 (331)
T cd05597 167 PDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE------TYGKIMNHKEHFQ-FPPDVTDV-SE 238 (331)
T ss_pred ccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHH------HHHHHHcCCCccc-CCCccCCC-CH
Confidence 57999999863 568899999999999999999999986533221 1111221111111 11111112 23
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
++..+++= +.|...++..||++.+++.
T Consensus 239 ~~~~li~~-ll~~~~~r~~r~~~~~~l~ 265 (331)
T cd05597 239 EAKDLIRR-LICSPETRLGRNGLQDFKD 265 (331)
T ss_pred HHHHHHHH-HccCcccccCCCCHHHHhc
Confidence 34444432 2366666667899988875
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-11 Score=126.30 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=62.4
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHHHHH----HhhcC-cccc-------ccC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEWAWN----LHENN-QSLG-------LVD 634 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~~~~----~~~~~-~~~~-------~~d 634 (755)
..|+|||++.+. .++.++|||||||+++||+||+.|+......+... ...+... .+... .+.+ ...
T Consensus 167 ~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (294)
T PLN00009 167 LWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPP 246 (294)
T ss_pred ecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCC
Confidence 469999988764 57999999999999999999999986543322111 1000000 00000 0000 000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..........+.+++.+|++.+|++||+|.++++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~ 283 (294)
T PLN00009 247 KDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE 283 (294)
T ss_pred CCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000001112235778999999999999999999985
|
|
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-11 Score=124.38 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=61.3
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||++. +..++.++|||||||++||+++|+.|+........ +.. +..+.. +.+ ..+..
T Consensus 167 ~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~--~~~-----~~~~~~-----~~~-~~~~~ 233 (280)
T cd06611 167 PYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRV--LLK-----ILKSEP-----PTL-DQPSK 233 (280)
T ss_pred hhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHH--HHH-----HhcCCC-----CCc-CCccc
Confidence 4699999875 34578899999999999999999999875432211 111 111111 111 01112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++..|++.+|++||++.+|++
T Consensus 234 ~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (280)
T cd06611 234 WSSSFNDFLKSCLVKDPDDRPTAAELLK 261 (280)
T ss_pred CCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence 2235667888999999999999999975
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-11 Score=132.08 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=62.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC---CCCCHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL---TEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l---~~~~~~~~ 645 (755)
+-|||||.+..+.||...|-|||||+|+||+.|..|+.....++ ++|.-+ ..||....
T Consensus 532 pey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee-------------------~FdsI~~d~~~yP~~ls 592 (694)
T KOG0694|consen 532 PEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE-------------------VFDSIVNDEVRYPRFLS 592 (694)
T ss_pred hhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH-------------------HHHHHhcCCCCCCCccc
Confidence 56999999999999999999999999999999999998654332 222222 12445556
Q ss_pred HHHHHHHHHhcccCCCCCCCH
Q 004413 646 LRVIGVALLCTQASPMMRPPM 666 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm 666 (755)
.+.+.|+.+-+..+|++|--+
T Consensus 593 ~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 593 KEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred HHHHHHHHHHhccCcccccCC
Confidence 677778888899999999877
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-11 Score=121.21 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=63.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|++||+.....++.++||||||++++|+++|+.|+......... ..... .......+ +......+
T Consensus 161 ~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~-~~~~~~~~------~~~~~~~~ 227 (253)
T cd05122 161 PYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKAL------FKIAT-NGPPGLRN------PEKWSDEF 227 (253)
T ss_pred CcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHH------HHHHh-cCCCCcCc------ccccCHHH
Confidence 5799999999889999999999999999999999998754322111 11111 11111111 11113457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.||++
T Consensus 228 ~~~i~~~l~~~p~~R~t~~~~l~ 250 (253)
T cd05122 228 KDFLKKCLQKNPEKRPTAEQLLK 250 (253)
T ss_pred HHHHHHHccCChhhCCCHHHHhc
Confidence 78889999999999999999874
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-11 Score=125.89 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=62.0
Q ss_pred cccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc-----ccccCC-CCCCC--
Q 004413 570 GYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS-----LGLVDP-TLTEF-- 640 (755)
Q Consensus 570 gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~d~-~l~~~-- 640 (755)
.|+|||++... .++.|+|||||||+++||+||+.|+..............+......... .+..+. .+...
T Consensus 188 ~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (310)
T cd07865 188 WYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQK 267 (310)
T ss_pred cccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccc
Confidence 49999988664 4789999999999999999999998754433222222221110000000 000000 00000
Q ss_pred --------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 641 --------NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 641 --------~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+..+...+.+++..|++.+|++||++.|+++
T Consensus 268 ~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~ 306 (310)
T cd07865 268 RKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN 306 (310)
T ss_pred hhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence 0001234568999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-11 Score=126.33 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=63.2
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHh-----------hcCccccccC--C
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLH-----------ENNQSLGLVD--P 635 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~d--~ 635 (755)
.|+|||++.. ..++.++|||||||+++||++|+.|+......... ..+.... ....+.+..+ +
T Consensus 176 ~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 252 (334)
T cd07855 176 WYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQL---KLILSVLGSPSEEVLNRIGSDRVRKYIQNLP 252 (334)
T ss_pred cccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHH---HHHHHHhCCChhHhhhhhchhhHHHHHhhcc
Confidence 5999998765 56899999999999999999999998754322111 1111000 0000000000 0
Q ss_pred CCCCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 TLTEFN-----DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ~l~~~~-----~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+ ......+.++...|++.+|++||++.+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~ 293 (334)
T cd07855 253 RKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ 293 (334)
T ss_pred cCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 000111 123456888999999999999999999886
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-11 Score=131.68 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=59.3
Q ss_pred ccccchhhhhc----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAMR----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
+.|||||++.. ..++.++|||||||+++||+||+.|+......+ . ...... +.. .+..|.-.. .
T Consensus 207 ~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---~---~~~i~~-~~~-~~~~~~~~~----~ 274 (370)
T cd05596 207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---T---YSKIMD-HKN-SLTFPDDIE----I 274 (370)
T ss_pred cCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH---H---HHHHHc-CCC-cCCCCCcCC----C
Confidence 35999999865 348899999999999999999999987543221 1 111111 110 011111011 1
Q ss_pred HHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMM--RPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~--RPsm~~v~~ 671 (755)
...+.++...|++.+|.+ ||++.|+++
T Consensus 275 s~~~~~li~~~L~~~p~r~~R~s~~ell~ 303 (370)
T cd05596 275 SKQAKDLICAFLTDREVRLGRNGVDEIKS 303 (370)
T ss_pred CHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence 235566788899888887 999999864
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-11 Score=120.80 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=65.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+......+.++||||||++++|+++|+.|+....... .-++.....+.. ...+......+
T Consensus 167 ~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~l 233 (260)
T cd06606 167 PYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPM-----AALYKIGSSGEP--------PEIPEHLSEEA 233 (260)
T ss_pred ccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH-----HHHHhccccCCC--------cCCCcccCHHH
Confidence 57999999999899999999999999999999999987544111 111111110111 11222334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||++.|+++
T Consensus 234 ~~~i~~~l~~~p~~Rp~~~~ll~ 256 (260)
T cd06606 234 KDFLRKCLRRDPKKRPTADELLQ 256 (260)
T ss_pred HHHHHHhCcCChhhCCCHHHHhh
Confidence 78889999999999999999975
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-11 Score=139.12 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=68.0
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
+..+|||||++.+..++.++|||||||+++||+||+.|+....... +. .. . .+.++.-.....+...
T Consensus 193 GT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k---i~---~~----~---~i~~P~~~~p~~~iP~ 259 (932)
T PRK13184 193 GTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK---IS---YR----D---VILSPIEVAPYREIPP 259 (932)
T ss_pred CCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh---hh---hh----h---hccChhhccccccCCH
Confidence 4467999999999999999999999999999999999986532211 10 00 0 0111110000012234
Q ss_pred HHHHHHHHhcccCCCCCC-CHHHHHHHHhcccc
Q 004413 647 RVIGVALLCTQASPMMRP-PMSRVVAMLAGDIE 678 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RP-sm~~v~~~L~~~~~ 678 (755)
.+.+++.+|++.+|++|| ++.++.+.|+....
T Consensus 260 ~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq 292 (932)
T PRK13184 260 FLSQIAMKALAVDPAERYSSVQELKQDLEPHLQ 292 (932)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 567889999999999995 77888888876544
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-11 Score=122.73 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=55.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|||||++.+..++..+|.||.||+++||+||.+|+.... ..+|.....+ +++. ....+-..++
T Consensus 189 ~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~------~~~~~~~I~~-~k~~-----~~p~~ls~~a--- 253 (357)
T KOG0598|consen 189 PEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED------VKKMYDKILK-GKLP-----LPPGYLSEEA--- 253 (357)
T ss_pred ccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc------HHHHHHHHhc-CcCC-----CCCccCCHHH---
Confidence 46999999999999999999999999999999999997543 2233333332 2210 1112122333
Q ss_pred HHHHHHhcccCCCCCC
Q 004413 649 IGVALLCTQASPMMRP 664 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP 664 (755)
.++...-++.+|++|-
T Consensus 254 rdll~~LL~rdp~~RL 269 (357)
T KOG0598|consen 254 RDLLKKLLKRDPRQRL 269 (357)
T ss_pred HHHHHHHhccCHHHhc
Confidence 3344455788999995
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-11 Score=122.79 Aligned_cols=92 Identities=25% Similarity=0.435 Sum_probs=68.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++.++.++.++|||||||+++||+| |+.|+......+ ...++ ..+... ..+......
T Consensus 177 ~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~---~~~~~----~~~~~~--------~~~~~~~~~ 241 (269)
T cd05044 177 VRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQE---VLQHV----TAGGRL--------QKPENCPDK 241 (269)
T ss_pred ccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHH---HHHHH----hcCCcc--------CCcccchHH
Confidence 57999999999999999999999999999998 999986543221 22211 111100 111223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+|++.+|.+||+|.+|.+.|+.
T Consensus 242 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 269 (269)
T cd05044 242 IYQLMTNCWAQDPSERPTFDRIQEILQN 269 (269)
T ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence 7789999999999999999999999863
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-10 Score=126.80 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=37.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
..|||||++.+..++.++|||||||+++||++|+.|+....
T Consensus 200 ~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~ 240 (363)
T cd05628 200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET 240 (363)
T ss_pred ccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence 46999999999999999999999999999999999997544
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-11 Score=126.80 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred ccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhcCccccccC----CCC
Q 004413 571 YLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHENNQSLGLVD----PTL 637 (755)
Q Consensus 571 y~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~d----~~l 637 (755)
|+|||+... ..++.++|||||||+++||++|+.|+............... +..+. .+....+ ...
T Consensus 192 y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 269 (311)
T cd07866 192 YRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWR--SLPGCEGVHSFTNY 269 (311)
T ss_pred cCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhh--hcccccccccCCCC
Confidence 999998765 45899999999999999999999998754432211111000 00000 0011111 111
Q ss_pred C----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 T----EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~----~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. +........+.+++.+|++.+|++|||+.|++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~ 307 (311)
T cd07866 270 PRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE 307 (311)
T ss_pred CccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence 0 000111245778999999999999999998864
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.4e-10 Score=119.20 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=35.9
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
.+|||||++. .+.++.++|||||||+++||++|+.|+....
T Consensus 167 ~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~ 212 (332)
T cd05623 167 PDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES 212 (332)
T ss_pred ccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC
Confidence 5799999986 4578999999999999999999999987543
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-10 Score=124.84 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=61.4
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++. .+.++.++|||||||+++||++|+.|+....... . +...... .......+ .+ .
T Consensus 181 ~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~---~---~~~~~~~-~~~~~~~~---~~----~ 246 (313)
T cd06633 181 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---A---LYHIAQN-DSPTLQSN---EW----T 246 (313)
T ss_pred ccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHH---H---HHHHHhc-CCCCCCcc---cc----C
Confidence 3699999974 4678999999999999999999999986543221 1 1111111 11111111 11 2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++..+|++.+|.+||++.+++.
T Consensus 247 ~~l~~li~~~l~~~P~~Rp~~~~~l~ 272 (313)
T cd06633 247 DSFRGFVDYCLQKIPQERPASAELLR 272 (313)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 34667888999999999999999974
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=132.02 Aligned_cols=109 Identities=28% Similarity=0.358 Sum_probs=99.8
Q ss_pred cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCC-CCCCEEEeeCcccc
Q 004413 127 DIYNVSSSLDFVMSL-KNLTDLSLRNALIT 155 (755)
Q Consensus 127 ~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~ 155 (755)
+|.+....+..+..+ .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999887777776653 46788999988654
|
|
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-11 Score=122.67 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=64.5
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC------cccc--------c-
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN------QSLG--------L- 632 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~------~~~~--------~- 632 (755)
..|+|||..... ..+.|+||||||++++|++||+.|+......+... -....+... ...+ .
T Consensus 162 ~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T cd05118 162 RWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLF---KIFRTLGTPDPEVWPKFTSLARNYKFSFP 238 (283)
T ss_pred ccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHH---HHHHHcCCCchHhcccchhhhhhhhhhhc
Confidence 359999998876 78999999999999999999999886543322111 011110000 0000 0
Q ss_pred --cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 --VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 --~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+........+....+.+++..|++.+|.+||+|.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~ 279 (283)
T cd05118 239 KKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA 279 (283)
T ss_pred cccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence 000001111223457889999999999999999999975
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-11 Score=124.58 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc---Cc---ccc----------
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN---NQ---SLG---------- 631 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~---~~---~~~---------- 631 (755)
..|+|||.+.+ ..++.|+||||||++++||+||+.|++....... ...+...... .. ..+
T Consensus 165 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (287)
T cd07840 165 LWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQ---LEKIFELCGSPTDENWPGVSKLPWFENLKPK 241 (287)
T ss_pred cccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCchhhccccccchhhhhcccc
Confidence 35999997654 4689999999999999999999999875443221 1111111100 00 000
Q ss_pred -ccCCCCCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 632 -LVDPTLTE-FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 632 -~~d~~l~~-~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+.+ ....+...+.+++..|++.+|++||++.+|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 283 (287)
T cd07840 242 KPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ 283 (287)
T ss_pred ccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 00000000 00112457889999999999999999999975
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-10 Score=120.41 Aligned_cols=91 Identities=26% Similarity=0.348 Sum_probs=65.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||++.++..+.++|||||||+++|+++ |..|+...... .+..+ ...+...... +......+
T Consensus 183 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~---~~~~~----~~~~~~~~~~-------~~~~~~~l 248 (275)
T cd05046 183 RWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE---EVLNR----LQAGKLELPV-------PEGCPSRL 248 (275)
T ss_pred eecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH---HHHHH----HHcCCcCCCC-------CCCCCHHH
Confidence 4999999998899999999999999999999 77777543221 11111 1222211110 11223468
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++.+|++.+|++||++.|++.+|.
T Consensus 249 ~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 249 YKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred HHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 88999999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-10 Score=123.51 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=62.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh---------cCccccccC----
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE---------NNQSLGLVD---- 634 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~d---- 634 (755)
..|+|||++.+ ..++.++|||||||+++|+++|+.++......+. +.. ...... .........
T Consensus 166 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T cd07841 166 RWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQ--LGK-IFEALGTPTEENWPGVTSLPDYVEFKPF 242 (298)
T ss_pred eeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHH--HHH-HHHHcCCCchhhhhhccccccccccccc
Confidence 35999998865 4679999999999999999999777654332211 111 100000 000000000
Q ss_pred --CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 --PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 --~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..........+.+++..|++.+|++||++.||++
T Consensus 243 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~ 281 (298)
T cd07841 243 PPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE 281 (298)
T ss_pred CCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence 0001111223456788999999999999999999986
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.3e-11 Score=124.24 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC---ccccc--------cCC--
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN---QSLGL--------VDP-- 635 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~---~~~~~--------~d~-- 635 (755)
.|+|||.+.. ..++.++|||||||+++||++|+.|++.....+. +. -+....... ...++ .|+
T Consensus 182 ~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (302)
T cd07864 182 WYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQ--LE-LISRLCGSPCPAVWPDVIKLPYFNTMKPKK 258 (302)
T ss_pred CccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHH--HH-HHHHHhCCCChhhccccccccccccccccc
Confidence 4999998764 4578999999999999999999999875432221 11 111111100 00000 000
Q ss_pred ----CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 ----TLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ----~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+..........+.+++..|++.+|.+||++.+|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 298 (302)
T cd07864 259 QYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN 298 (302)
T ss_pred ccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 000000012346788999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=127.42 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=72.5
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC-CCCHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT-EFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~~ 644 (755)
+-|.|||++. +..+++|+|||++||+||-|+-...||+... -..|++.... .-.+..
T Consensus 219 p~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg-------------------~laIlng~Y~~P~~p~y 279 (738)
T KOG1989|consen 219 PQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG-------------------KLAILNGNYSFPPFPNY 279 (738)
T ss_pred ccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc-------------------ceeEEeccccCCCCccH
Confidence 5699999874 6789999999999999999999999997431 1234444431 111356
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
..++..|+..|++++|++||++-+|+..+-.+...+
T Consensus 280 s~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~ 315 (738)
T KOG1989|consen 280 SDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP 315 (738)
T ss_pred HHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence 678888999999999999999999998887766554
|
|
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-10 Score=124.20 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=66.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++....++.++|||||||+++|++||+.|+......+ +...... +. ...+... ......+
T Consensus 180 ~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~------~~~~~~~-~~---~~~~~~~---~~~~~~~ 246 (305)
T cd05609 180 PEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE------LFGQVIS-DD---IEWPEGD---EALPADA 246 (305)
T ss_pred ccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHh-cc---cCCCCcc---ccCCHHH
Confidence 46999999998999999999999999999999999986543221 1111111 11 1111111 1123456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..|++.+|++||++.++.+.|+.
T Consensus 247 ~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 247 QDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred HHHHHHHhccChhhccCccCHHHHHhC
Confidence 789999999999999998878777765
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-10 Score=122.48 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred ccccchhhh-hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh--------cC---------ccc
Q 004413 569 HGYLAPEYA-MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE--------NN---------QSL 630 (755)
Q Consensus 569 ~gy~aPE~~-~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~--------~~---------~~~ 630 (755)
.-|.|||++ +.+.|+.+.|+|+||+|+.||.+-|.-+-+....+... -+.+.+. +| +..
T Consensus 173 RWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~---KIc~VLGtP~~~~~~eg~~La~~mnf~~P 249 (538)
T KOG0661|consen 173 RWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIY---KICEVLGTPDKDSWPEGYNLASAMNFRFP 249 (538)
T ss_pred ccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHH---HHHHHhCCCccccchhHHHHHHHhccCCC
Confidence 359999976 57899999999999999999999887765543332221 1111111 10 011
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 ~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.--.+...-..+..+.++++..|++.||++|||+.|.++
T Consensus 250 ~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~ 290 (538)
T KOG0661|consen 250 QVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQ 290 (538)
T ss_pred cCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhc
Confidence 11111122222235677889999999999999999999976
|
|
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-10 Score=124.09 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=39.2
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
+..+|||||++....++.++|||||||+++||+||+.|+.....
T Consensus 206 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~ 249 (376)
T cd05598 206 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTP 249 (376)
T ss_pred CCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCH
Confidence 34579999999999999999999999999999999999976543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-11 Score=123.51 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=61.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC---cc---------ccc---
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN---QS---------LGL--- 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~---~~---------~~~--- 632 (755)
..|+|||+..+ ..++.++|||||||+++||++|+.|+........ ...-.+..+... .. ...
T Consensus 167 ~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T cd07844 167 LWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVED--QLHKIFRVLGTPTEETWPGVSSNPEFKPYSFP 244 (291)
T ss_pred cccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHH--HHHHHHHhcCCCChhhhhhhhhcccccccccc
Confidence 35999998875 5589999999999999999999999865432111 111111111100 00 000
Q ss_pred -c-CCCCCC-C-CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 -V-DPTLTE-F-NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 -~-d~~l~~-~-~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. ...+.. . .......+.+++..|++.+|++||++.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~ 287 (291)
T cd07844 245 FYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK 287 (291)
T ss_pred ccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence 0 000000 0 0011245678999999999999999999864
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-11 Score=121.35 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=65.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..+..++.|+|||||||+++|++||+.|+........ ...+..+... ..+.. .......+
T Consensus 157 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-------~~~~~~~~~~--~~~~~---~~~~~~~~ 224 (260)
T cd05611 157 PDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAV-------FDNILSRRIN--WPEEV---KEFCSPEA 224 (260)
T ss_pred cCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHH-------HHHHHhcccC--CCCcc---cccCCHHH
Confidence 569999999888899999999999999999999999875433211 1111111110 01111 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+++..|++.+|++||++.++.+.|.
T Consensus 225 ~~~i~~~l~~~p~~R~~~~~~~~~l~ 250 (260)
T cd05611 225 VDLINRLLCMDPAKRLGANGYQEIKS 250 (260)
T ss_pred HHHHHHHccCCHHHccCCCcHHHHHc
Confidence 88999999999999998877766654
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-10 Score=122.99 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=61.7
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc------ccccC----CC-
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS------LGLVD----PT- 636 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~d----~~- 636 (755)
..|+|||++.. ..++.++|||||||+++||+||+.|+........ +.+.. ..+..... .+..+ +.
T Consensus 175 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (295)
T cd07837 175 LWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQ--LLHIF-KLLGTPTEQVWPGVSKLRDWHEFPQW 251 (295)
T ss_pred cCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHH--HHHHH-HHhCCCChhhCcchhhccchhhcCcc
Confidence 35999998865 4579999999999999999999999865432211 11100 11100000 00000 00
Q ss_pred ----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 ----LTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 ----l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+....+.....+.+++..|++.+|.+||++.|++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 252 KPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT 290 (295)
T ss_pred cchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 00000112345778999999999999999999874
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=123.80 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HH---------------HHHHHHHhhcCc----
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YL---------------LEWAWNLHENNQ---- 628 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l---------------~~~~~~~~~~~~---- 628 (755)
..|+|||...+..++.++|||||||+++||++|+.|+......... .+ ...+........
T Consensus 181 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (353)
T cd07850 181 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAG 260 (353)
T ss_pred ccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCC
Confidence 3599999999999999999999999999999999998654321110 00 000001111000
Q ss_pred --cccccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 629 --SLGLVDPTL-----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 629 --~~~~~d~~l-----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+++...+ ..........+.++..+|++.+|++||++.|++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~ 310 (353)
T cd07850 261 YSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ 310 (353)
T ss_pred cchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 001111111 0011123456778999999999999999999984
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-10 Score=125.59 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=63.1
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhH-HHHHH--------HHHHHhhcCccccccCC-CC-
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEK-IYLLE--------WAWNLHENNQSLGLVDP-TL- 637 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~-~~l~~--------~~~~~~~~~~~~~~~d~-~l- 637 (755)
.|+|||++.+ ..++.++|||||||+++|++||+.|+........ ..+.+ |........ ..+++.. ..
T Consensus 170 ~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 248 (328)
T cd07856 170 YYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSEN-TLRFVQSLPKR 248 (328)
T ss_pred cccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchh-hHHHHhhcccc
Confidence 5999998766 5789999999999999999999999865433211 11111 111111110 0001000 00
Q ss_pred CCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+. .....+.+++..|++.+|++||++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~ 287 (328)
T cd07856 249 EPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA 287 (328)
T ss_pred CCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 01111 12356788999999999999999999875
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-10 Score=127.23 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=35.3
Q ss_pred ccccchhhhhcC----CCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRG----HLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~----~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
.+|||||.+... .++.++||||+||+++||+||+.|+....
T Consensus 207 ~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~ 251 (370)
T cd05621 207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADS 251 (370)
T ss_pred cccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCC
Confidence 469999998753 48899999999999999999999987543
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-10 Score=121.57 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=62.8
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHH-------HHHHh------hcCcccccc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEW-------AWNLH------ENNQSLGLV 633 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~-------~~~~~------~~~~~~~~~ 633 (755)
..|+|||+.... .++.++|||||||+++||++|+.|+.......... +... .|..+ ......+..
T Consensus 170 ~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (293)
T cd07843 170 LWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYP 249 (293)
T ss_pred ccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhccccccccc
Confidence 359999988754 46899999999999999999999987543322111 1110 01000 000000111
Q ss_pred CCCC-CCCCHH-HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 DPTL-TEFNDK-EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 d~~l-~~~~~~-~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+ ..++.. ....+.+++..|++.+|++||++.|++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~ 289 (293)
T cd07843 250 YNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK 289 (293)
T ss_pred chhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence 1111 111111 2345677889999999999999999974
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-10 Score=122.47 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=62.4
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHH-------HHHhhcCccccccCCCCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWA-------WNLHENNQSLGLVDPTLTE 639 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~-------~~~~~~~~~~~~~d~~l~~ 639 (755)
..|++||++.+. .++.++|||||||+++|++||+.|+......+.. .+.+.. ++.+.. . .........
T Consensus 164 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~ 240 (284)
T cd07836 164 LWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQ--L-PEYKPTFPR 240 (284)
T ss_pred ccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhc--C-chhcccccC
Confidence 469999988664 5789999999999999999999998754332211 111110 000000 0 000011100
Q ss_pred --------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 --------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 --------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
........+.++...|++.+|++||++.||++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~ 280 (284)
T cd07836 241 YPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ 280 (284)
T ss_pred CChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 11122345678999999999999999999874
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-10 Score=121.66 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=37.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
++|||||++....++.++|||||||+++||+||+.|+....
T Consensus 203 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~ 243 (364)
T cd05599 203 PDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN 243 (364)
T ss_pred ccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC
Confidence 46999999999999999999999999999999999997654
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-10 Score=125.09 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=62.6
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHHH-------HHHhhcCccccccC----CC
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEWA-------WNLHENNQSLGLVD----PT 636 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~~-------~~~~~~~~~~~~~d----~~ 636 (755)
.|+|||++.. ..++.++|||||||+++||+||+.|+......+... +..+. +..+......++++ ..
T Consensus 177 ~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T cd07852 177 WYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRP 256 (337)
T ss_pred cccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhccccc
Confidence 5999998754 568899999999999999999999986543222111 00000 00000000001111 00
Q ss_pred ---CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 ---LTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 ---l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.....+....+.+++..|++.+|++||++.++++
T Consensus 257 ~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~ 294 (337)
T cd07852 257 RKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALE 294 (337)
T ss_pred ccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhh
Confidence 01111112456788999999999999999999986
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-10 Score=119.27 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=68.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||+..+..++.++|||||||+++||+| |+.|++.....+ +..... ..+... ..+......
T Consensus 164 ~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~~~---~~~~~~--------~~~~~~~~~ 229 (257)
T cd05040 164 FAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ---ILKKID---KEGERL--------ERPEACPQD 229 (257)
T ss_pred ceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHH---hcCCcC--------CCCccCCHH
Confidence 57999999999999999999999999999999 999986543322 221111 111100 011223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++.+|++.+|++||++.+|++.|.
T Consensus 230 ~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 230 IYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred HHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 888999999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.8e-11 Score=129.18 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=69.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++....++.++|||||||+++|+++ |+.|+......+. ....+..+... . .+......
T Consensus 305 ~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~------~~~~~~~~~~~-----~---~p~~~~~~ 370 (401)
T cd05107 305 LKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ------FYNAIKRGYRM-----A---KPAHASDE 370 (401)
T ss_pred CceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH------HHHHHHcCCCC-----C---CCCCCCHH
Confidence 56999999999999999999999999999998 8888765432211 11112222110 0 11122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|.+||+|.||++.|+..
T Consensus 371 l~~li~~cl~~~P~~RPs~~ell~~L~~~ 399 (401)
T cd05107 371 IYEIMQKCWEEKFEIRPDFSQLVHLVGDL 399 (401)
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 78889999999999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-10 Score=121.49 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=68.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh--CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS--GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt--g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+...+.++.++|||||||++|||+| |..|+......+ ....+...+..... ....+. +..+..
T Consensus 196 ~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~----~~~~~~ 267 (296)
T cd05095 196 IRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ---VIENTGEFFRDQGR-QVYLPK----PALCPD 267 (296)
T ss_pred cccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH---HHHHHHHHHhhccc-cccCCC----CCCCCH
Confidence 46999999999999999999999999999999 667765433222 12222222211111 111111 122345
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.+.+++.+||+.+|.+||+|.||.+.|+
T Consensus 268 ~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 268 SLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 7888999999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-10 Score=126.00 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=35.3
Q ss_pred ccccchhhhhcC----CCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRG----HLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~----~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
.+|||||++... .++.++|||||||+++||++|+.|+....
T Consensus 207 ~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~ 251 (371)
T cd05622 207 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS 251 (371)
T ss_pred ccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCC
Confidence 359999998753 48899999999999999999999997543
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-10 Score=118.46 Aligned_cols=91 Identities=18% Similarity=0.335 Sum_probs=62.2
Q ss_pred cccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 568 FHGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+-|||||++..+... .++||||+||+++||+||++|+... ....+|+.....++. -|.+.+ ....
T Consensus 184 tp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~-----~~~~~~~~~ig~~~~-----~P~ip~---~ls~ 250 (313)
T KOG0198|consen 184 TPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF-----FEEAEALLLIGREDS-----LPEIPD---SLSD 250 (313)
T ss_pred CccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh-----cchHHHHHHHhccCC-----CCCCCc---ccCH
Confidence 3679999999965444 4999999999999999999998753 112233333332221 122322 2223
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+....|.+.+|++|||+.+.++
T Consensus 251 ~a~~Fl~~C~~~~p~~Rpta~eLL~ 275 (313)
T KOG0198|consen 251 EAKDFLRKCFKRDPEKRPTAEELLE 275 (313)
T ss_pred HHHHHHHHHhhcCcccCcCHHHHhh
Confidence 4445667999999999999999875
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=119.59 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=64.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++||||||++++|+++|+.|++..... +....... +.. ...+......+
T Consensus 167 ~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~------~~~~~~~~-~~~--------~~~~~~~~~~~ 231 (258)
T cd08215 167 PYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLL------ELALKILK-GQY--------PPIPSQYSSEL 231 (258)
T ss_pred ecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHH------HHHHHHhc-CCC--------CCCCCCCCHHH
Confidence 4599999999999999999999999999999999998754321 11111111 111 11122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|++||++.|+++
T Consensus 232 ~~~i~~~l~~~p~~Rp~~~~ll~ 254 (258)
T cd08215 232 RNLVSSLLQKDPEERPSIAQILQ 254 (258)
T ss_pred HHHHHHHcCCChhhCcCHHHHhc
Confidence 78899999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-10 Score=121.36 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=61.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||...+ ..++.|+|||||||+++||+||+.|+.......... ...... ..+..+ +.....+
T Consensus 159 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~----~~~~~~------~~~~~~---~~~~~~~ 225 (279)
T cd05633 159 HGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDRMTL------TVNVEL---PDSFSPE 225 (279)
T ss_pred cCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHH----HHHHhh------cCCcCC---ccccCHH
Confidence 57999998874 458999999999999999999999986543222111 111110 011112 2222345
Q ss_pred HHHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 648 VIGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
+.++...|++.+|.+|| ++.|+++
T Consensus 226 ~~~li~~~l~~~p~~R~~~~~~~~~~~~~ 254 (279)
T cd05633 226 LKSLLEGLLQRDVSKRLGCLGRGAQEVKE 254 (279)
T ss_pred HHHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence 67788899999999999 5887754
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-10 Score=118.69 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=63.7
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------cccc--cCCCCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------SLGL--VDPTLTE 639 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------~~~~--~d~~l~~ 639 (755)
..|+|||++... .++.++|||||||+++|+++|+.|+......+ ...++........ ..++ .+.....
T Consensus 162 ~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (282)
T cd07829 162 LWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID---QLFKIFQILGTPTEESWPGVTKLPDYKPTFPK 238 (282)
T ss_pred cCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHH---HHHHHHHHhCCCcHHHHHhhcccccccccccc
Confidence 359999998776 89999999999999999999998886543221 1111111110000 0000 0111110
Q ss_pred C--------CHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 F--------NDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 ~--------~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+ .......+.+++..|++.+|++||++.+|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~ 278 (282)
T cd07829 239 FPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK 278 (282)
T ss_pred cCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence 0 0011346888999999999999999999974
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-10 Score=120.46 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=62.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||+..+..++.|+|||||||+++|++||+.|+......+. ....... ..+.+... ......+
T Consensus 180 ~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~---~~~~~~~---------~~~~~~~~-~~~~~~l 246 (292)
T cd06657 180 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---MKMIRDN---------LPPKLKNL-HKVSPSL 246 (292)
T ss_pred ccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHhh---------CCcccCCc-ccCCHHH
Confidence 359999999888999999999999999999999999864332211 1111111 11111110 1122346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++..+|++.+|.+||++.+|++
T Consensus 247 ~~li~~~l~~~P~~R~~~~~ll~ 269 (292)
T cd06657 247 KGFLDRLLVRDPAQRATAAELLK 269 (292)
T ss_pred HHHHHHHHhCCcccCcCHHHHhc
Confidence 67888999999999999999875
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-10 Score=123.96 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=64.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.+..++.++|||||||++|||++|+.|+........ +. .... ... .... .......+
T Consensus 196 ~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~--~~----~~~~-~~~------~~~~-~~~~~~~~ 261 (316)
T cd05574 196 EEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET--FS----NILK-KEV------TFPG-SPPVSSSA 261 (316)
T ss_pred cCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH--HH----HHhc-CCc------cCCC-ccccCHHH
Confidence 359999999999999999999999999999999999875433211 11 1111 100 0111 11134568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.++..+|++.+|++||++...++++..
T Consensus 262 ~~li~~~l~~~p~~R~s~~~~~~~ll~ 288 (316)
T cd05574 262 RDLIRKLLVKDPSKRLGSKRGAAEIKQ 288 (316)
T ss_pred HHHHHHHccCCHhHCCCchhhHHHHHc
Confidence 889999999999999995555554443
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-10 Score=122.67 Aligned_cols=102 Identities=13% Similarity=0.201 Sum_probs=61.6
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHH-------HHHHhhcCcccccc--CC-CC
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEW-------AWNLHENNQSLGLV--DP-TL 637 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~-------~~~~~~~~~~~~~~--d~-~l 637 (755)
.|+|||.+.+ ..++.++|||||||+++||++|+.|+......+... +..+ .+..+........+ .. ..
T Consensus 173 ~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (309)
T cd07845 173 WYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPY 252 (309)
T ss_pred cccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCC
Confidence 4999998865 457999999999999999999999987544322111 1110 00000000000000 00 00
Q ss_pred CCCC---HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFN---DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~---~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.... ......+.+++..|++.+|++|||+.|+++
T Consensus 253 ~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~ 289 (309)
T cd07845 253 NNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE 289 (309)
T ss_pred CchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 0000 011344567899999999999999999985
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-10 Score=118.13 Aligned_cols=88 Identities=19% Similarity=0.181 Sum_probs=62.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++||||||++++|+++|+.|++...... .++........ . + ..+......+
T Consensus 163 ~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~----~~~~~~~~~~~--~----~---~~~~~~~~~~ 229 (258)
T cd05578 163 PGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI----RDQIRAKQETA--D----V---LYPATWSTEA 229 (258)
T ss_pred hhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccH----HHHHHHHhccc--c----c---cCcccCcHHH
Confidence 46999999999899999999999999999999999987654321 12222221110 0 0 1122223567
Q ss_pred HHHHHHhcccCCCCCCCH--HHH
Q 004413 649 IGVALLCTQASPMMRPPM--SRV 669 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm--~~v 669 (755)
.++...|++.+|.+||++ .|+
T Consensus 230 ~~~i~~~l~~~p~~R~~~~~~~l 252 (258)
T cd05578 230 IDAINKLLERDPQKRLGDNLKDL 252 (258)
T ss_pred HHHHHHHccCChhHcCCccHHHH
Confidence 788999999999999999 554
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-10 Score=126.55 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHH-------HHHHhhcCc-------cccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEW-------AWNLHENNQ-------SLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~-------~~~~~~~~~-------~~~~ 632 (755)
..|+|||+... ..++.|+|||||||+++|++||+.|+.......... +..+ ....+.... +...
T Consensus 181 ~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (345)
T cd07877 181 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 260 (345)
T ss_pred CCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhccc
Confidence 35999998866 578899999999999999999999986433221110 1000 000000000 0000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
......+........+.+++..|++.+|.+||++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~ 299 (345)
T cd07877 261 PKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 299 (345)
T ss_pred CCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence 000000000011235678999999999999999998874
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=124.02 Aligned_cols=95 Identities=24% Similarity=0.331 Sum_probs=68.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.|+|||||||+++|+++ |..|+........ ......++.... .... ....
T Consensus 245 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~------~~~~~~~~~~~~-----~~~~---~~~~ 310 (343)
T cd05103 245 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE------FCRRLKEGTRMR-----APDY---TTPE 310 (343)
T ss_pred cceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHH------HHHHHhccCCCC-----CCCC---CCHH
Confidence 45999999999999999999999999999997 8888765322111 111222221111 1111 1235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..||+.+|++||+|.||++.|+...
T Consensus 311 ~~~~~~~cl~~~p~~Rps~~eil~~l~~~~ 340 (343)
T cd05103 311 MYQTMLDCWHGEPSQRPTFSELVEHLGNLL 340 (343)
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 788999999999999999999999998754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-10 Score=115.32 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=63.8
Q ss_pred ccccchhhhhcCCC---CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGHL---TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~---t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
++|.|||++.+.-+ ..|.|+||.||||+-++||-.|+...... ..+ .+.+..|+.. +-| ....+-.
T Consensus 342 psYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~--~sl----~eQI~~G~y~--f~p---~~w~~Is 410 (475)
T KOG0615|consen 342 PSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTD--PSL----KEQILKGRYA--FGP---LQWDRIS 410 (475)
T ss_pred ccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCC--ccH----HHHHhcCccc--ccC---hhhhhhh
Confidence 78999999976433 35889999999999999999998754321 111 1222333322 111 1223345
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
++...++-+.+..||++||+..|+++
T Consensus 411 eea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 411 EEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred HHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 56778888999999999999999975
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-10 Score=129.43 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=59.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcC-CCCCchhhHHHHHHHHHHHhh-cCc-------cccccCC-CCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN-SDNSLDMEKIYLLEWAWNLHE-NNQ-------SLGLVDP-TLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p-~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~d~-~l~ 638 (755)
..|+|||++.+..++.++|||||||++|||++|+.+ +..........+.+.....-. ... +.+.++. .+.
T Consensus 332 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~ 411 (501)
T PHA03210 332 VATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEID 411 (501)
T ss_pred cCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcc
Confidence 469999999999999999999999999999998754 432221111222221110000 000 0000000 000
Q ss_pred C---CCHH------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 E---FNDK------EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~---~~~~------~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. .... ....+.++..+|++.||.+|||+.|++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~ 453 (501)
T PHA03210 412 HAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA 453 (501)
T ss_pred cCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence 0 0000 0123456677999999999999999975
|
|
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-10 Score=119.53 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=62.7
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
+-|||||++. .|+|+-|+||||+||...||.-+|+|+..+..+.. .+....+ -.|.+. ..+-.
T Consensus 186 PywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSA------LYHIAQN------esPtLq--s~eWS 251 (948)
T KOG0577|consen 186 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQN------ESPTLQ--SNEWS 251 (948)
T ss_pred ccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHH------HHHHHhc------CCCCCC--CchhH
Confidence 5699999874 58999999999999999999999999876543321 1111111 123332 12234
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
..+....-.|++.-|.+|||..+.+
T Consensus 252 ~~F~~Fvd~CLqKipqeRptse~ll 276 (948)
T KOG0577|consen 252 DYFRNFVDSCLQKIPQERPTSEELL 276 (948)
T ss_pred HHHHHHHHHHHhhCcccCCcHHHHh
Confidence 4566677799999999999987764
|
|
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-10 Score=117.33 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=62.8
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------------cccccCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------------SLGLVDP 635 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~d~ 635 (755)
..|+|||++... .++.++||||+|++++||+||+.++......+ ...++...+.... ...+..+
T Consensus 164 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (286)
T cd07832 164 RWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIE---QLAIVFRTLGTPNEETWPGLTSLPDYNKITFP 240 (286)
T ss_pred ccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHH---HHHHHHHHcCCCChHHHhhccCcchhhcccCC
Confidence 469999988654 46899999999999999999977765433221 2222222111100 0000000
Q ss_pred CC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 TL-----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ~l-----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.- .+...+....+.++..+|++.+|++||++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~ 281 (286)
T cd07832 241 ESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR 281 (286)
T ss_pred CCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00 0011122367788999999999999999999975
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-10 Score=122.48 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=69.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.+..++.++|||||||+++||+| |+.|+......+ + . .....+... +.+......
T Consensus 206 ~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~---~---~-~~~~~~~~~--------~~~~~~~~~ 270 (307)
T cd05098 206 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE---L---F-KLLKEGHRM--------DKPSNCTNE 270 (307)
T ss_pred cceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHH---H---H-HHHHcCCCC--------CCCCcCCHH
Confidence 36999999999999999999999999999999 888876433211 1 1 111222111 112223456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..|++.+|.+||+|.+|++.|+....
T Consensus 271 ~~~li~~~l~~~p~~Rps~~evl~~l~~~~~ 301 (307)
T cd05098 271 LYMMMRDCWHAVPSQRPTFKQLVEDLDRILA 301 (307)
T ss_pred HHHHHHHHcccChhhCcCHHHHHHHHHHHHH
Confidence 7788999999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-10 Score=118.14 Aligned_cols=88 Identities=18% Similarity=0.370 Sum_probs=62.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++||||+|++++|+++|+.|+....... ..|. .. .... +.+ +......+
T Consensus 163 ~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~----~~~~--~~-~~~~-----~~~---~~~~~~~~ 227 (254)
T cd06627 163 PYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA----ALFR--IV-QDDH-----PPL---PEGISPEL 227 (254)
T ss_pred hhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH----HHHH--Hh-ccCC-----CCC---CCCCCHHH
Confidence 46999999988889999999999999999999999986533211 1111 11 1110 111 11223466
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++.+|++.+|++||++.+++.
T Consensus 228 ~~~i~~~l~~~p~~R~~~~~~l~ 250 (254)
T cd06627 228 KDFLMQCFQKDPNLRPTAKQLLK 250 (254)
T ss_pred HHHHHHHHhCChhhCcCHHHHhc
Confidence 78889999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-10 Score=109.53 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=68.7
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc-cccCCCC--CCCCH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL-GLVDPTL--TEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~d~~l--~~~~~ 642 (755)
.-|.|||.+. +...++|+||||+||+|++|+-|..||+..... .|.+. .+..+.+ ... .
T Consensus 202 ~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~--------------GgSlaLAv~n~q~s~P~~-~ 266 (302)
T KOG2345|consen 202 IPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQ--------------GGSLALAVQNAQISIPNS-S 266 (302)
T ss_pred CcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhc--------------CCeEEEeeeccccccCCC-C
Confidence 5699999875 567899999999999999999999998753221 11111 2333333 111 1
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.-.+.+.++..+|++.||.+||+..+++..++..
T Consensus 267 ~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L 300 (302)
T KOG2345|consen 267 RYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL 300 (302)
T ss_pred CccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence 1455788899999999999999999999888754
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-11 Score=122.74 Aligned_cols=182 Identities=23% Similarity=0.229 Sum_probs=92.9
Q ss_pred CCccCcEEEccccCCCCCCc-hhhhcCCCCCEEEccCCCCCC--CcchhhcCCCCCcEEEccCCCCCCCCCcc-ccCCCC
Q 004413 44 NLAKLEQLYLNSWGAGGEIP-STYAKLRNMQTLWASDAPFTG--KIPDFIGNWTKLKSLRFQGNSFQGPIPSS-LSKLAS 119 (755)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~ 119 (755)
++.+|+++.|.++.+..... .....|++++.|||+.|-+.. .+......|++|+.|+|+.|++.-..... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34555555555554421111 234455566666666655442 12233345566666666666554221111 113455
Q ss_pred CCeeecCCCCCCCCChh-hhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCC-cccccCCCCCCEEEc
Q 004413 120 LDSLRISDIYNVSSSLD-FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI-PRTLFNIGSLNYLFL 197 (755)
Q Consensus 120 L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L 197 (755)
|+.|.|+.|.+...... .+..+|+|..|+|..|.....-.....-+..|+.|||++|++-+.. -.....++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66666666655533332 3345566666666666422222223344566677777777665321 134556666777777
Q ss_pred cCCcCCCC-CCc-------ccCCCCCEEEeecCcCC
Q 004413 198 GNNSLSGT-LPT-------QKSENLQNIDLSYNHLS 225 (755)
Q Consensus 198 s~N~l~~~-~p~-------~~~~~L~~L~Ls~N~l~ 225 (755)
+.|.+... .|. ..+++|++|+++.|+|.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 77766642 121 12367777777777764
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-10 Score=122.12 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=38.6
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
..+|||||++.+..++.++|||||||+++||+||+.|+.....
T Consensus 199 t~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~ 241 (360)
T cd05627 199 TPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETP 241 (360)
T ss_pred CccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCH
Confidence 3569999999999999999999999999999999999976543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=119.53 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=38.0
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
..+|+|||++....++.++|||||||+++||+||+.|+....
T Consensus 211 t~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (377)
T cd05629 211 TPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSEN 252 (377)
T ss_pred CccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCC
Confidence 356999999999999999999999999999999999987544
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-10 Score=121.45 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh-HHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME-KIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+-|||||++.+..|+..+|.||+|||++|++.|-+|+....+.+ -..++.|...+..... .....+
T Consensus 352 PDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~-------------~~~s~e 418 (550)
T KOG0605|consen 352 PDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEE-------------VDLSDE 418 (550)
T ss_pred ccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCc-------------CcccHH
Confidence 46999999999999999999999999999999999998766544 2456666544322111 011134
Q ss_pred HHHHHHHhcccCCCCCCC
Q 004413 648 VIGVALLCTQASPMMRPP 665 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPs 665 (755)
..+++.+|+- +|++|--
T Consensus 419 A~DLI~rll~-d~~~RLG 435 (550)
T KOG0605|consen 419 AKDLITRLLC-DPENRLG 435 (550)
T ss_pred HHHHHHHHhc-CHHHhcC
Confidence 5566667776 8999965
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-11 Score=119.76 Aligned_cols=231 Identities=19% Similarity=0.222 Sum_probs=166.6
Q ss_pred hhhcCCCCCCEEEccCccCCCC----CcccccCCccCcEEEcccc---CCCCCCchh-------hhcCCCCCEEEccCCC
Q 004413 16 RELGNLKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYLNSW---GAGGEIPST-------YAKLRNMQTLWASDAP 81 (755)
Q Consensus 16 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~p~~-------~~~l~~L~~L~L~~n~ 81 (755)
+.+..+..++.|+|++|.+... +...+.+.++|+..++++- ++..++|.. +..++.|++|+||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4456778999999999988632 4445667788888888752 122334443 4466799999999999
Q ss_pred CCCCcch----hhcCCCCCcEEEccCCCCCCCCCc-------------cccCCCCCCeeecCCCCCCCCChh----hhcC
Q 004413 82 FTGKIPD----FIGNWTKLKSLRFQGNSFQGPIPS-------------SLSKLASLDSLRISDIYNVSSSLD----FVMS 140 (755)
Q Consensus 82 l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~-------------~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 140 (755)
|....+. .+..+..|++|.|.+|.+...-.. -...-+.|+.+...+|.+...... .+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 8754443 345678999999999988722111 123447899999999888776553 5677
Q ss_pred CCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCCcc---
Q 004413 141 LKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPTQ--- 209 (755)
Q Consensus 141 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--- 209 (755)
.+.|+.+.+..|.|... +...+..+++|+.|||.+|-|+.. +...++.+++|+.|++++|.+...-...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 89999999999988633 334578899999999999999853 4456778899999999999998543322
Q ss_pred ----cCCCCCEEEeecCcCCCC----Cccccc---ccccccccccccc
Q 004413 210 ----KSENLQNIDLSYNHLSGP----FPSWVT---SNLQMNLVANNFT 246 (755)
Q Consensus 210 ----~~~~L~~L~Ls~N~l~g~----ip~~~~---~~~~l~l~~n~~~ 246 (755)
..++|++|.+.+|.|+-. +-..+. ....|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 247999999999999831 111111 2335899999884
|
|
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-10 Score=120.88 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=69.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|||||++..+.++.++|||||||+++|++| |+.|+......+ +. .....+... +.+..+...+
T Consensus 201 ~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 265 (314)
T cd05099 201 KWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEE---LF----KLLREGHRM--------DKPSNCTHEL 265 (314)
T ss_pred cccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 888876543221 11 122222111 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++.+|++.+|++||++.|+++.|+....
T Consensus 266 ~~li~~cl~~~p~~Rps~~~ll~~l~~~~~ 295 (314)
T cd05099 266 YMLMRECWHAVPTQRPTFKQLVEALDKVLA 295 (314)
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-10 Score=121.79 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=64.8
Q ss_pred ccccchhhhhcCC--CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGH--LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~--~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+..+.. .+.++||||||++++||+||+.|+...... ....++....... ++.. +.....
T Consensus 170 ~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--~~~~~~~~~~~~~-------~~~~---~~~~~~ 237 (288)
T cd05583 170 IEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ--NSQSEISRRILKS-------KPPF---PKTMSA 237 (288)
T ss_pred ccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc--chHHHHHHHHHcc-------CCCC---CcccCH
Confidence 4699999987765 789999999999999999999997532111 1111122221111 1111 111223
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+.++...|++.+|++|||+.+|.+.|+.
T Consensus 238 ~l~~li~~~l~~~p~~R~t~~~~~~~l~~ 266 (288)
T cd05583 238 EARDFIQKLLEKDPKKRLGANGADEIKNH 266 (288)
T ss_pred HHHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence 46678899999999999999999888764
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.3e-10 Score=121.30 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=37.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
..|||||++.+..++.++|||||||+++||+||+.|+....
T Consensus 212 ~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (382)
T cd05625 212 PNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT 252 (382)
T ss_pred cccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence 56999999999999999999999999999999999997654
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-10 Score=109.78 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|||||.+. ..+|..++|||||||.|.||.||+-||..-.-+-+ . ....+.+ . -|.+... ..-.
T Consensus 255 ~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe--~---ltkvln~--e----PP~L~~~-~gFS 322 (391)
T KOG0983|consen 255 AAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFE--V---LTKVLNE--E----PPLLPGH-MGFS 322 (391)
T ss_pred ccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHH--H---HHHHHhc--C----CCCCCcc-cCcC
Confidence 4699999885 45889999999999999999999999975321110 1 1111111 1 1333110 1123
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+....|++.|+.+||.-.++++
T Consensus 323 p~F~~fv~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 323 PDFQSFVKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred HHHHHHHHHHhhcCcccCcchHHHhc
Confidence 35777888999999999999988764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-10 Score=117.20 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=148.0
Q ss_pred eEEecCCcCcCC----CchhhcCCCCCCEEEccCccC---CCCCcc-------cccCCccCcEEEccccCCCCCCch---
Q 004413 2 LLSVAHNVFSGS----VPRELGNLKELTVLSFGNNNF---SGTLPP-------EIGNLAKLEQLYLNSWGAGGEIPS--- 64 (755)
Q Consensus 2 ~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l---~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~p~--- 64 (755)
.|+|++|.|... +...+.+.++|+..++++--. ...+|+ .+..+++|++|+||.|-+....+.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 578888888633 334566677888888876421 123343 344567888888888887644443
Q ss_pred -hhhcCCCCCEEEccCCCCCCCc-------------chhhcCCCCCcEEEccCCCCCCC----CCccccCCCCCCeeecC
Q 004413 65 -TYAKLRNMQTLWASDAPFTGKI-------------PDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRIS 126 (755)
Q Consensus 65 -~~~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~ 126 (755)
-+..+..|++|+|.+|.+...- ....+.-+.|+++..++|++... +...|...+.|+.+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS 193 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence 3456788888888888775211 11223346788888888887632 23345667788888888
Q ss_pred CCCCCCCCh----hhhcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCCCcccc-----cCCCCCC
Q 004413 127 DIYNVSSSL----DFVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQIPRTL-----FNIGSLN 193 (755)
Q Consensus 127 ~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~ 193 (755)
.|.+..... ..+..+++|+.|+|++|.++.. +...+..+++|+.|++++|.+...-..++ ...++|+
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 877665444 3567788888888888887643 34456677888888888888875433332 2467888
Q ss_pred EEEccCCcCCCCC------CcccCCCCCEEEeecCcCC
Q 004413 194 YLFLGNNSLSGTL------PTQKSENLQNIDLSYNHLS 225 (755)
Q Consensus 194 ~L~Ls~N~l~~~~------p~~~~~~L~~L~Ls~N~l~ 225 (755)
.|.|.+|.++..- +..-.+.|..|+|++|.+.
T Consensus 274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8888888887421 1112367888888888884
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-10 Score=120.58 Aligned_cols=207 Identities=20% Similarity=0.199 Sum_probs=148.2
Q ss_pred cCCCCCCEEEccCccCCCCCc--ccccCCccCcEEEccccCCCCCCc--hhhhcCCCCCEEEccCCCCCCCcchh-hcCC
Q 004413 19 GNLKELTVLSFGNNNFSGTLP--PEIGNLAKLEQLYLNSWGAGGEIP--STYAKLRNMQTLWASDAPFTGKIPDF-IGNW 93 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l 93 (755)
.++.+|+...|.++.+. ..+ .....|++++.|||+.|-+..-.+ .....|++|+.|+|+.|++.-..... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788999999988875 333 246678999999999988865333 34568899999999999876322211 1246
Q ss_pred CCCcEEEccCCCCCCC-CCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC-CccccCCCCCCEE
Q 004413 94 TKLKSLRFQGNSFQGP-IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI-PSGIGELQNLQTL 171 (755)
Q Consensus 94 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L 171 (755)
+.|+.|.|+.|.++.. +-..+..+++|+.|+|..|...........-+..|+.|+|++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7899999999988832 2334566889999999988644444444456677899999999876432 2356788999999
Q ss_pred eCCCCCCCCC-Cccc-----ccCCCCCCEEEccCCcCCCCCCc---ccCCCCCEEEeecCcCCC
Q 004413 172 DLSFNNLTGQ-IPRT-----LFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSG 226 (755)
Q Consensus 172 ~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~p~---~~~~~L~~L~Ls~N~l~g 226 (755)
+++.+.+... .|+. ....++|++|++..|++...... ..+++|+.|.+..|.|+-
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999988752 2322 34678999999999999643322 234788888888888873
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.8e-10 Score=126.99 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCccceeeeehheeehhhhCCcCCCCCchhh-------HHHHHHHHHHHhhcCccccccCCCCC---CCCHHHHHHHHHH
Q 004413 582 LTEKADVFSFGVAALEIISGRANSDNSLDME-------KIYLLEWAWNLHENNQSLGLVDPTLT---EFNDKEALRVIGV 651 (755)
Q Consensus 582 ~t~ksDVysfGvvllElltg~~p~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~d~~l~---~~~~~~~~~~~~l 651 (755)
++.|+|||||||+|+||+++..+.+.....- ...+..|....... ..+.+. +..........++
T Consensus 356 ~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~dL 429 (566)
T PLN03225 356 LPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPR------ASPDLRRGFEVLDLDGGAGWEL 429 (566)
T ss_pred CCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccc------cchhhhhhhhhccccchHHHHH
Confidence 4567899999999999999876654211000 00122222111100 000000 0000111234578
Q ss_pred HHHhcccCCCCCCCHHHHHH
Q 004413 652 ALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 652 ~~~C~~~~p~~RPsm~~v~~ 671 (755)
...|++.+|++|||+.|+++
T Consensus 430 i~~mL~~dP~kR~ta~e~L~ 449 (566)
T PLN03225 430 LKSMMRFKGRQRISAKAALA 449 (566)
T ss_pred HHHHccCCcccCCCHHHHhC
Confidence 99999999999999999975
|
|
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-10 Score=116.99 Aligned_cols=91 Identities=31% Similarity=0.411 Sum_probs=67.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||......++.++||||+||+++|+++ |+.|+......+ +.+. ...+... ..+.....+
T Consensus 171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~----~~~~~~~--------~~~~~~~~~ 235 (262)
T cd00192 171 IRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE---VLEY----LRKGYRL--------PKPEYCPDE 235 (262)
T ss_pred ccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHH---HHHH----HHcCCCC--------CCCccCChH
Confidence 57999999998899999999999999999999 688887653221 2221 2211111 112222456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++..|++.+|++||++.|++..|+
T Consensus 236 ~~~li~~~l~~~p~~Rps~~~l~~~l~ 262 (262)
T cd00192 236 LYELMLSCWQLDPEDRPTFSELVERLE 262 (262)
T ss_pred HHHHHHHHccCCcccCcCHHHHHHhhC
Confidence 788999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-10 Score=122.54 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=61.9
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh-----------cCccccccC---
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE-----------NNQSLGLVD--- 634 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~d--- 634 (755)
.|+|||.... ..++.++|||||||+++|++||+.|+......+. ......... .......+.
T Consensus 180 ~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd07851 180 WYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQ---LKRIMNLVGTPDEELLQKISSESARNYIQSLP 256 (343)
T ss_pred cccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHhcCCCCHHHHhhccchhHHHHHHhcc
Confidence 5999998865 4688999999999999999999999865433211 111111000 000000000
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 ----PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ----~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+...+........+.+++..|++.+|++|||+.||++
T Consensus 257 ~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~ 297 (343)
T cd07851 257 QMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA 297 (343)
T ss_pred ccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence 0000000112356788999999999999999999864
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-10 Score=107.25 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.-|++||+..+...+.+.|+|+.||+.+|++.|.+||......+ ..+.+++ .++.+| ..-...+
T Consensus 186 ~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e-------tYkrI~k---~~~~~p------~~is~~a 249 (281)
T KOG0580|consen 186 LDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE-------TYKRIRK---VDLKFP------STISGGA 249 (281)
T ss_pred cccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH-------HHHHHHH---ccccCC------cccChhH
Confidence 56999999999999999999999999999999999997543211 1122211 223333 1223356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|+..+|.+|.+..||+.
T Consensus 250 ~dlI~~ll~~~p~~r~~l~~v~~ 272 (281)
T KOG0580|consen 250 ADLISRLLVKNPIERLALTEVMD 272 (281)
T ss_pred HHHHHHHhccCccccccHHHHhh
Confidence 67889999999999999999975
|
|
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-10 Score=118.01 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=62.3
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++..+ .++.++|||||||+++||+||+.|++......... ...... ..++.+ +......
T Consensus 159 ~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~----~~~~~~------~~~~~~---~~~~s~~ 225 (278)
T cd05606 159 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDRMTL------TMAVEL---PDSFSPE 225 (278)
T ss_pred cCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHH----HHHHhh------ccCCCC---CCcCCHH
Confidence 579999998755 68999999999999999999999987543221111 111111 011112 1122346
Q ss_pred HHHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 648 VIGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
+.++...|++.+|.+|| ++.++.+
T Consensus 226 ~~~li~~~l~~~p~~R~~~~~~~~~~ll~ 254 (278)
T cd05606 226 LRSLLEGLLQRDVNRRLGCLGRGAQEVKE 254 (278)
T ss_pred HHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence 77788899999999999 8888864
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-10 Score=105.63 Aligned_cols=108 Identities=24% Similarity=0.248 Sum_probs=30.6
Q ss_pred hcCCCCCCEEEccCccCCCCCccccc-CCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhh-cCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIG-NLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTK 95 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~ 95 (755)
+.+..+++.|+|++|.|+. + +.++ .+.+|+.|+|++|.|+.. +.+..+++|++|++++|+++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 4455567888888888763 3 2355 467788888888887643 246677788888888888773 43333 35777
Q ss_pred CcEEEccCCCCCCCC-CccccCCCCCCeeecCCCCC
Q 004413 96 LKSLRFQGNSFQGPI-PSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 96 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~ 130 (755)
|++|++++|++...- -..+..+++|+.|++.+|.+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 888888888776311 12334444555555544443
|
|
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-10 Score=128.73 Aligned_cols=88 Identities=23% Similarity=0.353 Sum_probs=59.1
Q ss_pred ccccchhhhhcCC---CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-hhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAMRGH---LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-HENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~~~---~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~d~~l~~~~~~~ 644 (755)
+-|||||.+.+.+ ---+.||||.|||++||+|||+|+..... +|+-.+ +..|.. | .+|..-
T Consensus 1402 ~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn-------e~aIMy~V~~gh~-----P---q~P~~l 1466 (1509)
T KOG4645|consen 1402 PMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN-------EWAIMYHVAAGHK-----P---QIPERL 1466 (1509)
T ss_pred chhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc-------hhHHHhHHhccCC-----C---CCchhh
Confidence 4699999987543 23578999999999999999999875433 344332 222221 2 223332
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+-.+..-.|++.||..|.+..|+++
T Consensus 1467 s~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1467 SSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred hHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence 333445667999999999988776643
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-09 Score=113.65 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=61.2
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
...|++||+.....++.++||||||++++|+++|+.|+....... .++...... +. ....++......
T Consensus 155 ~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~~~-~~-------~~~~~~~~~~~~ 222 (262)
T cd05572 155 TPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDP----MEIYNDILK-GN-------GKLEFPNYIDKA 222 (262)
T ss_pred CcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCH----HHHHHHHhc-cC-------CCCCCCcccCHH
Confidence 357999999988899999999999999999999999987544211 111111111 00 001112222456
Q ss_pred HHHHHHHhcccCCCCCCCH
Q 004413 648 VIGVALLCTQASPMMRPPM 666 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm 666 (755)
+.+++..||+.+|++||+|
T Consensus 223 ~~~~i~~~l~~~p~~R~~~ 241 (262)
T cd05572 223 AKDLIKQLLRRNPEERLGN 241 (262)
T ss_pred HHHHHHHHccCChhhCcCC
Confidence 8889999999999999994
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-10 Score=120.73 Aligned_cols=110 Identities=24% Similarity=0.246 Sum_probs=76.6
Q ss_pred HhcCCCCCCcccCCCCcceeeceeeeeecc----------------ccccchhhhhcCCCCccceeeeehheeehhhhCC
Q 004413 539 ATQDFDPSNKLGEGGYGPVYKKTQLMLSNF----------------HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGR 602 (755)
Q Consensus 539 at~~f~~~~~lg~g~fg~Vy~g~~~~i~df----------------~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~ 602 (755)
.++|++++|+|-.|.=|. ..++|| ..|.|||+.....+|+.+|+||+||+|+||+||+
T Consensus 437 vhRDLkp~NIL~~~~~g~------lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~ 510 (612)
T KOG0603|consen 437 VHRDLKPGNILLDGSAGH------LRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGR 510 (612)
T ss_pred eecCCChhheeecCCCCc------EEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCC
Confidence 456777777775433332 234444 5799999999999999999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 603 ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 603 ~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.|+.....+. . +...+..+... ..-.....+|.-+|++.+|.+||+|.++..
T Consensus 511 tp~~~~P~~~--e----i~~~i~~~~~s-----------~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 511 TLFAAHPAGI--E----IHTRIQMPKFS-----------ECVSDEAKDLLQQLLQVDPALRLGADEIGA 562 (612)
T ss_pred CccccCCchH--H----HHHhhcCCccc-----------cccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence 9987654431 1 22222222221 111223445778999999999999999863
|
|
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-10 Score=119.54 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred cccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh-----------cCccccccC---
Q 004413 570 GYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE-----------NNQSLGLVD--- 634 (755)
Q Consensus 570 gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~d--- 634 (755)
.|+|||++... .++.++||||||++++||+||+.|+......+.. ..+..... .....+.+.
T Consensus 171 ~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T cd07834 171 WYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQL---NLIVEVLGTPSEEDLKFITSEKARNYLKSLP 247 (330)
T ss_pred CcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHH---HHHHHhcCCCChhHhhhccccchhhHHhhcc
Confidence 49999999887 8999999999999999999999998765432211 11111100 000000000
Q ss_pred CC----CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH--HHhccc
Q 004413 635 PT----LTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA--MLAGDI 677 (755)
Q Consensus 635 ~~----l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~--~L~~~~ 677 (755)
.. +..........+.+++..|++.+|++||++.++++ .+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~ 296 (330)
T cd07834 248 KKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLH 296 (330)
T ss_pred cCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhc
Confidence 00 00011112345788999999999999999999986 355433
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-10 Score=119.19 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=37.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
+||||||++..++|+...|-||+||+|+||+.|+.|+...
T Consensus 350 ~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~ 389 (591)
T KOG0986|consen 350 VGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQR 389 (591)
T ss_pred ccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhh
Confidence 7999999999999999999999999999999999998643
|
|
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-10 Score=119.83 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=62.5
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HH--------HHHHHHHhhcC------ccccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YL--------LEWAWNLHENN------QSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l--------~~~~~~~~~~~------~~~~~ 632 (755)
..|+|||++.. ..++.++|||||||+++|+++|+.|+......... .+ .+|........ .+...
T Consensus 179 ~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
T cd07880 179 RWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRF 258 (343)
T ss_pred CcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhcccc
Confidence 35899998876 46899999999999999999999998754322110 00 01111100000 00000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-...+..........+.++..+|++.+|.+|||+.+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~ 297 (343)
T cd07880 259 RKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA 297 (343)
T ss_pred CcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 000000011112234778999999999999999999983
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-10 Score=120.49 Aligned_cols=88 Identities=16% Similarity=0.256 Sum_probs=62.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-+||||.+. ..|.+..||||||+-+|||+|+.-||..-.+.. -+++.+-.|.-.+.+. ..... ++
T Consensus 208 PEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A------QIYKKV~SGiKP~sl~----kV~dP---ev 273 (632)
T KOG0584|consen 208 PEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA------QIYKKVTSGIKPAALS----KVKDP---EV 273 (632)
T ss_pred ccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHH------HHHHHHHcCCCHHHhh----ccCCH---HH
Confidence 5699999776 899999999999999999999999997543322 2334443343222111 11222 34
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|+.. .++|||..|++.
T Consensus 274 r~fIekCl~~-~~~R~sa~eLL~ 295 (632)
T KOG0584|consen 274 REFIEKCLAT-KSERLSAKELLK 295 (632)
T ss_pred HHHHHHHhcC-chhccCHHHHhh
Confidence 5677799998 999999999975
|
|
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-10 Score=117.73 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=57.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.....+.++||||||++++||+||+.|+....... .......+.. .+ +......+
T Consensus 162 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------~~~~~~~~~~------~~---~~~~~~~l 225 (290)
T cd05580 162 PEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ-------IYEKILEGKV------RF---PSFFSPDA 225 (290)
T ss_pred ccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH-------HHHHHhcCCc------cC---CccCCHHH
Confidence 57999999988899999999999999999999999986543211 1111111111 11 11113456
Q ss_pred HHHHHHhcccCCCCCC
Q 004413 649 IGVALLCTQASPMMRP 664 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP 664 (755)
.++...|++.+|.+||
T Consensus 226 ~~li~~~l~~~p~~R~ 241 (290)
T cd05580 226 KDLIRNLLQVDLTKRL 241 (290)
T ss_pred HHHHHHHccCCHHHcc
Confidence 6788999999999998
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-10 Score=115.92 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=61.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+..++.++.++|||||||+++|+++|+.|+......... +.+...... ... ..+......+
T Consensus 158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~---~~~~~~~~~------~~~---~~~~~~~~~~ 225 (277)
T cd05577 158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEK---EELKRRTLE------MAV---EYPDKFSPEA 225 (277)
T ss_pred CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccH---HHHHhcccc------ccc---cCCccCCHHH
Confidence 4799999999889999999999999999999999998654321100 001110000 000 1111223356
Q ss_pred HHHHHHhcccCCCCCCCHHH-HHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSR-VVAML 673 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~-v~~~L 673 (755)
.++...|++.+|++||+..+ .+..|
T Consensus 226 ~~li~~~l~~~p~~R~~~~~~~~~~l 251 (277)
T cd05577 226 KDLCEALLQKDPEKRLGCRGGSADEV 251 (277)
T ss_pred HHHHHHHccCChhHccCCCcccHHHH
Confidence 78889999999999996665 44444
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-10 Score=120.78 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HH--------HHHHHHhhcC------ccccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LL--------EWAWNLHENN------QSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~--------~~~~~~~~~~------~~~~~ 632 (755)
..|+|||+..+ ..++.++|||||||+++|+++|+.|+......+... +. ++........ .....
T Consensus 173 ~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (332)
T cd07857 173 RWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNI 252 (332)
T ss_pred ccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhcccc
Confidence 45999998866 468999999999999999999999986543211100 00 0000000000 00000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
-...+..........+.+++.+|++.+|.+|||+.|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll 290 (332)
T cd07857 253 PKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEAL 290 (332)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 00000000111234677899999999999999999986
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-09 Score=114.46 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=62.5
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH-----HHhhcCccc--cccCCCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW-----NLHENNQSL--GLVDPTLTEF 640 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~-----~~~~~~~~~--~~~d~~l~~~ 640 (755)
.-|.|||.+.+ ..|+...|+||.||||.||++||..+......+....+--.. ..|...++. ..+-+.- .+
T Consensus 283 LWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~-~y 361 (560)
T KOG0600|consen 283 LWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQ-PY 361 (560)
T ss_pred eeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCC-cc
Confidence 45999998876 689999999999999999999999988766544332221110 111111111 1111111 11
Q ss_pred CH--HH-----HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 641 ND--KE-----ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 641 ~~--~~-----~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. .| ....++|.-.-+..||++|.|+.++++
T Consensus 362 ~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~ 399 (560)
T KOG0600|consen 362 KRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ 399 (560)
T ss_pred cchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence 11 00 123455655667779999999998874
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-09 Score=103.85 Aligned_cols=120 Identities=26% Similarity=0.342 Sum_probs=52.0
Q ss_pred CeEEecCCcCcCCCchhhc-CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhh-hcCCCCCEEEcc
Q 004413 1 MLLSVAHNVFSGSVPRELG-NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTY-AKLRNMQTLWAS 78 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~ 78 (755)
+.|+|.+|+|+. + +.++ .+.+|+.|+|++|.|+. +. .+..+++|++|++++|.|+.. ...+ ..+++|++|+++
T Consensus 22 ~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 22 RELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred cccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECc
Confidence 468999999983 3 3466 58899999999999984 43 488899999999999999764 3344 579999999999
Q ss_pred CCCCCCC-cchhhcCCCCCcEEEccCCCCCCCCCc----cccCCCCCCeeecC
Q 004413 79 DAPFTGK-IPDFIGNWTKLKSLRFQGNSFQGPIPS----SLSKLASLDSLRIS 126 (755)
Q Consensus 79 ~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~ 126 (755)
+|++... .-..+..+++|++|+|.+|.++.. +. .+..+++|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 9999742 235678899999999999998732 22 35567777777654
|
|
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-09 Score=113.39 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=60.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+.....++.++|||||||+++|++||+.|+........ + ....... ..+. .+......+
T Consensus 173 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~----~~~~~~~-----~~~~---~p~~~~~~~ 238 (264)
T cd06653 173 PYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAA--I----FKIATQP-----TKPM---LPDGVSDAC 238 (264)
T ss_pred ccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHH--H----HHHHcCC-----CCCC---CCcccCHHH
Confidence 469999999988899999999999999999999999865432211 1 1111110 0111 122233456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++ +|..||+..++..
T Consensus 239 ~~~i~~~l~-~~~~r~~~~~~~~ 260 (264)
T cd06653 239 RDFLKQIFV-EEKRRPTAEFLLR 260 (264)
T ss_pred HHHHHHHhc-CcccCccHHHHhc
Confidence 778889998 5799999997653
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-09 Score=111.84 Aligned_cols=89 Identities=26% Similarity=0.337 Sum_probs=63.1
Q ss_pred ccccchhhhhcC--CCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRG--HLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~--~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||++... .++.++|||||||++|||++ |..|+......+ +... +..... + +....
T Consensus 168 ~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~------~~~~-~~~~~~-------~---~~~~~ 230 (259)
T cd05037 168 IPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSE------KERF-YQDQHR-------L---PMPDC 230 (259)
T ss_pred CCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchh------HHHH-HhcCCC-------C---CCCCc
Confidence 579999998876 89999999999999999999 466665432211 1111 111100 0 00111
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
..+.+++..|++.+|++||+|.+|++.|+
T Consensus 231 ~~~~~li~~~l~~~p~~Rpt~~~il~~l~ 259 (259)
T cd05037 231 AELANLINQCWTYDPTKRPSFRAILRDLN 259 (259)
T ss_pred hHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence 57788999999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-09 Score=105.24 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=64.3
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhc-CccccccCCCCCC
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHEN-NQSLGLVDPTLTE 639 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~-~~~~~~~d~~l~~ 639 (755)
-|.|||.+.+ .+|....|||+.|+|+.||+||..-+....+-+...+..-. ++.+.. .-...+.=|...+
T Consensus 166 WYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~ 245 (396)
T KOG0593|consen 166 WYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEH 245 (396)
T ss_pred hccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCC
Confidence 4899998886 89999999999999999999999776554443332222111 111111 1111111111110
Q ss_pred ------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 640 ------FNDKEALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 640 ------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
--+.-..-++.++..|++.||++|++-+|.+
T Consensus 246 ~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll 282 (396)
T KOG0593|consen 246 PEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL 282 (396)
T ss_pred ccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence 0111223578899999999999999998886
|
|
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-09 Score=117.04 Aligned_cols=96 Identities=25% Similarity=0.358 Sum_probs=63.0
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccC------------
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVD------------ 634 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d------------ 634 (755)
..|+|||++.. ..++.++|||||||+++||+||+.|++...... ...... .+.....+|
T Consensus 172 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 244 (327)
T cd08227 172 LPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ--MLLEKL-----NGTVPCLLDTTTIPAEELTMK 244 (327)
T ss_pred ecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhH--HHHHHh-----cCCccccccccchhhhhcccC
Confidence 46999999876 468999999999999999999999987543211 111110 011110000
Q ss_pred -------CCC------------------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 -------PTL------------------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 -------~~l------------------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+ ..........+.+++..|++.+|++|||+.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~ 306 (327)
T cd08227 245 PSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN 306 (327)
T ss_pred CcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence 000 0011112346778999999999999999999975
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-10 Score=113.59 Aligned_cols=131 Identities=25% Similarity=0.277 Sum_probs=70.1
Q ss_pred CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
.+..|+.|||++|.|+ .+.++..-++.++.|++++|.|.... .++.+.+|+.|||++|.++ .+...-.+|.+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3445555555555554 44444444555555555555554321 2455555555555555554 222222334455555
Q ss_pred EccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCC-CCccccCCCCCCEEeCCCCCC
Q 004413 100 RFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS-IPSGIGELQNLQTLDLSFNNL 178 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l 178 (755)
.|+.|.+. . ...+.++-+|..|++++|+|... --..+++++.|+.|.|.+|.+
T Consensus 358 ~La~N~iE------------------------~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIE------------------------T--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHh------------------------h--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 55555543 1 11233444555666666665422 133678888888888888888
Q ss_pred CC
Q 004413 179 TG 180 (755)
Q Consensus 179 ~~ 180 (755)
.+
T Consensus 412 ~~ 413 (490)
T KOG1259|consen 412 AG 413 (490)
T ss_pred cc
Confidence 84
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-09 Score=114.38 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=35.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
-|.|||++.+.+|+++.|+||||||+.||+||..-+.+..
T Consensus 353 fYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~n 392 (586)
T KOG0667|consen 353 FYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDN 392 (586)
T ss_pred ccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCC
Confidence 5999999999999999999999999999999965554433
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-09 Score=114.25 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=59.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~ 648 (755)
-|++||.+..+..+..+|+|+|||+|+.|+.|+.|+....+ ..+.+-+.. +|=.+ ..++ ..+
T Consensus 252 eYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne---yliFqkI~~----------l~y~fp~~fp----~~a 314 (604)
T KOG0592|consen 252 EYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE---YLIFQKIQA----------LDYEFPEGFP----EDA 314 (604)
T ss_pred cccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH---HHHHHHHHH----------hcccCCCCCC----HHH
Confidence 49999999999999999999999999999999999975432 111111111 11111 1222 344
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+|...-+-.+|.+|++..|+.+
T Consensus 315 ~dLv~KLLv~dp~~Rlt~~qIk~ 337 (604)
T KOG0592|consen 315 RDLIKKLLVRDPSDRLTSQQIKA 337 (604)
T ss_pred HHHHHHHHccCccccccHHHHhh
Confidence 45555667889999999988764
|
|
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-09 Score=114.44 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=62.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||......++.++||||||++++|++||+.|+....... ....+ .. .. . ..+......+
T Consensus 186 ~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~~~---~~-~~------~---~~~~~~~~~~ 249 (280)
T cd05581 186 AEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL---TFQKI---LK-LE------Y---SFPPNFPPDA 249 (280)
T ss_pred ccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH---HHHHH---Hh-cC------C---CCCCccCHHH
Confidence 56999999998999999999999999999999999987543211 11111 11 00 0 1112224467
Q ss_pred HHHHHHhcccCCCCCCCH----HHHH
Q 004413 649 IGVALLCTQASPMMRPPM----SRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm----~~v~ 670 (755)
.+++..|++.+|++||++ .++.
T Consensus 250 ~~li~~~l~~~p~~R~~~~~~~~~ll 275 (280)
T cd05581 250 KDLIEKLLVLDPQDRLGVNEGYDELK 275 (280)
T ss_pred HHHHHHHhcCCHhhCCCcccCHHHHh
Confidence 889999999999999999 6654
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-09 Score=101.39 Aligned_cols=121 Identities=22% Similarity=0.336 Sum_probs=85.0
Q ss_pred CHHHHHHHhcCCCCCCcccCCCCcceeeceeeeeecc------------------ccccchhhhhc-C-CCCccceeeee
Q 004413 532 SYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNF------------------HGYLAPEYAMR-G-HLTEKADVFSF 591 (755)
Q Consensus 532 ~~~el~~at~~f~~~~~lg~g~fg~Vy~g~~~~i~df------------------~gy~aPE~~~~-~-~~t~ksDVysf 591 (755)
.-++++..+.|.+++|+|-.+. |. .+++|| .-|||||.+.. . -|..+|||||+
T Consensus 183 LK~~lkiIHRDvKPSNILldr~-G~------vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSL 255 (361)
T KOG1006|consen 183 LKEELKIIHRDVKPSNILLDRH-GD------VKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSL 255 (361)
T ss_pred HHHHhhhhhccCChhheEEecC-CC------EeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhh
Confidence 3467889999999999986542 33 457777 35999998753 3 48999999999
Q ss_pred hheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH---HHHHHHHHHHHhcccCCCCCCCHHH
Q 004413 592 GVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK---EALRVIGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 592 GvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~---~~~~~~~l~~~C~~~~p~~RPsm~~ 668 (755)
||.|+|+.||+-|+..... +.+.+...+. | ||.+...+.+ -...+....-.|+-.+..+||...+
T Consensus 256 GITL~EvAtG~fPyr~w~s-----vfeql~~Vv~-g------dpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~ 323 (361)
T KOG1006|consen 256 GITLYEVATGNFPYRKWDS-----VFEQLCQVVI-G------DPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDD 323 (361)
T ss_pred cceEeeeecCCCCcchHHH-----HHHHHHHHHc-C------CCCeecCcccccccCHHHHHHHHHHhhcccccCcchhh
Confidence 9999999999999874321 2233333221 2 3332112222 3346777788999999999999988
Q ss_pred HHH
Q 004413 669 VVA 671 (755)
Q Consensus 669 v~~ 671 (755)
+.+
T Consensus 324 Lk~ 326 (361)
T KOG1006|consen 324 LKK 326 (361)
T ss_pred hhc
Confidence 754
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-09 Score=127.84 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=65.7
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
++..|||||++.+..++.++|||||||+||||+||+.|+...... ++....+.. . +-.+.. ......
T Consensus 542 GT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~------~~~~~il~~-~---~~~p~~---~~~~~~ 608 (669)
T cd05610 542 GTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQ------QVFQNILNR-D---IPWPEG---EEKLSV 608 (669)
T ss_pred eCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH------HHHHHHHhc-C---CCCCcc---cccCCH
Confidence 457899999999999999999999999999999999998754322 122222211 1 001111 112234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.++...|++.+|.+||+|.||++
T Consensus 609 ~~~~~l~~lL~~dP~~R~ta~e~l~ 633 (669)
T cd05610 609 NAQNAIEILLTMDPTKRAGLKELKQ 633 (669)
T ss_pred HHHHHHHHHcccChhHCcCHHHHHh
Confidence 5667788899999999999999986
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-09 Score=111.30 Aligned_cols=90 Identities=29% Similarity=0.448 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||+.....++.++||||+|++++||++ |+.|+...... .+.+++ ..+... ..+.....+
T Consensus 168 ~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~---~~~~~~----~~~~~~--------~~~~~~~~~ 232 (258)
T smart00219 168 IRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNE---EVLEYL----KKGYRL--------PKPENCPPE 232 (258)
T ss_pred ccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH----hcCCCC--------CCCCcCCHH
Confidence 57999999988999999999999999999999 77777653221 122222 111111 111123446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
+.+++.+|+..+|++|||+.|++++|
T Consensus 233 ~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 233 IYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred HHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 78899999999999999999998764
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-09 Score=110.15 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=60.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|++||...+...+.++||||||++++|+++|+.|+...... .+...+ .. +. ..+ +......+
T Consensus 157 ~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~---~~~~~~---~~-~~------~~~---~~~~~~~l 220 (250)
T cd05123 157 PEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRK---EIYEKI---LK-DP------LRF---PEFLSPEA 220 (250)
T ss_pred ccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH---hc-CC------CCC---CCCCCHHH
Confidence 5799999999888999999999999999999999998654321 111111 11 11 111 11123456
Q ss_pred HHHHHHhcccCCCCCCCHHH
Q 004413 649 IGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~ 668 (755)
.+++..|+..+|++||++.+
T Consensus 221 ~~~i~~~l~~~p~~R~~~~~ 240 (250)
T cd05123 221 RDLISGLLQKDPTKRLGSGG 240 (250)
T ss_pred HHHHHHHhcCCHhhCCCccc
Confidence 78899999999999999965
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-09 Score=113.26 Aligned_cols=101 Identities=23% Similarity=0.315 Sum_probs=64.9
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHH----------------Hh------
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN----------------LH------ 624 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~----------------~~------ 624 (755)
..|||||++.+ ..++.++|||||||+++|+++|+.|+........ +...... ..
T Consensus 172 ~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (328)
T cd08226 172 LPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQM--LLQKLKGPPYSPLDITTFPCEESRMKNSQSG 249 (328)
T ss_pred cCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHH--HHHHhcCCCCCCccccccchhhhhhccchhh
Confidence 46999999876 4578999999999999999999999875432211 1111000 00
Q ss_pred ----------hcCccccccCCCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 625 ----------ENNQSLGLVDPTL-TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 625 ----------~~~~~~~~~d~~l-~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+....+.+..+ ..........+.+++.+|++.+|++|||+.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~ 307 (328)
T cd08226 250 VDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS 307 (328)
T ss_pred hhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 0000001111111 1112234567889999999999999999999974
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-10 Score=124.40 Aligned_cols=197 Identities=27% Similarity=0.243 Sum_probs=128.7
Q ss_pred CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
.+..++.+++..|.+. .+-..+..+.+|+.|++.+|.|.... ..+..+.+|++|+|++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhh
Confidence 4566777777777776 33444677778888888888775432 22667788888888888877432 35556668888
Q ss_pred EccCCCCCCCCCccccCCCCCCeeecCCCCCCCCCh-hhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCC
Q 004413 100 RFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 178 (755)
++++|.++. ...+..+++|+.+++++|.+..... . ...+.+|+.+.+.+|.+.. ...+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence 888888762 2345557788888888777665544 3 4667777888888887762 22344455555667777777
Q ss_pred CCCCcccccCCC--CCCEEEccCCcCCCC-CCcccCCCCCEEEeecCcCCCC
Q 004413 179 TGQIPRTLFNIG--SLNYLFLGNNSLSGT-LPTQKSENLQNIDLSYNHLSGP 227 (755)
Q Consensus 179 ~~~~p~~l~~l~--~L~~L~Ls~N~l~~~-~p~~~~~~L~~L~Ls~N~l~g~ 227 (755)
+..-+ +..+. +|+.+++++|++... -.......+..|++.+|.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 63221 22222 377888888888744 2333456777888888887743
|
|
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-09 Score=111.95 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=56.1
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||+... ..++.++|||||||+++||+||+.|+...... ....++........ + .++.....
T Consensus 170 ~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~-------~---~~~~~~~~ 237 (290)
T cd05613 170 IEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEK--NSQAEISRRILKSE-------P---PYPQEMSA 237 (290)
T ss_pred cccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcc--ccHHHHHHHhhccC-------C---CCCccCCH
Confidence 56999999875 34788999999999999999999998642211 11222222221111 1 11222234
Q ss_pred HHHHHHHHhcccCCCCCC
Q 004413 647 RVIGVALLCTQASPMMRP 664 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RP 664 (755)
.+.++...|++.+|++||
T Consensus 238 ~~~~ll~~~l~~~p~~R~ 255 (290)
T cd05613 238 LAKDIIQRLLMKDPKKRL 255 (290)
T ss_pred HHHHHHHHHhcCCHHHhc
Confidence 567889999999999997
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-09 Score=107.57 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=66.8
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-------hhc--CccccccCCCCCC
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-------HEN--NQSLGLVDPTLTE 639 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-------~~~--~~~~~~~d~~l~~ 639 (755)
-|.|||.+.+ ..||.+.||||-|+|+.||+-|+.-+.+.... ..+++.+.-+ +.. .+..+.-.|.+..
T Consensus 190 yYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~--dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~ 267 (364)
T KOG0658|consen 190 YYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSV--DQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKA 267 (364)
T ss_pred cccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHH--HHHHHHHHHhCCCCHHHHhhcCcccccccCccccc
Confidence 4999998875 68999999999999999999999887654332 2233332211 111 1111222333321
Q ss_pred ------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 ------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 ------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+......+.+++..+|++.+|.+|-+..|++.
T Consensus 268 ~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~ 305 (364)
T KOG0658|consen 268 HPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA 305 (364)
T ss_pred ccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence 12233456788999999999999999998874
|
|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-09 Score=125.70 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=64.2
Q ss_pred cccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 568 FHGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 568 f~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.+.|+|||++.. ..++.++|||||||+||||+||+.|+....... .++ ..+..+. +..+... .
T Consensus 204 Tp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~-----qli-~~lk~~p-----~lpi~~~----S 268 (1021)
T PTZ00266 204 TPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFS-----QLI-SELKRGP-----DLPIKGK----S 268 (1021)
T ss_pred CccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH-----HHH-HHHhcCC-----CCCcCCC----C
Confidence 368999999854 568999999999999999999999987533211 111 1122111 1111111 2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHH--HHHh
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVV--AMLA 674 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~--~~L~ 674 (755)
..+.+++..||+.+|.+||++.|++ ..+.
T Consensus 269 ~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik 299 (1021)
T PTZ00266 269 KELNILIKNLLNLSAKERPSALQCLGYQIIK 299 (1021)
T ss_pred HHHHHHHHHHhcCChhHCcCHHHHhccHHHh
Confidence 4577889999999999999999998 3454
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-09 Score=101.99 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=63.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|||||+++..+|+..+|||+-||+|+-|+.|+.|+...... . ..+.+..|... +++.-.+.-.++++
T Consensus 176 P~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~---r----lye~I~~g~yd--~~~~~w~~is~~Ak-- 244 (355)
T KOG0033|consen 176 PGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH---R----LYEQIKAGAYD--YPSPEWDTVTPEAK-- 244 (355)
T ss_pred CcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHH---H----HHHHHhccccC--CCCcccCcCCHHHH--
Confidence 7899999999999999999999999999999999998753221 1 22223333321 22222111223333
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.|..+.+..+|.+|-|..|.++
T Consensus 245 -~LvrrML~~dP~kRIta~EAL~ 266 (355)
T KOG0033|consen 245 -SLIRRMLTVNPKKRITADEALK 266 (355)
T ss_pred -HHHHHHhccChhhhccHHHHhC
Confidence 4556778899999999988864
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-09 Score=112.23 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=63.7
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH----hh-------cCcccc----
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL----HE-------NNQSLG---- 631 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~----~~-------~~~~~~---- 631 (755)
..|+|||++.. ..++.++|||||||+++|+++|+.|+....... .+.+-.... +. ......
T Consensus 172 ~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (314)
T cd08216 172 LPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQ--MLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSS 249 (314)
T ss_pred ccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhccCccccccCchhhhcCCcCccccc
Confidence 57999999875 458899999999999999999999987543221 111111100 00 000000
Q ss_pred ccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 632 LVDPTL-----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 632 ~~d~~l-----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++.. ..........+.+++..||+.+|++|||+.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~ 294 (314)
T cd08216 250 NEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN 294 (314)
T ss_pred ccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence 111111 0011122346778999999999999999999975
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-09 Score=129.39 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=60.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.+..++.|+|||||||+|+||++|..|+... ...+..+... .+++.. .....+.
T Consensus 179 ~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~----~~~~~~~~~~---------~~~~~~----~~~~~~~ 241 (793)
T PLN00181 179 SWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK----SRTMSSLRHR---------VLPPQI----LLNWPKE 241 (793)
T ss_pred cceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH----HHHHHHHHHh---------hcChhh----hhcCHHH
Confidence 5699999999999999999999999999999998875421 1111111111 111111 1122345
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++.+|++.+|.+||+|.||++
T Consensus 242 ~~~~~~~L~~~P~~Rps~~eil~ 264 (793)
T PLN00181 242 ASFCLWLLHPEPSCRPSMSELLQ 264 (793)
T ss_pred HHHHHHhCCCChhhCcChHHHhh
Confidence 57788999999999999999975
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=104.97 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=72.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHH--------------HHHHhhcCcc-----
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEW--------------AWNLHENNQS----- 629 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~--------------~~~~~~~~~~----- 629 (755)
.-|.|||++.+-..+.++||||+|++|.|+.||..-++...+.+..-+.+- +.+....|++
T Consensus 273 RHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~ 352 (415)
T KOG0671|consen 273 RHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEV 352 (415)
T ss_pred cccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccc
Confidence 369999999999999999999999999999999998776554332211111 1222222221
Q ss_pred ------ccccCCCC-----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 ------LGLVDPTL-----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 ------~~~~d~~l-----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++.. ....+.+..++++|....+..||.+|+|.+|++.
T Consensus 353 ~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~ 405 (415)
T KOG0671|consen 353 SSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALS 405 (415)
T ss_pred cccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhc
Confidence 11222221 1234567788999999999999999999999864
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-09 Score=107.79 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-C--CCCHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-T--EFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~--~~~~~~~ 645 (755)
+-|||||++..--|..++||||+||.-.||.-||+||....+.... -++.... . ..+++-.
T Consensus 193 PFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAI----------------FMIPT~PPPTF~KPE~WS 256 (502)
T KOG0574|consen 193 PFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAI----------------FMIPTKPPPTFKKPEEWS 256 (502)
T ss_pred cccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccccee----------------EeccCCCCCCCCChHhhh
Confidence 4599999999999999999999999999999999999865543211 0111111 1 1234445
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+-+....|+-..|++|-|+.++.+
T Consensus 257 ~~F~DFi~~CLiK~PE~R~TA~~L~~ 282 (502)
T KOG0574|consen 257 SEFNDFIRSCLIKKPEERKTALRLCE 282 (502)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 56778888999999999999877654
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-09 Score=112.18 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=66.8
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|.|||.+++..|. .++||||.||||+.|+||+-|||+.. ...|. ..++.|... + |..-..+
T Consensus 175 PHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN---ir~LL----lKV~~G~f~-M--------Ps~Is~e 238 (786)
T KOG0588|consen 175 PHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN---IRVLL----LKVQRGVFE-M--------PSNISSE 238 (786)
T ss_pred cccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc---HHHHH----HHHHcCccc-C--------CCcCCHH
Confidence 569999999998885 79999999999999999999998432 22222 223344321 1 1111223
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH--HHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA--MLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~--~L~~~~~~~ 680 (755)
+-.|....+..||+.|-||.||.+ .|.+....+
T Consensus 239 aQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~ 273 (786)
T KOG0588|consen 239 AQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLP 273 (786)
T ss_pred HHHHHHHHhccCccccccHHHHhhCchhhcCCCCC
Confidence 334556678899999999999987 566554443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.6e-09 Score=121.50 Aligned_cols=209 Identities=22% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCCEEEccCcc--CCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 004413 23 ELTVLSFGNNN--FSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLR 100 (755)
Q Consensus 23 ~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 100 (755)
+|++|-+..|. +.....+.|..++.|++|||++|.-.+.+|..++.|-+|++|+|+++.+. .+|..+++|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555553 32222223444555555555555444555555555555555555555555 4555555555555555
Q ss_pred ccCCCCCCCCCccccCCCCCCeeecCCCC--CCCCChhhhcCCCCCCEEEeeCccc------------------------
Q 004413 101 FQGNSFQGPIPSSLSKLASLDSLRISDIY--NVSSSLDFVMSLKNLTDLSLRNALI------------------------ 154 (755)
Q Consensus 101 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~L~~n~l------------------------ 154 (755)
+..+.-...+|..+..|++|++|.+..-. ........+.++.+|+.+.......
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 55544333334444445555555544321 1111111222333333332222111
Q ss_pred -cCCCCccccCCCCCCEEeCCCCCCCCCCcccccC------CCCCCEEEccCCc-CCCCCCcccCCCCCEEEeecCcCCC
Q 004413 155 -TGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN------IGSLNYLFLGNNS-LSGTLPTQKSENLQNIDLSYNHLSG 226 (755)
Q Consensus 155 -~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~-l~~~~p~~~~~~L~~L~Ls~N~l~g 226 (755)
....+..+..+.+|+.|.+.++.+.......... ++++..+...++. .....+..+.++|+.|.+..+..-.
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 0123445566777777877777775322222111 1122222222221 1112222355899999999877765
Q ss_pred CCcccc
Q 004413 227 PFPSWV 232 (755)
Q Consensus 227 ~ip~~~ 232 (755)
.+.+..
T Consensus 785 ~~i~~~ 790 (889)
T KOG4658|consen 785 DIIPKL 790 (889)
T ss_pred cCCCHH
Confidence 554443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-09 Score=107.29 Aligned_cols=80 Identities=31% Similarity=0.341 Sum_probs=32.3
Q ss_pred CCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeec
Q 004413 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 221 (755)
Q Consensus 142 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~ 221 (755)
+.++.|+++.|.+... +.+..+++|+.||||+|.++ .+..+-..+.+++.|.|+.|.|...-....+-+|..||+++
T Consensus 307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence 4444444444444311 11334444444444444444 23333334444444444444443222222223444444444
Q ss_pred CcC
Q 004413 222 NHL 224 (755)
Q Consensus 222 N~l 224 (755)
|+|
T Consensus 384 N~I 386 (490)
T KOG1259|consen 384 NQI 386 (490)
T ss_pred cch
Confidence 444
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-09 Score=106.69 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=39.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
+-|||||.+....|....|-|||||+|+||+.|+.|++....
T Consensus 514 PdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE 555 (683)
T KOG0696|consen 514 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE 555 (683)
T ss_pred CcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCH
Confidence 579999999999999999999999999999999999987543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-10 Score=121.63 Aligned_cols=173 Identities=27% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCee
Q 004413 44 NLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSL 123 (755)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 123 (755)
.+..++.+.+..|.+.. +-..+..+.+|..|++.+|++. .+...+..+++|++|+|++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34444555555555532 1122444555555555555555 2222244455555555555555522 124444455555
Q ss_pred ecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC-ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcC
Q 004413 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202 (755)
Q Consensus 124 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 202 (755)
++.+|.+.... .+..+..|+.+++++|.+...-+ . ...+.+|+.+++..|.+. ....+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccc
Confidence 55555443322 22334555555555555552222 1 344555555555555554 222233333444445555555
Q ss_pred CCCCCcccCCC--CCEEEeecCcCC
Q 004413 203 SGTLPTQKSEN--LQNIDLSYNHLS 225 (755)
Q Consensus 203 ~~~~p~~~~~~--L~~L~Ls~N~l~ 225 (755)
+..-+...... |+.+++++|.+.
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccc
Confidence 53333222222 555555555554
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-09 Score=106.11 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
+...|++||......++.|+||||||++++|+++|+.|++..... ..+.++.. .+.... .........
T Consensus 148 ~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~--~~~~~~~~----~~~~~~------~~~~~~~~~ 215 (244)
T smart00220 148 GTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQL--LELFKKIG----KPKPPF------PPPEWKISP 215 (244)
T ss_pred CCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcH--HHHHHHHh----ccCCCC------ccccccCCH
Confidence 346899999999899999999999999999999999998653221 11222211 111110 000000335
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++.+|++.+|++||++.++++
T Consensus 216 ~~~~~i~~~l~~~p~~Rp~~~~~~~ 240 (244)
T smart00220 216 EAKDLIRKLLVKDPEKRLTAEEALQ 240 (244)
T ss_pred HHHHHHHHHccCCchhccCHHHHhh
Confidence 6888999999999999999999986
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=99.65 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=69.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC----------
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL---------- 637 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l---------- 637 (755)
.-|.|||.+.+ ..|++..|+||+|||+.|++++++-+......+. .+-+-..+ |.-.+.+.|.+
T Consensus 241 LWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQ---l~~If~ll--GtPte~iwpg~~~lp~~k~~~ 315 (419)
T KOG0663|consen 241 LWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQ---LDKIFKLL--GTPSEAIWPGYSELPAVKKMT 315 (419)
T ss_pred eeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHH---HHHHHHHh--CCCccccCCCccccchhhccc
Confidence 46999998875 6799999999999999999999987765433222 22222222 22222222322
Q ss_pred -CCCCHHHH----------HHHHHHHHHhcccCCCCCCCHHHHHHHHhccc-ccCCCCCCCCCCcccc
Q 004413 638 -TEFNDKEA----------LRVIGVALLCTQASPMMRPPMSRVVAMLAGDI-EVGKVISKPSYLTDWD 693 (755)
Q Consensus 638 -~~~~~~~~----------~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~-~~~~~~~~~~~~~~~~ 693 (755)
...+.... ..-+++.-.-+..||.+|-|+.|.++ ..- ...+.|..|..+..|.
T Consensus 316 f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~---h~~F~e~P~p~~P~~~Pt~P 380 (419)
T KOG0663|consen 316 FSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK---HEYFRETPLPIDPSMFPTWP 380 (419)
T ss_pred cCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc---ccccccCCCCCChhhcCCCc
Confidence 11111111 23445555667789999999998764 222 1223344556665553
|
|
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-09 Score=111.38 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=63.0
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhh-------HHHHHHHHHHHhh----------c-Ccc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDME-------KIYLLEWAWNLHE----------N-NQS 629 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~-------~~~l~~~~~~~~~----------~-~~~ 629 (755)
..|+|||++.+. .++.++|||||||+++||+||+.|+....... ...+.+++..+-. + ...
T Consensus 179 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (316)
T cd07842 179 IWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEY 258 (316)
T ss_pred ccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccc
Confidence 569999988764 58999999999999999999999986443221 1111111111000 0 000
Q ss_pred ccccCCC-CCCCC----H-------HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 LGLVDPT-LTEFN----D-------KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 ~~~~d~~-l~~~~----~-------~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.. ...++ . ....++.++..+|++.+|++|||+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~ 312 (316)
T cd07842 259 DTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE 312 (316)
T ss_pred hhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 0000000 00011 0 22346788999999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-08 Score=104.98 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred ccccchhhhhcC----CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC--CCCH
Q 004413 569 HGYLAPEYAMRG----HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT--EFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~~----~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~--~~~~ 642 (755)
+-|++||++.-+ +++.|.||||.||+++..+-||+|+...... +.+. .+..+...-.-.+. ..-.
T Consensus 644 YWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQ--QdIL-------qeNTIlkAtEVqFP~KPvVs 714 (775)
T KOG1151|consen 644 YWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQ--QDIL-------QENTILKATEVQFPPKPVVS 714 (775)
T ss_pred eeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhH--HHHH-------hhhchhcceeccCCCCCccC
Confidence 459999988654 7899999999999999999999998754322 2222 22222221111111 1111
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.++ -..+.+|++..-++|-...+++
T Consensus 715 seA---kaFIRRCLaYRKeDR~DV~qLA 739 (775)
T KOG1151|consen 715 SEA---KAFIRRCLAYRKEDRIDVQQLA 739 (775)
T ss_pred HHH---HHHHHHHHHhhhhhhhhHHHHc
Confidence 233 3456799999999997655543
|
|
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-09 Score=108.06 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=66.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH--HHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK--EAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~--~~~ 646 (755)
..|+|||+......+.++||||||++++|++||+.|++.....+ +..... .+... .+.. ...
T Consensus 165 ~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~------~~~~~~-~~~~~---------~~~~~~~~~ 228 (265)
T cd05579 165 PDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEE------IFQNIL-NGKIE---------WPEDVEVSD 228 (265)
T ss_pred ccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHh-cCCcC---------CCccccCCH
Confidence 57999999999889999999999999999999999987554322 111111 11110 0111 135
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+.++...|++.+|++||++.+|.+.|+.
T Consensus 229 ~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~ 257 (265)
T cd05579 229 EAIDLISKLLVPDPEKRLGAKSIEEIKNH 257 (265)
T ss_pred HHHHHHHHHhcCCHhhcCCCccHHHHhcC
Confidence 67789999999999999999877777753
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-08 Score=99.57 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=61.8
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------cccccC-------C
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------SLGLVD-------P 635 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~d-------~ 635 (755)
-|.|||.+.+ .+|+...|+||-||++.||+-|++-+....+-+... .+-+.+..-. +.++-| |
T Consensus 166 WYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~---~If~~LGTP~~~~WP~~~~lpdY~~~~~~P 242 (318)
T KOG0659|consen 166 WYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLS---KIFRALGTPTPDQWPEMTSLPDYVKIQQFP 242 (318)
T ss_pred eccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHH---HHHHHcCCCCcccCccccccccHHHHhcCC
Confidence 4999998875 689999999999999999999886655433322211 1111111100 001111 0
Q ss_pred --CCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 --TLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 --~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+...-..+....+++....+..+|.+|.+.+|+++
T Consensus 243 ~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~ 280 (318)
T KOG0659|consen 243 KPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALK 280 (318)
T ss_pred CCccccccccccHHHHHHHHhhhccCchhcccHHHHhc
Confidence 001111223345688888999999999999999875
|
|
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-08 Score=108.74 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=64.5
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc---cc------------c
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS---LG------------L 632 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~---~~------------~ 632 (755)
..|+|||++.+. .++.++|||||||+++||+||+.|+......+ ....+......... .+ .
T Consensus 197 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (335)
T PTZ00024 197 LWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEID---QLGRIFELLGTPNEDNWPQAKKLPLYTEFTPR 273 (335)
T ss_pred cCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCchhhCcchhhcccccccCcC
Confidence 579999998764 47999999999999999999999987544322 22222222211100 00 0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+............+.++...|++.+|++||++.||+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~ 312 (335)
T PTZ00024 274 KPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK 312 (335)
T ss_pred CcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence 000110111122345778999999999999999999985
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-08 Score=108.20 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=63.4
Q ss_pred ccccchhhhhcCC-CC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH-H
Q 004413 569 HGYLAPEYAMRGH-LT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE-A 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~ 645 (755)
+.|+|||++.+.. |+ .++||||+||+|+-|++|+-|++...... + ...+..+... ++.-. .
T Consensus 185 p~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~---l----~~ki~~~~~~---------~p~~~~S 248 (370)
T KOG0583|consen 185 PAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPN---L----YRKIRKGEFK---------IPSYLLS 248 (370)
T ss_pred cccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHH---H----HHHHhcCCcc---------CCCCcCC
Confidence 6799999999866 76 89999999999999999999998633211 1 1112222211 11111 4
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
..+..+...|++.+|.+|+++.+|.
T Consensus 249 ~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 249 PEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred HHHHHHHHHHcCCCcccCCCHHHHh
Confidence 4677788999999999999999998
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-08 Score=107.63 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=62.0
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHH--------HhhcCcccccc-CCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN--------LHENNQSLGLV-DPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~-d~~l~ 638 (755)
..|+|||++.. ..++.|+|||||||+++||++|+.|+......+.......... .........+. +....
T Consensus 182 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (342)
T cd07854 182 KWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEP 261 (342)
T ss_pred ccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhccccc
Confidence 46999998754 5688999999999999999999999875543222111000000 00000000000 00000
Q ss_pred CCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+. .....+.+++..|++.+|++||++.||+.
T Consensus 262 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~ 299 (342)
T cd07854 262 RRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM 299 (342)
T ss_pred CCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence 0011 11245678999999999999999999974
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-08 Score=78.45 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=33.9
Q ss_pred CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
++|++|+|++|+++...+..|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666654444455556666666666666554444555555555555555554
|
... |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-08 Score=115.18 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=60.1
Q ss_pred cccchhhhhcC---CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 570 GYLAPEYAMRG---HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 570 gy~aPE~~~~~---~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
-|+|||.+.+. +|+.|+|+||.||||+||+-- +.. .++.... ...+++|.+..- .++..+++.
T Consensus 780 lYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~T--sMERa~i----L~~LR~g~iP~~-----~~f~~~~~~ 845 (1351)
T KOG1035|consen 780 LYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGT--SMERASI----LTNLRKGSIPEP-----ADFFDPEHP 845 (1351)
T ss_pred eeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCc--hHHHHHH----HHhcccCCCCCC-----cccccccch
Confidence 39999998754 599999999999999999753 332 2333222 223344544322 122334444
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.-.++..+.++.||.+|||+.|++.
T Consensus 846 ~e~slI~~Ll~hdP~kRPtA~eLL~ 870 (1351)
T KOG1035|consen 846 EEASLIRWLLSHDPSKRPTATELLN 870 (1351)
T ss_pred HHHHHHHHHhcCCCccCCCHHHHhh
Confidence 5567888889999999999999864
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-08 Score=105.14 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=71.2
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|-|||.+.+-.|. ...||||+||+|+-|++|+.||+...+.+. +..++|-+. ..|..-..+
T Consensus 182 LAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSET---------------LTmImDCKY-tvPshvS~e 245 (864)
T KOG4717|consen 182 LAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSET---------------LTMIMDCKY-TVPSHVSKE 245 (864)
T ss_pred hhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhh---------------hhhhhcccc-cCchhhhHH
Confidence 469999999988776 678999999999999999999987654432 334555544 234445566
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH--HHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA--MLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~--~L~~~ 676 (755)
+..|+...+..+|.+|.+.+|++. +|+..
T Consensus 246 CrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~ 276 (864)
T KOG4717|consen 246 CRDLIQSMLVRDPKKRASLEEIVSTSWLQAG 276 (864)
T ss_pred HHHHHHHHHhcCchhhccHHHHhccccccCC
Confidence 777888899999999999999984 66653
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-08 Score=105.54 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=78.0
Q ss_pred hcCCCCCCcccCCC-CcceeeceeeeeeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHH
Q 004413 540 TQDFDPSNKLGEGG-YGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLE 618 (755)
Q Consensus 540 t~~f~~~~~lg~g~-fg~Vy~g~~~~i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~ 618 (755)
.+||..+++++.-- +..-+- +++-||.||.+.+..|..|+|+||+|++++||++-|+++..... ..++
T Consensus 147 LgDfGlaK~l~~~~~~a~tvv-------GTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m---~~Li- 215 (426)
T KOG0589|consen 147 LGDFGLAKILNPEDSLASTVV-------GTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM---SELI- 215 (426)
T ss_pred ecchhhhhhcCCchhhhheec-------CCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch---HHHH-
Confidence 34555555555432 444443 44789999999999999999999999999999999999875432 1222
Q ss_pred HHHHHhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 619 WAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 619 ~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
.+..+ ..++| .+......+..++..|++.+|+.||+..+++.+
T Consensus 216 --~ki~~-----~~~~P----lp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 216 --LKINR-----GLYSP----LPSMYSSELRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred --HHHhh-----ccCCC----CCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence 22221 11222 233344567778889999999999999999864
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-08 Score=95.81 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.7
Q ss_pred eeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 565 LSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 565 i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
+|+++-|+|||.++...+...+|-|+|||+++||+.|..|+.....
T Consensus 201 lCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~ 246 (355)
T KOG0616|consen 201 LCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP 246 (355)
T ss_pred ecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh
Confidence 3333779999999999999999999999999999999999986654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.9e-08 Score=76.87 Aligned_cols=61 Identities=28% Similarity=0.370 Sum_probs=43.0
Q ss_pred ccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCC
Q 004413 46 AKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSF 106 (755)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 106 (755)
++|++|++++|++....+..|..+++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4577777777777655556777777777777777777755556677777777777777754
|
... |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-08 Score=96.03 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=70.7
Q ss_pred ccccchhhhhcCCC---CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGHL---TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~---t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
+.||+||.++..+- -..+|.|||.|+||||.|+..|+....+.+...-+ .-+| +.+ ..|+...
T Consensus 350 pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmki------aleg-----lrv---~ippgis 415 (448)
T KOG0195|consen 350 PAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKI------ALEG-----LRV---HIPPGIS 415 (448)
T ss_pred cccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhh------hhcc-----ccc---cCCCCcc
Confidence 57999999886543 36789999999999999999999876665532111 1111 111 2344555
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
..+.+++.-|..+||.+||.+..|+-.||+.
T Consensus 416 ~hm~klm~icmnedpgkrpkfdmivpilekm 446 (448)
T KOG0195|consen 416 RHMNKLMNICMNEDPGKRPKFDMIVPILEKM 446 (448)
T ss_pred HHHHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence 6788999999999999999999999999864
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-07 Score=93.47 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=60.6
Q ss_pred cccchhhhh-cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhcCccccccC--CCCC
Q 004413 570 GYLAPEYAM-RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHENNQSLGLVD--PTLT 638 (755)
Q Consensus 570 gy~aPE~~~-~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~d--~~l~ 638 (755)
-|-|||.+. ...||...||||.||++.||++||.-+.+...-+...+..-+ ...+........+- |...
T Consensus 192 WYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p 271 (359)
T KOG0660|consen 192 WYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIP 271 (359)
T ss_pred eecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCC
Confidence 488999775 478999999999999999999999877654432222221111 01111111100000 1111
Q ss_pred CCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+. ..-...+++....+..||.+|+|..|.++
T Consensus 272 ~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~ 309 (359)
T KOG0660|consen 272 KQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALA 309 (359)
T ss_pred CCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhc
Confidence 1111 11124556777789999999999999874
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-08 Score=94.01 Aligned_cols=211 Identities=22% Similarity=0.225 Sum_probs=152.4
Q ss_pred hcCCCCCCEEEccCccCCCCCc----ccccCCccCcEEEccccCCC---CCCc-------hhhhcCCCCCEEEccCCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLP----PEIGNLAKLEQLYLNSWGAG---GEIP-------STYAKLRNMQTLWASDAPFT 83 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~l~ 83 (755)
+.-+..+..++||+|.|...-. ..+.+-.+|+..+++.--.. ..++ ..+.+|+.|+..+||+|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4457889999999999874433 33555678888888753221 2233 34568899999999999998
Q ss_pred CCcch----hhcCCCCCcEEEccCCCCCCC----CCccc---------cCCCCCCeeecCCCCCCCCChh----hhcCCC
Q 004413 84 GKIPD----FIGNWTKLKSLRFQGNSFQGP----IPSSL---------SKLASLDSLRISDIYNVSSSLD----FVMSLK 142 (755)
Q Consensus 84 ~~~p~----~~~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~l~~n~~~~~~~~----~l~~l~ 142 (755)
...|. .++.-+.|.+|.|++|.+... +...+ .+-+.|++.....|.+...... .+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 66654 456678999999999988622 22122 2348899999999998877654 445557
Q ss_pred CCCEEEeeCccccCCC-----CccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCCc-----
Q 004413 143 NLTDLSLRNALITGSI-----PSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPT----- 208 (755)
Q Consensus 143 ~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----- 208 (755)
+|+.+.+..|.|...- -..+..+.+|+.|||.+|.++.. +...++.++.|+.|.+..|-++..-..
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 8999999999887331 12345679999999999999853 334567888899999999999854332
Q ss_pred ---ccCCCCCEEEeecCcCCCCC
Q 004413 209 ---QKSENLQNIDLSYNHLSGPF 228 (755)
Q Consensus 209 ---~~~~~L~~L~Ls~N~l~g~i 228 (755)
...++|..|-..+|.+.+.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred hhhhcCCCccccccchhhhcCce
Confidence 23378899989998887543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-07 Score=111.28 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=145.8
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC--CCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG--AGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTK 95 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 95 (755)
..+....+...+-+|.+. .++.... +++|+.|-+..|. +.......|..++.|+.|||++|.-.+.+|..+++|-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344568888999999886 4554443 4589999999886 44444456889999999999998877799999999999
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcccc--CCCCccccCCCCCCEEeC
Q 004413 96 LKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALIT--GSIPSGIGELQNLQTLDL 173 (755)
Q Consensus 96 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L 173 (755)
|++|+|+++.+. .+|..+.+|..|.+|++..+......+.....|.+|++|.+...... ...-..+..+.+|+.|..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999 89999999999999999987766666666677999999999766522 222334455666666665
Q ss_pred CCCCCCCCCcccccCCCCCC----EEEccCCcCCC-CCCcccCCCCCEEEeecCcCCCCCccc
Q 004413 174 SFNNLTGQIPRTLFNIGSLN----YLFLGNNSLSG-TLPTQKSENLQNIDLSYNHLSGPFPSW 231 (755)
Q Consensus 174 s~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~-~~p~~~~~~L~~L~Ls~N~l~g~ip~~ 231 (755)
..... .+-..+..+..|. .+.+..+.... ......+.+|+.|.+.++.++...-.+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc
Confidence 43332 1112223333332 33333333222 222234589999999999987544333
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-08 Score=99.25 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=57.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||+...+.++.++||||+||+++|++||+.|++...... .......+ +......+
T Consensus 146 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-----------------~~~~~~~~---~~~~~~~~ 205 (237)
T cd05576 146 NMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-----------------NTHTTLNI---PEWVSEEA 205 (237)
T ss_pred ccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-----------------ccccccCC---cccCCHHH
Confidence 45999999988889999999999999999999998764321100 00000011 11223456
Q ss_pred HHHHHHhcccCCCCCCCHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRV 669 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v 669 (755)
.++..+|++.+|++||++.++
T Consensus 206 ~~li~~~l~~dp~~R~~~~~~ 226 (237)
T cd05576 206 RSLLQQLLQFNPTERLGAGVA 226 (237)
T ss_pred HHHHHHHccCCHHHhcCCCcc
Confidence 778899999999999998544
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.8e-08 Score=95.88 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=38.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
+-|+|||++.+..|....|-|..|||++||++||-|+.....
T Consensus 332 PEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh 373 (516)
T KOG0690|consen 332 PEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH 373 (516)
T ss_pred hhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch
Confidence 569999999999999999999999999999999999986543
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.9e-07 Score=101.19 Aligned_cols=22 Identities=32% Similarity=0.759 Sum_probs=19.1
Q ss_pred HhcCCCCCCcccCCCCcceeec
Q 004413 539 ATQDFDPSNKLGEGGYGPVYKK 560 (755)
Q Consensus 539 at~~f~~~~~lg~g~fg~Vy~g 560 (755)
..++|...++||+|+||.||+|
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG 164 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEG 164 (507)
T ss_pred cccCceEeeEeecCCCeEEEEE
Confidence 4678999999999999999976
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-07 Score=100.19 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=72.5
Q ss_pred cccchhhhhcC-------CCCccceeeeehheeehhhhCCcCCCCCchhh-HHHHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 570 GYLAPEYAMRG-------HLTEKADVFSFGVAALEIISGRANSDNSLDME-KIYLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 570 gy~aPE~~~~~-------~~t~ksDVysfGvvllElltg~~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
-|.|||.++.. ..+.++|||||||++.|+++.+.|++...... ...++.++.. .....+-|.+....
T Consensus 116 lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~~ 190 (484)
T KOG1023|consen 116 LWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKK-----GGSNPFRPSIELLN 190 (484)
T ss_pred hccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHh-----cCCCCcCcchhhhh
Confidence 49999988753 26888999999999999999999998643222 1223333332 12233444442211
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+....+..++..||.++|++||++.+|-..++.....
T Consensus 191 -e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~ 227 (484)
T KOG1023|consen 191 -ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG 227 (484)
T ss_pred -hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence 3333688999999999999999999999888765443
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-07 Score=101.10 Aligned_cols=41 Identities=32% Similarity=0.380 Sum_probs=36.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
.-|+|||.+.. +.|+..+|-|||||+++|.+||..||....
T Consensus 187 ~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~ 228 (732)
T KOG4250|consen 187 EEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFG 228 (732)
T ss_pred hhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCC
Confidence 35999999984 899999999999999999999999987543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.9e-09 Score=113.78 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=10.3
Q ss_pred cccCCccCcEEEccccCCC
Q 004413 41 EIGNLAKLEQLYLNSWGAG 59 (755)
Q Consensus 41 ~~~~l~~L~~L~L~~n~l~ 59 (755)
.|..+.+|++|.|.+|.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred eeccccceeeEEecCcchh
Confidence 4445555555555555553
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-07 Score=87.33 Aligned_cols=70 Identities=29% Similarity=0.415 Sum_probs=55.0
Q ss_pred CHHHHHHHhcCCCCCCcccCCCCcceeeceeeeeecc------------------ccccchhhhhc----CCCCccceee
Q 004413 532 SYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNF------------------HGYLAPEYAMR----GHLTEKADVF 589 (755)
Q Consensus 532 ~~~el~~at~~f~~~~~lg~g~fg~Vy~g~~~~i~df------------------~gy~aPE~~~~----~~~t~ksDVy 589 (755)
..+.|...+.|.+++|+|-. |.| +.+++|| --|||||.... ..|+.|||||
T Consensus 164 L~~kL~vIHRDvKPsNiLIn------~~G-qVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvW 236 (282)
T KOG0984|consen 164 LHSKLSVIHRDVKPSNILIN------YDG-QVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVW 236 (282)
T ss_pred HHHHhhhhhccCCcceEEEc------cCC-cEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhh
Confidence 34567778889999988754 122 4567777 34999998753 3789999999
Q ss_pred eehheeehhhhCCcCCCCC
Q 004413 590 SFGVAALEIISGRANSDNS 608 (755)
Q Consensus 590 sfGvvllElltg~~p~~~~ 608 (755)
|+||.+.||.++|.||+..
T Consensus 237 SLGItmiElA~lr~PY~~w 255 (282)
T KOG0984|consen 237 SLGITMIEMAILRFPYESW 255 (282)
T ss_pred hhhhhhhhhhhcccccccc
Confidence 9999999999999999864
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-07 Score=89.74 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=67.5
Q ss_pred eeccccccchhhhhc------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC
Q 004413 565 LSNFHGYLAPEYAMR------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT 638 (755)
Q Consensus 565 i~df~gy~aPE~~~~------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~ 638 (755)
+|+++||+|||.+.. .-|+...|.|+.||+|+-|+.|..|+..... +. +.+.+.+|+.. .-.|..
T Consensus 182 lCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ-----ml--MLR~ImeGkyq-F~speW- 252 (411)
T KOG0599|consen 182 LCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ-----ML--MLRMIMEGKYQ-FRSPEW- 252 (411)
T ss_pred hcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH-----HH--HHHHHHhcccc-cCCcch-
Confidence 677799999998763 4678899999999999999999999864321 11 22334444422 111211
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+....+-+++.+|++.||.+|-|.+|+++
T Consensus 253 ---adis~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 253 ---ADISATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred ---hhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence 222345667889999999999999999974
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.7e-09 Score=112.64 Aligned_cols=179 Identities=26% Similarity=0.319 Sum_probs=112.5
Q ss_pred chhhcCCCCCCEEEccCccCCCCCcccccCC-ccCcEEEccccCCC----------CCCchhhhcCCCCCEEEccCCCCC
Q 004413 15 PRELGNLKELTVLSFGNNNFSGTLPPEIGNL-AKLEQLYLNSWGAG----------GEIPSTYAKLRNMQTLWASDAPFT 83 (755)
Q Consensus 15 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~~p~~~~~l~~L~~L~L~~n~l~ 83 (755)
|-.|..+..|++|.|.++.+.. ...+..+ ..|+.|.-. |.+. +.+..++. ...|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 4567889999999999999862 1112221 245555332 1111 12222221 234667777788777
Q ss_pred CCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcccc
Q 004413 84 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG 163 (755)
Q Consensus 84 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 163 (755)
.+..++.-++.|+.|+|++|+++.. ..+..|+.|++|||+.|.+....--....+. |+.|+|++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 5556677778888888888888743 2677788888888888776655433333333 77788888877632 2456
Q ss_pred CCCCCCEEeCCCCCCCCCC-cccccCCCCCCEEEccCCcCC
Q 004413 164 ELQNLQTLDLSFNNLTGQI-PRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 164 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
++++|+.||+++|-+.+.- -..+..+..|..|+|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7778888888888776421 123445666777777777775
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-07 Score=95.72 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=59.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccC--CCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVD--PTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~ 646 (755)
.-|+|||++.+.-.+...|-|+|||+|+||+.|+.|+......+- +. .++- ....+.+ +...
T Consensus 299 hEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T--l~-------------NIv~~~l~Fp~~~-~vs~ 362 (459)
T KOG0610|consen 299 HEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET--LR-------------NIVGQPLKFPEEP-EVSS 362 (459)
T ss_pred cccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhh--HH-------------HHhcCCCcCCCCC-cchh
Confidence 359999999999999999999999999999999999987654321 11 1221 2222222 3334
Q ss_pred HHHHHHHHhcccCCCCCCC
Q 004413 647 RVIGVALLCTQASPMMRPP 665 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPs 665 (755)
.+-+|+..-+..||.+|-.
T Consensus 363 ~akDLIr~LLvKdP~kRlg 381 (459)
T KOG0610|consen 363 AAKDLIRKLLVKDPSKRLG 381 (459)
T ss_pred HHHHHHHHHhccChhhhhc
Confidence 5556777778899999987
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.3e-08 Score=94.84 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=56.6
Q ss_pred hcCCCCCCEEEccCccCCCCC-ccccc-CCccCcEEEccccCCCC--CCchhhhcCCCCCEEEccCCCCCCCcchhhcCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTL-PPEIG-NLAKLEQLYLNSWGAGG--EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNW 93 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 93 (755)
+....-++.|.+.++.|...- -..|+ .++.+++|||.+|.|+. ++...+.+|+.|+.|+|+.|.+...|-..-..+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence 333334445555555443211 11122 24566666666666653 333445566666666666666653332211344
Q ss_pred CCCcEEEccCCCCCCCC-CccccCCCCCCeeecCCCC
Q 004413 94 TKLKSLRFQGNSFQGPI-PSSLSKLASLDSLRISDIY 129 (755)
Q Consensus 94 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~ 129 (755)
.+|+.|-|.+..+...- -..+..++.++.|++++|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 56666666666554322 2234455666666666553
|
|
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-06 Score=87.13 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=69.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+-|.|||++...+|..-.|.||.||+++-|++|-.||+...+. -+..=++..++.|... . .+-...|+.+.
T Consensus 227 PyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~---aispgMk~rI~~gqy~-F-----P~pEWs~VSe~ 297 (400)
T KOG0604|consen 227 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL---AISPGMKRRIRTGQYE-F-----PEPEWSCVSEA 297 (400)
T ss_pred ccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCc---cCChhHHhHhhccCcc-C-----CChhHhHHHHH
Confidence 6799999999999999999999999999999999998764431 1111122333333211 1 11123455554
Q ss_pred HH-HHHHhcccCCCCCCCHHHHHH--HHhcccccCC
Q 004413 649 IG-VALLCTQASPMMRPPMSRVVA--MLAGDIEVGK 681 (755)
Q Consensus 649 ~~-l~~~C~~~~p~~RPsm~~v~~--~L~~~~~~~~ 681 (755)
++ ++..-+..+|.+|-|+.+|+. ++.+...++.
T Consensus 298 aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~vp~ 333 (400)
T KOG0604|consen 298 AKDLIRKLLKTEPTERLTIEEVMDHPWINQYEAVPQ 333 (400)
T ss_pred HHHHHHHHhcCCchhheeHHHhhcCchhcccccCCC
Confidence 44 444446899999999999985 5555444433
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-06 Score=90.41 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=63.4
Q ss_pred cccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC----c--cccccCCC--CCCC
Q 004413 570 GYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN----Q--SLGLVDPT--LTEF 640 (755)
Q Consensus 570 gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~----~--~~~~~d~~--l~~~ 640 (755)
-|.|||.+.+. .|+...|+||+|+++.||++++.-+......+ ...-+-+.+... + .....|-. ....
T Consensus 185 WYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~---ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~ 261 (323)
T KOG0594|consen 185 WYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID---QLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKW 261 (323)
T ss_pred eccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH---HHHHHHHHcCCCCccCCCCccccccccccCcCC
Confidence 49999998875 89999999999999999999887776544322 122222222110 1 01111111 1110
Q ss_pred C------HHH---HHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 641 N------DKE---ALRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 641 ~------~~~---~~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
. ... .....++...|++.+|.+|.|...++.+
T Consensus 262 ~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h 302 (323)
T KOG0594|consen 262 PGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH 302 (323)
T ss_pred CCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence 0 011 1357789999999999999999988753
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-08 Score=97.40 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=137.2
Q ss_pred eEEecCCcCcCCCchhhcCCC--CCCEEEccCccCCCC-Cccccc-CCccCcEEEccccCCCCC-CchhhhcCCCCCEEE
Q 004413 2 LLSVAHNVFSGSVPRELGNLK--ELTVLSFGNNNFSGT-LPPEIG-NLAKLEQLYLNSWGAGGE-IPSTYAKLRNMQTLW 76 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~-~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ 76 (755)
.||+.+-.|. |..++.+. ....+.+....+... +.+.+. .-..|++|||++..|+.. +-..+..+++|+.|.
T Consensus 140 ~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lS 216 (419)
T KOG2120|consen 140 TLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLS 216 (419)
T ss_pred eeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcc
Confidence 3555554443 44444443 344445543333211 111111 124588888888776532 233467788888888
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccCC-CCCCCC-CccccCCCCCCeeecCCCCCCCCChhhh-cC-CCCCCEEEeeCc
Q 004413 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGN-SFQGPI-PSSLSKLASLDSLRISDIYNVSSSLDFV-MS-LKNLTDLSLRNA 152 (755)
Q Consensus 77 L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~-l~~L~~L~L~~n 152 (755)
|.++++...+...++.-.+|+.|+|+.+ .++..- ---+..++.|..|+|++|.........+ .. -++|+.|+|+++
T Consensus 217 lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 217 LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 8888888888888888888888888775 344211 1135678888889998887765544322 11 256888888876
Q ss_pred ccc---CCCCccccCCCCCCEEeCCCCC-CCCCCcccccCCCCCCEEEccCCcCCCCCCccc-----CCCCCEEEeecC
Q 004413 153 LIT---GSIPSGIGELQNLQTLDLSFNN-LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK-----SENLQNIDLSYN 222 (755)
Q Consensus 153 ~l~---~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~~L~~L~Ls~N 222 (755)
.-. ..+..-...+++|.+||||+|. ++......|.+++.|++|.++.|.. .+|... .++|.+||+-++
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 321 1222234678999999999975 5545556788999999999988864 455433 278999988654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-07 Score=90.10 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=119.3
Q ss_pred CCCCCCEEEccCccCCC--CCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCC-cchhhcCCCCC
Q 004413 20 NLKELTVLSFGNNNFSG--TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGK-IPDFIGNWTKL 96 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L 96 (755)
.+++++.|||..|.|+. .+..-+.+|+.|+.|+|+.|.+...+-..-..+.+|+.|.|.+..+... .-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46799999999999984 2344466899999999999999766543324678999999999887643 33456778999
Q ss_pred cEEEccCCCCCCC--CCccccCC-CCCCeeecCCCCCCCC--ChhhhcCCCCCCEEEeeCccccCCC-CccccCCCCCCE
Q 004413 97 KSLRFQGNSFQGP--IPSSLSKL-ASLDSLRISDIYNVSS--SLDFVMSLKNLTDLSLRNALITGSI-PSGIGELQNLQT 170 (755)
Q Consensus 97 ~~L~L~~n~l~~~--~p~~l~~l-~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~ 170 (755)
+.|+++.|.+.-. -....... +.+.+|+...|..... ......-++++..+.+..|.+...- ...+..++.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999999854411 11112221 2444444443321110 0011223567777777777665432 223445666777
Q ss_pred EeCCCCCCCC-CCcccccCCCCCCEEEccCCcCCCCC
Q 004413 171 LDLSFNNLTG-QIPRTLFNIGSLNYLFLGNNSLSGTL 206 (755)
Q Consensus 171 L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (755)
|+|+.|++.+ ...+++..++.|..|.+++|.+...+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 8888888764 22346677788888888888776543
|
|
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-06 Score=94.17 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=75.4
Q ss_pred cccCCCCcceeec--eeeeeeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh
Q 004413 548 KLGEGGYGPVYKK--TQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE 625 (755)
Q Consensus 548 ~lg~g~fg~Vy~g--~~~~i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~ 625 (755)
++++.|-+..++. .-..+++.++|+|||......|+.++||||.||+++.|++|..|+......+... .+.
T Consensus 179 k~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~-------~i~ 251 (382)
T KOG0032|consen 179 KLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL-------AIL 251 (382)
T ss_pred EEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH-------HHH
Confidence 3444444444443 1222667789999999999999999999999999999999999998654332211 222
Q ss_pred cCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 626 NNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 626 ~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++. +.-++... .....+-++...++..+|..|++..++++
T Consensus 252 ~~~~-~f~~~~w~----~is~~akd~i~~ll~~dp~~R~ta~~~L~ 292 (382)
T KOG0032|consen 252 RGDF-DFTSEPWD----DISESAKDFIRKLLEFDPRKRLTAAQALQ 292 (382)
T ss_pred cCCC-CCCCCCcc----ccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence 2322 11111111 22334555777889999999999999987
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.9e-07 Score=90.23 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=58.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc-hhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL-DMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|+|||.+++..|....|-|++||+++||+.||.|+|... ....++..++..+.+-+.++. .|..-..+
T Consensus 415 pnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqir---------iprslsvk 485 (593)
T KOG0695|consen 415 PNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIR---------IPRSLSVK 485 (593)
T ss_pred CcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhccc---------ccceeehh
Confidence 67999999999999999999999999999999999997422 112234445555544333221 11222234
Q ss_pred HHHHHHHhcccCCCCCC
Q 004413 648 VIGVALLCTQASPMMRP 664 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP 664 (755)
...+...-+..||.+|-
T Consensus 486 as~vlkgflnkdp~erl 502 (593)
T KOG0695|consen 486 ASHVLKGFLNKDPKERL 502 (593)
T ss_pred hHHHHHHhhcCCcHHhc
Confidence 44555566777887773
|
|
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=98.71 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=64.6
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
+-|||||++. +..|+..+||||+||.-.||--|..|.-++.+... ++. +..---|++ ..+..
T Consensus 187 P~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmra---------LF~---IpRNPPPkL-krp~k 253 (953)
T KOG0587|consen 187 PYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRA---------LFL---IPRNPPPKL-KRPKK 253 (953)
T ss_pred cccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhh---------hcc---CCCCCCccc-cchhh
Confidence 4599999885 35678899999999999999999999876655321 111 000001122 12445
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-.+++.+.+..|+..+-++||+|.+.++
T Consensus 254 Ws~~FndFIs~cL~Kd~e~RP~~~~ll~ 281 (953)
T KOG0587|consen 254 WSKKFNDFISTCLVKDYEQRPSTEELLK 281 (953)
T ss_pred HHHHHHHHHHHHHhhccccCcchhhhcc
Confidence 5677888999999999999999988763
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=92.11 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=61.3
Q ss_pred ccccchhhhhcCC----CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC--CCCCH
Q 004413 569 HGYLAPEYAMRGH----LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL--TEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~~~----~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l--~~~~~ 642 (755)
+.+||||...++. ...+.||||.||.|+=++-|+-||-..... .+. .+++...+ .+. .
T Consensus 279 PAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~---~l~------------~KIvn~pL~fP~~-p 342 (576)
T KOG0585|consen 279 PAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFEL---ELF------------DKIVNDPLEFPEN-P 342 (576)
T ss_pred ccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHH---HHH------------HHHhcCcccCCCc-c
Confidence 5699999988743 357889999999999999999998643211 111 11222222 222 2
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAML 673 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L 673 (755)
+.-.+.-.|.+..++.||++|-+..+|....
T Consensus 343 e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hp 373 (576)
T KOG0585|consen 343 EINEDLKDLIKRLLEKDPEQRITLPDIKLHP 373 (576)
T ss_pred cccHHHHHHHHHHhhcChhheeehhhheecc
Confidence 3344556677888899999999999987543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.7e-08 Score=95.87 Aligned_cols=177 Identities=24% Similarity=0.220 Sum_probs=124.8
Q ss_pred CCCCEEEccCccCCCC-CcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC-CCCC-cchhhcCCCCCcE
Q 004413 22 KELTVLSFGNNNFSGT-LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP-FTGK-IPDFIGNWTKLKS 98 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~ 98 (755)
+.|++|||++..|+.. +-..+..|.+|+.|.|.++++.+.+...+++-.+|+.|+|+.+. ++.. .--.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4688999999888732 33346678899999999999988888888899999999998864 4421 2223677889999
Q ss_pred EEccCCCCCCCCCcc-ccC-CCCCCeeecCCCCCC--CCChh-hhcCCCCCCEEEeeCcc-ccCCCCccccCCCCCCEEe
Q 004413 99 LRFQGNSFQGPIPSS-LSK-LASLDSLRISDIYNV--SSSLD-FVMSLKNLTDLSLRNAL-ITGSIPSGIGELQNLQTLD 172 (755)
Q Consensus 99 L~L~~n~l~~~~p~~-l~~-l~~L~~L~l~~n~~~--~~~~~-~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 172 (755)
|+|+.|.+....-.. +.+ -++|..|+|+++.-. ..... ....+++|..|+|++|. ++...-..|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998776332211 122 257888888875421 11222 34578899999999874 4444445677889999999
Q ss_pred CCCCCCCCCCccc---ccCCCCCCEEEccCC
Q 004413 173 LSFNNLTGQIPRT---LFNIGSLNYLFLGNN 200 (755)
Q Consensus 173 Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N 200 (755)
|+.|.. .+|.. +...++|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 988875 35654 456788999998655
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-06 Score=96.54 Aligned_cols=90 Identities=21% Similarity=0.329 Sum_probs=62.3
Q ss_pred eccccccchhhhhcCCCCccceeeeehheeehhhhC-CcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 566 SNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG-RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 566 ~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
++..||+|||.+...+-+...|+||+|||++-++|| ..|+......+ .++. .|.. .++ .+... .++
T Consensus 675 sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~-~NIl--------~~~~--~L~-~L~~~-~d~ 741 (903)
T KOG1027|consen 675 SGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ-ANIL--------TGNY--TLV-HLEPL-PDC 741 (903)
T ss_pred CCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhh-hhhh--------cCcc--cee-eeccC-chH
Confidence 344799999999999889999999999999999995 88886543221 2221 1110 000 01111 122
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
...+|+-+.++.+|..||++.+|+
T Consensus 742 --eA~dLI~~ml~~dP~~RPsa~~VL 765 (903)
T KOG1027|consen 742 --EAKDLISRMLNPDPQLRPSATDVL 765 (903)
T ss_pred --HHHHHHHHhcCCCcccCCCHHHHh
Confidence 566778888999999999999996
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.3e-07 Score=89.37 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=35.1
Q ss_pred cccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 570 GYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 570 gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
-|||||+.. ...|..++|.||+||||+-|++|-.|+...-+
T Consensus 251 EfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg 296 (463)
T KOG0607|consen 251 EFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCG 296 (463)
T ss_pred hhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccC
Confidence 499999764 35788999999999999999999999976543
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.5e-06 Score=90.62 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=67.3
Q ss_pred CCCCCcccCCCCcceeeceeeeeeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHH
Q 004413 543 FDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN 622 (755)
Q Consensus 543 f~~~~~lg~g~fg~Vy~g~~~~i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~ 622 (755)
|.-.++||.|+- ....|+++-|.|||.+...-.....|.||+||+++||+||++|+....++...++
T Consensus 564 FGFAKki~~g~K-------TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~------ 630 (732)
T KOG0614|consen 564 FGFAKKIGSGRK-------TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNL------ 630 (732)
T ss_pred hhhHHHhccCCc-------eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHH------
Confidence 333455555542 3335666899999999998899999999999999999999999987665432222
Q ss_pred HhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 004413 623 LHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPP 665 (755)
Q Consensus 623 ~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPs 665 (755)
+-+| + +. .++|....+...+++..-+..+|.+|--
T Consensus 631 -ILkG-i-d~-----i~~Pr~I~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 631 -ILKG-I-DK-----IEFPRRITKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred -HHhh-h-hh-----hhcccccchhHHHHHHHHHhcCcHhhhc
Confidence 1111 0 01 1223333445556666666778988854
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-07 Score=82.56 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCCEEEccCccCCCCCccc---ccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 23 ELTVLSFGNNNFSGTLPPE---IGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
.+..++|++|.+- .+++. +.....|...+|++|.+....+..-.+.+.++.|+|++|.++ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3445566666553 33333 233344445566666664322222233445666666666666 456566666666666
Q ss_pred EccCCCCCCCCCccccCCCCCCeeecCCCCCCCCCh
Q 004413 100 RFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL 135 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 135 (755)
+++.|.+. ..|..+..|.+|-.|+..+|.......
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcH
Confidence 66666665 455555555555555555554444433
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.9e-07 Score=102.37 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=35.4
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
+-|++||+++. +.|...+|-||.||++|||+.|..||+.
T Consensus 240 PDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa 283 (1317)
T KOG0612|consen 240 PDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA 283 (1317)
T ss_pred CCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH
Confidence 56999999862 7899999999999999999999999874
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-06 Score=87.39 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=68.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH-----HHhhcCcccc-cc----------
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW-----NLHENNQSLG-LV---------- 633 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~-----~~~~~~~~~~-~~---------- 633 (755)
-|-|||.+.+-.|....|+||.||.||||.||+.-|....+....-+..-+. ++++.|.+.+ -+
T Consensus 600 FYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e 679 (752)
T KOG0670|consen 600 FYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIE 679 (752)
T ss_pred hccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEe
Confidence 4999999999999999999999999999999998887665544333332221 2333333211 11
Q ss_pred ----------------CC------CC---CCCCHHH---HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 ----------------DP------TL---TEFNDKE---ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 ----------------d~------~l---~~~~~~~---~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-| .| ..++.++ +..+..|.-.|+..+|++|-|..+.++
T Consensus 680 ~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~ 745 (752)
T KOG0670|consen 680 VDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALK 745 (752)
T ss_pred ccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhc
Confidence 12 01 1133343 445666888899999999999887753
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-06 Score=85.55 Aligned_cols=203 Identities=16% Similarity=0.164 Sum_probs=146.0
Q ss_pred eEEecCCcCcCCCc----hhhcCCCCCCEEEccCccCC---CCCc-------ccccCCccCcEEEccccCCCCCCchh--
Q 004413 2 LLSVAHNVFSGSVP----RELGNLKELTVLSFGNNNFS---GTLP-------PEIGNLAKLEQLYLNSWGAGGEIPST-- 65 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~l~~~~p~~-- 65 (755)
.++||+|-|...-. ..|.+-.+|+..+++.-... ..++ ..+.+|++|+..+|+.|-+....|..
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 58999999985544 34556788999988875432 1222 35678999999999999998776654
Q ss_pred --hhcCCCCCEEEccCCCCCC----Ccchh---------hcCCCCCcEEEccCCCCCCCCCcc-----ccCCCCCCeeec
Q 004413 66 --YAKLRNMQTLWASDAPFTG----KIPDF---------IGNWTKLKSLRFQGNSFQGPIPSS-----LSKLASLDSLRI 125 (755)
Q Consensus 66 --~~~l~~L~~L~L~~n~l~~----~~p~~---------~~~l~~L~~L~L~~n~l~~~~p~~-----l~~l~~L~~L~l 125 (755)
+++-..|.+|.|++|.+.- .+... ..+-+.|+......|++. ..+.. |..-.+|+.+.+
T Consensus 114 d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEe
Confidence 5667899999999998752 22211 234578999999999987 33332 233358999999
Q ss_pred CCCCCCCCChh-----hhcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCCCccccc------CCC
Q 004413 126 SDIYNVSSSLD-----FVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQIPRTLF------NIG 190 (755)
Q Consensus 126 ~~n~~~~~~~~-----~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~ 190 (755)
..|.+...... .+..+++|+.|+|.+|.++.. +...+..++.|+.|.+.+|-++..-..++. ..+
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p 272 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVP 272 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCC
Confidence 99887765443 345678999999999998743 344566778899999999988754433321 467
Q ss_pred CCCEEEccCCcCCCC
Q 004413 191 SLNYLFLGNNSLSGT 205 (755)
Q Consensus 191 ~L~~L~Ls~N~l~~~ 205 (755)
+|+.|-+.+|.+.+.
T Consensus 273 ~l~~L~~~Yne~~~~ 287 (388)
T COG5238 273 NLMPLPGDYNERRGG 287 (388)
T ss_pred CccccccchhhhcCc
Confidence 889999999987753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=84.80 Aligned_cols=75 Identities=15% Similarity=0.340 Sum_probs=40.2
Q ss_pred cCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 004413 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 98 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 98 (755)
..+.+++.|++++|.++ .+|. + -.+|++|.+++|.-...+|..+. .+|++|++++|.....+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 34567777777777665 4451 1 23577777766444345554442 4666666666622223332 3555
Q ss_pred EEccCCC
Q 004413 99 LRFQGNS 105 (755)
Q Consensus 99 L~L~~n~ 105 (755)
|++..+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 5555443
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-06 Score=87.16 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=62.6
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+-|..||...+..|. ...|-||+||+|+-|+-|..|||.... ..++. .+..|...+ | +.+..
T Consensus 216 PLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh---k~lvr----QIs~GaYrE---P-------~~PSd 278 (668)
T KOG0611|consen 216 PLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH---KRLVR----QISRGAYRE---P-------ETPSD 278 (668)
T ss_pred cccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH---HHHHH----HhhcccccC---C-------CCCch
Confidence 459999999888775 789999999999999999999997543 22332 223333221 1 12233
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..-|+.|.+..+|++|-|+.+|+.
T Consensus 279 A~gLIRwmLmVNP~RRATieDiAs 302 (668)
T KOG0611|consen 279 ASGLIRWMLMVNPERRATIEDIAS 302 (668)
T ss_pred HHHHHHHHHhcCcccchhHHHHhh
Confidence 455777888899999999999975
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=79.28 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=59.9
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCH
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~ 642 (755)
.-|-|||.... -++..-+|||.|||+++-++||+.|++.... ++-.-|-|..|..+....+ |+. ..+.+
T Consensus 184 ~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~---~d~~Y~~~~~w~~rk~~~~--P~~F~~fs~ 258 (378)
T KOG1345|consen 184 NNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASI---MDKPYWEWEQWLKRKNPAL--PKKFNPFSE 258 (378)
T ss_pred cccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhc---cCchHHHHHHHhcccCccC--chhhcccCH
Confidence 35889997753 2456779999999999999999999874322 2233445555555443321 111 22222
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+..++-..-+..++++|=...++.++-.
T Consensus 259 ----~a~r~Fkk~lt~~~~drcki~~~kk~rk 286 (378)
T KOG1345|consen 259 ----KALRLFKKSLTPRFKDRCKIWTAKKMRK 286 (378)
T ss_pred ----HHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 2333334557888999866666665543
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.1e-06 Score=86.57 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=71.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchh----hHHHHH---HHH----HHHhhcCcc-ccccCC-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDM----EKIYLL---EWA----WNLHENNQS-LGLVDP- 635 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~----~~~~l~---~~~----~~~~~~~~~-~~~~d~- 635 (755)
.-|.|||++.+..|++-+|+|||+|+.+||+||---|+...+. ++..++ +.. +.+...|+. .+.++.
T Consensus 415 RQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~ 494 (590)
T KOG1290|consen 415 RQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRR 494 (590)
T ss_pred hhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccc
Confidence 4599999999999999999999999999999998776643321 122222 211 122222221 122221
Q ss_pred -------CC------------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 -------TL------------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 -------~l------------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+| -+++.+++.++.....-.++.+|++|||+.+.++
T Consensus 495 G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~ 549 (590)
T KOG1290|consen 495 GELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLK 549 (590)
T ss_pred cceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhc
Confidence 11 1457788999999999999999999999998874
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-07 Score=80.62 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=47.3
Q ss_pred ecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 124 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
+|++|.+......+-..++.++.|+|.+|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+..+|.+.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 33333333333333344455666666677766 56666777777777777777776 55666666667777776666665
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.4e-06 Score=87.30 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=37.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
+.|+|||+++..-|...-|+||.||+++--++|.-|+...
T Consensus 730 PAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd 769 (888)
T KOG4236|consen 730 PAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED 769 (888)
T ss_pred ccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence 6799999999999999999999999999999999998753
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=77.33 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=60.6
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHh--------hcCccccccC-CCCCC
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLH--------ENNQSLGLVD-PTLTE 639 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~d-~~l~~ 639 (755)
-|.+||.+.+ ..++.+.|||.-|||+.||.||.+-+..........+..-....+ .+=.+.+.+. +.+.+
T Consensus 193 wYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~ 272 (376)
T KOG0669|consen 193 WYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPK 272 (376)
T ss_pred ecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCc
Confidence 4999998765 689999999999999999999998877554433333322211100 0000001110 00100
Q ss_pred ----CCHHHHH------HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 ----FNDKEAL------RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 ----~~~~~~~------~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.-.+.++ ..+++.-.-+..||.+|++..+++.
T Consensus 273 ~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln 314 (376)
T KOG0669|consen 273 GQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN 314 (376)
T ss_pred chhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence 0011111 3455666678899999999998864
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.3e-05 Score=86.18 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=58.9
Q ss_pred ccccchhhh---hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCC-CCCCCCHHH
Q 004413 569 HGYLAPEYA---MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDP-TLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~---~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~-~l~~~~~~~ 644 (755)
+.|||||+. +.+.|.+++|||+.|+.-.|+---+.|.....+.....+ .. ..-.+| ++.+ ...-
T Consensus 176 pywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~L-------mT----kS~~qpp~lkD-k~kw 243 (829)
T KOG0576|consen 176 PYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFL-------MT----KSGFQPPTLKD-KTKW 243 (829)
T ss_pred ccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHH-------hh----ccCCCCCcccC-Cccc
Confidence 469999987 468899999999999999999887888654444322111 11 112232 2321 1122
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
...+-+++..|+-.+|.+||+....+
T Consensus 244 s~~fh~fvK~altknpKkRptaeklL 269 (829)
T KOG0576|consen 244 SEFFHNFVKGALTKNPKKRPTAEKLL 269 (829)
T ss_pred hHHHHHHHHHHhcCCCccCCChhhhe
Confidence 33455677778999999999987653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=77.88 Aligned_cols=33 Identities=36% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCCEEEccCCcCCCCCCcccCCCCCEEEeecCc
Q 004413 190 GSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH 223 (755)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~ 223 (755)
++|+.|++++|... ..|.....+|+.|+++.|.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCcccccccCcEEEecccc
Confidence 46777777776655 3444455677777777663
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.5e-05 Score=78.42 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=36.1
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhh
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDME 612 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~ 612 (755)
-|.|||.+++ ..|+...||||.|+++-||+.+|--+....+-+
T Consensus 222 YYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~Piq 265 (449)
T KOG0664|consen 222 YYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIE 265 (449)
T ss_pred HhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHH
Confidence 5999999987 679999999999999999998887776544433
|
|
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.6e-05 Score=86.95 Aligned_cols=61 Identities=28% Similarity=0.508 Sum_probs=51.5
Q ss_pred CcccCCCCcceeeceeeeeecccc---ccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCC
Q 004413 547 NKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 547 ~~lg~g~fg~Vy~g~~~~i~df~g---y~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
-+|+++||+.+|. ..-++..|.| |.|||.+++.++ ..++|+||.||||+-|++|.-|+|..
T Consensus 194 ikIaDfgfS~~~~-~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~ 258 (596)
T KOG0586|consen 194 IKIADFGFSTFFD-YGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ 258 (596)
T ss_pred eeeeccccceeec-ccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence 4799999999997 3456666654 999999988665 58999999999999999999999853
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=97.73 E-value=1.3e-05 Score=78.97 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=51.0
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|++||..... ..+.+.|+|++|++++|+ ..
T Consensus 157 ~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------------------------------------------~~ 189 (215)
T cd00180 157 PAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------------------------------------------PE 189 (215)
T ss_pred CCccChhHhcccCCCCchhhhHHHHHHHHHH-----------------------------------------------HH
Confidence 679999999887 889999999999999999 25
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
+.++...|++.+|++||++.++++.
T Consensus 190 ~~~~l~~~l~~~p~~R~~~~~l~~~ 214 (215)
T cd00180 190 LKDLIRKMLQKDPEKRPSAKEILEH 214 (215)
T ss_pred HHHHHHHHhhCCcccCcCHHHHhhC
Confidence 6678889999999999999999864
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.8e-05 Score=86.24 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=39.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME 612 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~ 612 (755)
..|||||++...-++.-+|-||-||||+||+-|+.|+....+.+
T Consensus 835 ~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~ 878 (1034)
T KOG0608|consen 835 PNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGE 878 (1034)
T ss_pred CcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCc
Confidence 35999999999999999999999999999999999997665544
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.1e-05 Score=78.45 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=35.2
Q ss_pred ccccchhhhh-cCCCCccceeeeehheeehhhhCCcCCCCC
Q 004413 569 HGYLAPEYAM-RGHLTEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 569 ~gy~aPE~~~-~~~~t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
.||-|||++. .+.-|++.||||-||+++-+++++.|+...
T Consensus 241 ~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a 281 (418)
T KOG1167|consen 241 PGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKA 281 (418)
T ss_pred CCCCchHHHhhccCcCCccceeeccceeehhhccccccccC
Confidence 7999999875 567789999999999999999999997543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.4e-05 Score=54.33 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=20.5
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCC
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAG 59 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 59 (755)
+|++|+|++|+|+ .+|..|++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666665 44545666666666666666554
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=69.95 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCEEEccCccCCCCCcccccC-CccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 24 LTVLSFGNNNFSGTLPPEIGN-LAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
=+.++|.+.++. .+- .++. +.+...+||++|++... ..|..++.|.+|.|++|.|+..-|.--.-+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 344555555543 111 1221 23555666666665321 234555666666666666654333333334556666666
Q ss_pred CCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC---CccccCCCCCCEEeCCCCCC
Q 004413 103 GNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI---PSGIGELQNLQTLDLSFNNL 178 (755)
Q Consensus 103 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l 178 (755)
+|.|.. + + ...-+..++.|++|.+-+|.++..- -..+..+++|+.||+..-..
T Consensus 97 nNsi~~-l----~------------------dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQE-L----G------------------DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred Ccchhh-h----h------------------hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 555541 1 0 1122344555666666666554321 12355678888888765443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=69.56 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=84.1
Q ss_pred EEecCCcCcCCCchhhcC-CCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 3 LSVAHNVFSGSVPRELGN-LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 3 L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
++|.+.++.. ...++. +.+...+||++|.+. .+ +.|..++.|.+|.|++|+|+..-|..-..+++|+.|.|.+|+
T Consensus 24 ~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 24 LDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccc--hhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4555555441 112333 347888999999986 33 347789999999999999998888766778999999999999
Q ss_pred CCCC-cchhhcCCCCCcEEEccCCCCCCCC---CccccCCCCCCeeecCC
Q 004413 82 FTGK-IPDFIGNWTKLKSLRFQGNSFQGPI---PSSLSKLASLDSLRISD 127 (755)
Q Consensus 82 l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~l~~ 127 (755)
+... --+-+..+++|++|.+-+|.++..- --.+..+++|+.||...
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8731 1133667889999999888877211 11345566666666543
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.2e-05 Score=75.68 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=33.0
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSD 606 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~ 606 (755)
+-|.|||.+.+ ..||...|||+.||++.||+|-++-+.
T Consensus 203 iWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~ 241 (438)
T KOG0666|consen 203 IWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFK 241 (438)
T ss_pred EEecChHHhcccccccchhhhHHHHHHHHHHHccCcccc
Confidence 46999998876 578999999999999999999776654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=52.23 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=17.3
Q ss_pred CCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 71 NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 71 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 34444555555555555555544
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00014 Score=84.47 Aligned_cols=133 Identities=25% Similarity=0.279 Sum_probs=83.0
Q ss_pred CCCcEEEccCCCCC-CCCCcccc-CCCCCCeeecCCCCCCCCC-hhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCE
Q 004413 94 TKLKSLRFQGNSFQ-GPIPSSLS-KLASLDSLRISDIYNVSSS-LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 170 (755)
Q Consensus 94 ~~L~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 170 (755)
.+|++|++++...- ...|..++ .+|+|++|.+.+-.+.... ...+.++++|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777664332 22233333 3677777777654333222 23456777888888888877743 56777888888
Q ss_pred EeCCCCCCCC-CCcccccCCCCCCEEEccCCcCCCCC--C------cccCCCCCEEEeecCcCCCCC
Q 004413 171 LDLSFNNLTG-QIPRTLFNIGSLNYLFLGNNSLSGTL--P------TQKSENLQNIDLSYNHLSGPF 228 (755)
Q Consensus 171 L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p------~~~~~~L~~L~Ls~N~l~g~i 228 (755)
|.+.+=.+.. ..-..+..+++|+.||+|........ . ...+++|+.||.|++.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8777766653 33345677888888888877655322 1 123478888988887777544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00018 Score=83.51 Aligned_cols=135 Identities=24% Similarity=0.272 Sum_probs=70.4
Q ss_pred CCCCEEEccCCCC-CCCcchhhc-CCCCCcEEEccCCCCCC-CCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCE
Q 004413 70 RNMQTLWASDAPF-TGKIPDFIG-NWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTD 146 (755)
Q Consensus 70 ~~L~~L~L~~n~l-~~~~p~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 146 (755)
.+|++|++++... ....|..++ .||+|+.|.+.+-.+.. .+-....++++|..||+++.++... ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666655432 222333333 25666666665544431 1222334556666666666554433 44556666666
Q ss_pred EEeeCccccC-CCCccccCCCCCCEEeCCCCCCCCCC--c----ccccCCCCCCEEEccCCcCCCCC
Q 004413 147 LSLRNALITG-SIPSGIGELQNLQTLDLSFNNLTGQI--P----RTLFNIGSLNYLFLGNNSLSGTL 206 (755)
Q Consensus 147 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~--p----~~l~~l~~L~~L~Ls~N~l~~~~ 206 (755)
|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.|++.+...+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6665554442 11224556777777777776655321 1 11224677778887777666543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00031 Score=69.60 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=44.6
Q ss_pred CcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC--CCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 38 LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA--PFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 38 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+..-.-.+..|+.|.+.+..++.. ..|..|++|++|.++.| ++.+.++-..-.+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444444556677777766666533 24556778888888888 555555555555688888888888776
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00019 Score=77.67 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=53.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~ 646 (755)
.-||+||-+.+.+|++|+|+||+|++|.|+++ -..+++... ...-+++|. ++|.. .+++.
T Consensus 426 ~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~----------t~~d~r~g~----ip~~~~~d~p~---- 487 (516)
T KOG1033|consen 426 LLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIA----------TLTDIRDGI----IPPEFLQDYPE---- 487 (516)
T ss_pred cccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHH----------hhhhhhcCC----CChHHhhcCcH----
Confidence 67999999999999999999999999999998 333322110 111122232 22222 22332
Q ss_pred HHHHHHHHhcccCCCCCCCHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRV 669 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v 669 (755)
-+.+..+-+.+.|.+||+..++
T Consensus 488 -e~~ll~~lls~~p~~RP~~~~~ 509 (516)
T KOG1033|consen 488 -EYTLLQQLLSPSPEERPSAIEV 509 (516)
T ss_pred -HHHHHHHhcCCCcccCchHHHH
Confidence 2345667789999999955544
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00038 Score=69.54 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=35.6
Q ss_pred ccccchhhh-hcCCCCccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYA-MRGHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~-~~~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
..|++||.. ....++.++|||+||++++||++|+.|++.
T Consensus 163 ~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~ 202 (225)
T smart00221 163 PFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG 202 (225)
T ss_pred CCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence 579999998 777888899999999999999999999965
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0023 Score=58.07 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=47.5
Q ss_pred hhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 17 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
.|.++++|+.+.+.. .+.......|.++.+|+.+.+.++ +.......|.++.+|+.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456667777777764 344344455666767777777653 4433334566666677777654 3332223445556666
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 97 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
+.+.+..+ +...-...|.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 66666544 332223344444 55555554
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00051 Score=63.67 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=30.8
Q ss_pred cccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCC
Q 004413 570 GYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 570 gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
-|.+|.++.+. -|++..|.||-|+++.|+....+|...
T Consensus 166 wyrppdvlfgakly~tsidmwsagcifaelanagrplfp 204 (292)
T KOG0662|consen 166 WYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 204 (292)
T ss_pred eccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCC
Confidence 48888887764 578899999999999999986666543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00052 Score=68.01 Aligned_cols=92 Identities=23% Similarity=0.211 Sum_probs=67.6
Q ss_pred CchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEcccc--CCCCCCchhhhcCCCCCEEEccCCCCCC-Ccchhh
Q 004413 14 VPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSW--GAGGEIPSTYAKLRNMQTLWASDAPFTG-KIPDFI 90 (755)
Q Consensus 14 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~ 90 (755)
+..-.-.+..|+.|++.+..++. + ..|-.|++|+.|.++.| ++.+.++.....+++|++|++++|++.. .--.-+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44445567788888888888762 2 23557899999999999 7777676666778999999999999872 111224
Q ss_pred cCCCCCcEEEccCCCCC
Q 004413 91 GNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 91 ~~l~~L~~L~L~~n~l~ 107 (755)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 55677888888887665
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=56.54 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=24.6
Q ss_pred cccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 41 EIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 41 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
.|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +...-...|.++.+|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 355555666666553 333333344555555666655543 3322223445554555555543
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.003 Score=64.30 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=66.8
Q ss_pred eeeeeecc---ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh----------------HHHHHHHHH
Q 004413 561 TQLMLSNF---HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME----------------KIYLLEWAW 621 (755)
Q Consensus 561 ~~~~i~df---~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~----------------~~~l~~~~~ 621 (755)
..|+.+|+ .-|-|||...+..+.++.||||.||++-||++|+--+.+...-+ ...+..-++
T Consensus 170 ~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r 249 (369)
T KOG0665|consen 170 TDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVR 249 (369)
T ss_pred cccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHH
Confidence 34566676 34999999998889999999999999999999986654221100 011222222
Q ss_pred HHhhcCc------ccccc-CCCC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 622 NLHENNQ------SLGLV-DPTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 622 ~~~~~~~------~~~~~-d~~l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++... ..+.+ |... .+.+.-.....-.++...+-.+|++|-+..++++
T Consensus 250 ~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~ 309 (369)
T KOG0665|consen 250 NYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR 309 (369)
T ss_pred HHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence 2222100 01111 1111 1112122334456788888999999999999875
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00025 Score=70.35 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCc-chhhcCCCCCcEE
Q 004413 21 LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKI-PDFIGNWTKLKSL 99 (755)
Q Consensus 21 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L 99 (755)
+.+.+.|++-+|.+.++ ....+++.|++|.|+-|.|+..- .|..|++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55677788888877632 22456888888888888886543 4677888888888888876321 1346788888999
Q ss_pred EccCCCCCCCCCc-----cccCCCCCCeee
Q 004413 100 RFQGNSFQGPIPS-----SLSKLASLDSLR 124 (755)
Q Consensus 100 ~L~~n~l~~~~p~-----~l~~l~~L~~L~ 124 (755)
+|..|.-.|.-+. .+.-|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9988887765544 355678888775
|
|
| >PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0022 Score=61.68 Aligned_cols=114 Identities=42% Similarity=0.695 Sum_probs=72.0
Q ss_pred cccCCCChhhhcccccCCCCcceeeccccCCCceEEeeeeeeeeccCChhhhccccceEeEEEEcCeeecccccchhhcC
Q 004413 336 QVTGTRTPELYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAG 415 (755)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~l~~~~~~~~~~~~ 415 (755)
.+.++.++.++++.+....++++.-.+..++.|.+.++|++.-.-. .......+.++|++++.|.....+||+....|
T Consensus 49 ~i~~t~d~~Lyqt~R~g~~~f~Y~ip~~~~G~Y~V~L~FaE~~~~~--~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G 126 (174)
T PF11721_consen 49 SIPGTTDDPLYQTERYGPSSFSYDIPVVPNGTYTVRLHFAELYFGA--SGGASGPGQRVFDVYVNGETVLKNFDIYAEAG 126 (174)
T ss_dssp TTS-HHHHHTTT-----SSSEEEEEE--S-EEEEEEEEEE-SSS----------SSSS-EEEEETTEEEEEEE-HHHHHS
T ss_pred cccCCCchhhhHhhcCCCCceEEEEecCCCcEEEEEEEeccccccc--cccccCCCceEEEEEecceEEEeccCHHHHcC
Confidence 3445556788898888766777655458899999999999976522 22334567899999999999999999999999
Q ss_pred CCCceEEEee-EeeecCCcceEEEEEcCCcccccCCC
Q 004413 416 GPNRAIIKNF-NATVSENHLEIHLFWAGKGTCCVPKQ 451 (755)
Q Consensus 416 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 451 (755)
+...++.+.+ ...+..+.+.+...+..++.||++..
T Consensus 127 ~~~~~~~~~~~~v~v~dg~L~i~f~~~~~~~~~i~~~ 163 (174)
T PF11721_consen 127 GFNKAAVRRFFNVTVTDGTLNIQFVWAGKGTLCIPFI 163 (174)
T ss_dssp SSS---EEEEEEEEEETTEEETTEEEE--SEEEEEEE
T ss_pred CCceEEEEEEEEEEEeCCcEEEEEEecCCCcEEeecc
Confidence 8775555555 77888888888878888899988754
|
It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0012 Score=77.08 Aligned_cols=91 Identities=26% Similarity=0.328 Sum_probs=59.4
Q ss_pred ccccchhhhhcC-----------CCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCC
Q 004413 569 HGYLAPEYAMRG-----------HLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~~-----------~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 636 (755)
..|+|||.+... .++.+.||||.|||+.||++ |++++... .|..+ +.|. -.|+.
T Consensus 191 tCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS------QL~aY-----r~~~---~~~~e 256 (1431)
T KOG1240|consen 191 TCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS------QLLAY-----RSGN---ADDPE 256 (1431)
T ss_pred eeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH------HHHhH-----hccC---ccCHH
Confidence 469999977541 37889999999999999999 67776531 12211 2221 01111
Q ss_pred C--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 637 L--TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 637 l--~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
. ...++. .+..+.+..++.+|++|-++.++++.-.+.
T Consensus 257 ~~Le~Ied~---~~Rnlil~Mi~rdPs~RlSAedyL~~yrG~ 295 (1431)
T KOG1240|consen 257 QLLEKIEDV---SLRNLILSMIQRDPSKRLSAEDYLQKYRGL 295 (1431)
T ss_pred HHHHhCcCc---cHHHHHHHHHccCchhccCHHHHHHhhhcc
Confidence 0 111111 355677888999999999999998875553
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0024 Score=73.55 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=61.4
Q ss_pred ccccchhhhhcCCCCc-cceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTE-KADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~-ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
-.|+|||.+....|.. -.||||-|||+..|++|+.|+......+... ......++.. + .............+
T Consensus 488 ~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~-----~~~~~~~~~~-~-~~~~~~~~~~lp~~ 560 (601)
T KOG0590|consen 488 DPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF-----KTNNYSDQRN-I-FEGPNRLLSLLPRE 560 (601)
T ss_pred CcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch-----hhhccccccc-c-ccChHHHHHhchhh
Confidence 4699999999888875 4799999999999999999986543322211 0000000000 0 00000111223445
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...++.+.++.+|.+|-||.+|++
T Consensus 561 ~~~~~~~~l~~~P~~R~ti~~i~~ 584 (601)
T KOG0590|consen 561 TRIIIYRMLQLDPTKRITIEQILN 584 (601)
T ss_pred HHHHHHHHccCChhheecHHHHhh
Confidence 566777889999999999999985
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.00031 Score=69.78 Aligned_cols=100 Identities=24% Similarity=0.276 Sum_probs=54.1
Q ss_pred CccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeee
Q 004413 45 LAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLR 124 (755)
Q Consensus 45 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 124 (755)
+.+.+.|++.+|.+.++ ....+|+.|+.|.|+-|+|+.. ..|..+++|++|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~----------------- 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE----------------- 76 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-----------------
Confidence 44566666666666432 2344566666666666666522 22455566666666666554
Q ss_pred cCCCCCCCCC-hhhhcCCCCCCEEEeeCccccCCCCc-----cccCCCCCCEEe
Q 004413 125 ISDIYNVSSS-LDFVMSLKNLTDLSLRNALITGSIPS-----GIGELQNLQTLD 172 (755)
Q Consensus 125 l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~-----~~~~l~~L~~L~ 172 (755)
... ...+.++++|+.|+|..|...+.-+. .+.-+++|+.||
T Consensus 77 -------sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 -------SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -------cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 221 12344555666666666655554333 234566666665
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0019 Score=70.37 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=34.4
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~ 607 (755)
.+|.|||++.+.+|- ..-|||+.||+|+-++-...||+.
T Consensus 732 v~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn 771 (772)
T KOG1152|consen 732 VDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN 771 (772)
T ss_pred ccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence 689999999988775 557999999999999999999864
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.002 Score=66.55 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCCcceeeceeeee-ecc-ccccchhhhhc--------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH
Q 004413 552 GGYGPVYKKTQLML-SNF-HGYLAPEYAMR--------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW 621 (755)
Q Consensus 552 g~fg~Vy~g~~~~i-~df-~gy~aPE~~~~--------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~ 621 (755)
|+|+.+++..+... .++ .+|.+||.... -.+|.+.|.|++|++++.|-||+-|++........ +|
T Consensus 187 g~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~---~~-- 261 (288)
T PF14531_consen 187 GDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADP---EW-- 261 (288)
T ss_dssp --GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTS---GG--
T ss_pred cChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccc---cc--
Confidence 55666666443333 344 56899997654 35899999999999999999999998865432110 00
Q ss_pred HHhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCC
Q 004413 622 NLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMR 663 (755)
Q Consensus 622 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~R 663 (755)
.+..+. +-.+.+-.|...-++.+|++|
T Consensus 262 --------------~f~~C~-~~Pe~v~~LI~~lL~~~~~~R 288 (288)
T PF14531_consen 262 --------------DFSRCR-DMPEPVQFLIRGLLQRNPEDR 288 (288)
T ss_dssp --------------GGTTSS----HHHHHHHHHHT-SSGGGS
T ss_pred --------------cchhcC-CcCHHHHHHHHHHccCCcccC
Confidence 122222 334455556666788888887
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0032 Score=60.93 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.1
Q ss_pred ccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 571 YLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 571 y~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
|-.||.+.. ..+.-.-|+|||||+|.+|+-.|.|+-...
T Consensus 198 fKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~ 237 (338)
T KOG0668|consen 198 FKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH 237 (338)
T ss_pred cCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCC
Confidence 567887765 567788899999999999999999976443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.00011 Score=81.70 Aligned_cols=85 Identities=27% Similarity=0.314 Sum_probs=47.9
Q ss_pred CCCCCEEEeeCccccCC----CCccccCCCC-CCEEeCCCCCCCCC----CcccccCC-CCCCEEEccCCcCCCCCCccc
Q 004413 141 LKNLTDLSLRNALITGS----IPSGIGELQN-LQTLDLSFNNLTGQ----IPRTLFNI-GSLNYLFLGNNSLSGTLPTQK 210 (755)
Q Consensus 141 l~~L~~L~L~~n~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~ 210 (755)
..++++|++.+|.++.. +...+...++ +..|++..|.+.+. ....+..+ ..++.++++.|.|+..-....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44566666666655421 1122333444 55577777777643 22233334 566777777777775433321
Q ss_pred ------CCCCCEEEeecCcCC
Q 004413 211 ------SENLQNIDLSYNHLS 225 (755)
Q Consensus 211 ------~~~L~~L~Ls~N~l~ 225 (755)
.+.++.+.+++|++.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 147778888888876
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.0044 Score=70.08 Aligned_cols=130 Identities=20% Similarity=0.123 Sum_probs=78.0
Q ss_pred CCCCCCEEEccCccCCCC--CcccccCCccCcEEEcccc-CCCCCCc----hhhhcCCCCCEEEccCCC-CCCCcchhhc
Q 004413 20 NLKELTVLSFGNNNFSGT--LPPEIGNLAKLEQLYLNSW-GAGGEIP----STYAKLRNMQTLWASDAP-FTGKIPDFIG 91 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~~~ 91 (755)
.++.|+.|.+..+.-... +-.....+++|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 468888888887743322 2334567888999998863 2212211 234556888889988887 5543333333
Q ss_pred C-CCCCcEEEccCCC-CCCCC-CccccCCCCCCeeecCCCCCCCCC--hhhhcCCCCCCEEEe
Q 004413 92 N-WTKLKSLRFQGNS-FQGPI-PSSLSKLASLDSLRISDIYNVSSS--LDFVMSLKNLTDLSL 149 (755)
Q Consensus 92 ~-l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~L 149 (755)
. +++|+.|.+.++. ++... -.....+++|++|+++++...... .....++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3 6788888877776 55322 223455778999999887765221 112334555555443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.00046 Score=76.81 Aligned_cols=181 Identities=26% Similarity=0.291 Sum_probs=124.2
Q ss_pred CCEEEccCccCCCCCcc----cccCCccCcEEEccccCCCCCCch----hhhcC-CCCCEEEccCCCCCCC----cchhh
Q 004413 24 LTVLSFGNNNFSGTLPP----EIGNLAKLEQLYLNSWGAGGEIPS----TYAKL-RNMQTLWASDAPFTGK----IPDFI 90 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~~----~p~~~ 90 (755)
+..|+|.+|.+...... .+..+..|+.|++++|.+....-. .+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77788888888754333 355577888888888888643221 12222 4567788888877743 45566
Q ss_pred cCCCCCcEEEccCCCCCC----CCCcccc----CCCCCCeeecCCCCCCCCChh----hhcCCCC-CCEEEeeCccccCC
Q 004413 91 GNWTKLKSLRFQGNSFQG----PIPSSLS----KLASLDSLRISDIYNVSSSLD----FVMSLKN-LTDLSLRNALITGS 157 (755)
Q Consensus 91 ~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~l~~n~~~~~~~~----~l~~l~~-L~~L~L~~n~l~~~ 157 (755)
.....|+.++++.|.+.. .++..+. ...++++|++.+|.+...... .+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667888888888887741 1233333 467888999988876643322 4455555 67799999988754
Q ss_pred ----CCccccCC-CCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCC
Q 004413 158 ----IPSGIGEL-QNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 158 ----~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+...+..+ ..++.++++.|.|+.. +...+..++.++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 23344445 6789999999999864 44556678899999999999885
|
|
| >PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.05 Score=37.36 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=19.7
Q ss_pred cccceeEEeehHHHHHHHHHHHHHHHhhhcc
Q 004413 482 KNHTGLIVGIAVPLGILGLIAISIVFYMRRK 512 (755)
Q Consensus 482 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 512 (755)
++...+++|++++++++++++.+++++++||
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhheEEec
Confidence 4456677788888777766665555544443
|
This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis []. |
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.024 Score=58.15 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=33.3
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcC
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p 604 (755)
.++||.||||......+..+|||+||+--+|+.-+..-
T Consensus 244 ~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq 281 (458)
T KOG1266|consen 244 SLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQ 281 (458)
T ss_pred cCCccccCCcCcccccccchhhhhhhHHHHHHHHheec
Confidence 45899999999999999999999999988888877643
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.017 Score=34.44 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=10.1
Q ss_pred CCEEEccCccCCCCCccccc
Q 004413 24 LTVLSFGNNNFSGTLPPEIG 43 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~ 43 (755)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555555555555 4554444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.014 Score=68.50 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=43.6
Q ss_pred eeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh
Q 004413 565 LSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME 612 (755)
Q Consensus 565 i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~ 612 (755)
|++++-|+|||++...-|..-.|-|+.|++++|.+-|+.|++...+++
T Consensus 218 vcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee 265 (1205)
T KOG0606|consen 218 VCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE 265 (1205)
T ss_pred ccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH
Confidence 677789999999999999999999999999999999999998876544
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.064 Score=56.42 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=58.5
Q ss_pred cccchhhhhcC--CC----CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 570 GYLAPEYAMRG--HL----TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 570 gy~aPE~~~~~--~~----t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
.-||||..... .. -+|+|.|+-|-+-+|+++.+.|++... ++.+-.- -+++. .+...++.
T Consensus 416 ~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rG---em~L~~r---~Yqe~--------qLPalp~~ 481 (598)
T KOG4158|consen 416 KLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRG---EMLLDTR---TYQES--------QLPALPSR 481 (598)
T ss_pred eecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccc---hheechh---hhhhh--------hCCCCccc
Confidence 47999987642 21 379999999999999999999987521 1111100 01111 12222333
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+...+-++...-++.+|.+||+..-....|.
T Consensus 482 vpp~~rqlV~~lL~r~pskRvsp~iAANvl~ 512 (598)
T KOG4158|consen 482 VPPVARQLVFDLLKRDPSKRVSPNIAANVLN 512 (598)
T ss_pred CChHHHHHHHHHhcCCccccCCccHHHhHHH
Confidence 4445667788889999999998765555543
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.11 Score=54.51 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=63.1
Q ss_pred cccccchhhhhc---CCCCccceeeeehheeehhhhCCcCCCCCchh-hHHHHHHHHHHHhhcCccccccCCCC-CCCCH
Q 004413 568 FHGYLAPEYAMR---GHLTEKADVFSFGVAALEIISGRANSDNSLDM-EKIYLLEWAWNLHENNQSLGLVDPTL-TEFND 642 (755)
Q Consensus 568 f~gy~aPE~~~~---~~~t~ksDVysfGvvllElltg~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~ 642 (755)
...|+|||.... ..++...|+||+|++++++++|+.|+...... ......+.+..... . ...... .....
T Consensus 171 t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~ 245 (384)
T COG0515 171 TPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPT----P-SLASPLSPSNPE 245 (384)
T ss_pred ccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCC----c-ccccccCccccc
Confidence 367999999987 68999999999999999999999996543321 01111222211111 0 000001 00011
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAM 672 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~ 672 (755)
.....+.++...|...+|..|.++.+....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 275 (384)
T COG0515 246 LISKAASDLLKKLLAKDPKNRLSSSSDLSH 275 (384)
T ss_pred hhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence 223456778888888899999999887653
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.027 Score=33.59 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=9.1
Q ss_pred CCEEEccCCCCCCCcchhhc
Q 004413 72 MQTLWASDAPFTGKIPDFIG 91 (755)
Q Consensus 72 L~~L~L~~n~l~~~~p~~~~ 91 (755)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555554 4444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.017 Score=65.21 Aligned_cols=130 Identities=21% Similarity=0.187 Sum_probs=83.9
Q ss_pred CCccCcEEEccccCCCCC--CchhhhcCCCCCEEEccCC-CCCCCc----chhhcCCCCCcEEEccCCC-CCCCCCcccc
Q 004413 44 NLAKLEQLYLNSWGAGGE--IPSTYAKLRNMQTLWASDA-PFTGKI----PDFIGNWTKLKSLRFQGNS-FQGPIPSSLS 115 (755)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~ 115 (755)
.++.|+.|.+..+.-... +-.....+++|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478999999987754333 3345678899999999873 222111 2234556899999999987 6644333333
Q ss_pred C-CCCCCeeecCCCCC-CCCChh-hhcCCCCCCEEEeeCccccCC--CCccccCCCCCCEEeC
Q 004413 116 K-LASLDSLRISDIYN-VSSSLD-FVMSLKNLTDLSLRNALITGS--IPSGIGELQNLQTLDL 173 (755)
Q Consensus 116 ~-l~~L~~L~l~~n~~-~~~~~~-~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L 173 (755)
. +++|+.|.+..+.. ...... ....+++|++|+|+.|..... +.....++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3 78999999877763 433333 445678899999998865311 2223445666666554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.0052 Score=59.71 Aligned_cols=86 Identities=14% Similarity=0.061 Sum_probs=55.5
Q ss_pred ccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCC
Q 004413 42 IGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121 (755)
Q Consensus 42 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 121 (755)
+......+.||++.|++. .+-..|..++.|..|+++.|.+. .+|..++.+..++++++.+|..+ ..|.++..++.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 444556666666666653 22334555666666777766665 56666777777777777777766 6677777777777
Q ss_pred eeecCCCCC
Q 004413 122 SLRISDIYN 130 (755)
Q Consensus 122 ~L~l~~n~~ 130 (755)
++++..+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 777766553
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.082 Score=58.97 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=32.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
+-|||||... -.....|-|||||++.|++||-.|+..
T Consensus 157 ~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~ 193 (612)
T KOG0603|consen 157 YEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG 193 (612)
T ss_pred hhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence 5799999988 567789999999999999999999864
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.1 Score=58.02 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=78.1
Q ss_pred CccCHHH-HHHHhcCCCCCCcccCCCCcceeeceeeeeeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCC
Q 004413 529 NTFSYAE-LRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 607 (755)
Q Consensus 529 ~~~~~~e-l~~at~~f~~~~~lg~g~fg~Vy~g~~~~i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~ 607 (755)
++|...+ ....+.+|.+-..||.|.|+.||+.. +..-|=..|++||... +.++.++|+|++|.|.+|..++......
T Consensus 252 ~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~-~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~~~ 329 (524)
T KOG0601|consen 252 NIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVS-KRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLPSV 329 (524)
T ss_pred heecccccceeecCCcceeEEccCCccccceeee-ecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcccccC
Confidence 4455555 45567789999999999999999754 2211225699999654 7889999999999999999998765432
Q ss_pred CchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 608 SLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 608 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.... .|. ..+.+-+. .++...-..++..+....++++|..|++...+.
T Consensus 330 g~~~------~W~--~~r~~~ip-------~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~ 377 (524)
T KOG0601|consen 330 GKNS------SWS--QLRQGYIP-------LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILT 377 (524)
T ss_pred CCCC------Ccc--ccccccCc-------hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHh
Confidence 2111 121 11111110 111111112233366677888888888877654
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.2 Score=56.78 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=33.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSD 606 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~ 606 (755)
.-|.||||+.....+.++|+||+||+++-+..|+++.-
T Consensus 173 ~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~ 210 (700)
T KOG2137|consen 173 LNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSII 210 (700)
T ss_pred cccccchhhccccccccccceeeeeEEEEEecCCcchh
Confidence 35999999999999999999999999999996666543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.011 Score=57.63 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=42.3
Q ss_pred hhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 17 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
.+..+...+.||++.|++. ..-..|..++.|..|+++.|++ ...|..+..+..+..+++..|+.+ ..|.+++.++++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3444445555555555543 2223344445555555555554 234445555555555555555444 445555555555
Q ss_pred cEEEccCCCC
Q 004413 97 KSLRFQGNSF 106 (755)
Q Consensus 97 ~~L~L~~n~l 106 (755)
+++++-.|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 5555554443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.28 Score=27.14 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=6.0
Q ss_pred CCCEEEccCccCC
Q 004413 23 ELTVLSFGNNNFS 35 (755)
Q Consensus 23 ~L~~L~Ls~n~l~ 35 (755)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5566666666654
|
... |
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.7 Score=50.30 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=40.4
Q ss_pred eeccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 565 LSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 565 i~df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
+.....|+|||...+......+|.|++|++++|.++|..|+....+
T Consensus 995 ~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tp 1040 (1205)
T KOG0606|consen 995 VVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETP 1040 (1205)
T ss_pred ccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcch
Confidence 3344789999999999999999999999999999999999876544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.65 E-value=0.24 Score=47.64 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=15.6
Q ss_pred cCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
.++.+|-++..|..+--..+..++.|+.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444555554444333334444444444444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=80.33 E-value=1.4 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=8.4
Q ss_pred CCCCEEEccCccCC
Q 004413 22 KELTVLSFGNNNFS 35 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~ 35 (755)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=80.33 E-value=1.4 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=8.4
Q ss_pred CCCCEEEccCccCC
Q 004413 22 KELTVLSFGNNNFS 35 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~ 35 (755)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 755 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-20 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-20 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 2e-17 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 2e-17 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-15 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 1e-14 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 2e-14 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 8e-05 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 8e-05 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 9e-05 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 1e-04 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 1e-04 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 5e-04 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 7e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 755 | |||
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 8e-56 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-54 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-36 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 2e-28 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 8e-54 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 3e-53 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-51 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-50 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 6e-49 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 1e-48 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 3e-32 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 2e-17 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 3e-51 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 6e-13 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 6e-44 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 3e-11 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 5e-41 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 6e-10 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 4e-38 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 5e-38 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 2e-37 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-36 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-30 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 3e-30 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 7e-15 | |
| 2jwp_A | 174 | Malectin, MGC80075; sugar binding, sugar binding p | 8e-37 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-35 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 8e-34 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 2e-32 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 9e-31 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 4e-25 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 1e-08 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 9e-07 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 5e-35 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-32 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 8e-29 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 4e-24 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-20 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 2e-16 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 3e-12 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 7e-34 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 3e-30 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 2e-24 | |
| 3fxi_A | 605 | TLR4, htoll, TOLL-like receptor 4; leucine rich re | 1e-20 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 2e-30 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 6e-30 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 3e-21 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 6e-07 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 4e-29 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 5e-26 | |
| 3jqh_A | 167 | C-type lectin domain family 4 member M; DC-signr, | 5e-16 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-29 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 2e-27 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-27 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-24 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 3e-22 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 6e-19 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 4e-05 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 5e-29 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 9e-28 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 2e-27 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 9e-26 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 3e-25 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-28 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 8e-26 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 6e-24 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-23 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 2e-17 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 1e-15 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 2e-28 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 3e-22 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 9e-19 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 1e-16 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 8e-09 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-24 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 5e-23 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-22 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 7e-22 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 2e-19 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 4e-18 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 9e-24 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-18 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 3e-17 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 1e-15 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 8e-23 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 3e-18 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 4e-12 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-22 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 8e-18 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 2e-16 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 9e-15 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 1e-12 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 5e-22 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 3e-21 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 9e-21 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 6e-20 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 2e-18 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 4e-14 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 1e-04 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 5e-22 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 3e-18 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-17 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 5e-15 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 1e-14 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 2e-09 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 7e-22 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 3e-18 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 4e-18 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 2e-16 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 1e-21 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 9e-17 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 3e-21 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 1e-10 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 7e-04 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 1e-20 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 4e-19 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-18 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-16 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 6e-14 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-13 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 3e-20 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 3e-18 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-16 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 2e-15 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 7e-14 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 9e-20 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 7e-17 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 4e-15 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 3e-08 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 4e-06 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-18 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-14 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 1e-07 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 1e-18 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 2e-15 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 1e-18 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 4e-18 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 2e-16 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 6e-06 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 9e-18 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 7e-17 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 5e-11 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 3e-05 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 1e-17 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 9e-09 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 3e-17 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 4e-09 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-17 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 6e-16 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 1e-13 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-13 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 4e-12 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 3e-11 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 5e-10 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 4e-17 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 4e-16 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-13 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 1e-10 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-09 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-08 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 2e-07 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 6e-17 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 3e-16 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 4e-10 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 7e-17 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 3e-14 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 2e-10 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-16 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-12 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 6e-12 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 6e-12 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 5e-10 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 2e-07 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 8e-06 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 4e-16 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 5e-16 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-14 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 3e-09 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 2e-06 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 8e-16 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 4e-13 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 6e-07 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 2e-04 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 3e-15 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 4e-13 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 2e-12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 4e-15 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 7e-15 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 1e-13 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 7e-07 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 2e-14 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 1e-04 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 9e-14 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-13 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 7e-11 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 2e-07 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-13 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-12 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-10 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 1e-07 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 3e-06 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 2e-05 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 5e-13 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 7e-12 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 6e-08 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-12 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 1e-07 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 3e-12 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 1e-06 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-11 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 5e-10 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 7e-06 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 1e-10 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 1e-09 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 7e-08 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 9e-04 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 6e-09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 3e-08 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 6e-09 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 1e-04 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 2e-08 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 5e-08 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 2e-06 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 3e-06 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 6e-08 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 7e-08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 2e-07 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 2e-07 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 4e-07 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 1e-06 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 4e-04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 4e-07 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 4e-04 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 7e-07 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 1e-05 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 2e-05 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 3e-05 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 4e-05 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 4e-05 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 3e-04 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 6e-05 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 5e-04 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 8e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 2e-04 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 2e-04 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 3e-04 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 4e-04 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 5e-04 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 7e-04 |
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 8e-56
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 30/241 (12%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
N G +P + L +L L + N SG +P + + L L + G +P + +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKL-KSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126
L N+ + +G IPD G+++KL S+ N G IP + + L
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------- 197
Query: 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTL 186
NL + L ++ G G +N Q + L+ N+L + + +
Sbjct: 198 ----------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240
Query: 187 FNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP-SWVTSNLQMNLVAN 243
+LN L L NN + GTLP + + L ++++S+N+L G P ++ AN
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 244 N 244
N
Sbjct: 301 N 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 2e-54
Identities = 64/252 (25%), Positives = 96/252 (38%), Gaps = 33/252 (13%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGT--LPPEIGNLAKLEQLYLNSW-GAG 59
+ + G + + L N +P + NL L LY+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
G IP AKL + L+ + +G IPDF+ L +L F N+ G +P S+S
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS---- 146
Query: 120 LDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT-LDLSFNNL 178
SL NL ++ I+G+IP G L T + +S N L
Sbjct: 147 --------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVT-SN 235
TG+IP T N+ +L ++ L N L G +N Q I L+ N L+ N
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 236 LQ-MNLVANNFT 246
L ++L N
Sbjct: 246 LNGLDLRNNRIY 257
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-36
Identities = 51/244 (20%), Positives = 91/244 (37%), Gaps = 56/244 (22%)
Query: 13 SVPRELGNLKEL----TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAK 68
+ ++LGN L N + G L ++ L L+
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-------- 64
Query: 69 LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG-NSFQGPIPSSLSKLASLDSLRISD 127
IP + N L L G N+ GPIP +++KL
Sbjct: 65 --------------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL---------- 100
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
L L + + ++G+IP + +++ L TLD S+N L+G +P ++
Sbjct: 101 --------------TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 188 NIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVTS-NLQ-MNLVA 242
++ +L + N +SG +P S+ ++ +S N L+G P + NL ++L
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 243 NNFT 246
N
Sbjct: 207 NMLE 210
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 42/182 (23%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKEL-TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
++ N SG++P G+ +L T ++ N +G +PP NL L + L+ G+
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
+ +N Q + + + +G L L + N G +P L++L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
SL +S +N NL G IP G G LQ + N
Sbjct: 272 SLNVS--FN------------NLC----------GEIPQG-GNLQRFDVSAYANNKCLCG 306
Query: 182 IP 183
P
Sbjct: 307 SP 308
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 8e-54
Identities = 74/261 (28%), Positives = 112/261 (42%), Gaps = 27/261 (10%)
Query: 3 LSVAHNVFSGSVPRELG-NLKELTVLSFGNNNFSGTLPPEI---GNLAKLEQLYLNSWGA 58
L+V+ N G L L VL N+ SG +L+ L ++
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
G++ ++ N++ L S F+ IP F+G+ + L+ L GN G ++S
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 119 SLDSLRISDIYN-----VSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLD 172
L L IS N + LK+L LSL TG IP + G L LD
Sbjct: 248 ELKLLNIS--SNQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 173 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFP 229
LS N+ G +P + L L L +N+ SG LP K L+ +DLS+N SG P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 230 SWV---TSNLQM-NLVANNFT 246
+ +++L +L +NNF+
Sbjct: 361 ESLTNLSASLLTLDLSSNNFS 381
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 3e-53
Identities = 86/253 (33%), Positives = 122/253 (48%), Gaps = 33/253 (13%)
Query: 3 LSVAHNVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEIGNL-AKLEQLYLNSWGAGG 60
L+++ N FSG +P + L ++ L VL N FSG LP + NL A L L L+S G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 61 EIPSTYAK--LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
I + +Q L+ + FTGKIP + N ++L SL N G IPSSL L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL- 441
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
L DL L ++ G IP + ++ L+TL L FN+L
Sbjct: 442 -----------------------SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLSGPFPSWVT--S 234
TG+IP L N +LN++ L NN L+G +P + ENL + LS N SG P+ +
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
Query: 235 NLQ-MNLVANNFT 246
+L ++L N F
Sbjct: 539 SLIWLDLNTNLFN 551
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-51
Identities = 56/254 (22%), Positives = 93/254 (36%), Gaps = 12/254 (4%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L S NV +V L +L L L N++ +G++ A L L L+ G
Sbjct: 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115
Query: 62 IPSTY--AKLRNMQTLWASDAPFTGKIPD-FIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+ + ++ L S L+ L NS G
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175
Query: 119 SLDSLRISDIY--NVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176
L+ I +S +D NL L + + + IP +G+ LQ LD+S N
Sbjct: 176 GCGELKHLAISGNKISGDVDVS-RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 177 NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNL 236
L+G R + L L + +N G +P ++LQ + L+ N +G P +++
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 237 QM----NLVANNFT 246
+L N+F
Sbjct: 294 DTLTGLDLSGNHFY 307
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 6e-50
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+S+++N +G +P+ +G L+ L +L NN+FSG +P E+G+ L L LN+ G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPSSLSKLASL 120
P+ K + GK +I N K GN FQG L++L++
Sbjct: 555 PAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+ I+ + + ++ L + +++G IP IG + L L+L N+++G
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFPS 230
IP + ++ LN L L +N L G +P S L IDLS N+LSGP P
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 6e-49
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 28/241 (11%)
Query: 3 LSVAHNVFSGSVPRELGN--LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
L ++ N FSG + L L L NN F+G +PP + N ++L L+L+ G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120
IPS+ L ++ L G+IP + L++L N G IPS LS
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC--- 489
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
NL +SL N +TG IP IG L+NL L LS N+ +G
Sbjct: 490 ---------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
IP L + SL +L L N +GT+P + ++ N ++G ++ ++
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG--KIAANFIAGKRYVYIKNDGMKKE 586
Query: 241 V 241
Sbjct: 587 C 587
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 1e-48
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 4/231 (1%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L + N+ G +P+EL +K L L N+ +G +P + N L + L++ GE
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
IP +L N+ L S+ F+G IP +G+ L L N F G IP+++ K S
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-SGK 564
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
+ K + G + L +++ G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 182 IPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPS 230
T N GS+ +L + N LSG +P + L ++L +N +SG P
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-32
Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 52/222 (23%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNN--NFSGTLPPEIGNLAKLEQLYLNSWGA 58
+A N +G + N N F G ++ L+ +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI----- 615
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+ + G N + L N G IP + +
Sbjct: 616 -------------------TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
L L +L N + +GSIP +G+L+ L LDLS N L
Sbjct: 657 YLFIL----------------------NLG-HNDI-SGSIPDEVGDLRGLNILDLSSNKL 692
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
G+IP+ + + L + L NN+LSG +P + +
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG--QFETFPPA 732
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-17
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 131 VSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIG 190
V+ D V S+ +L+ L ++ S + L L++L LS +++ G +
Sbjct: 45 VTCRDDKVTSI-DLSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSA 100
Query: 191 SLNYLFLGNNSLSGTLPTQKS----ENLQNIDLSYNHLSGPFPSWVTSNLQ----MNLVA 242
SL L L NSLSG + T S L+ +++S N L P L ++L A
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 243 NNFT 246
N+ +
Sbjct: 161 NSIS 164
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 3e-51
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNS--LDMEKIYLLEWAWNLHENN 627
G++APEY G +EK DVF +GV LE+I+G+ D + + + + LL+W L +
Sbjct: 200 GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEK 259
Query: 628 QSLGLVDPTL-TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676
+ LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 260 KLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 514 DNDDEEVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
+D EV +G + FS EL+ A+ +F N LG GG+G VYK
Sbjct: 6 AEEDPEVHLG---QLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 48
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 6e-44
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
Y+APE +RG +T K+D++SFGV LEII+G D + + LL+ + + +
Sbjct: 199 TAYMAPEA-LRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ--LLLDIKEEIEDEEK 255
Query: 629 SL-GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
++ +D + + + + VA C RP + +V +L
Sbjct: 256 TIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 517 DEEVLVGIDSKPNTFSYAELRSATQDFDP------SNKLGEGGYGPVYK 559
+ + L D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 1 ENKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 5e-41
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
GY+ PEY ++G LTEK+DV+SFGV E++ R+ SL E + L EWA H N Q
Sbjct: 205 LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ 264
Query: 629 SLGLVDPTLT-EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679
+VDP L + + + A+ C S RP M V+ L + +
Sbjct: 265 LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 530 TFSYAELRSATQDFDPSNKLGEGGYGPVYK 559
+L AT +FD +G G +G VYK
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYK 57
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 4e-38
Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 33/275 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNF--------SGTLPPEIGNLAKLEQLYLN 54
+ V + +P L L E+ +++ N + K++ +Y+
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 55 S-WGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 113
+ ++ K++ + L GK+P F G+ KL SL N +
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANF 372
Query: 114 LSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITG-------SIPSGIGE 164
+++L + + + + S+ ++ + I + +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG-------TLPTQ--KSENLQ 215
N+ +++LS N ++ L+ + L N L+ + L
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 216 NIDLSYNHLSGPFPSWVTSNLQ----MNLVANNFT 246
+IDL +N L+ + + L ++L N+F+
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 5e-38
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 28/262 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPP--EIGNLAKLEQLYLN------ 54
L++A+N + G +++ LSF +N +P + +++ + + +
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 55 -SWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG----- 108
+ T K N+ ++ S+ + + + L S+ GN
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 109 --PIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164
+ L S+ + + +S +L L + L + P+
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT-TLPYLVGIDLSYNSFSK-FPTQPLN 534
Query: 165 LQNLQTL------DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID 218
L+ D N + P + SL L +G+N + + + + N+ +D
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLD 593
Query: 219 LSYNHLSGPFPSWVTSNLQMNL 240
+ N S+V ++ +
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGM 615
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-37
Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 26/264 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSG----TLPPEIGNLAKLEQLYLNSWGA 58
LS+ SG VP +G L EL VL+ G++ P I EQ
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145
Query: 59 GGEIPSTYAKLR--NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSK 116
+ ++ + P I K + N+ + ++ +
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR 204
Query: 117 LASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176
L L + + V+ ++ +N + L++L +++
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEVYNC 259
Query: 177 NLTGQIPRTLFNIGSLNYLFLGNNSL--------SGTLPTQ--KSENLQNIDLSYNHL-S 225
++P L + + + + N E +Q I + YN+L +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 226 GPFPSWVT--SNLQM-NLVANNFT 246
P + + L M + N
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLE 343
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 7e-36
Identities = 47/261 (18%), Positives = 87/261 (33%), Gaps = 35/261 (13%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ + + + NLK+LT + N LP + L +++ + +
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC------ 282
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ-GPIPSSLSKLASL 120
N + K++ + N+ + P+ +SL K+ L
Sbjct: 283 ---------NRGIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Query: 121 DSLRISDIYN-VSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
L YN + L S L L+L IT + G + ++ L + N L
Sbjct: 333 GMLECL--YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390
Query: 180 GQIPRTLF--NIGSLNYLFLGNNSLSGTLPTQ---------KSENLQNIDLSYNHLSGPF 228
IP ++ ++ + N + K N+ +I+LS N +S
Sbjct: 391 Y-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449
Query: 229 PSWVT--SNLQM-NLVANNFT 246
+ S L NL+ N T
Sbjct: 450 KELFSTGSPLSSINLMGNMLT 470
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-30
Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 34/250 (13%)
Query: 3 LSVAHNVFSGSVPR--ELGNLKELTVLSFGNNNFSG-------TLPPEIGNLAKLEQLYL 53
LS AHN +P + ++ ++ + F N L P + + L
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440
Query: 54 NSWGAGGEIPSTYAKLRNMQTLWASD-------APFTGKIPDFIGNWTKLKSLRFQGNSF 106
++ ++ + ++ + N L S+ + N
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Query: 107 QGPIPSSL--SKLASLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNAL------ITGS 157
+ + L L + +S YN S ++ L +RN
Sbjct: 501 TK-LSDDFRATTLPYLVGIDLS--YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557
Query: 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQ 215
P GI +L L + N++ + + +++ L + +N +
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 216 NIDLSYNHLS 225
L Y+
Sbjct: 615 MYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-30
Identities = 36/259 (13%), Positives = 74/259 (28%), Gaps = 39/259 (15%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLW 76
L + +T LS SG +P IG L +LE L L S + + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS---------------HGEKV- 119
Query: 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD--SLRISDIYNVSSS 134
P I + + +Q + D I+ S
Sbjct: 120 ----NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175
Query: 135 LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNY 194
T + + IT + + L L+ + + + + + Y
Sbjct: 176 KKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234
Query: 195 LFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVT--SNLQM-NLVANNFT--- 246
T + ++L ++++ P+++ +Q+ N+ N
Sbjct: 235 -----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 247 ---FDRSNISVFPGLHCLQ 262
D ++ P +Q
Sbjct: 290 QLKDDWQALADAPVGEKIQ 308
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 18/166 (10%)
Query: 93 WTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNA 152
W L + F ++ + LD SL+ S +T LSL
Sbjct: 39 WDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLN---SNGRVTGLSLEGF 91
Query: 153 LITGSIPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGT--- 205
+G +P IG+L L+ L L + P+ + S T
Sbjct: 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151
Query: 206 -LPTQKSENLQNIDLSYNHLSGPFPSWV---TSNLQMNLVANNFTF 247
P + +L ++ + + Q+ ++NN TF
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
|
| >2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 8e-37
Identities = 37/194 (19%), Positives = 62/194 (31%), Gaps = 34/194 (17%)
Query: 277 FSIKCGGKQMR-ADNIVYEADNSSLSASSYAVTNTEKWGVSNVGFFYERENPAYVLNTLG 335
+++ GG+ I Y D + Y +
Sbjct: 8 WAVNAGGESHVDVHGIHYRKDPLEGRVGRAS---------------------DYGMKLPI 46
Query: 336 QVTGTRTPELYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVF 395
+ LYQT R + S Y E G Y + L FAE + ++VF
Sbjct: 47 LRSNPEDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVY--------FAQSQQKVF 98
Query: 396 DIYIQGTLRWKDFDISKEAGGPNRAIIKNFNATVSENHLEIHLF---WAGKGTCCVPKQG 452
D+ + G KD DI G + A + ++ + L + + GK + K
Sbjct: 99 DVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGY 157
Query: 453 DYGPAISALSVVSA 466
P + AL ++
Sbjct: 158 YDNPKVCALFIMKG 171
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 1e-35
Identities = 60/272 (22%), Positives = 89/272 (32%), Gaps = 14/272 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L++ HN +LT L G N S P L L+ L L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
T+A N+ L + L +L N + +L +L
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149
Query: 123 LRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
L +S+ I + S + + +L L L + I P + L L L+ L
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209
Query: 181 QIPRTLF---NIGSLNYLFLGNNSLSGTLPTQ----KSENLQNIDLSYNHLSGPFPSWVT 233
+ L S+ L L N+ LS T T K NL +DLSYN+L+
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269
Query: 234 --SNLQM-NLVANNFTFDRSNISVFPGLHCLQ 262
L+ L NN GL ++
Sbjct: 270 WLPQLEYFFLEYNNIQ--HLFSHSLHGLFNVR 299
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 8e-34
Identities = 50/265 (18%), Positives = 88/265 (33%), Gaps = 21/265 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPP-EIGNLAKLEQLYLNSWGAGGE 61
L++ N S L L VL G N L E L + ++YL+
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 62 IPSTYAKLRNMQTLWASDAPFTG--KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
+++A + ++Q L P L L N+ L L
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 120 LDSLRISD--------IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
L+ L + N + F+ L +L L+L + +L L+ +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE---NLQNIDLSYNHLSG-- 226
DL NNL N SL L L N ++ NL +D+ +N
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Query: 227 ----PFPSWV-TSNLQMNLVANNFT 246
F +W+ ++ + +++++
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYL 650
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 21/277 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAGG 60
L + N K L L +N S T L L++L L N A
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS---KL 117
+++ L S P +L L + L
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221
Query: 118 ASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
S+ +L +S+ + S++ + NLT L L + L L+ L +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE-----------NLQNIDLSYNHL 224
NN+ +L + ++ YL L + ++ L+++++ N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 225 SGPFPSWVT--SNLQM-NLVANNFTFDRSNISVFPGL 258
G + T NL+ +L + + F L
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 9e-31
Identities = 50/266 (18%), Positives = 81/266 (30%), Gaps = 41/266 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L +++N + L +L NN + L + L L
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK-------- 304
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
R+ S A L+ L + N G + + L +L
Sbjct: 305 -------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L +S + SL+ LT+ + + + L L+L+ N ++
Sbjct: 358 LSLS--NSF-------TSLRTLTNETFVSLAHS-----------PLHILNLTKNKISKIE 397
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVT--SNLQ 237
+G L L LG N + L + EN+ I LSYN + +LQ
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457
Query: 238 M-NLVANNFTFDRSNISVFPGLHCLQ 262
L S+ S F L L
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLT 483
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-25
Identities = 45/243 (18%), Positives = 72/243 (29%), Gaps = 57/243 (23%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
VP +L +TVL+ +N ++L L + N
Sbjct: 18 QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG---------------FNT 60
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
+ P+ LK L Q N + +
Sbjct: 61 ---------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA----------------- 94
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
NLT+L L + I + + +NL TLDLS N L+ T + +L
Sbjct: 95 -------FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 193 NYLFLGNNSLSG----TLPTQKSENLQNIDLSYNHLSGPFPSWVTS--NLQM-NLVANNF 245
L L NN + L + +L+ ++LS N + P + L L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 246 TFD 248
Sbjct: 208 GPS 210
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 33/225 (14%), Positives = 48/225 (21%), Gaps = 76/225 (33%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
L + + G L L L +L+ +N F +L +L+ + L
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL----- 569
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120
N N LKSL Q N
Sbjct: 570 ----------NN---------LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA--- 607
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+NL LD+ FN
Sbjct: 608 --------------------------------------------FRNLTELDMRFNPFDC 623
Query: 181 QIP-----RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
N N L ++ L T P ++ D S
Sbjct: 624 TCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 167 NLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHL 224
+ + D S LT Q+P L ++ L L +N L + L ++D+ +N +
Sbjct: 5 SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 225 SGPFPSWVT--SNLQM-NLVANNFT 246
S P L++ NL N +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELS 86
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-35
Identities = 49/259 (18%), Positives = 82/259 (31%), Gaps = 33/259 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ + + NLK+LT + N LP + +L +L+ L +
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC------ 524
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASL 120
N A ++ D K++ N+ + P +SL K+ L
Sbjct: 525 ---------NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE-LQNLQTLDLSFNNLT 179
L +N L+ + LTDL L I IP ++ L S N L
Sbjct: 576 GLLDCV--HNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 180 GQIPRTLF--NIGSLNYLFLGNNSLSG-------TLPTQKSENLQNIDLSYNHLSGPFPS 230
IP ++ + + N + ++ K N + LSYN +
Sbjct: 633 Y-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691
Query: 231 WVT--SNLQM-NLVANNFT 246
S + L N T
Sbjct: 692 LFATGSPISTIILSNNLMT 710
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 36/262 (13%), Positives = 85/262 (32%), Gaps = 30/262 (11%)
Query: 3 LSVAHNVFSGSVPRELG-NLKELTVLSFGNNNFSGTLPP--EIGNLAKLEQLYLN----- 54
L + +N +P + ++ L F +N +P ++ + + +
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 55 SWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ------- 107
S G K N T+ S + + + ++ N
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Query: 108 GPIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGEL 165
P + L ++ + + ++S +L L+++ + + S P+
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT-TLPYLSNMDVSYNCFS-SFPTQPLNS 775
Query: 166 QNLQTLDLSF------NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
L+ + N + Q P + SL L +G+N + + + + L +D+
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDI 834
Query: 220 SYNHL-SGPFPSWVTSNLQMNL 240
+ N S S V ++ +
Sbjct: 835 ADNPNISIDVTS-VCPYIEAGM 855
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 8e-29
Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 29/281 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+A G VP +G L EL VLSFG ++ + + +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 63 PSTY-AKLRNMQTLWASDAPFTGK---IPDFIGNWTKLKSLRFQGNSFQ-GPIPSSLSKL 117
+ + + P + LK + + + I ++ +L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 118 ASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
L + ++ S + + D + A + L++L ++L
Sbjct: 448 TKLQIIYFAN-----SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502
Query: 178 LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS-----------ENLQNIDLSYNHLSG 226
Q+P L+++ L L + N + +Q + YN+L
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 227 PFPSWVTSNLQ----MNLVANNFTFDRSNISVFPGLHCLQR 263
S + ++ V N + F L
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRH----LEAFGTNVKLTD 599
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-24
Identities = 36/263 (13%), Positives = 76/263 (28%), Gaps = 24/263 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGGE 61
+ +++ +L N +T LS G +P IG L +L+ L +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG---PIPSSLSKLA 118
+L + F+ +L ++ P
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 119 SLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
SL +I ++ N + + + L L + N+ T + + + + +
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAK 478
Query: 178 LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVT-- 233
+ N+ L + L N LP LQ+++++ N
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 234 ---------SNLQM-NLVANNFT 246
+Q+ + NN
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLE 561
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 2e-20
Identities = 24/219 (10%), Positives = 60/219 (27%), Gaps = 26/219 (11%)
Query: 3 LSVAHNVFSG-----SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNS-- 55
+ ++N S + + ++ N + + + L++
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 56 -----WGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQG 108
+ Y + T+ T + D L ++ N F
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS 767
Query: 109 PIPSSLSKLASLDSLRISDIYNVSSSL------DFVMSLKNLTDLSLRNALITGSIPSGI 162
P+ + L + I + + + + +L L + + I + +
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825
Query: 163 GELQNLQTLDLSFNNLT-GQIPRTLFNIGSLNYLFLGNN 200
L LD++ N + I + Y+ L +
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 30/197 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFS-------GTLPPEIGNLAKLEQLYL-- 53
+++++N ++ + NN + N L + L
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737
Query: 54 NSWGAGGEIPSTYA--KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLR------FQGNS 105
N + + L + + S F+ P N ++LK+ +GN
Sbjct: 738 NKLT---SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793
Query: 106 FQGPIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLR-NALITGSIPSGI 162
P+ ++ SL L+I I V L L L + N I+ + S
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-----TPQLYILDIADNPNISIDVTSVC 848
Query: 163 GELQNLQTLDLSFNNLT 179
++ L ++
Sbjct: 849 PYIEAG-MYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 25/193 (12%), Positives = 58/193 (30%), Gaps = 9/193 (4%)
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
I D+ ++L + + ++ + + + D++ +
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV-D 318
Query: 138 VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFL 197
+ + +T LSL G +P IG+L L+ L ++ T + +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 198 GNNSLSGTLPTQKSENLQNI---DLSYNHLS-----GPFPSWVTSNLQMNLVANNFTFDR 249
+ + + Q + DL + ++ P +L+ + N
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 250 SNISVFPGLHCLQ 262
L LQ
Sbjct: 439 FISKAIQRLTKLQ 451
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-34
Identities = 47/257 (18%), Positives = 84/257 (32%), Gaps = 13/257 (5%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNN--NFSGTLPPEIGNLAKLEQLYLNSWGAG 59
L + G +L L L N +F G L+ L L+ G
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+ S + L ++ L + + L L + + L+
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 119 SLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
SL+ L+++ + L D L+NLT L L + P+ L +LQ L++S NN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 178 LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSG-----PFP 229
+ SL L N + + + +L ++L+ N + F
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565
Query: 230 SWVTSNLQMNLVANNFT 246
W+ Q+ +
Sbjct: 566 QWIKDQRQLLVEVERME 582
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-30
Identities = 43/263 (16%), Positives = 72/263 (27%), Gaps = 38/263 (14%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+P L L N + +L+ L L+ Y L ++
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
TL + P + L+ L + + L +L L ++
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH----- 133
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
N + + +P L NL+ LDLS N + L + +
Sbjct: 134 ------------------NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 193 NY----LFLGNNSLSGTLPTQ-KSENLQNIDLSYNHLSGPFPSWV--------TSNLQMN 239
L L N ++ P K L + L N S L +
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 240 LVANNFTFDRSNISVFPGLHCLQ 262
N ++ + S GL L
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLT 258
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 54/278 (19%), Positives = 94/278 (33%), Gaps = 24/278 (8%)
Query: 3 LSVAHNVF-SGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN---SWGA 58
L+VAHN+ S +P NL L L +N ++ L ++ L L+ S
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQG------PIP 111
I K + L + + + I L+ R F+
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 112 SSLSKLASLD--SLRISDIYNVSSSLDFVMS-LKNLTDLSLRNALITGSIPSGIGELQNL 168
S+L L +L R++ + + + + L N++ SL + I
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS--- 225
Q L+L L ++ L + +N +L+ +DLS N LS
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFT---SNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 226 -GPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCL 261
+ T++L+ ++L N SN L L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 1e-20
Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 9/193 (4%)
Query: 3 LSVAHNVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAG 59
L H+ +L+ L L + + L+ LE L + NS+
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QE 459
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
+P + +LRN+ L S P + + L+ L N+F L S
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 120 LDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG--IGELQNLQTLDLSF 175
L L S I +L L+L + + +++ + L +
Sbjct: 520 LQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578
Query: 176 NNLTGQIPRTLFN 188
+ P
Sbjct: 579 ERMECATPSDKQG 591
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 49/252 (19%), Positives = 90/252 (35%), Gaps = 28/252 (11%)
Query: 13 SVPRELGNLKE--LTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAGGEIPSTYAK 68
+ L + + L + P + L+ L+ + + E+P T +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQ 125
Query: 69 LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNS---------FQGPIPSSLSKLAS 119
++TL + P +P I + +L+ L + L +
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 120 LDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
L SLR+ I ++ +S+ +L+NL L +RN+ ++ ++ I L L+ LDL
Sbjct: 185 LQSLRLEWTGIRSLPASIA---NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240
Query: 178 LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVT-- 233
P L L L + S TLP + L+ +DL PS +
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Query: 234 SNLQMNLVANNF 245
+ LV +
Sbjct: 301 PANCIILVPPHL 312
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 6e-30
Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 19/213 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+++ +P + L L+ N LP I +L +L +L + + E+
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166
Query: 63 PS---------TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 113
P + L N+Q+L +P I N LKSL+ + + + +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPA 224
Query: 114 LSKLASLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLR--NALITGSIPSGIGELQNLQT 170
+ L L+ L + + L L L+ + L+ ++P I L L+
Sbjct: 225 IHHLPKLEELDLRG-CTALRNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEK 281
Query: 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203
LDL ++P + + + + + + +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 3e-21
Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 26/229 (11%)
Query: 12 GSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
GS + L F + + + N W A N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNN 57
Query: 72 MQTLWASDAPFTGKIPDFIGNWT--KLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD-- 127
Q + D + + T +L + P +L+ L + I
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115
Query: 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187
+ + ++ L L+L + ++P+ I L L+ L + ++P L
Sbjct: 116 LMELPDTMQ---QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 188 NIG---------SLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLS 225
+ +L L L + +LP + NL+++ + + LS
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 11/122 (9%)
Query: 131 VSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIG 190
+ SS +L + + + + Q D + + + N
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56
Query: 191 SLNYLFLGNNSLS---GTLPTQKSENLQNIDLSYNHLSGPFPSWVT--SNLQ-MNLVANN 244
+ +L L ++L L FP S+LQ M + A
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115
Query: 245 FT 246
Sbjct: 116 LM 117
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-29
Identities = 49/273 (17%), Positives = 89/273 (32%), Gaps = 14/273 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L S L N K L L G+N+ S P+ KL+ L +
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 63 PSTYAKLRNMQ--TLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS--KLA 118
+ L+ +L + G I + +SL F G I L +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 119 SLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176
SL D ++S ++ + ++ ++L+ + LQ LDL+
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
Query: 177 NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLSGPFPSWVTS 234
+L+ ++P L + +L L L N +L ++ + N +
Sbjct: 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 235 NLQ----MNLVANNFTFDRSNISVFPGLHCLQR 263
NL+ ++L ++ L LQ
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 61/276 (22%), Positives = 103/276 (37%), Gaps = 20/276 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN-SWGAGGE 61
L + N S + ++L VL F NN ++ +L + L LN +
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGN--WTKLKSLRFQGNSFQGPIPSSLSKLA- 118
I Q+L I + N L F+ + P+ L
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 119 -SLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
S++S+ + +N+SS+ F L +L L ++ +PSG+ L L+ L LS
Sbjct: 254 MSVESINLQKHYFFNISSNT-FH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGPFPSWV 232
N + N SL +L + N+ L T + ENL+ +DLS++ + +
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Query: 233 T----SNLQM-NLVANNFTFDRSNISVFPGLHCLQR 263
S+LQ NL N ++ F L+
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLEL 404
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-27
Identities = 52/260 (20%), Positives = 92/260 (35%), Gaps = 17/260 (6%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPE-IGNLAKLEQLYL--NSWGAG 59
L ++ N F N LT LS N L + NL L +L L +
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLA 118
L ++Q+L S + +L+ L + S L
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 119 SLDSLRISDIYNVSSSL--DFVMSLKNLTDLSLRNALITGSI---PSGIGELQNLQTLDL 173
L L +S +++ L L L+L+ + + L L+ L L
Sbjct: 426 LLKVLNLS--HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQN--IDLSYNHLSGPFPSW 231
SF +L+ ++ +N++ L +N L+ + + +L+ ++L+ NH+S PS
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 232 VT--SNLQM-NLVANNFTFD 248
+ S + NL N
Sbjct: 543 LPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 48/261 (18%), Positives = 73/261 (27%), Gaps = 15/261 (5%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+P L L F N L L L L T+ +
Sbjct: 26 EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
TL + P + LK L F L +L+SL + + S
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQ--TLDLSFNNLTGQIPRTLFNIG 190
L + L L +N I + LQ +L+L+ N++ G I F+
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSA 202
Query: 191 SLNYLFLGNNSLSGTLPTQKS----ENLQNIDLSYNHLS----GPFPSWVTSNLQM-NLV 241
L G + ++L F +++ NL
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 242 ANNFTFDRSNI-SVFPGLHCL 261
+ F SN F GL L
Sbjct: 263 KHYFFNISSNTFHCFSGLQEL 283
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-22
Identities = 47/272 (17%), Positives = 80/272 (29%), Gaps = 16/272 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + N L K L L F S + N LE LYL S
Sbjct: 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK--SLRFQGNSFQGPIPSSLSKLASL 120
++ L + + + + + SL GN G I A
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVF 204
Query: 121 DSLRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGIGELQ--NLQTLDLSFN 176
SL N+ + ++++L + + P+ L ++++++L +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264
Query: 177 NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLSGPFPSWVTS 234
T L L L LS LP+ L+ + LS N S
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISAS 322
Query: 235 NL----QMNLVANNFTFDRSNISVFPGLHCLQ 262
N +++ N + L L+
Sbjct: 323 NFPSLTHLSIKGNTKRLELGT-GCLENLENLR 353
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-19
Identities = 26/202 (12%), Positives = 58/202 (28%), Gaps = 10/202 (4%)
Query: 69 LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD- 127
+ + L S L L + LD+L ++
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 128 -IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTL 186
+ ++ + + K L L I+ + + L++L L N+++
Sbjct: 92 PLIFMAETA--LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149
Query: 187 FNIGSLNYLFLGNNSLS----GTLPTQKSENLQNIDLSYNHLSGPFPSWV--TSNLQMNL 240
F L L NN++ + + + +++L+ N ++G P +N
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209
Query: 241 VANNFTFDRSNISVFPGLHCLQ 262
+ L
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLW 231
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLSG 226
+T + L +IP TL N S L N L T + NL +DL+ +
Sbjct: 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-29
Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 13/223 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L++ N S L N+ L L+ + I NL L L LN
Sbjct: 137 LNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDIS 193
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P A L ++ A T P + N T+L SL+ N P L+ L+ L
Sbjct: 194 PL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L I N S ++ V L L L++ + I+ S + L L +L L+ N L +
Sbjct: 248 LEIG--TNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
+ + +L LFL N ++ P + + D + +
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 9e-28
Identities = 55/254 (21%), Positives = 91/254 (35%), Gaps = 20/254 (7%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+ L NL L L +N S + NL K+ L L S + + +
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNL-GANHNLSDLSPLSNMTGL 157
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
L +++ P I N T L SL N + P L+ L SL N
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY--VNQI 211
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
+ + V ++ L L + N IT P + L L L++ N ++ + ++ L
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKL 267
Query: 193 NYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT--SNLQM-NLVANNFTFDR 249
L +G+N +S L ++ L+ N L + +NL L N+ T
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT--- 324
Query: 250 SNISVFPGLHCLQR 263
+I L +
Sbjct: 325 -DIRPLASLSKMDS 337
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 18/247 (7%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLW 76
+ L L L+ N + + NL KL LY+ + S L N++ L+
Sbjct: 61 GIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGT--NKITDISALQNLTNLRELY 116
Query: 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD 136
++ + P + N TK+ SL N S LS + L+ L +++ + +
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTE--SKVKDVT 171
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
+ +L +L LSL I P + L +L N +T P + N+ LN L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNISVF 255
+GNN ++ P L +++ N +S + L+M N+ +N + +ISV
Sbjct: 228 IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS----DISVL 283
Query: 256 PGLHCLQ 262
L L
Sbjct: 284 NNLSQLN 290
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 20/248 (8%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
+L E + + L + +L + I L N++ L
Sbjct: 18 DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNL 73
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
+ T P + N KL +L N S+L L +L L +++ + S +
Sbjct: 74 NGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNE--DNISDISP 127
Query: 138 VMSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
+ +L + L+L N + S S + + L L ++ + + P + N+ L L
Sbjct: 128 LANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNISVF 255
L N + P +L N ++ P + L + N T ++S
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT----DLSPL 239
Query: 256 PGLHCLQR 263
L L
Sbjct: 240 ANLSQLTW 247
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 18/240 (7%)
Query: 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFT 83
L+ + P +LA+ + L A T +L ++ L +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQK--ASVTDVVTQEELESITKLVVAGEKVA 57
Query: 84 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKN 143
I I T L+ L GN P LS L L +L I N + + + +L N
Sbjct: 58 -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG--TNKITDISALQNLTN 111
Query: 144 LTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203
L +L L I+ P + L + +L+L N+ + L N+ LNYL + + +
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168
Query: 204 GTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNISVFPGLHCLQ 262
P +L ++ L+YN + P ++L N T +I+ + L
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT----DITPVANMTRLN 224
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 16/242 (6%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N S L L L L NN S +G L L++L LN +
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG--NQLKD 235
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
T A L N+ L ++ + P + TKL L+ N P L+ L +L +
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L +++ N + + +LKNLT L+L I+ P + L LQ L N ++
Sbjct: 292 LELNE--NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-- 345
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
+L N+ ++N+L G+N +S P + + L+ + ++ + N V
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
Query: 243 NN 244
N
Sbjct: 406 NV 407
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-26
Identities = 75/263 (28%), Positives = 111/263 (42%), Gaps = 26/263 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ + +N + P L NL LT L+ NN + + NL L +L L+S I
Sbjct: 95 ILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSS----NTI 146
Query: 63 --PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120
S + L ++Q L + T P + N T L+ L N S L+KL +L
Sbjct: 147 SDISALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNL 201
Query: 121 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+SL ++ N S + + L NL +LSL + + L NL LDL+ N ++
Sbjct: 202 ESLIATN--NQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQ-MN 239
P L + L L LG N +S P L N++L+ N L P NL +
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 315
Query: 240 LVANNFTFDRSNISVFPGLHCLQ 262
L NN + +IS L LQ
Sbjct: 316 LYFNNIS----DISPVSSLTKLQ 334
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 20/246 (8%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L E G N + T+ +L ++ L + G + L N+ +
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADR--LGIKSIDGVEYLNNLTQINF 75
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
S+ T P + N TKL + N P L+ L +L L + + N + +D
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN--NQITDIDP 129
Query: 138 VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFL 197
+ +L NL L L + I+ S + L +LQ L N +T P L N+ +L L +
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 184
Query: 198 GNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNISVFP 256
+N +S K NL+++ + N +S P + +NL +L N +I
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK----DIGTLA 240
Query: 257 GLHCLQ 262
L L
Sbjct: 241 SLTNLT 246
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 24/249 (9%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI--PSTYAKLRNMQT 74
+ L LT ++F NN + + NL KL + +N +I + A L N+
Sbjct: 63 GVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMN----NNQIADITPLANLTNLTG 116
Query: 75 LWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSS 134
L + T P + N T L L N+ S +S L+ L SL+ N +
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTD 169
Query: 135 LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNY 194
L + +L L L + + ++ S + +L NL++L + N ++ P L + +L+
Sbjct: 170 LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225
Query: 195 LFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNIS 253
L L N L NL ++DL+ N +S P + L L AN + NIS
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----NIS 281
Query: 254 VFPGLHCLQ 262
GL L
Sbjct: 282 PLAGLTALT 290
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 52/245 (21%), Positives = 82/245 (33%), Gaps = 14/245 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+ N L +L LT L NN S + L KL +L L +
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNIS 281
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P A L + L ++ P I N L L N+ P +S L L
Sbjct: 282 PL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L + N S + + +L N+ LS + I+ P + L + L L+ T
Sbjct: 336 LFFYN--NKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
N+ N + +L + D+++N S T + + +
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGK 451
Query: 243 NNFTF 247
TF
Sbjct: 452 GTTTF 456
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 13/205 (6%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + N S P L L LT L N I NL L L L
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P + L +Q L+ + + + N T + L N P L+ L +
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
L ++D ++ +++ ++ + + P+ I + + D+++N +
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YT 436
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLP 207
+ + G + SGT+
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
+ + LA + + L +T L I G+ L NL +
Sbjct: 18 FTDTALAEKMKTVLG--KTNVTDTVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSW 231
+ S N LT P L N+ L + + NN ++ P NL + L N ++ P
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 131
Query: 232 VTSNLQM-NLVANNFTFDRSNISVFPGLHCLQR 263
+NL L +N + +IS GL LQ+
Sbjct: 132 NLTNLNRLELSSNTIS----DISALSGLTSLQQ 160
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 20/247 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ N S +L +L +L+ +N ++ +L+ L L LN +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLN----NNYV 92
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
+++TL A++ + ++ K++ N + +
Sbjct: 93 -QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 123 LRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
L + I V+ + + S L L+L+ I + + L+TLDLS N L
Sbjct: 149 LDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA- 204
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS-GPFPSWVTSNLQ 237
+ + + ++ L NN L + + S+NL++ DL N G + + N +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Query: 238 MNLVANN 244
+ VA
Sbjct: 264 VQTVAKQ 270
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 35/225 (15%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ V + ++ + + L N S ++ KLE L L+S
Sbjct: 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS------ 67
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
N+ + D + + L++L N L S++
Sbjct: 68 ---------NVLY----------ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIE 102
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
+L + N S + + ++ L N IT G +Q LDL N +
Sbjct: 103 TLHAA--NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Query: 182 IPRTLF-NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
L + +L +L L N + L+ +DLS N L+
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 39/255 (15%), Positives = 82/255 (32%), Gaps = 42/255 (16%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIG-NLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
++ N + +++ + + +++L L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDL------------------ 41
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131
S P + + +TKL+ L N L L++L +L ++ N
Sbjct: 42 ------SGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLN--NNY 91
Query: 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS 191
L ++ L N I+ + Q + + L+ N +T
Sbjct: 92 VQELL---VGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 192 LNYLFLGNNSLSGTLPTQ----KSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFT 246
+ YL L N + T+ S+ L++++L YN + V + L+ +L +N
Sbjct: 146 VQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204
Query: 247 FDRSNISVFPGLHCL 261
F G+ +
Sbjct: 205 FMGPEFQSAAGVTWI 219
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 40/220 (18%), Positives = 67/220 (30%), Gaps = 19/220 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + +N EL + L NNN S + + +YL +
Sbjct: 85 LDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLR 136
Query: 63 PSTYAKLRNMQTLWASDAPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
+Q L + + L+ L Q N + + A L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLK 194
Query: 122 SLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+L +S + + S +T +SLRN + I + QNL+ DL N
Sbjct: 195 TLDLSSNKLAFMGPEFQ---SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
Query: 180 GQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
R F+ + + ++ L Q E L
Sbjct: 251 CGTLRDFFS-KNQRVQTVAKQTVK-KLTGQNEEECTVPTL 288
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSEN 213
+I + ++ ++L + + ++ L L N LS +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59
Query: 214 LQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCLQ 262
L+ ++LS N L S L+ ++L N + ++
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNN-------YVQELLVGPSIE 102
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 51/255 (20%), Positives = 87/255 (34%), Gaps = 14/255 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFS--GTLPPEIGNLAKLEQLYLNSWGAGG 60
L++ N GS+ + L L+ L N S G L L L S+
Sbjct: 333 LTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNGAI 389
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
+ + + L +Q L + + KL L + + L S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 120 LDSLRISDIYNVSSSLDFVMS-LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
L++L+++ ++L V + NLT L L + L LQ L++S NNL
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS-----GPFPSW 231
+ SL+ L N + + ++L +L+ N ++ F W
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569
Query: 232 VTSNLQMNLVANNFT 246
V Q + T
Sbjct: 570 VKEQKQFLVNVEQMT 584
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-23
Identities = 45/298 (15%), Positives = 81/298 (27%), Gaps = 43/298 (14%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L ++ + L L+ L N P L LE L
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 63 PSTYAKLRNMQTLWASDAPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA--- 118
+L ++ L + K+P + N T L + N Q + L L
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
Query: 119 ------------------------SLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNAL 153
L L + +N S+ + + +L L L
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 154 ITGSI------PSGIGELQNLQT--LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGT 205
PS + L ++ L++ N + +++ + L S+
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Query: 206 LPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCLQ 262
K Q++ + L FP+ L+ + L N + L L
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLKSLTLTMNKGSI----SFKKVALPSLS 353
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 56/277 (20%), Positives = 87/277 (31%), Gaps = 23/277 (8%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN---SWGA 58
L+VAHN +P NL L + N ++ L + Q+ L+ S
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQG------PIP 111
I + + L + I + N L R F+ P
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGIGELQNLQ 169
S + L + Y S D V L N++ +SL I + Q
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHF-KWQ 310
Query: 170 TLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS---- 225
+L + L L L L L N S + +L +DLS N LS
Sbjct: 311 SLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367
Query: 226 GPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCL 261
+ T++L+ ++L N +N L L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 7e-22
Identities = 46/279 (16%), Positives = 78/279 (27%), Gaps = 23/279 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ ++ N N EL L L L L L
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLD 121
P +++ L +++ L A + IG LK L N +P+ S L +L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 122 SLRISDIYNV-----SSSLDFVMSLK-NLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
+ +S YN + L F+ L + I I + L L L
Sbjct: 157 HVDLS--YNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213
Query: 176 NNLTGQIPRTLF-NIGSLNYLFLGNNSLSG-----TLPTQKSENLQNIDLSYNHLSGPFP 229
N + I +T N+ L+ L E L ++ + L+
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 230 SWVT-------SNLQMNLVANNFTFDRSNISVFPGLHCL 261
+N+ +A ++ L
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL 312
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-19
Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 15/179 (8%)
Query: 86 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD---FVMSLK 142
+PD I + K++ N + S S + L L +S +++ + L
Sbjct: 26 VPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLS--RCEIETIEDKAW-HGLH 80
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
+L++L L I P L +L+ L L + + +L L + +N +
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 203 SG-TLPT--QKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSN--ISVFP 256
LP NL ++DLSYN++ L+ N + D S I
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLR-ENPQVNLSLDMSLNPIDFIQ 197
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 4e-18
Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 12/203 (5%)
Query: 70 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129
+ + + S P N+++L+ L + + L L +L ++
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 130 NVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG-QIPRTLFN 188
S S L +L +L + IG+L L+ L+++ N + ++P N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 189 IGSLNYLFLGNNSLSG------TLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM---N 239
+ +L ++ L N + + + ++D+S N + +++
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELT 210
Query: 240 LVANNFTFDRSNISVFPGLHCLQ 262
L N + + L L
Sbjct: 211 LRGNFNSSNIMKTC-LQNLAGLH 232
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 25/244 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+++N L L +N + + + L ++
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNL----- 197
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
ST A ++ L AS + +L L+ Q N+ + L L
Sbjct: 198 LSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 252
Query: 123 LRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+ +S YN + + ++ L L + N + ++ + L+ LDLS N+L
Sbjct: 253 VDLS--YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS-----GPFPSWVTSN 235
+ R L L+L +NS+ TL L+N+ LS+N F +
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367
Query: 236 LQMN 239
+
Sbjct: 368 VDDA 371
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 28/231 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L + N P N+ LTVL N+ S +LP I N KL L ++
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS----NNN 152
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117
+ T+ ++Q L S T + L N S+L+
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAIP 204
Query: 118 ASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
+++ L S +N + + LT L L++ +T + L +DLS+N
Sbjct: 205 IAVEELDAS--HNSINVVRG-PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE 259
Query: 178 LTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS 225
L +I F + L L++ NN L L Q L+ +DLS+NHL
Sbjct: 260 LE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 45/274 (16%), Positives = 100/274 (36%), Gaps = 37/274 (13%)
Query: 3 LSVAHNVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGG 60
++ ++ +P L + +++ +L+ + + +++LY+
Sbjct: 50 VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG----FN 103
Query: 61 EI----PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLS 115
I P + + + L + +P I N KL +L N+ + +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 116 KLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
SL +L++S N + +D + + +L ++ L++ + ++ LD S
Sbjct: 163 ATTSLQNLQLS--SNRLTHVDLSL-IPSLFHANVSYNLLS-----TLAIPIAVEELDASH 214
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS----GPFPSW 231
N++ + + L L L +N+L+ T L +DLSYN L PF
Sbjct: 215 NSIN-VVRGPVNV--ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK- 270
Query: 232 VTSNLQM-NLVANNFTFDRSNIS-VFPGLHCLQR 263
L+ + N ++ + L+
Sbjct: 271 -MQRLERLYISNNRLV----ALNLYGQPIPTLKV 299
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 35/201 (17%), Positives = 73/201 (36%), Gaps = 9/201 (4%)
Query: 29 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPD 88
+ + ++++ L N + + ++
Sbjct: 4 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 63
Query: 89 FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTD 146
+ ++ +++ L + + + ++ L + I + + F ++ LT
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQ-NVPLLTV 121
Query: 147 LSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSG 204
L L ++ S+P GI L TL +S NNL +I F SL L L +N L+
Sbjct: 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT- 178
Query: 205 TLPTQKSENLQNIDLSYNHLS 225
+ +L + ++SYN LS
Sbjct: 179 HVDLSLIPSLFHANVSYNLLS 199
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-23
Identities = 60/329 (18%), Positives = 101/329 (30%), Gaps = 51/329 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSG----------------TLPPEIGNLA 46
L V+ N + S+P L EL++ S + +LP L
Sbjct: 86 LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144
Query: 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSF 106
+L + N ++ S A + LWA + T +P L+ L N
Sbjct: 145 EL-SVSDN------QLASLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQL 193
Query: 107 QGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQ 166
+P+ S+L L + N +SL L +L + +T S+P
Sbjct: 194 AS-LPTLPSELYKLWAY-----NNRLTSLP--ALPSGLKELIVSGNRLT-SLPVLPS--- 241
Query: 167 NLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHL 224
L+ L +S N LT +P L L + N L+ LP + ++L N L
Sbjct: 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296
Query: 225 SGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGK 284
S + + + P + P
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD-- 354
Query: 285 QMRADNIVYEADNSSLSASSYAVTNTEKW 313
R E + + S ++ TE +
Sbjct: 355 --RWHMFGQEDNADAFSLFLDRLSETENF 381
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 58/248 (23%), Positives = 88/248 (35%), Gaps = 42/248 (16%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLE----QLYLNSWGA 58
L+V + + ++P L +T L +NN + +LP L LE QL
Sbjct: 45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT------ 94
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+P L + +P L L GN +P L
Sbjct: 95 --SLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLTS-LPVLPPGLQ 144
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
L +SD N +SL L L N +T S+P LQ L +S N L
Sbjct: 145 ELS---VSD--NQLASLP--ALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQL 193
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM 238
+P L L+ NN L+ +LP S L+ + +S N L+ P + ++
Sbjct: 194 A-SLPTL---PSELYKLWAYNNRLT-SLPALPS-GLKELIVSGNRLTS-LPVLPSELKEL 246
Query: 239 NLVANNFT 246
+ N T
Sbjct: 247 MVSGNRLT 254
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 25/191 (13%)
Query: 63 PSTYAKLRNMQTLWASDAPFT-----GKIPDFIGNW--TKLKSLRFQGNSFQGPIPSSLS 115
P A+ + + W AP + + L + +P L
Sbjct: 2 PVDPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCL- 59
Query: 116 KLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
A + +L I D N +SL L L + +T S+P L L
Sbjct: 60 -PAHITTLVIPD--NNLTSLPA--LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSN 235
+L L L++ N L+ +LP LQ + +S N L+ P+ +
Sbjct: 114 THLPALPS-------GLCKLWIFGNQLT-SLPVL-PPGLQELSVSDNQLAS-LPALPSEL 163
Query: 236 LQMNLVANNFT 246
++ N T
Sbjct: 164 CKLWAYNNQLT 174
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 59/306 (19%), Positives = 110/306 (35%), Gaps = 21/306 (6%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
LS+++N L L +N + + + L ++ +
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVS-----YNL 203
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
ST A ++ L AS + +L L+ Q N+ + L L
Sbjct: 204 LSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 258
Query: 123 LRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+ +S YN + + ++ L L + N + ++ + L+ LDLS N+L
Sbjct: 259 VDLS--YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 314
Query: 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240
+ R L L+L +NS+ TL L+N+ LS+N + N+
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373
Query: 241 VANNFTFDRSNISVFPGLHCLQRNFP-CNRNAPRYANFSIKCGGKQMRADNIVYEADNSS 299
V + + + + GL C + + P +R A S+ ++ + + NS
Sbjct: 374 VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSV 433
Query: 300 LSASSY 305
S S Y
Sbjct: 434 QSLSHY 439
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 8e-18
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 30/232 (12%)
Query: 3 LSVAHNVFSGSVPREL-GNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGG 60
L + N +P + N+ LTVL N+ S +LP I N KL L ++
Sbjct: 104 LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS----NN 157
Query: 61 EI----PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSK 116
+ T+ ++Q L S T + L N S+L+
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLL-----STLAI 209
Query: 117 LASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176
+++ L S +N + + LT L L++ +T + L +DLS+N
Sbjct: 210 PIAVEELDAS--HNSINVVRG-PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYN 264
Query: 177 NLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS 225
L +I F + L L++ NN L L Q L+ +DLS+NHL
Sbjct: 265 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 2e-16
Identities = 45/274 (16%), Positives = 99/274 (36%), Gaps = 37/274 (13%)
Query: 3 LSVAHNVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGG 60
++ ++ +P L + +++ +L+ + + +++LY+
Sbjct: 56 VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG----FN 109
Query: 61 EI----PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLS 115
I P + + + L + +P I N KL +L N+ + +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 116 KLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
SL +L++S N + +D + +L ++ L++ + ++ LD S
Sbjct: 169 ATTSLQNLQLS--SNRLTHVDL-SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 220
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS----GPFPSW 231
N++ + + L L L +N+L+ T L +DLSYN L PF
Sbjct: 221 NSIN-VVRGPVNV--ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK- 276
Query: 232 VTSNLQM-NLVANNFTFDRSNIS-VFPGLHCLQR 263
L+ + N ++ + L+
Sbjct: 277 -MQRLERLYISNNRLV----ALNLYGQPIPTLKV 305
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 9e-15
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 69 LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD- 127
L N + + ++ + ++ +++ L + + + ++ L +
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 128 -IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRT 185
I + + F ++ LT L L ++ S+P GI L TL +S NNL +I
Sbjct: 110 AIRYLPPHV-FQ-NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165
Query: 186 LF-NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
F SL L L +N L+ + +L + ++SYN LS
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLS 205
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
I S+L + I ++L N ++ +N+ + +P+ + + +
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+ L+L+ + +I F ++ L++G N++ LP Q L + L N L
Sbjct: 78 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135
Query: 225 S 225
S
Sbjct: 136 S 136
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 5e-22
Identities = 50/251 (19%), Positives = 81/251 (32%), Gaps = 36/251 (14%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+P E N+K T + + PP G ++ L R
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD-----------CLDRQA 73
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
L ++ + +P+ + L+SL NS +P L SL +
Sbjct: 74 HELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN--LKAL 126
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
S L L L + N + +P + L+ +D+ N+L ++P SL
Sbjct: 127 SDL-----PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD---LPPSL 175
Query: 193 NYLFLGNNSLSGTLPT-QKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSN 251
++ GNN L LP Q L I N L +L+ + NN
Sbjct: 176 EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNIL---EE 229
Query: 252 ISVFPGLHCLQ 262
+ L L
Sbjct: 230 LPELQNLPFLT 240
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-21
Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 61/277 (22%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ +N +P +L+ + GNN PE+ NL L +Y + +
Sbjct: 200 IYADNNSLK-KLPDLPLSLESIVA---GNNIL--EELPELQNLPFLTTIYAD----NNLL 249
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
+ +++ L D T +P+ + T L + +P +L L + S
Sbjct: 250 KTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYL-NASS 306
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQ---------------- 166
I + + +L +L++ N + +P+ L+
Sbjct: 307 NEIRSLCD---------LPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELP 356
Query: 167 -NLQTLDLSFNNLTGQIPRTLFN----------------IGSLNYLFLGNNSLSGTLPTQ 209
NL+ L + +N L + P + +L L + N L P
Sbjct: 357 QNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP-D 413
Query: 210 KSENLQNIDLSYNHLSGPFPSW--VTSNLQMNLVANN 244
E+++++ ++ + P+ T L+ ++ ++
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 9e-21
Identities = 48/252 (19%), Positives = 84/252 (33%), Gaps = 44/252 (17%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
S+P +L+ L N+ + LP +L L N + +
Sbjct: 85 SLPELPPHLESLVA---SCNSLT-ELPELPQSLKSLLVDNNN----LKALSD---LPPLL 133
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
+ L S+ K+P+ + N + LK + NS + +P L + + N
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIA---AGN--NQL 185
Query: 133 SSLDFVMSLKNLTDLSLRNALITG------------------SIPSGIGELQNLQTLDLS 174
L + +L LT + N + + L L T+
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 175 FNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTS 234
N L +P SL L + +N L+ LP ++L +D+S N SG +
Sbjct: 246 NNLLK-TLPDL---PPSLEALNVRDNYLT-DLPEL-PQSLTFLDVSENIFSG-LSELPPN 298
Query: 235 NLQMNLVANNFT 246
+N +N
Sbjct: 299 LYYLNASSNEIR 310
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 6e-20
Identities = 47/244 (19%), Positives = 92/244 (37%), Gaps = 31/244 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ V +N +P +L+ + GNN PE+ NL L +Y + +
Sbjct: 158 IDVDNNSLK-KLPDLPPSLEFIAA---GNNQL--EELPELQNLPFLTAIYAD----NNSL 207
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
+++++ A + ++P+ + N L ++ N + +P L +L+
Sbjct: 208 KKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNV 264
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
N + L ++LT L + + + + NL L+ S N + +
Sbjct: 265 R-----DNYLTDLP--ELPQSLTFLDVSENIFS-GLSELPP---NLYYLNASSNEIR-SL 312
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVA 242
SL L + NN L LP L+ + S+NHL+ P + Q+++
Sbjct: 313 CDLP---PSLEELNVSNNKLI-ELPAL-PPRLERLIASFNHLAE-VPELPQNLKQLHVEY 366
Query: 243 NNFT 246
N
Sbjct: 367 NPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 35/243 (14%), Positives = 76/243 (31%), Gaps = 51/243 (20%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ +N+ ++P +L+ L V +N+ LP +L L+ +
Sbjct: 242 IYADNNLLK-TLPDLPPSLEALNVR----DNYLTDLPELPQSLTFLDVSENIF----SGL 292
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD- 121
N+ L AS +I L+ L N +P+ +L L
Sbjct: 293 SEL---PPNLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIA 344
Query: 122 -SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQ-------------- 166
++++ +NL L + + P ++
Sbjct: 345 SFNHLAEVPE---------LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPEL 394
Query: 167 --NLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPTQKSENLQNIDLSYN 222
NL+ L + N L + P S+ L + + + + ++ L++ ++
Sbjct: 395 PQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
Query: 223 HLS 225
H
Sbjct: 451 HHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 4e-14
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 46/188 (24%)
Query: 38 LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK 97
+ P + L++ +S N+ + P N
Sbjct: 3 INPRNVSNTFLQEPLRHS--------------SNLTEM-----------PVEAENVKSKT 37
Query: 98 SLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS 157
+ ++ P + + R+ D + +L L N ++ S
Sbjct: 38 EYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAHELELNNLGLS-S 85
Query: 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNI 217
+P +L++L S N+LT ++P ++ SL +LS LP L+ +
Sbjct: 86 LPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-LP----PLLEYL 136
Query: 218 DLSYNHLS 225
+S N L
Sbjct: 137 GVSNNQLE 144
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE----- 212
I LQ +NLT ++P N+ S + + P E
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 213 ----------NLQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFT 246
++L+ LS P +L+ + N+ T
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLS-SLPELPP-HLESLVASCNSLT 104
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 54/292 (18%), Positives = 93/292 (31%), Gaps = 26/292 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L++A+N + L L VL+ N L L K+ + L
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 62 IPSTYAKLRNMQTLWASDAPFTG---------------KIPDFIGNWTKLKSLRFQGNSF 106
T+ L +QTL D T K+ + N
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 107 QG-PIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG 163
+ I L ++ L L ++ + S +L L L ++ + + +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-NPSLEQLFLGENMLQLAWETELC 472
Query: 164 E-----LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID 218
L +LQ L L+ N L P ++ +L L L +N L+ NL+ +D
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILD 532
Query: 219 LSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQRNFPCNRN 270
+S N L P P S +++ N F + + L+
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPA 584
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 3e-18
Identities = 61/297 (20%), Positives = 102/297 (34%), Gaps = 45/297 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L ++ N L++L +L G+ T+ E NL L L L S +
Sbjct: 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS----SK 84
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKI--PDFIGNWTKLKSLRFQGNSFQG-PIPSSL 114
I P + L ++ L + + + N L L N + + S
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 115 SKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQN----- 167
KL SL S+ S I+ V + K L+ SL + + G+ N
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 168 -LQTLDLSFNNLTGQIPRTLFNIGS------------LNYLFLGNNSLS----GTLPTQK 210
L+ LD+S N T I N S + G +++ T
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264
Query: 211 SENLQNIDLSYNHLS----GPFPSWVTSNLQM-NLVANNFTFDRSNISVFPGLHCLQ 262
+++++DLS+ + F + +L++ NL N + F GL LQ
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKIN--KIADEAFYGLDNLQ 317
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-17
Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 34/261 (13%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
VP+ L L N L +L+ L L S I
Sbjct: 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID--------- 65
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IYN 130
+ N L+ L + P + L L LR+ + +
Sbjct: 66 --------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111
Query: 131 VSSSLDFVMSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNI 189
+ +LK LT L L +N + + + G+L +L+++D S N + L +
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 190 G--SLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
+L++ L NSL + + +N+ L +SG + + N ++ +
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231
Query: 245 FTFDRSNISVFPGLHCLQRNF 265
F G N
Sbjct: 232 QAFSLILAHHIMGAGFGFHNI 252
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 29/283 (10%)
Query: 3 LSVAHNVFSGSVPRELGNL--KELTVLSFGNNNFSGTLPPEIGNLAK------LEQLYLN 54
+ + N EL L K L+ S N+ + + G LE L ++
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212
Query: 55 SWGAGGEIPSTYAK------------LRNMQTLWASDAPFTGKIPDFIGNWTK--LKSLR 100
G +I ++ ++ + + ++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 101 FQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160
L L L ++ + + L NL L+L L+ + S
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS 331
Query: 161 GI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 219
L + +DL N++ +T + L L L +N+L+ T+ ++ +I L
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF--IPSIPDIFL 388
Query: 220 SYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
S N L P + ++L N + + + LQ
Sbjct: 389 SGNKLVT-LPKINLTANLIHLSENRLE-NLDILYFLLRVPHLQ 429
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 54/279 (19%), Positives = 90/279 (32%), Gaps = 33/279 (11%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAK--LEQLYLNSWGAG 59
+ N S S L + FG +N LA+ + L L+
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS----H 275
Query: 60 GEI----PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS 115
G + + L++++ L + + L+ L N S+
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
Query: 116 KLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDL 173
L + + + I + F L+ L L LR+ +T I + ++ + L
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQT-FKF-LEKLQTLDLRDNALT-----TIHFIPSIPDIFL 388
Query: 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG---TLPTQKSENLQNIDLSYNHLSGP--- 227
S N L +P+ + N + L N L + +LQ + L+ N S
Sbjct: 389 SGNKLV-TLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 228 -FPSWVTSNLQMNLVANNFTFDRS---NISVFPGLHCLQ 262
PS S Q+ L N VF GL LQ
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 14/128 (10%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNS 201
+ N +T +P L + L LSFN + + + F + L L LG+
Sbjct: 7 RIAFYRFCN--LT-QVPQV---LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQY 59
Query: 202 LSGTLPT---QKSENLQNIDLSYNHLSGPFPSWV--TSNLQM-NLVANNFTFDRSNISVF 255
T+ + NL+ +DL + + P +L L + F
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 256 PGLHCLQR 263
L L R
Sbjct: 120 RNLKALTR 127
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 7e-22
Identities = 45/264 (17%), Positives = 83/264 (31%), Gaps = 37/264 (14%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ V + ++ + + L N S ++ KLE L L+S
Sbjct: 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS------ 67
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
N+ + D + + L++L N L S++
Sbjct: 68 ---------NVLY----------ETLDL-ESLSTLRTLDLNNNYV-----QELLVGPSIE 102
Query: 122 SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181
+L + N S + + ++ L N IT G +Q LDL N +
Sbjct: 103 TLHAA--NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Query: 182 IPRTLF-NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-SNLQM- 238
L + +L +L L N + L+ +DLS N L+ P + + + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219
Query: 239 NLVANNFTFDRSNISVFPGLHCLQ 262
+L N + L
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFD 243
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 40/254 (15%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
++ N + +++ L + +++L L+ N
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG---------------NP 45
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
+ + +TKL+ L N L L++L +L ++ N
Sbjct: 46 ---------LSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLN--NNYV 92
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
L ++ L N I+ + Q + + L+ N +T +
Sbjct: 93 QELL---VGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 193 NYLFLGNNSLSGTLPT----QKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTF 247
YL L N + T+ S+ L++++L YN + V + L+ +L +N F
Sbjct: 147 QYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205
Query: 248 DRSNISVFPGLHCL 261
G+ +
Sbjct: 206 MGPEFQSAAGVTWI 219
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-18
Identities = 36/253 (14%), Positives = 68/253 (26%), Gaps = 18/253 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + +N EL + L NNN S + + +YL +
Sbjct: 85 LDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLR 136
Query: 63 PSTYAKLRNMQTLWASDAPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLD 121
+Q L + + L+ L Q N + + A L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLK 194
Query: 122 SLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+L +S + + S +T +SLRN + I + QNL+ DL N
Sbjct: 195 TLDLSSNKLAFMGPEFQ---SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
Query: 180 GQIPRTLF-NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM 238
R F + + ++ + + +
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 239 NLVANNFTFDRSN 251
+ + +
Sbjct: 311 KRKEHALLSGQGS 323
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 26/243 (10%), Positives = 61/243 (25%), Gaps = 26/243 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN----SWGA 58
L++ +N V ++ +L L +N + + PE + A + + L
Sbjct: 174 LNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV--- 227
Query: 59 GGEIPSTYAKLRNMQTLWASDAPF-TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117
I +N++ F G + DF +++++ + + + +
Sbjct: 228 --LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEEC 283
Query: 118 ASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDL 173
F L L GS + + +D
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343
Query: 174 SFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSG--TLPTQKSENLQNI---DLSYNHLSGP 227
+ + + L +L + + L + L
Sbjct: 344 LKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402
Query: 228 FPS 230
Sbjct: 403 TEE 405
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 1e-21
Identities = 54/258 (20%), Positives = 84/258 (32%), Gaps = 35/258 (13%)
Query: 3 LSVAHNVFSGSVPR---ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAG 59
L+V + + + L L+ N +GT PP + + LN
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN----- 127
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
LRN+ WA+ + ++ ++ LK L + +
Sbjct: 128 ---------LRNVS--WATRDAWLAELQQWLK--PGLKVLSIAQAHSLNFSCEQVRVFPA 174
Query: 120 LDSLRISDIYNVSSSLDFVM------SLKNLTDLSLRN---ALITGSIPSGIGELQNLQT 170
L +L +SD N ++ L L+LRN +G + LQ
Sbjct: 175 LSTLDLSD--NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232
Query: 171 LDLSFNNLTGQIPRTLFNI-GSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP 229
LDLS N+L + LN L L L +P L +DLSYN L
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPS 291
Query: 230 SWVTSNLQM-NLVANNFT 246
+ +L N F
Sbjct: 292 PDELPQVGNLSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 9e-17
Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 25/186 (13%)
Query: 92 NWTKLKSLRFQGNSFQGPIPSSLSKLA--SLDSLRISDI----YNVSSSLDFVMSLKNLT 145
+ L+ L + G P L + L+ L + ++ + + L
Sbjct: 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 146 DLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI-------PRTLFNIGSLNYLFLG 198
LS+ A + L TLDLS N G+ P + L G
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 199 NNSLSGTLP--TQKSENLQNIDLSYNHLSGPFP----SWVTSNLQMNLVANNFTFDRSNI 252
+ SG LQ +DLS+N L W + +NL
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------ 266
Query: 253 SVFPGL 258
V GL
Sbjct: 267 QVPKGL 272
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 3e-21
Identities = 43/248 (17%), Positives = 82/248 (33%), Gaps = 30/248 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + S S+P L ++TVL N +LP +L L+ N +
Sbjct: 64 LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD-ACDNRL---STL 115
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
P +++ L + T +P+ L+ + N +P + L L
Sbjct: 116 PEL---PASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLTM-LPELPTSLEVLS- 166
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT----LDLSFNNL 178
+R N + L ++L L + L+ S+P+ + + N +
Sbjct: 167 VR----NNQLTFLP--ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM 238
T IP + ++ + L +N LS + + + S N
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 239 NLVANNFT 246
+A+ T
Sbjct: 278 RPLADAVT 285
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 87 PDFIGNWTKLKSLRFQGNSF----QGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLK 142
D+ W K + G + +++ + L L ++ ++ +L
Sbjct: 27 ADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQ-LNRLNLSSLPDNL-----PP 80
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
+T L + + S+P +L+ LD N L+ +P SL +L + NN L
Sbjct: 81 QITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPEL---PASLKHLDVDNNQL 132
Query: 203 SGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFT 246
+ LP + L+ I+ N L+ P TS +++ N T
Sbjct: 133 T-MLPELPA-LLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT 173
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNI----GSLNYLFLGNNSLSGTLPTQKSE 212
SI I +L + + +N ++ F+ N L
Sbjct: 2 SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59
Query: 213 NLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFT 246
+ L+ +LS P + + + + N
Sbjct: 60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALI 93
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 1e-20
Identities = 45/269 (16%), Positives = 80/269 (29%), Gaps = 23/269 (8%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
+P L L N + +L+ L L+ Y L ++
Sbjct: 21 KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IYN 130
TL + P + L+ L + + L +L L ++ I +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 131 VSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQ----TLDLSFNNLTGQIPRTL 186
F +L NL L L + I + + L + +LDLS N + I
Sbjct: 139 FKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA 196
Query: 187 FNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS-------------GPFPSWVT 233
F L+ L L NN S + + L +++ L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 234 SNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
++ +A + I +F L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-19
Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 19/265 (7%)
Query: 8 NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA 67
+ + + L ++ S + + N + L L G+ P+
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLEL-VNCKFGQFPTL-- 322
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPSSLSKLASLDSLRI 125
KL++++ L + + L+ L N SF+G S SL L +
Sbjct: 323 KLKSLKRLTFTSNKGG-NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 126 SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPR 184
S ++ S +F + L+ L L +++ + + L+NL LD+S +
Sbjct: 381 SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 185 TLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVT--SNLQ-M 238
+ SL L + NS + NL +DLS L P+ S+LQ +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 239 NLVANNFTFDRSNISVFPGLHCLQR 263
N+ +N +F L LQ+
Sbjct: 500 NMASNQLKS--VPDGIFDRLTSLQK 522
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 55/234 (23%), Positives = 85/234 (36%), Gaps = 23/234 (9%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAGGEIPSTYAKLRNMQTLWA 77
LK L L+F +N +L LE L L N G + +++ L
Sbjct: 323 KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYNVSSSL- 135
S + +L+ L FQ ++ + S L +L L IS + +
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS--HTHTRVAF 437
Query: 136 -DFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSL 192
L +L L + + I EL+NL LDLS L Q+ T F ++ SL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 496
Query: 193 NYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS------GPFPSWVTSNLQ 237
L + +N L ++P + +LQ I L N W+ N Q
Sbjct: 497 QVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 46/299 (15%), Positives = 89/299 (29%), Gaps = 44/299 (14%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L ++ +L L+ L N +L L+ L++L
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 115
Query: 62 IPSTYAKLRNMQTLWASDAPFT-GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120
L+ ++ L + K+P++ N T L+ L N Q + L L +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 121 DSLRISDI--YNVSSSLD-FVMSLKNLTDLSLRNALITGSIPSG-IGELQNLQTLDL--- 173
L +S N + + L L+LRN + ++ I L L+ L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 174 ---SFNNLTG---------------------------QIPRTLFNIGSLNYLFLGNNSLS 203
+ NL I + +++ L + ++
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 204 GTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
+ Q+++L FP+ +L+ +N N L L+
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKG---GNAFSEVDLPSLE 350
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 6e-14
Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 17/195 (8%)
Query: 3 LSVAHN--VFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGA 58
L ++ N F G + L L N T+ L +LE L ++
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK- 409
Query: 59 GGEIPSTYA--KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLS 115
++ LRN+ L S + L+ L+ GNSFQ +
Sbjct: 410 --QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 116 KLASLDSLRISDIYNVSSSL--DFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLD 172
+L +L L +S L SL +L L++ + + S+P GI L +LQ +
Sbjct: 468 ELRNLTFLDLS--QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIW 524
Query: 173 LSFNNLTGQIPRTLF 187
L N PR +
Sbjct: 525 LHTNPWDCSCPRIDY 539
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 15/169 (8%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQ 169
+P S L L + + + S S L L L I L +L
Sbjct: 26 LPFSTKNL-DLSFNPLRHLGSYSFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 170 TLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL-S 225
TL L+ N + + SL L +L+ +L + L+ +++++N + S
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138
Query: 226 GPFPSWVT--SNLQ-MNLVANNFT-FDRSNISVFPGLHCLQRNFPCNRN 270
P + + +NL+ ++L +N +++ V + L + + N
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 37/252 (14%), Positives = 86/252 (34%), Gaps = 13/252 (5%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLW 76
E + + F + + +L++ + ++ + Y+ L ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ---GPIPSSLSKLASLDSLRISD--IYNV 131
++ F + L+ L N + SL +L +S + ++
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS 191
+ + +++LKNLT L + +P + ++ L+LS + + + +
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--T 432
Query: 192 LNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFT-FDR 249
L L + NN+L + LQ + +S N L + + L M + N
Sbjct: 433 LEVLDVSNNNLD-SFSLF-LPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490
Query: 250 SNISVFPGLHCL 261
L +
Sbjct: 491 GIFDRLTSLQKI 502
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 29/253 (11%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNS---WGAG 59
L + + L+++ ++ N+ +L LE L L+
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 60 GEIPSTYAKLRNMQTLWASDAPFT--GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117
+ + ++QTL S K + + L SL N+F P+P S
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409
Query: 118 ASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSF 175
+ L +S I V + + + L L + N + S L LQ L +S
Sbjct: 410 EKMRFLNLSSTGIRVVKTCI-----PQTLEVLDVSNNNLD-SFSLF---LPRLQELYISR 460
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS------G 226
N L +P L + + N L ++P + +LQ I L N
Sbjct: 461 NKLK-TLPDASL-FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517
Query: 227 PFPSWVTSNLQMN 239
W+ N Q
Sbjct: 518 YLSRWLNKNSQKE 530
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 13/265 (4%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-STYAKLRN 71
S+P L + L N + ++ A L+ L L I + L +
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLIL-KSSRINTIEGDAFYSLGS 75
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYN 130
++ L SD + + G + LK L GN +Q + S L +L +LRI +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN-VE 134
Query: 131 VSSSLDFVM--SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN 188
S + + L +L +L ++ + + ++++ L L + +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 189 IGSLNYLFLGNNSL-----SGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVAN 243
+ S+ YL L + +L S + S ++ + + L+ + + L+ L +
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 244 NFTFDRSNISVFPGLHCLQRNFPCN 268
FD ++ + + +
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSE 279
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 29/261 (11%)
Query: 3 LSVAHNVFSGSVPRE-LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
L + + + R L L L + + ++ + L L+ +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 62 IPSTYAKLRNMQTLWASD--------APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 113
+ L +++ L D +P + SF +
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN-ELLKL 246
Query: 114 LSKLASLDSLRISDI------YNVSSSLDFVMSLKNLTDLSLRNALITG----SIPSGI- 162
L + L + D S D V L + +++R I S +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 163 GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPTQKSE-----NLQN 216
L+ ++ + + + + +P + ++ SL +L L N + + +LQ
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 217 IDLSYNHLSG-PFPSWVTSNL 236
+ LS NHL + L
Sbjct: 366 LVLSQNHLRSMQKTGEILLTL 386
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 42/287 (14%), Positives = 95/287 (33%), Gaps = 31/287 (10%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPE-IGNLAKLEQLYL--NSWGAG 59
L + + + +L L L +N+ S +L G L+ L+ L L N +
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY-QT 112
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+ S + L N+QTL + +I T L L + S + SL +
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
+ L + + F L ++ L LR+ + S + + +
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 179 T-------GQIPRTLFNIGSLNYLFLGNNSLSGT-------------LPTQKSENLQNID 218
+ ++ + L I L+ + + +L+G L ++ ++ +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 219 LSYNHLSGPFPSWVT--SNLQ-MNLVANNFTFDRSNISVFPGLHCLQ 262
+ +L + + ++ + + + + L L+
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS--FSQHLKSLE 337
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 9e-20
Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 22/235 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L + N E + L L N S + P NL L L L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR----SNR 91
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSK 116
+ + L N+ L S+ + D++ + LKSL N + S
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 117 LASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDL 173
L SL+ L + + ++ + L L L LR+ I +I L L+ L++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207
Query: 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS 225
S + +L L + + +L+ +P + L+ ++LSYN +S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 7e-17
Identities = 51/237 (21%), Positives = 77/237 (32%), Gaps = 25/237 (10%)
Query: 15 PRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPS-TYAKLRNM 72
+L L L G+N+ + L LEQL L IP+ + L +
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGL 178
Query: 73 QTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--I 128
L I D F +LK L + + + +L SL I+ +
Sbjct: 179 IVLRLRHLNIN-AIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 129 YNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF 187
V V L L L+L I+ +I + EL LQ + L L + F
Sbjct: 237 TAVPYLA--VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAF 292
Query: 188 -NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS-----GPFPSWVTSN 235
+ L L + N L+ TL NL+ + L N L+
Sbjct: 293 RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 52/225 (23%), Positives = 83/225 (36%), Gaps = 24/225 (10%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI----PSTYAK 68
+VP + E +L G N E + LE+L LN + P +
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE----NIVSAVEPGAFNN 78
Query: 69 LRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126
L N++TL IP F G + L L N + L +L SL +
Sbjct: 79 LFNLRTLGLRSNRLK-LIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136
Query: 127 D--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIP 183
D + +S F L +L L+L +T SIP+ L L L L N+ I
Sbjct: 137 DNDLVYISHRA-FS-GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIR 192
Query: 184 RTLF-NIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLS 225
F + L L + + T+ NL ++ +++ +L+
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNS 201
L L I +L+ L+L+ N ++ + F N+ +L L L +N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91
Query: 202 LSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVT--SNLQM-NLVANNFTFDRSNISVF 255
L +P NL +D+S N + NL+ + N+ + F
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR--AF 148
Query: 256 PGLHCLQR 263
GL+ L++
Sbjct: 149 SGLNSLEQ 156
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 15/115 (13%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSEN 213
++P GI + LDL N + + L L L N +S + N
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81
Query: 214 LQNIDLSYNHLS----GPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCLQR 263
L+ + L N L G F SNL +++ N +F L+ L+
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTG--LSNLTKLDISENKIVILLDY--MFQDLYNLKS 132
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 50/261 (19%), Positives = 93/261 (35%), Gaps = 23/261 (8%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNN--FSGTLPPEIGNLAKLEQLYLNSWGAGG 60
L + N L +LT LS +N F G L+ L L S+
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVI 91
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPD---FIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117
+ S + L ++ L + ++ + F+ L L + + L
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGL 149
Query: 118 ASLDSLRISDIYNVSSSLDFVMS-LKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSF 175
+SL+ L+++ + L + + L+NLT L L + + L +LQ L++S
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208
Query: 176 NNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPTQK----SENLQNIDLSYNHLS----- 225
NN + + + SL L N + T Q+ +L ++L+ N +
Sbjct: 209 NNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEH 266
Query: 226 GPFPSWVTSNLQMNLVANNFT 246
F W+ Q+ +
Sbjct: 267 QSFLQWIKDQRQLLVEVERME 287
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Query: 92 NWTKLKSLRFQGN--SFQGPIPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDL 147
T+L L N SF+G S SL L +S + +SS+ L+ L L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---GLEQLEHL 106
Query: 148 SLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGT 205
+++ + + L+NL LD+S + +F + SL L + NS
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 206 LPT---QKSENLQNIDLSYNHLS----GPFPSWVTSNLQM-NLVANNFTFDRSNISVFPG 257
+ NL +DLS L F S S+LQ+ N+ NNF + +
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLDTF--PYKC 221
Query: 258 LHCLQR 263
L+ LQ
Sbjct: 222 LNSLQV 227
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
+ T++ + +T S+P+GI + L+L N L + L L L +N L
Sbjct: 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 203 SGTLPTQKS----ENLQNIDLSYNH---LSGPFPSWVTSNLQ-MNLVANNFTFDRSNISV 254
S +S +L+ +DLS+N +S F L+ ++ +N S SV
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLK-QMSEFSV 121
Query: 255 FPGLHCLQR 263
F L L
Sbjct: 122 FLSLRNLIY 130
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 1e-18
Identities = 49/260 (18%), Positives = 86/260 (33%), Gaps = 32/260 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L++ N +L L VL G N+ + LA L L L
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD----NW 134
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF----QGNSFQGPIPSS 113
+ + L ++ LW + P IP + ++ SL + + +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPS--YAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 114 LSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG-IGELQNLQTLD 172
L +L L + + + L L +L + I G L +L+ L
Sbjct: 192 FEGLFNLKYLNLGM--CNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLW 248
Query: 173 LSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS--- 225
+ + ++ I R F + SL L L +N+LS +LP L + L +N +
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDC 306
Query: 226 --GPFPSWVTSNLQMNLVAN 243
W+ + N
Sbjct: 307 DILWLAWWLREYIPTNSTCC 326
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 27/226 (11%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEI----PSTYA 67
VP+ + L+ NN + + +L LE L L I +
Sbjct: 68 EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR----NSIRQIEVGAFN 120
Query: 68 KLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRI 125
L ++ TL D T IP F +KL+ L + N + + +++ SL L +
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 126 SDIYNVSSSLD---FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
+ + F L NL L+L I +P+ L L+ L++S N+
Sbjct: 179 GE-LKKLEYISEGAFE-GLFNLKYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHFPEIR 234
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS 225
P + + SL L++ N+ +S + +L ++L++N+LS
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 1e-18
Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 18/229 (7%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI--PSTYAKLRNMQTL 75
+L +T LS + T+ + L L L L +I + L + L
Sbjct: 37 QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD----NQITDLAPLKNLTKITEL 90
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL 135
S P + +K+L P L+ L++L L + N +++
Sbjct: 91 ELSGNPLK-NVSAI-AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL--NQITNI 144
Query: 136 DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYL 195
+ L NL LS+ NA ++ + + + L L TL N ++ I L ++ +L +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEV 200
Query: 196 FLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
L NN +S P + NL + L+ ++ + + + N+V
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 56/227 (24%), Positives = 89/227 (39%), Gaps = 14/227 (6%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L ++ G +N + T+ +L + L G G L N+ L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAF--GTGVTTIEGVQYLNNLIGLEL 70
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
D T + N TK+ L GN + S+++ L S+ +L ++ + +
Sbjct: 71 KDNQIT-DLAPL-KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLT--STQITDVTP 124
Query: 138 VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFL 197
+ L NL L L IT +I S + L NLQ L + ++ P L N+ L L
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180
Query: 198 GNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
+N +S P NL + L N +S P TSNL + + N
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 16/233 (6%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L NL ++T L N + I L ++ L L S P A L N+Q L+
Sbjct: 81 LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYL 136
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
T I + T L+ L + L+ L+ L +L+ D N S +
Sbjct: 137 DLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD--NKISDISP 190
Query: 138 VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFL 197
+ SL NL ++ L+N I+ + S + NL + L+ +T Q N+ N +
Sbjct: 191 LASLPNLIEVHLKNNQIS-DV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV--V 246
Query: 198 GNNSLSGTLPTQKSEN--LQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 248
S + P S+N + +L++N S T N + F
Sbjct: 247 KGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFS 299
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 38/141 (26%)
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
I+ I+ + L N ++ + +T +L + TL +T
Sbjct: 8 AINVIFPDPA-------LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---- 54
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVA 242
I + YL NL ++L N ++ P + + L
Sbjct: 55 ----TIEGVQYL----------------NNLIGLELKDNQITDLAPLKNLTKITELELSG 94
Query: 243 NNFTFDRSNISVFPGLHCLQR 263
N N+S GL ++
Sbjct: 95 NPLK----NVSAIAGLQSIKT 111
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-18
Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 8/183 (4%)
Query: 44 NLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103
L T A++ ++ + ++ T + I +K L
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75
Query: 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG 163
+ +S L++L+ LRI S + + L +LT L + ++ SI + I
Sbjct: 76 IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 164 ELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH 223
L + ++DLS+N I L + L L + + + + L +
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192
Query: 224 LSG 226
+ G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-17
Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 33/187 (17%)
Query: 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWAS 78
+ LT ++ N N + L I ++ L +N N
Sbjct: 41 AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTIN-----------NIHATNY------ 81
Query: 79 DAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFV 138
+ I + L+ LR G +LS L SL L IS + S L +
Sbjct: 82 ---------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132
Query: 139 MSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFL 197
+L + + L N IT + L L++L++ F+ + + + LN L+
Sbjct: 133 NTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188
Query: 198 GNNSLSG 204
+ ++ G
Sbjct: 189 FSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-11
Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 51/163 (31%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
+ L L L + + P + L L L +
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI------------------------ 119
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
S + I I K+ S+ N I+DI +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNG------------------AITDIMPLK----- 156
Query: 138 VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180
+L L L+++ + GI + L L + G
Sbjct: 157 --TLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/129 (12%), Positives = 46/129 (35%), Gaps = 16/129 (12%)
Query: 140 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIG---SLNYLF 196
+ K + L + + ++ +L + L+ N+T L I ++ L
Sbjct: 21 TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVT-----DLTGIEYAHNIKDLT 72
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT--SNLQM-NLVANNFTFDRSNIS 253
+ N + P NL+ + + ++ ++ ++L + ++ + S ++
Sbjct: 73 INNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD--SILT 130
Query: 254 VFPGLHCLQ 262
L +
Sbjct: 131 KINTLPKVN 139
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 27/234 (11%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L++ N +L+ L +L N+ T+ LA L L L
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD----NR 123
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF----QGNSFQGPIPSS 113
+ + L ++ LW + P IP + ++ SLR + +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 114 LSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLD 172
L++L L ++ + + L L +L L ++ +I G L +LQ L
Sbjct: 181 FEGLSNLRYLNLAM--CNLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLW 237
Query: 173 LSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYN 222
+ + + I R F N+ SL + L +N+L+ LP +L+ I L +N
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
N L+L I I L++L+ L LS N++ I F + +LN L L +N
Sbjct: 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 201 SLSGTLPT---QKSENLQNIDLSYNHLS 225
L+ T+P L+ + L N +
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE 149
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 19/210 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
+ + N S + LT+L +N + + LA LEQL L+
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 62 IPS-TYAKLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPS-SLSKL 117
+ T+ L + TL ++ F G L+ L Q N+ Q +P + L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL-AALQYLYLQDNALQA-LPDDTFRDL 152
Query: 118 ASLDSLRISDIYNVSSSLD---FVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDL 173
+L L + N SS+ F L +L L L + + +L L TL L
Sbjct: 153 GNLTHLFLH--GNRISSVPERAFR-GLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208
Query: 174 SFNNLTGQIPRTLF-NIGSLNYLFLGNNSL 202
NNL+ +P + +L YL L +N
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
+ L I+ +P+ +NL L L N L + L L L +N+
Sbjct: 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 202 LSGTLPT---QKSENLQNIDLSYNHLS 225
++ L + L L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ 118
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 4e-17
Identities = 43/210 (20%), Positives = 74/210 (35%), Gaps = 23/210 (10%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS-TYAKLRNMQTL 75
+L LT L+ +N + L + L KL L + ++ ++ + L
Sbjct: 80 DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCD----TNKLTKLDVSQNPLLTYL 132
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL 135
+ T +I + + T+L L N + ++ L +L S +N + L
Sbjct: 133 NCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS--FNKITEL 185
Query: 136 DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYL 195
D K L L+ IT + + + L LD S N LT +I + + L Y
Sbjct: 186 DVS-QNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYF 238
Query: 196 FLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
N L+ L L + L
Sbjct: 239 DCSVNPLT-ELDVSTLSKLTTLHCIQTDLL 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 6e-16
Identities = 44/209 (21%), Positives = 73/209 (34%), Gaps = 22/209 (10%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS-TYAKLRNMQTLW 76
L LT L N++ + I L L +L I + ++ N+ L
Sbjct: 38 EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICT----SNNITTLDLSQNTNLTYLA 91
Query: 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD 136
T + + TKL L N +S+ L L + N + +D
Sbjct: 92 CDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCA--RNTLTEID 143
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
LT+L + + L TLD SFN +T ++ + LN L
Sbjct: 144 VS-HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLN 197
Query: 197 LGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
N+++ L ++ L +D S N L+
Sbjct: 198 CDTNNIT-KLDLNQNIQLTFLDCSSNKLT 225
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 20/206 (9%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
N +F T LA L L + + + KL + L +
Sbjct: 19 NFASEVAAAFEMQA---TDTISEEQLATLTSLDCH--NSSITDMTGIEKLTGLTKLICTS 73
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM 139
T + + T L L N + ++ L L L N + LD
Sbjct: 74 NNIT-TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCD--TNKLTKLDV-S 124
Query: 140 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199
LT L+ +T I + L LD N ++ + L L
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179
Query: 200 NSLSGTLPTQKSENLQNIDLSYNHLS 225
N ++ L +++ L ++ N+++
Sbjct: 180 NKIT-ELDVSQNKLLNRLNCDTNNIT 204
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 43/238 (18%), Positives = 75/238 (31%), Gaps = 23/238 (9%)
Query: 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLW 76
++ L +LT N + L + L+KL L+ EI T +
Sbjct: 228 DVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQ-TDLLEIDLT--HNTQLIYFQ 281
Query: 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD 136
A ++ + + T+L L Q LS+ L L +++ + LD
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNN--TELTELD 334
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
L LS NA I S +G++ L + +P+ SL
Sbjct: 335 VS-HNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390
Query: 197 LGNN-SLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNIS 253
+ G + + D + N + +W + V FT + I
Sbjct: 391 SPDLLDQFGNPMNIEPGDGGVYDQATNTI-----TWENLSTDNPAVTYTFTSENGAIV 443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 14/180 (7%)
Query: 46 AKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNS 105
++ + +L + +L ++ T + I T L L N+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 106 FQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGEL 165
+ LS+ +L L N ++LD L LT L+ +T + + +
Sbjct: 76 ITT-LD--LSQNTNLTYLACDS--NKLTNLDVT-PLTKLTYLNCDTNKLT-KLD--VSQN 126
Query: 166 QNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
L L+ + N LT +I + + L L N L L +D S+N ++
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 15/159 (9%)
Query: 90 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDI-YNVSSSLDFVMSLKNLTDLS 148
L SL +S + ++ + L L N ++LD NLT L+
Sbjct: 38 EEQLATLTSLDCHNSSI-----TDMTGIEKLTGLTKLICTSNNITTLDLS-QNTNLTYLA 91
Query: 149 LRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT 208
+ +T ++ + L L L+ N LT ++ + L YL N+L+ +
Sbjct: 92 CDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EIDV 144
Query: 209 QKSENLQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFT 246
+ L +D N + L ++ N T
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 115 SKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLS 174
AS + + S + L LT L N+ IT + GI +L L L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEE---QLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICT 72
Query: 175 FNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTS 234
NN+T + L +L YL +N L+ L L ++ N L+ S
Sbjct: 73 SNNIT-TLD--LSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKLDVSQNPL 128
Query: 235 NLQMNLVANNFT 246
+N N T
Sbjct: 129 LTYLNCARNTLT 140
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 4e-17
Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 10/206 (4%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 61
+ V +VF + + +F + ++ L ++
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339
Query: 62 IPSTYAKLRNMQTLWASDAPFTGKIPDFIG---NWTKLKSLRFQGNSFQ-GPIPSSLSKL 117
+ L ++TL ++ L+ L NS S
Sbjct: 340 VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 118 ASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
SL SL +S N+ + F + L L + I SIP + +L+ LQ L+++ N
Sbjct: 399 KSLLSLNMS--SNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455
Query: 178 LTGQIPRTLF-NIGSLNYLFLGNNSL 202
L +P +F + SL ++L N
Sbjct: 456 LK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 4e-16
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 10/209 (4%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
+LK L++ ++ F + + G +K+ L S+
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQ--GPIPSSLSKLASLDSLRISD-IYNVSSSLD 136
T + + G+ T+L++L Q N + I +++ SL L IS +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
K+L L++ + ++T +I + ++ LDL N + IP+ + + +L L
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 197 LGNNSLSGTLPT---QKSENLQNIDLSYN 222
+ +N L ++P + +LQ I L N
Sbjct: 451 VASNQLK-SVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 45/259 (17%), Positives = 95/259 (36%), Gaps = 19/259 (7%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN----SW 56
+ EL N+K + L ++ ++ ++ KL L LN +W
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCV--LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234
Query: 57 GAGGEIPSTYAKLRNMQTLWASDAPFTGKIP--DFIGNWTKLKSL---RFQGNSFQGPIP 111
+ I + S+ G++ DF + T LK+L + + F P
Sbjct: 235 NSFIRILQL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
++++ + + + L N L+T ++ G L L+TL
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353
Query: 172 DLSFNNLTGQIPRTLF---NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS 225
L N L ++ + + SL L + NS+S +++L ++++S N L+
Sbjct: 354 ILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 226 GPFPSWVTSNLQMNLVANN 244
+ +++ + +N
Sbjct: 413 DTIFRCLPPRIKVLDLHSN 431
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 70 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129
+ L S + I + +KL+ L N Q S L+ L +S +
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS--H 78
Query: 130 NVSSSLDFVMSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN 188
N + NL L L NA I G + L+ L LS +L + +
Sbjct: 79 NKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 189 IGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFT 246
LN + + E LQ+ + H+ FP+ + +++
Sbjct: 138 ---LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV--FPTNKEFHFILDVSVKTVA 190
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 48/297 (16%), Positives = 96/297 (32%), Gaps = 39/297 (13%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYL--NSWGAG 59
L+++ N S ++ +L +L +L +N L + +LE L L N
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK- 83
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
I N++ L S F I GN ++LK L + ++ L
Sbjct: 84 --ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL- 138
Query: 119 SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178
++ + + D L++ SL T I ++ +L +N+
Sbjct: 139 NISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 179 TGQIPRTLFNIG----------------SLNYLFLGNNSLSGTLPTQKSENLQNIDLSYN 222
+ + +LN + NS L + +S
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 223 HLSGP----FPSWVTSNLQM----NLVANNFTFDRSNISVFPGLHCLQ-RNFPCNRN 270
L G + ++L+ +V++ F F +S ++ + +NF +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY--IYEIFSNMNIKNFTVSGT 312
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSL---DFVMSLKNLTDLSLRNALITGSIPSGI-GEL 165
+P LS L IS N S L D + SL L L + + I + +
Sbjct: 15 VPKDLS--QKTTILNIS--QNYISELWTSDIL-SLSKLRILIISHNRIQ-YLDISVFKFN 68
Query: 166 QNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT----QKSENLQNIDLSY 221
Q L+ LDLS N L +L +L L N+ LP L+ + LS
Sbjct: 69 QELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLST 124
Query: 222 NHL-SGPFPSWV-TSNLQMNLVANNFTFDRSNISVFPGLHC--LQRNFPCNRNAPRYANF 277
HL + ++ LV ++ + + L FP N+ +
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184
Query: 278 SIK 280
S+K
Sbjct: 185 SVK 187
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 47/257 (18%), Positives = 80/257 (31%), Gaps = 35/257 (13%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
VP++L ++ T+L+ N S +I +L+KL L ++ S + + +
Sbjct: 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
+ L S KI LK L N+F +L ++
Sbjct: 72 EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-----ALPICKEFGNM--------- 114
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF---NI 189
L L L + S I L + L + + N
Sbjct: 115 ---------SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165
Query: 190 GSLNYLFLGNNSLSGTLP----TQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNF 245
SL+ +F N L T + L NI + + + LQ N +N
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225
Query: 246 TFDRSNISVFPGLHCLQ 262
T + + + LQ
Sbjct: 226 TLNNIETTWNSFIRILQ 242
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 6e-17
Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 16/238 (6%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP--STYAKLRNMQTL 75
+ L +T L N + P + NL L L+L+ +I S+ L+ +++L
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE----NKIKDLSSLKDLKKLKSL 114
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL 135
+ I + + + +L+SL N + + LS+L LD+L + D N S +
Sbjct: 115 SLEHNGIS-DI-NGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLED--NQISDI 168
Query: 136 DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYL 195
+ L L +L L I+ + + L+NL L+L + N+ N +
Sbjct: 169 VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 196 FLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNIS 253
+ SL + + ++ ++ + + F
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 3e-16
Identities = 56/304 (18%), Positives = 103/304 (33%), Gaps = 42/304 (13%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPST--YAKLRNMQTL 75
E + + + + L ++Q+ N+ I S L N+ L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 70
Query: 76 WASDAPFTGKIPDF--IGNWTKLKSLRFQGNSFQGPIP--SSLSKLASLDSLRISDIYNV 131
+ + K+ D + N L L N I SSL L L SL + N
Sbjct: 71 FLNG----NKLTDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEH--NG 120
Query: 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS 191
S ++ ++ L L L L N IT + + L L TL L N ++ +P L +
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176
Query: 192 LNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV---------- 241
L L+L N +S +NL ++L + ++ + N V
Sbjct: 177 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236
Query: 242 ---ANNFTFDRSNISVFPGLHCLQRNFPCNRN---APRYANFSIKCGGKQMRADNIVYEA 295
+++ +++ N+ + +F + A F + + Y+
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296
Query: 296 DNSS 299
D +
Sbjct: 297 DGTV 300
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
A + + L ++ + N+ I S+ GI L N+ L
Sbjct: 15 FPDDAFAETIKDNLK--KKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
L+ N LT P L N+ +L +LFL N + + + L+++ L +N +S
Sbjct: 71 FLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS 122
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 29/237 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGG 60
LL + +N + + NLK L L NN S + P L KLE+LYL+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS-----K 109
Query: 61 ----EIPSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQ-GPIPS-S 113
E+P + +Q L + T K+ + ++ + N + I + +
Sbjct: 110 NQLKELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 114 LSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQT 170
+ L +RI+D I + L +LT+L L IT + + L NL
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKIT-KVDAASLKGLNNLAK 220
Query: 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS 225
L LSFN+++ +L N L L L NN L +P + +Q + L N++S
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 53/265 (20%), Positives = 94/265 (35%), Gaps = 56/265 (21%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
VP++L + +L NN + + NL L L L K+
Sbjct: 45 KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILI-----------NNKISK 90
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IY 129
+ P KL+ L N + +P + +L LR+ + I
Sbjct: 91 IS-------------PGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEIT 134
Query: 130 NVSSSLDFVMSLKNLTDLSL-RNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF 187
V S+ F L + + L N L + I +G ++ L + ++ N+T IP+ L
Sbjct: 135 KVRKSV-FN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP 191
Query: 188 NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS----GPFPSWVTSNLQ-MN 239
SL L L N ++ + + NL + LS+N +S G + +L+ ++
Sbjct: 192 --PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--PHLRELH 246
Query: 240 LVANNFTFDRSNI-SVFPGLHCLQR 263
L N + +Q
Sbjct: 247 LNNNKLV----KVPGGLADHKYIQV 267
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 20/169 (11%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI----PSTYAKLRNMQTL 75
+K+L+ + + N + T+P G L +L+L+ G +I ++ L N+ L
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD----GNKITKVDAASLKGLNNLAKL 221
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IYNVSS 133
S + + N L+ L N +P L+ + + + + I + S
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 134 S----LDFVMSLKNLTDLSL-RNALITGSIPSGI-GELQNLQTLDLSFN 176
+ + + + +SL N + I + + L
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 42/241 (17%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEI--GNLAKLEQLYL--NSWGAGGEIPS----------- 64
L L +L +NN + P N+ + L L N + I
Sbjct: 127 PLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKS---ICEEDLLNFQGKHF 182
Query: 65 TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS---LD 121
T +L ++ ++ + T + +L GN F+ + + +
Sbjct: 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242
Query: 122 SLRISDIYNVSSSLDF------------VMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
SL +S+ YN+ SS + + L + I ++ + +L
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDL 301
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+ L L+ N + +I F + L L L N L ++ + + + L+ +DLSYNH+
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI 359
Query: 225 S 225
Sbjct: 360 R 360
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 35/258 (13%), Positives = 82/258 (31%), Gaps = 39/258 (15%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
+ ++ N + L++L L + L+ L L L+ +
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD----YNQ 90
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKI--PDFIGNWTKLKSLRFQGNSFQ----GPIP 111
+ L N++ L + G + +F T L+ L + N+ +
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 112 SSLSKLASL-------DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164
++ + L S+ D+ N ++ L ++T + + +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYL-------------FLGNNSLS----GTLP 207
++ TLDLS N + + F+ + + G+ + T
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 208 TQKSENLQNIDLSYNHLS 225
++ ++ DLS + +
Sbjct: 271 GLEASGVKTCDLSKSKIF 288
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 44/232 (18%), Positives = 81/232 (34%), Gaps = 29/232 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI---GNLAKLEQLYLNSWGA 58
L + +T L N F ++ K++ L L++
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN--- 248
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
+ + + + F G + +K+ + + S S
Sbjct: 249 ---SYNMGSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 119 SLDSLRISDIYNVSSSLD---FVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLS 174
L+ L ++ N + +D F L +L L+L + SI S + L L+ LDLS
Sbjct: 300 DLEQLTLA--QNEINKIDDNAFW-GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLS 355
Query: 175 FNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYN 222
+N++ + F + +L L L N L ++P + +LQ I L N
Sbjct: 356 YNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 6e-12
Identities = 50/239 (20%), Positives = 77/239 (32%), Gaps = 39/239 (16%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSW----------GAGGEIPSTYAK 68
N++ VL N ++ E N L G E K
Sbjct: 152 NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 69 LRNMQTLWASDAPFTG-------------KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS 115
++ TL S F KI I + + F +F+ P +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 116 KL--ASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQT 170
L + + + +S I+ + S+ F +L L+L I I L +L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSV-FS-HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327
Query: 171 LDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS 225
L+LS N L I +F N+ L L L N + L NL+ + L N L
Sbjct: 328 LNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 28/241 (11%)
Query: 24 LTVLSFGNNNFSGTLPPE-IGNLAKLEQLYLNSWGAGGEIPS-TYAKLRNMQTLWASDAP 81
+ + N+ + L L L+ L + G I + T+ L ++ L
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 82 FTGKIPDFI-GNWTKLKSLRFQGNSFQGPI--PSSLSKLASLDSLRISD--IYNVSSSLD 136
F ++ L+ L + G + + L SL+ L + D I + +
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGI-----------GELQNLQTLDLSFNNLTGQIPRT 185
F+ +++ L L + SI L ++ D++ L +
Sbjct: 150 FL-NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 186 LFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNF 245
F S+ L L N ++ + + + + LS + N+ + NF
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY------NMGSSFGHTNF 261
Query: 246 T 246
Sbjct: 262 K 262
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 143 NLTDLSLRNALITGSIPSG-IGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
++ + L I + LQ+LQ L + I F + SL L L N
Sbjct: 31 HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 201 SLSGTLPT---QKSENLQNIDLSYNHLS 225
L T NL+ + L+ +L
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLD 116
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 16/115 (13%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSE 212
+P+ ++ +DLS N++ ++ T F + L +L + + + +
Sbjct: 27 ELPA------HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79
Query: 213 NLQNIDLSYNHLSGPFPSWVTSNL----QMNLVANNFTFDRSNISVFPGLHCLQR 263
+L + L YN + + L + L N + + F L L+
Sbjct: 80 SLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 570 GYLAPEYAMRGHL-----TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLH 624
Y+APE + D+++ G+ E+ S +D +D + E
Sbjct: 198 RYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP 257
Query: 625 ENNQSLGLV-----DPTLTE-FNDKEALRVIG-VALLCTQASPMMRPPMSRVVAML 673
+V P L + + + ++ C R V +
Sbjct: 258 SLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERI 313
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 57/284 (20%), Positives = 96/284 (33%), Gaps = 41/284 (14%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGG 60
LL + +N S + L+ L L NN S + + L KL++LY++
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS-----K 111
Query: 61 ----EIPSTYAKLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQ-GPIPSS 113
EIP ++ L D K+P F G + + GN +
Sbjct: 112 NHLVEIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGL-RNMNCIEMGGNPLENSGFEPG 167
Query: 114 LSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQT 170
L+ LRIS+ + + L + L +L L + I +I L
Sbjct: 168 AFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQ-AIELEDLLRYSKLYR 221
Query: 171 LDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHLS-- 225
L L N + I + +L L L NN LS +P + LQ + L N+++
Sbjct: 222 LGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279
Query: 226 ------GPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPGLHCLQ 262
+ ++L N + + F +
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 59/264 (22%), Positives = 93/264 (35%), Gaps = 55/264 (20%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPE-IGNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
+VP+E+ + T+L NN+ S L + L L L L K+
Sbjct: 47 AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLV-----------NNKISK 92
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD--IY 129
+ KL+ L N IP +L +SL LRI D I
Sbjct: 93 IH-------------EKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIR 136
Query: 130 NVSSSLDFVMSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN 188
V + F L+N+ + + N L G + L L +S LT IP+ L
Sbjct: 137 KVPKGV-FS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP- 192
Query: 189 IGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLS----GPFPSWVTSNLQ-MNL 240
+LN L L +N + + + L + L +N + G L+ ++L
Sbjct: 193 -ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL--PTLRELHL 248
Query: 241 VANNFTFDRSNI-SVFPGLHCLQR 263
N + + + P L LQ
Sbjct: 249 DNNKLS----RVPAGLPDLKLLQV 268
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 48/235 (20%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYL--NSWGAG 59
L ++ N +P L L L +N +P + L + + + N
Sbjct: 107 LYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS 162
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
G P + L + L S+A T IP L L N Q L + +
Sbjct: 163 GFEPGAFDGL-KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSK 218
Query: 120 LDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLD----- 172
L L + I + + L L +L L N ++ +P+G+ +L+ LQ +
Sbjct: 219 LYRLGLGHNQIRMIENGS-L-SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 173 -------------------------LSFNNLT-GQIPRTLF-NIGSLNYLFLGNN 200
L N + ++ F + + GN
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNS 201
+L + + + ++P I + LDL N+++ ++ + F + L L L NN
Sbjct: 34 HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89
Query: 202 LSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVTSNLQ-MNLVANNFTFDRSNISVFPG 257
+S + LQ + +S NHL P + S+L + + N VF G
Sbjct: 90 IS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKG--VFSG 145
Query: 258 LHCLQR 263
L +
Sbjct: 146 LRNMNC 151
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 8e-16
Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 26/233 (11%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTL 75
E + + + + L ++Q+ N+ +I S L N+ L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANN----SDIKSVQGIQYLPNVTKL 73
Query: 76 WASDAPFTGKIPDF--IGNWTKLKSLRFQGNSFQGPIP--SSLSKLASLDSLRISDIYNV 131
+ + K+ D + N L L N + SSL L L SL + N
Sbjct: 74 FLNGN----KLTDIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEH--NG 123
Query: 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS 191
S ++ ++ L L L L N IT I + + L L TL L N ++ +P L +
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179
Query: 192 LNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
L L+L N +S +NL ++L + ++ + N V N
Sbjct: 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTY--AKLRNMQTL 75
+ L +T L N + P + NL L L+L+ ++ L+ +++L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSL 117
Query: 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL 135
+ I + + + +L+SL N + + LS+L LD+L + D N S +
Sbjct: 118 SLEHNGIS-DI-NGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLED--NQISDI 171
Query: 136 DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYL 195
+ L L +L L I+ + + L+NL L+L + N+ N +
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Query: 196 FLGNNSLSGTLPTQKSEN--LQNIDLSYN 222
+ SL P S++ + ++ ++
Sbjct: 230 KNTDGSL--VTPEIISDDGDYEKPNVKWH 256
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 20/189 (10%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L +LK+L LS +N S + + +L +LE LYL + ++L + TL
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLG--NNKITDITVLSRLTKLDTLSL 163
Query: 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDF 137
D + I TKL++L N S L LA L +L + ++++
Sbjct: 164 EDNQIS-DIVPL-AGLTKLQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQECLNKP 216
Query: 138 VMSLKNLTDL-SLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLF 196
+ NL +++N + P I + + + ++ ++ ++++F
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE--------FTNEVSFIF 268
Query: 197 LGNNSLSGT 205
++
Sbjct: 269 YQPVTIGKA 277
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 149 LRNALITGSIP----SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204
L + IT P +L ++T + + S++ + N+ +
Sbjct: 3 LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS 60
Query: 205 TLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQM-NLVANNFTFDRSNISVFPGLHCLQ 262
Q N+ + L+ N L+ P NL L N ++S L L+
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK----DLSSLKDLKKLK 115
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 31/240 (12%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYL--NSWGA 58
+ ++ + FS L L L N S L L+ L L L N +
Sbjct: 88 INTIEEDSFSS--------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT 138
Query: 59 GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSKL 117
GE S ++ L +Q L + KI T L+ L + Q P SL +
Sbjct: 139 LGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 118 ASLDSLRISDIYNVSSSL--DFVMSLKNLTDLSLRNALITG----SIPSGI----GELQN 167
++ L + L FV ++ L LR+ + + +G +
Sbjct: 198 QNVSHLILH--MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255
Query: 168 LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+ + ++ +L Q+ + L I L L N L ++P + +LQ I L N
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 31/245 (12%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L +++N + +L L L +N + T+ + +L LE L L+
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY----NY 111
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPS-SL 114
+ S + L ++ L P+ + + + TKL+ LR I
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 115 SKLASLDSLRISD--IYNVSS-SLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQT 170
+ L L+ L I + + SL S++N++ L L + +++
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLK---SIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226
Query: 171 LDLSFNNLTG----QIPRTLFN----IGSLNYLFLGNNSLSGTLP-TQKSENLQNIDLSY 221
L+L +L ++ N + + + + SL + + L ++ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286
Query: 222 NHLSG 226
N L
Sbjct: 287 NQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 42/260 (16%), Positives = 78/260 (30%), Gaps = 46/260 (17%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
S+P L + + L NN + + L+ L L S N
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS---------------N 86
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSL-SKLASLDSLRISD--I 128
D+ F+ L+ L N + SS L+SL L +
Sbjct: 87 GINTIEEDS-FSS--------LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPY 136
Query: 129 YNVSSSLDFVMSLKNLTDLSL-RNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTL 186
+ + F L L L + T I L L+ L++ ++L
Sbjct: 137 KTLGETSLFS-HLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQ-SYEPKS 193
Query: 187 F-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGP----FPSWVTSNLQM 238
+I ++++L L L + +++ ++L L + T++L
Sbjct: 194 LKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252
Query: 239 NLVANNFTFDRSNISVFPGL 258
N ++ L
Sbjct: 253 KFTFRNVKITDESLFQVMKL 272
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 4e-15
Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 24/222 (10%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI---PSTYAKL 69
R+ ++L + S L E+ + +L++L + I L
Sbjct: 340 CWCRDSATDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 398
Query: 70 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129
+ + P L+S NS + + L L ++ +
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL-HLAHKDLTVLC 457
Query: 130 NVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNI 189
++ L +T L L + + ++P + L+ L+ L S N L + +
Sbjct: 458 HLEQ-------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----NVDGV 504
Query: 190 G---SLNYLFLGNN---SLSGTLPTQKSENLQNIDLSYNHLS 225
L L L NN + P L ++L N L
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 48/193 (24%), Positives = 70/193 (36%), Gaps = 16/193 (8%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
++P +L K+ T+L N T +L QL L+ ++ L
Sbjct: 24 ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDR-AELTKLQ-VDGTLPV 78
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131
+ TL S +P L L N +L L L L + N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--GNE 135
Query: 132 SSSLD---FVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF 187
+L L LSL N +T +P+G+ L+NL TL L N+L IP+ F
Sbjct: 136 LKTLPPGLL-TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Query: 188 NIGSLNYLFLGNN 200
L + FL N
Sbjct: 193 GSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNAL 153
L N ++L L L + + L +L L L L +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVLGTLDLSHNQ 88
Query: 154 ITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---Q 209
+ S+P L L LD+SFN LT +P +G L L+L N L TLP
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145
Query: 210 KSENLQNIDLSYNHLS 225
+ L+ + L+ N+L+
Sbjct: 146 PTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNS 201
+ +++ +T ++P + ++ L LS N L L L L
Sbjct: 11 SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66
Query: 202 LSGTLPTQKSENLQNIDLSYNHLS 225
L+ L +DLS+N L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQ 90
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 50/289 (17%), Positives = 91/289 (31%), Gaps = 32/289 (11%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
L +L + N+ + ++ NL KL ++ +
Sbjct: 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94
Query: 62 IPS-TYAKLRNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGN---------SFQGP 109
I + L N+Q L S+ +PD I + + L Q N SF G
Sbjct: 95 INPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVG- 151
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
+ L L+ I +I+N + + + N + +P+ +
Sbjct: 152 LSFESVIL-WLNKNGIQEIHNSAFNG-----TQLDELNLSDNNNLE-ELPNDVFHGASGP 204
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT-QKSENLQNIDLSYNHLSG 226
LD+S + +P N+ L N LPT +K L L+Y
Sbjct: 205 VILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLTYPSHCC 260
Query: 227 PFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYA 275
F +W +++ + N + + QR+ N Y+
Sbjct: 261 AFANWRRQISELHPICNKSILRQEV--DYMTQARGQRSSLAEDNESSYS 307
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNS 201
+ + + +T IPS + +N L L I + F G L + + N
Sbjct: 10 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65
Query: 202 LSGTLPT---QKSENLQNIDLS-YNHLS 225
+ + L I + N+L
Sbjct: 66 VLEVIEADVFSNLPKLHEIRIEKANNLL 93
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 28/216 (12%)
Query: 24 LTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEI----PSTYAKLRNMQTLWAS 78
L N L + +L+ L L+ EI Y L ++ TL +
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSR----CEIQTIEDGAYQSLSHLSTLILT 84
Query: 79 DAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSL-SKLASLDSLRISD--IYNVSSS 134
P + + L+ L + + + L +L L ++ I +
Sbjct: 85 GNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 135 LDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQ----TLDLSFNNLTGQIPRTLFNI 189
F +L NL L L + I SI L + +LDLS N + I F
Sbjct: 143 EYFS-NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 190 GSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYN 222
L L L N L ++P + +LQ I L N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 28/197 (14%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLN-----SWGAGGEIPS-TYAKLRNM 72
+ EL VL T+ +L+ L L L S + ++ L ++
Sbjct: 50 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS------LALGAFSGLSSL 102
Query: 73 QTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISD--I 128
Q L A + + +F G+ LK L N Q +P S L +L+ L +S I
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 129 YNVSSSLDFVMSLKNLTDLSLRNAL----ITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184
++ + D L + L+L L + I G + L+ L L N L +P
Sbjct: 162 QSIYCT-DLR-VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPD 217
Query: 185 TLF-NIGSLNYLFLGNN 200
+F + SL ++L N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 28/167 (16%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
+P S L L + + S F S L L L I +I G L +L
Sbjct: 26 LPFSTKNL-DLSFNPLRHL----GSYSFF-SFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
TL L+ N + + F + SL L +L+ +L + L+ +++++N +
Sbjct: 79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136
Query: 225 S-----GPFPSWVTSNLQ-MNLVANNFTFDRSNIS--VFPGLHCLQR 263
F + +NL+ ++L +N +I LH +
Sbjct: 137 QSFKLPEYFSN--LTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPL 177
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSE 212
IP + + + LDLSFN L + F + L L L + T+ Q
Sbjct: 21 KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76
Query: 213 NLQNIDLSYNHLS----GPFPSWVTSNLQ-MNLVANNFTFDRSNIS--VFPGLHCLQR 263
+L + L+ N + G F S+LQ + V N ++ L L+
Sbjct: 77 HLSTLILTGNPIQSLALGAFSG--LSSLQKLVAVETNLA----SLENFPIGHLKTLKE 128
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 10/205 (4%)
Query: 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG 60
M+ V + VF S E+ + ++ + + L
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367
Query: 61 EIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ----GPIPSSLSK 116
+ + L+ +QTL + SL S + +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426
Query: 117 LASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176
S+ L +S N+ + F + L L N I SIP + LQ LQ L+++ N
Sbjct: 427 AESILVLNLSS--NMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483
Query: 177 NLTGQIPRTLF-NIGSLNYLFLGNN 200
L +P +F + SL Y++L +N
Sbjct: 484 QLKS-VPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 19/233 (8%)
Query: 3 LSVAHNVFSGSVPRELGN-----LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG 57
L++ + + + RE LK L + N F + A++ L+
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
Query: 58 AGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117
+ L + FT + +L++L Q N +
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMT 399
Query: 118 ASLDSLRISDIYNVS-SSLDF---VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDL 173
++ SL D+ S +S + +++ L+L + ++TGS+ + ++ LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDL 457
Query: 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLS----GTLPTQKSENLQNIDLSYN 222
N + IP+ + ++ +L L + +N L G S LQ I L N
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS--LQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 52/265 (19%), Positives = 99/265 (37%), Gaps = 22/265 (8%)
Query: 2 LLSVAHNVFSGSVPRELGNLKELTV----LSFGNNNFSGTLPPEIGNLAKLEQLYLN--- 54
L+ +++FS V + L L + L+ N T E+ L + L
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260
Query: 55 -SWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIP--DFIGNWTKLKSLRF---QGNSFQG 108
+W ++ + R ++ L + T +I +F + T LKSL + F
Sbjct: 261 TTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319
Query: 109 PIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNL 168
+ S A ++ +S + S + T L+ + T S+ G L+ L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG------TLPTQKSENLQNIDLSYN 222
QTL L N L + +++ L + SL+ +E++ ++LS N
Sbjct: 380 QTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 223 HLSGPFPSWVTSNLQ-MNLVANNFT 246
L+G + ++ ++L N
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 18/118 (15%)
Query: 140 SLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLG 198
L L L L + I S+ + Q+L+ LD+S N L I SL +L L
Sbjct: 74 FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISCCPM--ASLRHLDLS 129
Query: 199 NNSLSGTLPTQKS----ENLQNIDLSYNHL-SGPFPS-------WVTSNLQMNLVANN 244
N LP K L + LS + +L +
Sbjct: 130 FNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 16/167 (9%)
Query: 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAGGEIPSTYAKLRNMQTLW 76
+ T L+F N F+ ++ L +L+ L L N +NM +L
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKVALMTKNMSSLE 406
Query: 77 ASDAPFTG---KIPDFIGNW-TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
D D W + L N G + L + L + N
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH--NNRI 462
Query: 133 SSL-DFVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNN 177
S+ V L+ L +L++ + + S+P G+ L +LQ + L N
Sbjct: 463 MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 45/257 (17%), Positives = 74/257 (28%), Gaps = 37/257 (14%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPP-EIGNLAKLEQLYLNSWGAGGEI----PSTYA 67
VP++L LS N+ S L +I L++L L L+ I +
Sbjct: 45 HVPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSH----NRIRSLDFHVFL 97
Query: 68 KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRIS 126
++++ L S I L+ L N F P+ L L L +S
Sbjct: 98 FNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Query: 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG-IGELQNLQTLDLSFNNLTGQIPRT 185
LD + + +L + L++ I G LQ T L +
Sbjct: 155 A--AKFRQLDL-LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 186 LFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNF 245
N+ +LQ ++ N + S L N
Sbjct: 212 QVNMSVNA-----------------LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254
Query: 246 TFDRSNISVFPGLHCLQ 262
T + + Q
Sbjct: 255 TLQHIETTWKCSVKLFQ 271
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
L + G + + + L+ ++ ++ + + + N++ L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDN--SNIQSLAGMQFFTNLKELHL 70
Query: 78 SDAPFTGKIPDF--IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY---NVS 132
S +I D + + TKL+ L N L L + S +S ++ N
Sbjct: 71 SH----NQISDLSPLKDLTKLEELSVNRN--------RLKNLNGIPSACLSRLFLDNNEL 118
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
D ++ LKNL LS+RN + SI +G L L+ LDL N +T L + +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKV 174
Query: 193 NYLFLGNNSLSGTLPTQKSENLQNIDLSYN 222
N++ L P + L + +
Sbjct: 175 NWIDLTGQKCV-NEPVKYQPELYITNTVKD 203
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 7e-12
Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 19/211 (9%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP--STYAKLRNMQTL 75
L + + N+N +L + L++L+L+ +I S L ++ L
Sbjct: 37 QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLS----HNQISDLSPLKDLTKLEEL 90
Query: 76 WASDAPFTGKIPDFIG-NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSS 134
+ ++ + G L L N + SL L +L+ L I + N S
Sbjct: 91 SVNR----NRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN--NKLKS 142
Query: 135 LDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNY 194
+ + L L L L IT + G+ L+ + +DL+ + + + N
Sbjct: 143 IVMLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200
Query: 195 LFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
+ + + + + +
Sbjct: 201 VKDPDGRWISPYYISNGGSYVDGCVLWELPV 231
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
I+ ++ L N +L +T EL +Q + +N+ +
Sbjct: 8 PINQVFPDPG-------LANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA 57
Query: 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
+ +L L L +N +S P + L+ + ++ N L
Sbjct: 58 -GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK 98
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 21/168 (12%)
Query: 110 IPSSLSKLASLDSLRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQ 166
+P SL + L +S + + + L NL L L + + I S +
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 167 NLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYN 222
NL+ LDLS N+L + LF ++ +L L L NN + + + LQ + LS N
Sbjct: 89 NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146
Query: 223 HLS----GPFPSWVT-SNLQ-MNLVANNFTFDRSNISVFPGLHCLQRN 264
+S L ++L +N L +N
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--DLQKLPAWVKN 192
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 46/205 (22%), Positives = 69/205 (33%), Gaps = 50/205 (24%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI--GNLAKLEQLYLNSWGAGGEI----PSTY 66
+VP+ L + +L +NN S L E L L L L+ + +
Sbjct: 32 NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLS----HNHLNFISSEAF 84
Query: 67 AKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126
+ N++ L S N L +L S L +L+ L +
Sbjct: 85 VPVPNLRYLDLS------------SN--HLHTLD----------EFLFSDLQALEVLLLY 120
Query: 127 DIYNVSSSLD---FVMSLKNLTDLSLRNALITGSIPSGI----GELQNLQTLDLSFNNLT 179
N +D F + L L L I+ P + +L L LDLS N L
Sbjct: 121 --NNHIVVVDRNAFE-DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 180 GQIPRTLFNIGSL--NYLFLGNNSL 202
L + + N L+L NN L
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 18/221 (8%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPS-TYAKLR 70
+P L + T+P NL + ++Y++ ++ S ++ L
Sbjct: 25 RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80
Query: 71 NMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISD 127
+ + + I LK L + P + + L I+D
Sbjct: 81 KVTHIEIRNTRNLTYIDPDALKEL-PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 128 ---IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184
+ ++ + F L L N T S+ L + L+ N I +
Sbjct: 140 NPYMTSIPVNA-FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 185 TLFN--IGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH 223
F + L + S++ LP++ E+L+ +
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 143 NLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
+ L L + +IPS L N+ + +S + Q+ F N+ + ++ + N
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 201 SLSGTLPT---QKSENLQNIDLSYNHLS----GPFPSWVTSNLQMNLVANN 244
+ ++ L+ + + L + + N
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD---FVMSLKNLTDLSLR 150
K L Q N + +L L L ++ N +L F LKNL L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN--DNKLQTLPAGIFK-ELKNLETLWVT 93
Query: 151 NALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT 208
+ + ++P G+ +L NL L L N L +P +F ++ L YL LG N L +LP
Sbjct: 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150
Query: 209 ---QKSENLQNIDLSYNHLS 225
K +L+ + L N L
Sbjct: 151 GVFDKLTSLKELRLYNNQLK 170
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 24 LTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPS-TYAKLRNMQTLWASDAP 81
L +N S +LP + L KL LYLN +P+ + +L+N++TLW +D
Sbjct: 39 TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 82 FTGKIPDFIGNW-TKLKSLRFQGNSFQGPIPSSL-SKLASLDSLRISDIYNVSSSLD--- 136
+P + + L LR N + +P + L L L + YN SL
Sbjct: 97 LQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLG--YNELQSLPKGV 152
Query: 137 FVMSLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNY 194
F L +L +L L N + +P G +L L+TL L N L ++P F ++ L
Sbjct: 153 FD-KLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209
Query: 195 LFLGNN 200
L L N
Sbjct: 210 LQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSE 212
+IPS I + + LDL N L+ +P F + L L+L +N L TLP ++ +
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 213 NLQNIDLSYNHLS 225
NL+ + ++ N L
Sbjct: 86 NLETLWVTDNKLQ 98
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-10
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 113 SLSKLASLD-SLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
++ ++ I I + ++L +LK L+L I I S + ++NL+ L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLS---TLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
L N + +I +L L++ N ++ +K NL+ + +S N ++
Sbjct: 76 SLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
+P +++++ L+ I I F K L + L N I+ + L++L
Sbjct: 30 LPETITEI-RLEQNTIKVI----PPGAFS-PYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+L L N +T ++P++LF + SL L L N ++ L Q NL + L N L
Sbjct: 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140
Query: 225 S 225
Sbjct: 141 Q 141
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD---FVMSLKNLTDLSLR 150
KL+ + N P + L SL+SL + N + L F L +L L L
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY--GNKITELPKSLFE-GLFSLQLLLLN 112
Query: 151 NALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
I + +L NL L L N L I + F + ++ + L N
Sbjct: 113 ANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGE 61
+ + N P K+L + NN S L P+ L L L L G +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY----GNK 91
Query: 62 I----PSTYAKLRNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSLSK 116
I S + L ++Q L + + + L L N Q + S
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 117 LASLDSLRISD 127
L ++ ++ ++
Sbjct: 151 LRAIQTMHLAQ 161
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
IP ++L L ++ + ++ F L L ++ N IT I G +
Sbjct: 30 IPQYTAEL----RLNNNEFTVLEATGIFK-KLPQLRKINFSNNKIT-DIEEGAFEGASGV 83
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+ L+ N L + +F + SL L L +N ++ + +++ + L N +
Sbjct: 84 NEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141
Query: 225 S 225
+
Sbjct: 142 T 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 19/146 (13%)
Query: 62 IPSTYAKLR---NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA 118
IP A+LR N T+ + F +L+ + F N + +
Sbjct: 30 IPQYTAELRLNNNEFTVLEATGIFKK--------LPQLRKINFSNNKITDIEEGAFEGAS 81
Query: 119 SLDSLRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSF 175
++ + ++ N ++ M L++L L LR+ IT + + L +++ L L
Sbjct: 82 GVNEILLT--SNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138
Query: 176 NNLTGQIPRTLF-NIGSLNYLFLGNN 200
N +T + F + SL+ L L N
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 111 PSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 170
PS + +L LD+ R ++ + L LS N +T SI + + +L L+
Sbjct: 16 PSDVKEL-VLDNSRSNEGKL----EGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKK 68
Query: 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNN---SLSGTLPTQKSENLQNIDLSYN 222
L+LS N ++G + +L +L L N LS P +K ENL+++DL
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 27/126 (21%)
Query: 140 SLKNLTDLSLRNALIT-GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLG 198
+ ++ +L L N+ G + E + L+ L LT
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------------- 55
Query: 199 NNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTS--NLQMNLVANNFTFDRSNISVFP 256
S++ LP L+ ++LS N +SG NL ++ N D S I
Sbjct: 56 --SIAN-LPKLN--KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110
Query: 257 GLHCLQ 262
L L+
Sbjct: 111 KLENLK 116
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 111 PSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 170
P+++ +L LD+ + +D NL LSL N + S+ S + +L L+
Sbjct: 23 PAAVREL-VLDNCKSNDG----KIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKK 75
Query: 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNN---SLSGTLPTQKSENLQNIDLSYN 222
L+LS N + G + + +L +L L N +S P +K E L+++DL
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 111 PSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 170
+L L +I I N+ ++LD + + I + G L+ L+T
Sbjct: 18 AVRDREL-DLRGYKIPVIENLGATLD------QFDAIDFSDNEIR-KL-DGFPLLRRLKT 68
Query: 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNN---SLSGTLPTQKSENLQNIDLSYN 222
L ++ N + + L L L NN L P ++L + + N
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNAL 153
+ + L +G I + + L D++ SD N LD L+ L L + N
Sbjct: 19 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSD--NEIRKLDGFPLLRRLKTLLVNNNR 75
Query: 154 ITGSIPSGIGELQNLQTLDLSFNNLT--GQIPRTLFNIGSLNYLFLGNN 200
I L +L L L+ N+L G + L ++ SL YL + N
Sbjct: 76 ICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 140 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199
+ +L LR I I + L +D S N + ++ + L L + N
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73
Query: 200 NSLSGTLPT--QKSENLQNIDLSYNHLS 225
N + Q +L + L+ N L
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 570 GYLAPEYAM-------RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN 622
Y+APE ++ D+++ G+ EI + + + Y + +
Sbjct: 193 RYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPE-YQMAFQTE 251
Query: 623 LHENNQSLGLVD--------PTLTE--FNDKEALRVIG-VALLCTQASPMMRPPMSRVVA 671
+ + + P E + A+R + C R
Sbjct: 252 VGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEE 311
Query: 672 MLA 674
+A
Sbjct: 312 RMA 314
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL-DFVM-SLKNLTDLSL-RNAL 153
L GN F +P LS L + +S N S+L + ++ L L L N L
Sbjct: 34 TELYLDGNQFTL-VPKELSNYKHLTLIDLS--NNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 154 ITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
IP L++L+ L L N+++ +P F ++ +L++L +G N
Sbjct: 91 --RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSE 212
+ +NL L + + +G L L + + L + +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 213 NLQNIDLSYNHLS----GPFPSWVTSNLQMN 239
L ++LS+N L L ++
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLS 111
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 130 NVSSSLDFVMSLKNLTDLSLRNALITGSIPSG-IGELQNLQTLDLSFNNLTGQIPRTLF- 187
SL + +NLT+L + N + + L L+ L + + L + F
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFH 77
Query: 188 NIGSLNYLFLGNNSLSGTLP--TQKSENLQNIDLSYNHL 224
L+ L L N+L +L T + +LQ + LS N L
Sbjct: 78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 36/135 (26%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
Q L+ D T P + LK L N L L L + N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG--TNQL 100
Query: 133 SSL-----DFVMSLKNLTDLSL-RNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTL 186
+ L D L +L +L + N L +P GI L +L L L N L IP
Sbjct: 101 TVLPSAVFD---RLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLK-SIPHGA 154
Query: 187 F-NIGSLNYLFLGNN 200
F + SL + +L N
Sbjct: 155 FDRLSSLTHAYLFGN 169
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 49 EQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNW-TKLKSLRFQGNSFQ 107
E+L L S G +T+ L + L + + + T+L +L N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 108 GPIPSSLSKLASLDSLRISDIYNVSSSL-----DFVMSLKNLTDLSLRNALITGSIPSGI 162
L LD L + N SL D L L +L L + SIP+G
Sbjct: 97 SLPLGVFDHLTQLDKLYLG--GNQLKSLPSGVFD---RLTKLKELRLNTNQLQ-SIPAGA 150
Query: 163 -GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
+L NLQTL LS N L +P F +G L + L N
Sbjct: 151 FDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
IP+ KL L S ++ + S F L LT L+L + ++ +G+ +L L
Sbjct: 33 IPADTEKL-DLQSTGLATL----SDATF-RGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 169 QTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
TL L+ N L +P +F ++ L+ L+LG N L +LP+ + L+ + L+ N L
Sbjct: 86 GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143
Query: 225 S 225
Sbjct: 144 Q 144
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT---QKSE 212
S+PSGI + + LDL L + F + L +L L N L TL
Sbjct: 28 SVPSGIPA--DTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLT 83
Query: 213 NLQNIDLSYNHLS 225
L + L+ N L+
Sbjct: 84 ELGTLGLANNQLA 96
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 4e-07
Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 35/200 (17%)
Query: 55 SWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSF-----QGP 109
SW ++ + + L T + LKSL +
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFV------MSLKNLTDLSLRNALITGSIPSGIG 163
+ S L L L + Y ++ NL L + +A +
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273
Query: 164 E---LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
E L L+T+D+S LT + G L + K +L+ I++
Sbjct: 274 ESDILPQLETMDISAGVLTDE----------------GARLLLDHVDKIK--HLKFINMK 315
Query: 221 YNHLSGPFPSWVTSNLQMNL 240
YN+LS + +L M +
Sbjct: 316 YNYLSDEMKKELQKSLPMKI 335
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 18/167 (10%), Positives = 53/167 (31%), Gaps = 17/167 (10%)
Query: 36 GTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTK 95
L P + + L L + L+++ + + P + +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVVEDILGSDLPN 220
Query: 96 LKSLRFQGNSFQGPIPSSLSKLASL------DSLRISDIYNVSSSLDFVMSL------KN 143
L+ L ++ L +L+ I + V
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 144 LTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQIPRTL 186
L + + ++T + + ++++L+ +++ +N L+ ++ + L
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 94 TKLKSLRFQGNSFQGPIPSSLS---KLASLDSLRISDIYNVSSSLDF--VMSLKNLTDLS 148
++ L GN +S +L +L L ++ N SL L NL +L
Sbjct: 63 PNVRYLALGGNKLH-----DISALKELTNLTYLILT--GNQLQSLPNGVFDKLTNLKELV 115
Query: 149 LRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTL 206
L + S+P G+ +L NL L+L+ N L +P+ +F + +L L L N L +L
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SL 172
Query: 207 PT---QKSENLQNIDLSYNHL 224
P K L+++ L N L
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQL 193
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 32/159 (20%), Positives = 49/159 (30%), Gaps = 34/159 (21%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE + +EK DVFS+G+ E+I+ R D W +H +
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR-- 222
Query: 631 GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVISKPSYLT 690
P L + K ++ C P RP M +V ++
Sbjct: 223 ----PPLIKNLPKPIESLM---TRCWSKDPSQRPSMEEIVKIM----------------- 258
Query: 691 DWDFKDITASFLNEDTPTPSSSIKRSNSKEKSERENPVD 729
+ F D P E E VD
Sbjct: 259 ----THLMRYFPGADEPLQYPCQHSLPPGEDGRVEPYVD 293
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 573 APEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGL 632
APE EK DVFSFG+ EII + L + L
Sbjct: 190 APEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN-----VRGFLDRYC 244
Query: 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
F + + C P RP ++ L
Sbjct: 245 PPNCPPSFFP--------ITVRCCDLDPEKRPSFVKLEHWL 277
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 129 YNVSSSLDFVM--SLKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRT 185
N SL + L +LT L L + S+P+G+ +L +L L+LS N L +P
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNG 94
Query: 186 LFN-IGSLNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 224
+F+ + L L L N L +LP K L+++ L N L
Sbjct: 95 VFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 110 IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI-GELQNL 168
IP ++L L +++ +SS F L +L L L+ +T I ++
Sbjct: 27 IPLHTTEL----LLNDNELGRISSDGLF-GRLPHLVKLELKRNQLT-GIEPNAFEGASHI 80
Query: 169 QTLDLSFNNLTGQIPRTLFN-IGSLNYLFLGNNSLS----GTLPTQKSENLQNIDLSYN 222
Q L L N + +I +F + L L L +N +S G+ S L +++L+ N
Sbjct: 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--LTSLNLASN 136
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 43/262 (16%), Positives = 73/262 (27%), Gaps = 52/262 (19%)
Query: 16 RELGNLKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYLNSWGAGGEIPSTYA---- 67
L + + N L I + LE + G
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85
Query: 68 ------KLRNMQTLWASDAPFTGK----IPDFIGNWTKLKSLRFQGNSF----------- 106
K + T+ SD F + DF+ T L+ L N
Sbjct: 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145
Query: 107 --QGPIPSSLSKLASLDSLRISD--IYNVSSSL--DFVMSLKNLTDLSLR-NAL----IT 155
+ + L S+ + N S S + L + + N + I
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205
Query: 156 GSIPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNN--------SLS 203
+ G+ Q L+ LDL N T + L + +L L L + ++
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265
Query: 204 GTLPTQKSENLQNIDLSYNHLS 225
++ LQ + L YN +
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIE 287
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 45/240 (18%)
Query: 18 LGNLKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYL--NSWGAGGEIPSTYAKLRN 71
L +L + +N F T L + LE LYL N G
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA----------- 138
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRIS- 126
+ + A + N L+S+ N + + L ++++
Sbjct: 139 GAKI--ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196
Query: 127 -DIYNVSSSLDFVMSLK---NLTDLSLRNALITG----SIPSGIGELQNLQTLDLSFNNL 178
I + L L L L++ T ++ + NL+ L L+ L
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256
Query: 179 TGQ----IPRTLFNIG--SLNYLFLGNNSLS-------GTLPTQKSENLQNIDLSYNHLS 225
+ + + + L L L N + T+ +K +L ++L+ N S
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 32/160 (20%)
Query: 94 TKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRISD-------IYNVSSSLDFVMSLK 142
++L++L + L SL L ++ + +L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP--GC 313
Query: 143 NLTDLSLRNALITG----SIPSGIGELQNLQTLDLSFNNLTG----QIPRTLFNIGS-LN 193
L L +++ T S + + + L L +S N L ++ + L GS L
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373
Query: 194 YLFLGNN--------SLSGTLPTQKSENLQNIDLSYNHLS 225
L+L + SL+ TL + +L+ +DLS N L
Sbjct: 374 VLWLADCDVSDSSCSSLAATL--LANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 30/159 (18%)
Query: 94 TKLKSLRFQGNSFQ----GPIPSSLSKLASLDSLRIS--DIYNVSSSLDFVMSLKN---- 143
+ + +R I S+L +L L + ++ + L+
Sbjct: 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCK 86
Query: 144 LTDLSLRNALIT----GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIG-----SLNY 194
+ LSL+N +T G + S + L LQ L LS N L + L L
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 195 LFLGNNS--------LSGTLPTQKSENLQNIDLSYNHLS 225
L L S L+ L + + + + +S N ++
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKP--DFKELTVSNNDIN 183
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 78/503 (15%), Positives = 145/503 (28%), Gaps = 141/503 (28%)
Query: 9 VFS-GSVPRE--LGNLKE-LTVLSFGNNNF------SG--TLPPEIGNLAKLEQLYLNS- 55
VF+ +V R L++ L L N SG + ++ K++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 56 -WGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGN------WTKLKSLRFQGNSFQG 108
W S L +Q L P D N + + R
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSK 241
Query: 109 PIPSSLSKLASLDSLRISDIYNVSSSLD-FVMSLKNL--T-DLSLRNALITGS------- 157
P + L L L ++ N + + + F +S K L T + + L +
Sbjct: 242 PYENCL--LV-LL-----NVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 158 -IPSGIGELQNL----QTLDLSFNNLTGQI----PRTLFNIGSL---------NYLFLGN 199
+ + + LD +L ++ PR L I N+ +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 200 NSLSGTLPTQKS-ENLQNIDLS--YNHLSGPFPS------------WVTSNLQ-----MN 239
+ L+ + + S L+ + ++ LS FP W +N
Sbjct: 353 DKLTTII--ESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 240 LVANNFTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADNSS 299
+ ++ + + + SI + NI D+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTFDSDD 463
Query: 300 LSA---SSY----------AVTNTEKWGVSNVGF----FYER---------ENPAYVLNT 333
L Y + + E+ + + F F E+ +LNT
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 334 LGQVTGTRTPELYQTSRISPGSLRYYGL--GLENGPYNVSLLFAETNILDRSTERWESLA 391
L Q+ + Y+ I +Y L + + L E N++ S
Sbjct: 524 LQQL------KFYK-PYICDNDPKYERLVNAILD-----FLPKIEENLI-CSKYT----- 565
Query: 392 RRVFDIYIQGTLRWKDFDISKEA 414
D+ ++ L +D I +EA
Sbjct: 566 ----DL-LRIALMAEDEAIFEEA 583
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 571 YLAPE---YAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN 627
++APE + ++DV++FG+ E+++G+ N + ++I + +
Sbjct: 188 WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII-----EMVGRGS 242
Query: 628 QSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
S L + K R++ C + RP R++A +
Sbjct: 243 LSPDL--SKVRSNCPKRMKRLM---AECLKKKRDERPSFPRILAEI 283
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 33/237 (13%), Positives = 64/237 (27%), Gaps = 34/237 (14%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
+ + + NL+E S + + KL +L L+ G +
Sbjct: 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-M 285
Query: 63 PSTYAKLRNMQTLWASDAPF-TGKIPDFIGNWTKLKSLRFQG----NSFQGPIPSSLSKL 117
P + ++ L A T I L+ L + + + +L
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQL 344
Query: 118 ASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
L I + ++ L AL G Q L+ + + ++
Sbjct: 345 KRLR------IERGADEQGMEDEEGLVSQRGLI-ALAQG--------CQELEYMAVYVSD 389
Query: 178 LTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPT--------QKSENLQNIDLSYN 222
+T + I L N+ + L LP + L+
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 31/133 (23%)
Query: 571 YLAPE---------YAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW 621
+LAPE + ++ +DVF+ G E+ + EW +
Sbjct: 200 HLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAR----------------EWPF 243
Query: 622 NLHENNQSLGLVD----PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677
+ + P L++ + + I L C RP ++++ ML
Sbjct: 244 KTQPAEAIIWQMGTGMKPNLSQIGMGKEISDI--LLFCWAFEQEERPTFTKLMDMLEKLP 301
Query: 678 EVGKVISKPSYLT 690
+ + +S P +
Sbjct: 302 KRNRRLSHPGHFW 314
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 153 LITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
L S+P+ + L L+ NNLT +P L + +L LG N
Sbjct: 20 LTWASLPTAFPV--DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN 65
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE EK+DV+SFGV E+ + + N + + + +
Sbjct: 205 WMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGN------LNPAQVVAAVGFKCKR- 257
Query: 631 GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+ + + +I C P RP + ++ +L
Sbjct: 258 ----LEIPRNLNPQVAAII---EGCWTNEPWKRPSFATIMDLL 293
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 630
++APE ++ +DV+S+GV E+++G I L A+ + N +
Sbjct: 180 WMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRG------IDGLAVAYGVAMNKLA- 232
Query: 631 GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+ + +++ C P RP + ++ L
Sbjct: 233 ----LPIPSTCPEPFAKLM---EDCWNPDPHSRPSFTNILDQL 268
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 755 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.94 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.93 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.93 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.93 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.93 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.93 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.93 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.92 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.92 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.92 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.92 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.89 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.89 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.89 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.89 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.89 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.85 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.83 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.83 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.82 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.81 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.81 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.8 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.74 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.74 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.73 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.72 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.64 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.64 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.63 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.62 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.62 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.59 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.58 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.58 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.57 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.55 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.54 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.54 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.54 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.53 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.53 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.52 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.52 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.52 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.52 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.51 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.51 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.51 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.5 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.5 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.49 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.49 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.49 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.49 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.49 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.49 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.48 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.48 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.48 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.48 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.48 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.48 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.47 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.47 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.46 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.46 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.46 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.46 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.46 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.46 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.46 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.45 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.45 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.44 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.44 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.44 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.44 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.44 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.44 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.43 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.43 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.43 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.43 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.43 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.43 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.43 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.42 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.42 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.42 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.42 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.41 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.41 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.41 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.41 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.41 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.41 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.41 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.4 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.4 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.4 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.4 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.4 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.4 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.39 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.39 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.39 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.39 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.39 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.39 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.39 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.39 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.39 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.38 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.38 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.38 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.38 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.38 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.38 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.38 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.38 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.38 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.37 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.37 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.37 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.37 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.37 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.37 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.37 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.37 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.37 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.36 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.36 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.36 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.36 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.36 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.36 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.36 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.36 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.36 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.35 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.35 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.35 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.35 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.35 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.35 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.35 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.35 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.35 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.34 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.34 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.34 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.34 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.34 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.34 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.34 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.33 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.33 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.33 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.33 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.33 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.33 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.32 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.32 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.32 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.32 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.32 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.31 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.31 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.31 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.31 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.31 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.31 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.31 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.31 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.31 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.3 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.3 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.3 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.3 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.3 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.3 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.3 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.3 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.3 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.29 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.29 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.29 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.29 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.28 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.28 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.28 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.28 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.28 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.28 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.28 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.28 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.28 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.28 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.28 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.27 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.27 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.27 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.27 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.27 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.27 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.27 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.27 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.27 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.27 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.27 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.27 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.27 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.26 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.26 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.26 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.26 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.26 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.26 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.26 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.26 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.25 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.25 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.25 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.25 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.25 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.25 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.25 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.25 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.25 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.25 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.24 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.24 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.24 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.24 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.24 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.24 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.24 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.24 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.24 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.24 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.23 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.23 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.23 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.22 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.22 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.22 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.22 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.22 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.22 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.22 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.21 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.21 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.2 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.2 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.2 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.19 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.19 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.19 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.18 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.18 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.18 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.16 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.16 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.16 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.15 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.15 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.15 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.14 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.14 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.13 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.11 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.11 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.1 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.09 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.09 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.08 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.06 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.05 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.0 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 98.99 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 98.98 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 98.92 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.9 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.85 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.8 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.34 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.29 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.25 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.24 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.22 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.21 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.2 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.12 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.83 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.82 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.57 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.51 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 97.04 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.98 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.93 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.07 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.76 | |
| 2jwp_A | 174 | Malectin, MGC80075; sugar binding, sugar binding p | 95.66 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 92.14 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 90.56 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 88.63 | |
| 2jwa_A | 44 | Receptor tyrosine-protein kinase ERBB-2; transmemb | 84.26 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=307.97 Aligned_cols=248 Identities=31% Similarity=0.464 Sum_probs=216.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++.+|..|+++++|++|+|++|.+++.+|..|+++++|++|+|++|.+.+.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 46888888888888888999999999999999998888988999999999999999998888988999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++++.+|..+.++++|++|+|++|++++.+|..++.+++|+.|++++|.+....+..+..+++|+.|+|++|.+++.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99988899999999999999999999988999999999999999999988878888888999999999999988877765
Q ss_pred cc----------------------------------------------------------------------cCCCCCCE
Q 004413 161 GI----------------------------------------------------------------------GELQNLQT 170 (755)
Q Consensus 161 ~~----------------------------------------------------------------------~~l~~L~~ 170 (755)
.+ +.+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 43 33567889
Q ss_pred EeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCCCCCcccccc---ccccccccccc
Q 004413 171 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPSWVTS---NLQMNLVANNF 245 (755)
Q Consensus 171 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~g~ip~~~~~---~~~l~l~~n~~ 245 (755)
|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..+. ++|+.|||++|+++|.+|..+.. ...|++++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999999999999999999999988654 88999999999999999988772 33589999998
Q ss_pred ccC
Q 004413 246 TFD 248 (755)
Q Consensus 246 ~~~ 248 (755)
++.
T Consensus 717 ~g~ 719 (768)
T 3rgz_A 717 SGP 719 (768)
T ss_dssp EEE
T ss_pred ccc
Confidence 865
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=279.26 Aligned_cols=246 Identities=26% Similarity=0.375 Sum_probs=223.5
Q ss_pred CeEEecCCcCcC--CCchhhcCCCCCCEEEccC-ccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEc
Q 004413 1 MLLSVAHNVFSG--SVPRELGNLKELTVLSFGN-NNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77 (755)
Q Consensus 1 ~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 77 (755)
+.|+|++|++++ .+|..|+++++|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 369999999999 8999999999999999995 9999999999999999999999999999899999999999999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCC-CCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccC
Q 004413 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA-SLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 156 (755)
++|.+++.+|..|.++++|++|++++|.+++.+|..+..++ +|+.|++++|.+....+..+..++ |+.|+|++|.+++
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 99999999999999999999999999999999999999998 999999999998877788888887 9999999999999
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc-
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT- 233 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~- 233 (755)
.+|..+..+++|+.|+|++|.+++.+|. +..+++|+.|+|++|++++.+|..+ .++|+.|+|++|+|+|.+|....
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l 290 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence 9999999999999999999999976665 8889999999999999998888754 48999999999999999998732
Q ss_pred -ccccccccccccccC
Q 004413 234 -SNLQMNLVANNFTFD 248 (755)
Q Consensus 234 -~~~~l~l~~n~~~~~ 248 (755)
....+++.+|+..++
T Consensus 291 ~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGSCGGGTCSSSEEES
T ss_pred cccChHHhcCCCCccC
Confidence 233578888875544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=308.83 Aligned_cols=247 Identities=36% Similarity=0.527 Sum_probs=142.4
Q ss_pred CeEEecCCcCcCCCchhhcCC-CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchh-hhcCCCCCEEEcc
Q 004413 1 MLLSVAHNVFSGSVPRELGNL-KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPST-YAKLRNMQTLWAS 78 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~ 78 (755)
++|+|++|++++.+|..+..+ ++|++|+|++|.+++.+|..|+++++|++|+|++|.+++.+|.. +.++++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 345666666665555555543 56666666666665555555666666666666666555555543 5555555555555
Q ss_pred CCCCCCCcchhhcCC---------------------------CCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCC
Q 004413 79 DAPFTGKIPDFIGNW---------------------------TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 79 ~n~l~~~~p~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 131 (755)
+|.+++.+|..+.++ ++|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 555555555544444 44555555555555555555555566666666665555
Q ss_pred CCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc-
Q 004413 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK- 210 (755)
Q Consensus 132 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~- 210 (755)
...+..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..+
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 5555555566666666666666666666666666666666666666666666666666666666666666665555543
Q ss_pred -CCCCCEEEeecCcCCCCCccccc--c-ccccccccccccc
Q 004413 211 -SENLQNIDLSYNHLSGPFPSWVT--S-NLQMNLVANNFTF 247 (755)
Q Consensus 211 -~~~L~~L~Ls~N~l~g~ip~~~~--~-~~~l~l~~n~~~~ 247 (755)
.++|++|+|++|+++|.+|..+. . ...|++++|++++
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 25666666666666666665554 1 2235666666553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=293.47 Aligned_cols=240 Identities=22% Similarity=0.335 Sum_probs=215.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCcc------------------------------------------------
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNN------------------------------------------------ 33 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~------------------------------------------------ 33 (755)
.|+|++|++.|.+|++|++|++|++|+|++|.
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 68999999999999999999999999999884
Q ss_pred ------------------------------CCCCCcccccCCccCcEEEccccCCCCC-----------------Cchhh
Q 004413 34 ------------------------------FSGTLPPEIGNLAKLEQLYLNSWGAGGE-----------------IPSTY 66 (755)
Q Consensus 34 ------------------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~ 66 (755)
+++ +|..|+++++|++|+|++|.+++. +|..+
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 334 788899999999999999999886 89998
Q ss_pred h--cCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCC-CCC-CCCccccCC------CCCCeeecCCCCCCCCChh
Q 004413 67 A--KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNS-FQG-PIPSSLSKL------ASLDSLRISDIYNVSSSLD 136 (755)
Q Consensus 67 ~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~~~~~~~~ 136 (755)
. ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..+ ++|+.|++++|.+. ..+.
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 8 99999999999999999999999999999999999998 998 789888876 99999999999988 5555
Q ss_pred --hhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCC-CCEEEccCCcCCCCCCcccC--
Q 004413 137 --FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS-LNYLFLGNNSLSGTLPTQKS-- 211 (755)
Q Consensus 137 --~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~-- 211 (755)
.+..+++|+.|++++|.++|.+| .+..+++|+.|+|++|+++ .+|..+..+++ |+.|++++|.++ .+|....
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence 79999999999999999999999 8999999999999999999 88989999999 999999999999 6666432
Q ss_pred --CCCCEEEeecCcCCCCCccccc----------ccccccccccccc
Q 004413 212 --ENLQNIDLSYNHLSGPFPSWVT----------SNLQMNLVANNFT 246 (755)
Q Consensus 212 --~~L~~L~Ls~N~l~g~ip~~~~----------~~~~l~l~~n~~~ 246 (755)
++|+.|++++|.+++.+|..+. ....|++++|.++
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 3799999999999999888765 2335899999887
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-29 Score=264.10 Aligned_cols=225 Identities=24% Similarity=0.376 Sum_probs=211.7
Q ss_pred CeEEecC-CcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAH-NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..|..+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 5799995 999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhcCCC-CCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC
Q 004413 80 APFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI 158 (755)
Q Consensus 80 n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 158 (755)
|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+....+..+..+++|+.|+|++|.+++.+
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 999999999999998 999999999999999999999997 999999999998888889999999999999999999777
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc-cCCCCCEEEeecCc-CCCC
Q 004413 159 PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-KSENLQNIDLSYNH-LSGP 227 (755)
Q Consensus 159 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~L~~L~Ls~N~-l~g~ 227 (755)
+. +..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|.. .+++|+.|++++|+ +.|.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC
Confidence 76 888999999999999999999999999999999999999999988875 34789999999998 6653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=288.77 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=203.1
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEc-cCccCCCC-------------------------------------------
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSF-GNNNFSGT------------------------------------------- 37 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~------------------------------------------- 37 (755)
.|+|++|++.|.+|+.|++|++|++|+| ++|.+.|.
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 5899999999999999999999999999 77754333
Q ss_pred ---------------------------------CcccccCCccCcEEEccccCCCC-----------------CCchhhh
Q 004413 38 ---------------------------------LPPEIGNLAKLEQLYLNSWGAGG-----------------EIPSTYA 67 (755)
Q Consensus 38 ---------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~ 67 (755)
+|..|+++++|++|+|++|.+++ .+|..++
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 78889999999999999999988 3888877
Q ss_pred --cCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCC-CCC-CCCccccCCC-------CCCeeecCCCCCCCCChh
Q 004413 68 --KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNS-FQG-PIPSSLSKLA-------SLDSLRISDIYNVSSSLD 136 (755)
Q Consensus 68 --~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~~~~~~~~ 136 (755)
++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..++ +|+.|++++|.+. ..+.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 99999999999999999999999999999999999998 887 7787665554 9999999999888 4555
Q ss_pred --hhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCC-CCEEEccCCcCCCCCCcccC--
Q 004413 137 --FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGS-LNYLFLGNNSLSGTLPTQKS-- 211 (755)
Q Consensus 137 --~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~-- 211 (755)
.+.++++|+.|+|++|.++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++ .+|....
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 7899999999999999998 788 8899999999999999999 78888999998 999999999998 5665432
Q ss_pred --CCCCEEEeecCcCCCCCcccc---c-----ccccccccccccc
Q 004413 212 --ENLQNIDLSYNHLSGPFPSWV---T-----SNLQMNLVANNFT 246 (755)
Q Consensus 212 --~~L~~L~Ls~N~l~g~ip~~~---~-----~~~~l~l~~n~~~ 246 (755)
++|+.|+|++|+++|.+|... . ....|++++|.++
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 348999999999998777543 1 2235788888877
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=282.06 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=215.5
Q ss_pred CeEEecCCcCcCC-----------------Cchhhc--CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC-CCC
Q 004413 1 MLLSVAHNVFSGS-----------------VPRELG--NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGG 60 (755)
Q Consensus 1 ~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~ 60 (755)
++|+|++|.|++. +|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 5899999999996 999999 99999999999999999999999999999999999998 888
Q ss_pred -CCchhhhcC------CCCCEEEccCCCCCCCcch--hhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCC
Q 004413 61 -EIPSTYAKL------RNMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 61 -~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 131 (755)
.+|..+.++ ++|++|++++|+++ .+|. .++++++|++|++++|.++|.+| .+..+++|+.|++++|.+.
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence 899988887 99999999999999 8998 89999999999999999998999 8999999999999999887
Q ss_pred CCChhhhcCCCC-CCEEEeeCccccCCCCccccCCC--CCCEEeCCCCCCCCCCccccc-------CCCCCCEEEccCCc
Q 004413 132 SSSLDFVMSLKN-LTDLSLRNALITGSIPSGIGELQ--NLQTLDLSFNNLTGQIPRTLF-------NIGSLNYLFLGNNS 201 (755)
Q Consensus 132 ~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~ 201 (755)
..+..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+++.+|..+. .+++|+.|+|++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 55566888999 999999999999 7888887765 899999999999998888888 78899999999999
Q ss_pred CCCCCCccc---CCCCCEEEeecCcCCCCCcccccc----------cc-ccccccccccc
Q 004413 202 LSGTLPTQK---SENLQNIDLSYNHLSGPFPSWVTS----------NL-QMNLVANNFTF 247 (755)
Q Consensus 202 l~~~~p~~~---~~~L~~L~Ls~N~l~g~ip~~~~~----------~~-~l~l~~n~~~~ 247 (755)
++ .+|... .++|+.|+|++|.|+ .+|..... .+ .|+|++|+++.
T Consensus 445 l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 445 IS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp CC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred cC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCc
Confidence 99 455532 489999999999999 77776542 33 58999998873
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=264.34 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=117.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCC-cccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL-PPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 57999999999888999999999999999999987555 56789999999999999999888888999999999999999
Q ss_pred CCCCCCcchh--hcCCCCCcEEEccCCCCCCCCCcc-ccCCCCCCeeecCCCCCCCCChh
Q 004413 80 APFTGKIPDF--IGNWTKLKSLRFQGNSFQGPIPSS-LSKLASLDSLRISDIYNVSSSLD 136 (755)
Q Consensus 80 n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~ 136 (755)
|.+++.++.. |.++++|++|+|++|.+++..|.. +..+++|++|++++|.+....+.
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 9998766655 888999999999999999777776 78899999999998887665443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=262.12 Aligned_cols=248 Identities=19% Similarity=0.199 Sum_probs=197.7
Q ss_pred CeEEecCCcCcCCC-chhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchh--hhcCCCCCEEEc
Q 004413 1 MLLSVAHNVFSGSV-PRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPST--YAKLRNMQTLWA 77 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L 77 (755)
++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+.. |..+++|++|+|
T Consensus 57 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp CEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred cEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence 57999999998666 467899999999999999999888999999999999999999998765554 889999999999
Q ss_pred cCCCCCCCcchh-hcCCCCCcEEEccCCCCCCCCCccccCC----------------------------------CCCCe
Q 004413 78 SDAPFTGKIPDF-IGNWTKLKSLRFQGNSFQGPIPSSLSKL----------------------------------ASLDS 122 (755)
Q Consensus 78 ~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l----------------------------------~~L~~ 122 (755)
++|.+++..|.. +.++++|++|++++|.+++..+..+..+ ++|++
T Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp CSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred CCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence 999999877766 8899999999999999987777655443 56778
Q ss_pred eecCCCCCCCCChhhhc---------------------------------------CCCCCCEEEeeCccccCCCCcccc
Q 004413 123 LRISDIYNVSSSLDFVM---------------------------------------SLKNLTDLSLRNALITGSIPSGIG 163 (755)
Q Consensus 123 L~l~~n~~~~~~~~~l~---------------------------------------~l~~L~~L~L~~n~l~~~~p~~~~ 163 (755)
|++++|.+....+..+. ..++|+.|++++|.+++.+|..+.
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 88887765432222111 125788888888888888888888
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc--c-cccc
Q 004413 164 ELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--S-NLQM 238 (755)
Q Consensus 164 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~--~-~~~l 238 (755)
.+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+..+ .++|++|+|++|++++..|..+. . ...|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 88888888888888887777788888888888888888876655543 47888888888888877777665 2 3358
Q ss_pred cccccccccC
Q 004413 239 NLVANNFTFD 248 (755)
Q Consensus 239 ~l~~n~~~~~ 248 (755)
++++|+++..
T Consensus 377 ~L~~N~l~~~ 386 (455)
T 3v47_A 377 ALDTNQLKSV 386 (455)
T ss_dssp ECCSSCCSCC
T ss_pred ECCCCccccC
Confidence 8888887753
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=248.53 Aligned_cols=208 Identities=23% Similarity=0.303 Sum_probs=149.8
Q ss_pred CCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 004413 21 LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLR 100 (755)
Q Consensus 21 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 100 (755)
.++++.|+|++|.++ .+|..++++++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467777777777776 66666777777777777777776 66777777777777777777777 6677777777777777
Q ss_pred ccCCCCCCCCCccccC---------CCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEE
Q 004413 101 FQGNSFQGPIPSSLSK---------LASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171 (755)
Q Consensus 101 L~~n~l~~~~p~~l~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 171 (755)
|++|.+.+.+|..+.. +++|++|++++|.+. ..+..+..+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 7777666666666543 777777777777666 344556777777777777777773 55567777777777
Q ss_pred eCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc
Q 004413 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 172 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ +++|+.|+|++|++.+.+|.++.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 777777777777777777777777777777777777543 36777777777777777777766
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=261.75 Aligned_cols=248 Identities=23% Similarity=0.172 Sum_probs=199.5
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC
Confidence 57999999999888889999999999999999999888889999999999999999998766677899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.+++..+..|.++++|++|+|++|.+++..+..|..+++|+.|++++|.+.......+..+++|+.|+|++|.+.+..+.
T Consensus 115 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 99987888899999999999999999887788888999999999999888877777777888888888888877765555
Q ss_pred cccCCCC------------------------CCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCC
Q 004413 161 GIGELQN------------------------LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENL 214 (755)
Q Consensus 161 ~~~~l~~------------------------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L 214 (755)
.+..+++ |+.|+|++|++++..+..+..+++|+.|+|++|.+++..+..+ .++|
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence 5555544 4444555556664333567788889999999998886655433 3788
Q ss_pred CEEEeecCcCCCCCccccc--c-cccccccccccccC
Q 004413 215 QNIDLSYNHLSGPFPSWVT--S-NLQMNLVANNFTFD 248 (755)
Q Consensus 215 ~~L~Ls~N~l~g~ip~~~~--~-~~~l~l~~n~~~~~ 248 (755)
+.|+|++|++++..|..+. . ...|++++|.++..
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 8888888888877777665 2 33588888887643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=266.47 Aligned_cols=245 Identities=17% Similarity=0.114 Sum_probs=188.1
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 57999999999888999999999999999999999888999999999999999999999888999999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCC--EEEeeCccccCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLT--DLSLRNALITGSI 158 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~L~~n~l~~~~ 158 (755)
.+++..+..|+++++|++|++++|.+++.....+..+++|++|++++|.+....+..+..+++|+ .|++++|.+++..
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 99976678899999999999999999974444455599999999999998888888888888888 7888888877655
Q ss_pred CccccCC---------------------------------------------------CCCCEEeCCCCCCCCCCccccc
Q 004413 159 PSGIGEL---------------------------------------------------QNLQTLDLSFNNLTGQIPRTLF 187 (755)
Q Consensus 159 p~~~~~l---------------------------------------------------~~L~~L~Ls~N~l~~~~p~~l~ 187 (755)
|..+... .+|+.|++++|.+++..+..+.
T Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~ 275 (606)
T 3t6q_A 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275 (606)
T ss_dssp TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT
T ss_pred hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc
Confidence 5443221 0455566666666655555566
Q ss_pred CCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---ccccccccccccc
Q 004413 188 NIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFT 246 (755)
Q Consensus 188 ~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~ 246 (755)
.+++|+.|++++|.++ .+|... .++|++|++++|.+++..|..+. ....|++++|.+.
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 6666666666666666 344332 25666666666666655454443 2224566666544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=276.24 Aligned_cols=240 Identities=18% Similarity=0.227 Sum_probs=207.5
Q ss_pred CeEEecCCcCcC-----------------CCchhhc--CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC-CCC
Q 004413 1 MLLSVAHNVFSG-----------------SVPRELG--NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGG 60 (755)
Q Consensus 1 ~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~ 60 (755)
++|+|++|+|++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 589999999998 4999988 99999999999999999999999999999999999998 887
Q ss_pred -CCchhhhcCC-------CCCEEEccCCCCCCCcch--hhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCC
Q 004413 61 -EIPSTYAKLR-------NMQTLWASDAPFTGKIPD--FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 61 -~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 130 (755)
.+|..+.+++ +|++|+|++|+++ .+|. .|+++++|++|+|++|.++ .+| .|..+++|+.|++++|.+
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc
Confidence 7888777666 9999999999999 8998 8999999999999999999 888 899999999999999998
Q ss_pred CCCChhhhcCCCC-CCEEEeeCccccCCCCccccCCCC--CCEEeCCCCCCCCCCcccc---c--CCCCCCEEEccCCcC
Q 004413 131 VSSSLDFVMSLKN-LTDLSLRNALITGSIPSGIGELQN--LQTLDLSFNNLTGQIPRTL---F--NIGSLNYLFLGNNSL 202 (755)
Q Consensus 131 ~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l---~--~l~~L~~L~Ls~N~l 202 (755)
. ..+..+..+++ |+.|+|++|.++ .+|..+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|.+
T Consensus 608 ~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 8 55567888898 999999999999 78888877654 9999999999988666322 2 345899999999999
Q ss_pred CCCCCccc---CCCCCEEEeecCcCCCCCcccccc----------cc-ccccccccccc
Q 004413 203 SGTLPTQK---SENLQNIDLSYNHLSGPFPSWVTS----------NL-QMNLVANNFTF 247 (755)
Q Consensus 203 ~~~~p~~~---~~~L~~L~Ls~N~l~g~ip~~~~~----------~~-~l~l~~n~~~~ 247 (755)
+ .+|... .++|+.|+|++|+|+ .+|.+... .+ .|+|++|+++.
T Consensus 686 ~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 686 Q-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp C-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred C-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc
Confidence 9 566543 478999999999998 77776542 33 58899998873
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=240.15 Aligned_cols=219 Identities=26% Similarity=0.328 Sum_probs=116.0
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+. ++|++|++++|.
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~ 132 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENE 132 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSC
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCc
Confidence 4555555555544445555555555555555555444555555555555555555554 2333222 455555555555
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCC--CCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQG--PIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
+++..+..|.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+....... .++|+.|++++|.+++..+
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECT
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCH
Confidence 554444455555555555555555542 34445555555555555555544332211 1455555555555555555
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGP 227 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ 227 (755)
..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|+++ .+|... .++|++|++++|+|++.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 55555555666666555555444445555555566666655555 333322 24555566665555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=239.79 Aligned_cols=225 Identities=21% Similarity=0.185 Sum_probs=202.1
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+++.++++++ .+|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 5788888887 566544 4799999999999997777889999999999999999988888999999999999999997
Q ss_pred -CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 82 -FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 82 -l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.......+..+++|+.|+|++|.+++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766688899999999999999999988888999999999999999999888878899999999999999999977777
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc--cCCCCCEEEeecCcCCCCCc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~L~~L~Ls~N~l~g~ip 229 (755)
.+..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..+.. ..++|+.|+|++|++....+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 8999999999999999999888999999999999999999999755442 34899999999999987655
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=239.14 Aligned_cols=220 Identities=20% Similarity=0.246 Sum_probs=204.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|+|++|+++ .+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|.+. .+|..|.++++|++|+|++|
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 47999999999 88888999999999999999999 89999999999999999999998 78999999999999999999
Q ss_pred CCCCCcchhhcC---------CCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeC
Q 004413 81 PFTGKIPDFIGN---------WTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRN 151 (755)
Q Consensus 81 ~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 151 (755)
++.+.+|..+.. +++|++|+|++|.++ .+|..+..+++|++|++++|.+... +..+..+++|+.|+|++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcC
Confidence 999899987764 999999999999999 8899999999999999999988854 44689999999999999
Q ss_pred ccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCC
Q 004413 152 ALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLS 225 (755)
Q Consensus 152 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~ 225 (755)
|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+. ++|+.+++..|.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998654 88999998887765
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=238.37 Aligned_cols=243 Identities=21% Similarity=0.195 Sum_probs=209.3
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCC--CchhhhcCCCCCEEEccC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE--IPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~ 79 (755)
.++.++++++ .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 5788888887 5666554 6999999999999854445589999999999999998733 367788899999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCCCCCCCCC-ccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccC-C
Q 004413 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG-S 157 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 157 (755)
|.++ .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+....+..+..+++|++|+|++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 9988 577789999999999999999986554 578999999999999999888777888999999999999999987 5
Q ss_pred CCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc--cCCCCCEEEeecCcCCCCCcccccc-
Q 004413 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTS- 234 (755)
Q Consensus 158 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~L~~L~Ls~N~l~g~ip~~~~~- 234 (755)
+|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..+.. ..++|+.|+|++|++++..|..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 7889999999999999999999877889999999999999999999766543 3489999999999999988877652
Q ss_pred --c-ccccccccccccC
Q 004413 235 --N-LQMNLVANNFTFD 248 (755)
Q Consensus 235 --~-~~l~l~~n~~~~~ 248 (755)
. ..|++++|+++++
T Consensus 247 ~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTCCEECS
T ss_pred hccCCEEEccCCCeecc
Confidence 2 3589999998765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=237.47 Aligned_cols=217 Identities=24% Similarity=0.291 Sum_probs=102.0
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+. .+|..+. ++|++|++++|.
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc
Confidence 3444444444444444444444444444444444444444444444444444444443 2222222 444444444444
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCC--CCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQ--GPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
++...+..|.++++|++|++++|.++ +..+..+..+ +|+.|++++|.+....... .++|+.|++++|.+++..+
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCT
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCH
Confidence 44333333444444444444444443 1333344444 4444444444443322111 1345555555555555444
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSG 226 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g 226 (755)
..+..+++|+.|+|++|++++..+..+..+++|+.|++++|+++ .+|... .++|+.|++++|+|++
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 55555555555555555555444445555555555555555555 333322 2455555555555553
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=239.71 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=201.5
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCC--CCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEcc
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSG--TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWAS 78 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 78 (755)
++|+|++|+++...+..|.++++|++|+|++|.++. ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECC
Confidence 579999999995555568999999999999999973 23677888999999999999986 467779999999999999
Q ss_pred CCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCC-CChhhhcCCCCCCEEEeeCccccC
Q 004413 79 DAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS-SSLDFVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 79 ~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~ 156 (755)
+|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.+++
T Consensus 110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 999986554 578999999999999999998888899999999999999998876 456678899999999999999998
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC---CCCCEEEeecCcCCCCC
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS---ENLQNIDLSYNHLSGPF 228 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~Ls~N~l~g~i 228 (755)
..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+.... ++|++|+|++|++++..
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 8899999999999999999999987777899999999999999999988776543 58999999999998754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=244.33 Aligned_cols=256 Identities=18% Similarity=0.196 Sum_probs=181.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|++++|.+....+..+.++++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 35677777776444444667777777777777776655566777777777777777777666666777777777777777
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcC--------------------
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMS-------------------- 140 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-------------------- 140 (755)
.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.......+..
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcc
Confidence 777433344567777777777777777666666777777777777777665443322221
Q ss_pred -----------------CCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 141 -----------------LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 141 -----------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
.++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|+++
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 23567777777777643 46788999999999999999888899999999999999999998
Q ss_pred CCCCcc-cCCCCCEEEeecCcCCCCCccccc---ccccccccccccccCCCCCCCCCCcccc
Q 004413 204 GTLPTQ-KSENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFDRSNISVFPGLHCL 261 (755)
Q Consensus 204 ~~~p~~-~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~~~~~~~~~~l~~l 261 (755)
+..... ..++|+.|+|++|+++ .+|..+. ....|++++|+++.. ....++.+..+
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~L~~L 344 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNL 344 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--CCCTTCCCSEE
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee--CchhhccCCEE
Confidence 643332 3589999999999998 5666554 334689999998744 34445555444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=259.66 Aligned_cols=247 Identities=21% Similarity=0.196 Sum_probs=218.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCch-hhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS-TYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~ 79 (755)
++|+|++|+++ .+|..+.++++|++|+|++|.+++..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 57999999998 7888899999999999999999987788999999999999999999877765 589999999999999
Q ss_pred CCCCCCc--chhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChh-hhcCCCCCCEEEeeCccccC
Q 004413 80 APFTGKI--PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD-FVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 80 n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~ 156 (755)
|.+++.. +..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.+
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 9998655 77899999999999999999988889999999999999999988766554 48899999999999999998
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCC---CcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccc
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQ---IPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSW 231 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~ 231 (755)
..|..+..+++|+.|+|++|++++. .+..+..+++|+.|++++|.+++..|..+ .++|+.|+|++|++++.+|..
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 8999999999999999999999862 33678899999999999999998777654 489999999999999988888
Q ss_pred cc--ccccccccccccccC
Q 004413 232 VT--SNLQMNLVANNFTFD 248 (755)
Q Consensus 232 ~~--~~~~l~l~~n~~~~~ 248 (755)
+. ..+.|++++|+++..
T Consensus 520 l~~l~~L~L~L~~N~l~~~ 538 (606)
T 3t6q_A 520 LSHLKGIYLNLASNHISII 538 (606)
T ss_dssp GTTCCSCEEECCSSCCCCC
T ss_pred hCcccccEEECcCCccccc
Confidence 77 334789999998743
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=247.89 Aligned_cols=242 Identities=21% Similarity=0.203 Sum_probs=201.1
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4566667776 5676554 689999999999998888889999999999999999988888889999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCC-CCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY-NVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++...+..|.++++|++|+|++|.++...+..|..+++|+.|++++|+ +.......+.++++|+.|+|++|.+++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 997666778899999999999999986666688899999999999854 4444455788899999999999999854 4
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---cc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SN 235 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~ 235 (755)
.+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+ .++|+.|+|++|+|++..+..+. ..
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 57888999999999999998888899999999999999999997766544 37899999999999865555544 23
Q ss_pred ccccccccccccC
Q 004413 236 LQMNLVANNFTFD 248 (755)
Q Consensus 236 ~~l~l~~n~~~~~ 248 (755)
..|+|++|++.|+
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 3588999998876
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=257.73 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=178.6
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|++++|.+....+..+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence 46666666665444556666677777777776666555566667777777777777666666666667777777777776
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcC---------------------
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMS--------------------- 140 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--------------------- 140 (755)
+++..+..|+++++|++|+|++|.+++..|..|..+++|++|++++|.+.......+..
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 66444444566677777777777666666666666667777777666655443222211
Q ss_pred ----------------CCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 141 ----------------LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 141 ----------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
.++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 2357777777777775 3678899999999999999998889999999999999999999997
Q ss_pred CCCcc-cCCCCCEEEeecCcCCCCCccccc---ccccccccccccccCCCCCCCCCCcccc
Q 004413 205 TLPTQ-KSENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFDRSNISVFPGLHCL 261 (755)
Q Consensus 205 ~~p~~-~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~~~~~~~~~~l~~l 261 (755)
..+.. .+++|+.|+|++|.++ .+|.++. ....|++++|.++.. ++..++.+..+
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~L~~L 350 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNL 350 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--CCCTTCCCSEE
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc--ChhhcCCCCEE
Confidence 53332 2589999999999998 6777665 334689999998754 34455555444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=256.21 Aligned_cols=244 Identities=18% Similarity=0.150 Sum_probs=202.1
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.|++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.++...+..|.++++|++|+|++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 57999999999888889999999999999999999888888999999999999999998766667899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCC-------------------------------------CCCCee
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL-------------------------------------ASLDSL 123 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-------------------------------------~~L~~L 123 (755)
.+++..|..|+++++|++|+|++|.+++.....+..+ ++|+.|
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L 237 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEE
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEE
Confidence 9998888889999999999999999985432222221 234445
Q ss_pred ecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 124 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
++++|.+.. +..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++
T Consensus 238 ~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 555554443 3568889999999999999999999999999999999999999995 6777788999999999999999
Q ss_pred CCCCccc--CCCCCEEEeecCcCCCCCcccccccccccccccccccC
Q 004413 204 GTLPTQK--SENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 248 (755)
Q Consensus 204 ~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~~~ 248 (755)
. +|... +++|+.|+|++|.|++..+..+.....|++++|+++++
T Consensus 315 ~-i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 H-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp C-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred c-cCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 4 55433 48999999999999866444444455689999998865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=246.35 Aligned_cols=242 Identities=21% Similarity=0.205 Sum_probs=202.2
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.++.++++++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+....+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4566677776 6776665 689999999999987778889999999999999999988878889999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCC-CCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYN-VSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~-~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++...+..|.++++|++|+|++|.++...+..|..+++|+.|++++|+. .......+.++++|+.|+|++|.++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 9966666789999999999999999876677889999999999998554 4444557888999999999999998 455
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---cc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SN 235 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~ 235 (755)
.+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+ .++|+.|+|++|+|++..+..+. ..
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 47888999999999999998888899999999999999999997766543 37899999999999966655544 23
Q ss_pred ccccccccccccC
Q 004413 236 LQMNLVANNFTFD 248 (755)
Q Consensus 236 ~~l~l~~n~~~~~ 248 (755)
..|+|++|++.|+
T Consensus 282 ~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 282 ERIHLHHNPWNCN 294 (440)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEcCCCCccCC
Confidence 3588999998876
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=231.29 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=179.3
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 566544 468899999998888777778888899999999999888777888888899999999988
Q ss_pred C-CCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 105 S-FQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 105 ~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
. ++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776667788888999999999888887777788888899999999998887777778888899999999998886555
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc---ccccccccccccccC
Q 004413 184 RTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFD 248 (755)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~ 248 (755)
..+..+++|+.|++++|.+++..|..+ .++|+.|+|++|.|++..+..+. ....|++++|+++++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 678888899999999998887766554 37889999999999876655554 233588888888765
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=248.81 Aligned_cols=243 Identities=20% Similarity=0.195 Sum_probs=215.3
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.++.++++++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 5677888887 6776664 699999999999998888899999999999999999998889999999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++...+..|.++++|++|+|++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.|+|++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99666667899999999999999999888899999999999999999998888888999999999999999999777778
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCCCCCcc-ccc---cc
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPS-WVT---SN 235 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~g~ip~-~~~---~~ 235 (755)
+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+.+.++.... .+|+.|+|++|.|++ +|. .+. ..
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCcccc
Confidence 99999999999999999987778899999999999999998887776544 589999999999994 553 333 33
Q ss_pred ccccccccccccC
Q 004413 236 LQMNLVANNFTFD 248 (755)
Q Consensus 236 ~~l~l~~n~~~~~ 248 (755)
..|+|++|.++..
T Consensus 251 ~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 251 RFLNLSYNPISTI 263 (477)
T ss_dssp CEEECCSSCCCEE
T ss_pred CeeECCCCcCCcc
Confidence 4689999987643
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=253.34 Aligned_cols=104 Identities=21% Similarity=0.181 Sum_probs=64.3
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|++|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSS
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCC
Confidence 35666666666655566666666666666666666555666666666666666666665 34433 5666666666666
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCC
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
.+++ .+|..|+++++|++|++++|.++
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccccccchhhhccCCcceEEEecCcccc
Confidence 6654 35566666666666666666554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=252.84 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=186.5
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCC-CCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG-EIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++|++++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|++++
T Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE
T ss_pred cEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecC
Confidence 58999999999888999999999999999999998 57766 89999999999999987 5788999999999999999
Q ss_pred CCCCCCcchhhcCCCCC--cEEEccCCCC--CCCCCccccCCC-------------------------------------
Q 004413 80 APFTGKIPDFIGNWTKL--KSLRFQGNSF--QGPIPSSLSKLA------------------------------------- 118 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~------------------------------------- 118 (755)
|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 125 n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 125 THLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp SSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred cccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 98864 234444444 5555555555 333333332211
Q ss_pred ----------------------------------------------CCCeeecCCCCCCCCChhh---------------
Q 004413 119 ----------------------------------------------SLDSLRISDIYNVSSSLDF--------------- 137 (755)
Q Consensus 119 ----------------------------------------------~L~~L~l~~n~~~~~~~~~--------------- 137 (755)
+|++|++++|.+....+..
T Consensus 202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred cccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 3333333333322111000
Q ss_pred --------------------------------------hcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCC
Q 004413 138 --------------------------------------VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179 (755)
Q Consensus 138 --------------------------------------l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 179 (755)
...+++|++|++++|.+++.+|..+..+++|+.|+|++|+++
T Consensus 282 ~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp EEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred cccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 157788999999999999888888999999999999999998
Q ss_pred C--CCcccccCCCCCCEEEccCCcCCCCCCcc---cCCCCCEEEeecCcCCCCCccccc-ccccccccccccccCCCCCC
Q 004413 180 G--QIPRTLFNIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVT-SNLQMNLVANNFTFDRSNIS 253 (755)
Q Consensus 180 ~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~~L~~L~Ls~N~l~g~ip~~~~-~~~~l~l~~n~~~~~~~~~~ 253 (755)
+ .+|..+..+++|+.|++++|.+++.+|.. ..++|+.|++++|++++.+|..+. ....|++++|+++.-+....
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~ 441 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV 441 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh
Confidence 6 55677888999999999999998756643 237889999999999888887775 34468888888874332223
Q ss_pred CCCCcccc
Q 004413 254 VFPGLHCL 261 (755)
Q Consensus 254 ~~~~l~~l 261 (755)
.++.+..+
T Consensus 442 ~l~~L~~L 449 (520)
T 2z7x_B 442 KLEALQEL 449 (520)
T ss_dssp GCTTCCEE
T ss_pred cCCCCCEE
Confidence 34444444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=256.86 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=121.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 57888888888888888888888999999888888777788888888888888888888777777888888888888888
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCCCCCC-ccccCCCCCCeeecCCCCCCCCChhhh--------------------
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLDSLRISDIYNVSSSLDFV-------------------- 138 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l-------------------- 138 (755)
.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|.+....+..+
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence 8875 356678888888888888887444444 567778888888888777665444333
Q ss_pred ----cCCCCCCEEEeeCccccC
Q 004413 139 ----MSLKNLTDLSLRNALITG 156 (755)
Q Consensus 139 ----~~l~~L~~L~L~~n~l~~ 156 (755)
..+++|++|++++|.+++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhHhhcccccEEEccCCcccc
Confidence 346677777777777765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=248.44 Aligned_cols=225 Identities=17% Similarity=0.137 Sum_probs=202.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+|++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 57999999999998999999999999999999999888899999999999999999998877778999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCC-CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGN-SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
.++...+..|.++++|++|++++| .+....+..|..+++|+.|++++|.+... +.+..+++|+.|+|++|.+++..|
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCc
Confidence 999666678999999999999995 55533444689999999999999988765 458889999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGP 227 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ 227 (755)
..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..+..+ .++|+.|+|++|++...
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 999999999999999999998888999999999999999999996655433 48999999999998753
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=257.13 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=119.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 57899999999888888999999999999999998777888999999999999999998888889999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCC-CCCccccCCCCCCeeecCCCCCCCCChh
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYNVSSSLD 136 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 136 (755)
.+++..+..|+++++|++|++++|.+++ .+|..+.++++|++|++++|.+....+.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 9987777789999999999999999985 5688999999999999998887655443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=258.40 Aligned_cols=243 Identities=20% Similarity=0.164 Sum_probs=177.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+.+..+..|+++++|++|++++|
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC
Confidence 57999999999888889999999999999999999888999999999999999999998877788999999999999999
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCCCCCCccccCCC---------------------------CCCeeecCCCCCC-
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA---------------------------SLDSLRISDIYNV- 131 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---------------------------~L~~L~l~~n~~~- 131 (755)
.+++ .+|..|+++++|++|++++|.+++..+..+..+. +|+.|++++|.+.
T Consensus 139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 218 (606)
T ss_dssp CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCH
T ss_pred cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccch
Confidence 9986 6799999999999999999988865555443332 2233333333211
Q ss_pred --------------------------------------------------------------------------------
Q 004413 132 -------------------------------------------------------------------------------- 131 (755)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (755)
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 298 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC
T ss_pred hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch
Confidence
Q ss_pred CCChhhhcCCCCCCEEEeeCccccCCCCc--------------------cccCCCCCCEEeCCCCCCCCC--CcccccCC
Q 004413 132 SSSLDFVMSLKNLTDLSLRNALITGSIPS--------------------GIGELQNLQTLDLSFNNLTGQ--IPRTLFNI 189 (755)
Q Consensus 132 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~--------------------~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l 189 (755)
.. +.+..+++|+.|++++|.+ +.+|. .+..+++|+.|++++|.+++. ++..+..+
T Consensus 299 ~l--~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 299 YL--EDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CC--CCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred hh--hhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 00 0223334455555555554 23331 344567777888888887754 36777888
Q ss_pred CCCCEEEccCCcCCCCCCcc--cCCCCCEEEeecCcCCCCCc-cccc---cccccccccccccc
Q 004413 190 GSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP-SWVT---SNLQMNLVANNFTF 247 (755)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~--~~~~L~~L~Ls~N~l~g~ip-~~~~---~~~~l~l~~n~~~~ 247 (755)
++|+.|++++|.+++.. .. ..++|+.|++++|++++..| ..+. ....|++++|.++.
T Consensus 376 ~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 88888888888877533 32 23788888888888887766 3333 23357788887764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=256.35 Aligned_cols=233 Identities=19% Similarity=0.176 Sum_probs=151.2
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++...+..|.++++|++|++++|
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence 45777777777666666777777777777777777666777777777777777777776554456777777777777777
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhc--CCCCCCEEEeeCccccCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM--SLKNLTDLSLRNALITGSI 158 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~ 158 (755)
.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+....+..+. .+++|+.|++++|.+++..
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 77765556677777777777777777766666677777777777777766665555433 4466777777777777666
Q ss_pred CccccCC---------------------------CCCCEEeCCCCCCCCCCcccccCCCC--CCEEEccCCcCCCCCCcc
Q 004413 159 PSGIGEL---------------------------QNLQTLDLSFNNLTGQIPRTLFNIGS--LNYLFLGNNSLSGTLPTQ 209 (755)
Q Consensus 159 p~~~~~l---------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~ 209 (755)
|..+..+ ++|+.|++++|.+++..|..+..++. |+.|++++|.+++..+..
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 6555433 34555555555555555555555433 666666666665544432
Q ss_pred c--CCCCCEEEeecCcCCCCCccccc
Q 004413 210 K--SENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 210 ~--~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
+ .++|++|++++|.+++.+|..+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred ccCcccccEeeCCCCccCccChhhhc
Confidence 2 25566666666666655554443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=245.38 Aligned_cols=224 Identities=18% Similarity=0.164 Sum_probs=201.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 57999999999888899999999999999999999888889999999999999999998777778999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCC-CCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNS-FQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
.++...+..|.++++|++|+|++|. +....+..|..+++|++|++++|.+... +.+..+++|+.|+|++|.+++..|
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEECT
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCccCccCh
Confidence 9997667789999999999999954 4433445789999999999999988754 358889999999999999999889
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSG 226 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g 226 (755)
..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+ .++|+.|+|++|++..
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999999998888899999999999999999996655433 4899999999999864
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=264.19 Aligned_cols=244 Identities=23% Similarity=0.261 Sum_probs=165.0
Q ss_pred CeEEecCCcCcCCC-chhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchh--hhcCCCCCEEEc
Q 004413 1 MLLSVAHNVFSGSV-PRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPST--YAKLRNMQTLWA 77 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L 77 (755)
++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. |.++++|++|+|
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 35666666554444 455666666666666666666555666666666666666666665544443 556666666666
Q ss_pred cCCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCcccc--------------------------C--------------
Q 004413 78 SDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLS--------------------------K-------------- 116 (755)
Q Consensus 78 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------------------------~-------------- 116 (755)
++|.+++..+ ..|+++++|++|+|++|.+++..+..+. .
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 210 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB
T ss_pred CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEe
Confidence 6666554433 3455666666666655555433222111 1
Q ss_pred ------------------------------------------------------CCCCCeeecCCCCCCCCChhhhcCCC
Q 004413 117 ------------------------------------------------------LASLDSLRISDIYNVSSSLDFVMSLK 142 (755)
Q Consensus 117 ------------------------------------------------------l~~L~~L~l~~n~~~~~~~~~l~~l~ 142 (755)
.++|+.|++++|.+....+..+..++
T Consensus 211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 290 (844)
T 3j0a_A 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290 (844)
T ss_dssp CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence 13456666666666555666788999
Q ss_pred CCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEee
Q 004413 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLS 220 (755)
Q Consensus 143 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls 220 (755)
+|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..+..+ .++|+.|+|+
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECC
Confidence 99999999999998889899999999999999999998888899999999999999999986665433 4899999999
Q ss_pred cCcCCCCCcccccccccccccccccc
Q 004413 221 YNHLSGPFPSWVTSNLQMNLVANNFT 246 (755)
Q Consensus 221 ~N~l~g~ip~~~~~~~~l~l~~n~~~ 246 (755)
+|.+++ ++. +.....+++++|+++
T Consensus 371 ~N~l~~-i~~-~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 371 DNALTT-IHF-IPSIPDIFLSGNKLV 394 (844)
T ss_dssp TCCSCC-CSS-CCSCSEEEEESCCCC
T ss_pred CCCCCc-ccC-CCCcchhccCCCCcc
Confidence 999984 332 223334666666665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=251.29 Aligned_cols=105 Identities=23% Similarity=0.172 Sum_probs=70.0
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|.. .+++|++|++++|
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSS
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCC
Confidence 35677777777666666777777777777777776666666777777777777777765 34444 5667777777777
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCCC
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQG 108 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~ 108 (755)
++++ .+|..|+++++|++|++++|.+++
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CccccCchHhhcccCcccEEecCCCcccc
Confidence 7664 334666777777777777766654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=230.26 Aligned_cols=236 Identities=20% Similarity=0.234 Sum_probs=202.0
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence 58999999999988999999999999999999998 6676655 79999999999999888888999999999999999
Q ss_pred CCCC--CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC
Q 004413 81 PFTG--KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI 158 (755)
Q Consensus 81 ~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 158 (755)
.+.. ..+..|.++++|++|++++|.++ .+|..+. ++|++|++++|.+....+..+..+++|+.|+|++|.+++..
T Consensus 156 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred cCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 9963 67788999999999999999998 4666554 89999999999998888889999999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--------CCCCCEEEeecCcCCC--CC
Q 004413 159 PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--------SENLQNIDLSYNHLSG--PF 228 (755)
Q Consensus 159 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--------~~~L~~L~Ls~N~l~g--~i 228 (755)
+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+ ...++.|++++|++.. ..
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 888999999999999999999 789899999999999999999996554433 2578899999999863 23
Q ss_pred ccccc---cccccccccc
Q 004413 229 PSWVT---SNLQMNLVAN 243 (755)
Q Consensus 229 p~~~~---~~~~l~l~~n 243 (755)
|..+. ....++|++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 33333 1223555555
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-26 Score=239.83 Aligned_cols=238 Identities=21% Similarity=0.247 Sum_probs=163.2
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCC-CCCccccc-------CCccCcEEEccccCCCCCCchhh--hcCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFS-GTLPPEIG-------NLAKLEQLYLNSWGAGGEIPSTY--AKLRN 71 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~ 71 (755)
+|++++|.+ .+|..+... |+.|+|++|.+. ..+|..+. ++++|++|+|++|.+++.+|..+ ..+++
T Consensus 47 ~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 47 YLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp THHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred eEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 356677777 667666644 777777777773 44565555 67778888888888777777665 77778
Q ss_pred CCEEEccCCCCCCCcchhhcCC-----CCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCC--Chhhh--cCCC
Q 004413 72 MQTLWASDAPFTGKIPDFIGNW-----TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSS--SLDFV--MSLK 142 (755)
Q Consensus 72 L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~ 142 (755)
|++|+|++|++++. |..++.+ ++|++|+|++|++++..+..+..+++|++|++++|.+... .+..+ ..++
T Consensus 123 L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 201 (312)
T 1wwl_A 123 LNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201 (312)
T ss_dssp CSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred ccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence 88888888877765 6666665 7788888888887766667777788888888877765432 12222 6777
Q ss_pred CCCEEEeeCccccCC--CC-ccccCCCCCCEEeCCCCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEE
Q 004413 143 NLTDLSLRNALITGS--IP-SGIGELQNLQTLDLSFNNLTGQIP-RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID 218 (755)
Q Consensus 143 ~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~ 218 (755)
+|++|+|++|.+++. ++ ..+..+++|+.|+|++|++++..| ..+..+++|+.|+|++|.|+ .+|....++|++||
T Consensus 202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~ 280 (312)
T 1wwl_A 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLD 280 (312)
T ss_dssp TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEE
T ss_pred CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEE
Confidence 788888888877621 12 234566788888888888876554 34556777888888888877 55655557788888
Q ss_pred eecCcCCCCCccccc--c-ccccccccccccc
Q 004413 219 LSYNHLSGPFPSWVT--S-NLQMNLVANNFTF 247 (755)
Q Consensus 219 Ls~N~l~g~ip~~~~--~-~~~l~l~~n~~~~ 247 (755)
|++|+|++. |. +. . ...|++++|+++.
T Consensus 281 Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 281 LSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888888765 54 33 2 2347777777653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=253.15 Aligned_cols=247 Identities=21% Similarity=0.204 Sum_probs=195.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.+++..|..|+++++|++|+|++|.++...+..|+++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 57999999999999999999999999999999998655557999999999999999998877788999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCcccc--CCCCCCeeecCCCCCCCCChhhhcCC-----------------
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS--KLASLDSLRISDIYNVSSSLDFVMSL----------------- 141 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l----------------- 141 (755)
.+++..+..++++++|++|++++|.+++..+..+. .+++|+.|++++|.+....+..+..+
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 211 (680)
T 1ziw_A 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211 (680)
T ss_dssp CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH
T ss_pred cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhh
Confidence 99988888899999999999999999877666554 56889999999988776655544332
Q ss_pred ----------CCCCEEEeeCccccCCCCccccCCCC--CCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc
Q 004413 142 ----------KNLTDLSLRNALITGSIPSGIGELQN--LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ 209 (755)
Q Consensus 142 ----------~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 209 (755)
++|+.|++++|.+++..|..+..++. |+.|+|++|++++..+..+..+++|+.|++++|.+++..|..
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh
Confidence 56777888888888777777777654 888888888888777778888888888888888888766654
Q ss_pred c--CCCCCEEEeecCcCCCC-----Ccc----ccc---cccccccccccccc
Q 004413 210 K--SENLQNIDLSYNHLSGP-----FPS----WVT---SNLQMNLVANNFTF 247 (755)
Q Consensus 210 ~--~~~L~~L~Ls~N~l~g~-----ip~----~~~---~~~~l~l~~n~~~~ 247 (755)
+ .++|+.|++++|...+. +|. .+. ....|++++|.++.
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 3 36777777777665542 332 111 22346777777654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-25 Score=265.18 Aligned_cols=242 Identities=19% Similarity=0.174 Sum_probs=167.2
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.+.+..|..|..+++|++|++++|
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 46899999999888888999999999999999998888888999999999999999998888888999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCC--------------------CCCC-hhhhc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYN--------------------VSSS-LDFVM 139 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~--------------------~~~~-~~~l~ 139 (755)
.+....+..|.++++|++|+|++|.+++ ++ .+++|+.|++++|.+ .... ...+.
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred CCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 9987777788889999999999998873 22 134444444444333 2221 12344
Q ss_pred CCCCCCEEEeeCccccCCCCc-cccCCCCCCEEeCCCCCCC-----CCCcccccCCCCCCEEEccCCcCCCCCCccc--C
Q 004413 140 SLKNLTDLSLRNALITGSIPS-GIGELQNLQTLDLSFNNLT-----GQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--S 211 (755)
Q Consensus 140 ~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~ 211 (755)
.+++|+.|+|++|.+++..+. .+..+++|+.|+|++|.++ +..+..+..+++|+.|+|++|.+++..|..+ .
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 667777777777777644332 2344566666666666665 2333445556666666666666665555432 3
Q ss_pred CCCCEEEeecCcCCCCCcccccccc-ccccccccccc
Q 004413 212 ENLQNIDLSYNHLSGPFPSWVTSNL-QMNLVANNFTF 247 (755)
Q Consensus 212 ~~L~~L~Ls~N~l~g~ip~~~~~~~-~l~l~~n~~~~ 247 (755)
++|+.|+|++|+|++..|..+...+ .|++++|+++.
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA 540 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCC
T ss_pred hhhheeECCCCCCCccChhhhhccccEEECCCCcCCC
Confidence 5666666666666654444443222 46666666553
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=249.34 Aligned_cols=255 Identities=21% Similarity=0.181 Sum_probs=189.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCC-CCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG-EIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++|+|++..|..|.++++|++|+|++|.++ .+|.. .+++|++|+|++|.+.+ .+|..|.++++|++|++++
T Consensus 79 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred cEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCC
Confidence 58999999999988999999999999999999998 67766 89999999999999987 4578999999999999999
Q ss_pred CCCCCCcchhhcCCCCC--cEEEccCCCC--CCCCCccccCCC-------------------------------------
Q 004413 80 APFTGKIPDFIGNWTKL--KSLRFQGNSF--QGPIPSSLSKLA------------------------------------- 118 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~------------------------------------- 118 (755)
|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 156 n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 156 AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred CccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 998753 33444444 7777777777 555554444322
Q ss_pred --------------------------------------------CCCeeecCCCCCCCCChhh-----------------
Q 004413 119 --------------------------------------------SLDSLRISDIYNVSSSLDF----------------- 137 (755)
Q Consensus 119 --------------------------------------------~L~~L~l~~n~~~~~~~~~----------------- 137 (755)
+|++|++++|.+....+..
T Consensus 233 ~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred cccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 4444444444433211111
Q ss_pred ------------------------------------hcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCC-
Q 004413 138 ------------------------------------VMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG- 180 (755)
Q Consensus 138 ------------------------------------l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~- 180 (755)
...+++|++|++++|.+++.+|..+..+++|+.|+|++|++++
T Consensus 313 ~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp EECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred ccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 1567888899999999888888888888999999999998885
Q ss_pred -CCcccccCCCCCCEEEccCCcCCCCCCccc---CCCCCEEEeecCcCCCCCccccc-ccccccccccccccCCCCCCCC
Q 004413 181 -QIPRTLFNIGSLNYLFLGNNSLSGTLPTQK---SENLQNIDLSYNHLSGPFPSWVT-SNLQMNLVANNFTFDRSNISVF 255 (755)
Q Consensus 181 -~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~~L~~L~Ls~N~l~g~ip~~~~-~~~~l~l~~n~~~~~~~~~~~~ 255 (755)
.+|..+..+++|+.|++++|.+++.+|... .++|+.|++++|++++.+|..+. ....|++++|+++.-+.....+
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l 472 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL 472 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSS
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCC
Confidence 234567888889999999998887566542 37888888888888888887775 4446888888877433333334
Q ss_pred CCcccc
Q 004413 256 PGLHCL 261 (755)
Q Consensus 256 ~~l~~l 261 (755)
+.+..+
T Consensus 473 ~~L~~L 478 (562)
T 3a79_B 473 QALQEL 478 (562)
T ss_dssp CCCSEE
T ss_pred CCCCEE
Confidence 444444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=229.13 Aligned_cols=235 Identities=21% Similarity=0.298 Sum_probs=200.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|+++++|++|+|++|.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|
T Consensus 81 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 58999999999988999999999999999999998 6776665 89999999999998777778999999999999999
Q ss_pred CCC--CCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC
Q 004413 81 PFT--GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI 158 (755)
Q Consensus 81 ~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 158 (755)
.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+....+..+..+++|+.|+|++|.+++..
T Consensus 158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 158 PLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred ccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 996 3677888888 99999999999994 666554 79999999999999888888999999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--------CCCCCEEEeecCcCC--CCC
Q 004413 159 PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--------SENLQNIDLSYNHLS--GPF 228 (755)
Q Consensus 159 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--------~~~L~~L~Ls~N~l~--g~i 228 (755)
+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..+ ...|+.|++++|++. +..
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 889999999999999999999 789899999999999999999996554432 256899999999987 444
Q ss_pred ccccc--c-ccccccccc
Q 004413 229 PSWVT--S-NLQMNLVAN 243 (755)
Q Consensus 229 p~~~~--~-~~~l~l~~n 243 (755)
|..+. . ...+++++|
T Consensus 313 ~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGGTTBCCSTTEEC---
T ss_pred cccccccchhhhhhcccc
Confidence 44443 1 223555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-26 Score=241.51 Aligned_cols=221 Identities=21% Similarity=0.252 Sum_probs=130.7
Q ss_pred eEEecCCcC-cCCCchhhc-------CCCCCCEEEccCccCCCCCcccc--cCCccCcEEEccccCCCCCCchhhhcC--
Q 004413 2 LLSVAHNVF-SGSVPRELG-------NLKELTVLSFGNNNFSGTLPPEI--GNLAKLEQLYLNSWGAGGEIPSTYAKL-- 69 (755)
Q Consensus 2 ~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l-- 69 (755)
+|+|++|.+ ...+|..+. ++++|++|+|++|.+++.+|..+ ..+++|++|+|++|++++. |..+..+
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~ 145 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ 145 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH
Confidence 355666666 344555444 56666666666666666666654 5666666666666666555 5555555
Q ss_pred ---CCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCC--CCccc--cCCCCCCeeecCCCCCCCC---Chhhhc
Q 004413 70 ---RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGP--IPSSL--SKLASLDSLRISDIYNVSS---SLDFVM 139 (755)
Q Consensus 70 ---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~l~~n~~~~~---~~~~l~ 139 (755)
++|++|+|++|++++..+..|+++++|++|+|++|++.+. .+..+ ..+++|++|++++|.+... ....+.
T Consensus 146 ~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence 6666666666666655556666666666666666665543 22223 5666666666666665521 112344
Q ss_pred CCCCCCEEEeeCccccCCCC-ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEE
Q 004413 140 SLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID 218 (755)
Q Consensus 140 ~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~ 218 (755)
.+++|+.|+|++|.+++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|+|++|+|++.......++|++|+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLS 302 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEe
Confidence 56666666666666665553 34445566666666666666 5555554 56666666666666542222235666666
Q ss_pred eecCcCCC
Q 004413 219 LSYNHLSG 226 (755)
Q Consensus 219 Ls~N~l~g 226 (755)
|++|+|++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 66666654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=251.59 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=113.1
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCC-CCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG-EIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++|++++..|..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++ ..|..+.++++|++|++++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 589999999998888999999999999999999998777779999999999999999986 4567899999999999999
Q ss_pred CCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCccccC------------------------CCCCCeeecCCCCCCC
Q 004413 80 APFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSK------------------------LASLDSLRISDIYNVS 132 (755)
Q Consensus 80 n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------------------------l~~L~~L~l~~n~~~~ 132 (755)
|.+.+.+| ..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+..
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 98555665 57999999999999999999877776654 5667777777776554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-25 Score=235.55 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=179.8
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+.++++|+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4678888888 6677665 599999999999987666689999999999999999988888889999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCC-ccccCCCCCCeeecCCCC-CCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLDSLRISDIY-NVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
+++..+..|.++++|++|++++|+++...+ ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+++..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 996555568999999999999999984333 378899999999999984 555566788899999999999999998889
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcc-cccCCCCCCEEEccCCcCCCCCCccc-----CCCCCEEEeecCcCCC
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPR-TLFNIGSLNYLFLGNNSLSGTLPTQK-----SENLQNIDLSYNHLSG 226 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~~L~~L~Ls~N~l~g 226 (755)
..+..+++|+.|++++|.++. +|. .+..+++|+.|++++|.+++..+... ...++.++|++|.+++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred HHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 999999999999999999974 444 44568999999999999987543321 2345555555555543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=240.33 Aligned_cols=246 Identities=17% Similarity=0.163 Sum_probs=195.1
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 57999999999877778999999999999999999877888999999999999999998766666999999999999999
Q ss_pred CCCCCcch--hhcCCCCCcEEEccCC-CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCC
Q 004413 81 PFTGKIPD--FIGNWTKLKSLRFQGN-SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS 157 (755)
Q Consensus 81 ~l~~~~p~--~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 157 (755)
+++. +|. .|.++++|++|++++| .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 135 ~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 213 (353)
T 2z80_A 135 PYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213 (353)
T ss_dssp CCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred CCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc
Confidence 9994 554 7899999999999999 57766677899999999999999998888888899999999999999998744
Q ss_pred CCccccCCCCCCEEeCCCCCCCCCCccccc---CCCCCCEEEccCCcCCCC----CCcc--cCCCCCEEEeecCcCCCCC
Q 004413 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLF---NIGSLNYLFLGNNSLSGT----LPTQ--KSENLQNIDLSYNHLSGPF 228 (755)
Q Consensus 158 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~--~~~~L~~L~Ls~N~l~g~i 228 (755)
....+..+++|+.|++++|.+++..+..+. ....++.++++++.+++. +|.. ..++|+.|+|++|+|+ .+
T Consensus 214 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i 292 (353)
T 2z80_A 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SV 292 (353)
T ss_dssp HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CC
T ss_pred hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-cc
Confidence 333455689999999999999875443332 355666777777766642 2221 2356777777777776 55
Q ss_pred cccc-c--c-cccccccccccccC
Q 004413 229 PSWV-T--S-NLQMNLVANNFTFD 248 (755)
Q Consensus 229 p~~~-~--~-~~~l~l~~n~~~~~ 248 (755)
|..+ . . ...|++++|+++++
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHHhcCCCCCEEEeeCCCccCc
Confidence 5543 2 2 22467777776654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=247.50 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=107.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|||++|+|++..+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 57899999998777788999999999999999998777778889999999999999887776778888999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCC-CCCccccCCCCCCeeecCCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~ 130 (755)
++++..+..|+++++|++|+|++|.++. ..|..+..+++|++|++++|.+
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 8887666678888888888888888864 3567777788888887776653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=233.15 Aligned_cols=244 Identities=18% Similarity=0.153 Sum_probs=201.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++++|
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 57999999999887889999999999999999999877888999999999999999998655556799999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCC-------------------------------------CCCCee
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL-------------------------------------ASLDSL 123 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-------------------------------------~~L~~L 123 (755)
.+++..+..|.++++|++|++++|.+++.....+..+ ++|+.|
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence 9998778889999999999999999885422222221 245555
Q ss_pred ecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 124 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
++++|.+... +.+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++
T Consensus 232 ~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 232 KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence 5555555433 568899999999999999998889999999999999999999994 6777788999999999999999
Q ss_pred CCCCcc--cCCCCCEEEeecCcCCCCCcccccccccccccccccccC
Q 004413 204 GTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 248 (755)
Q Consensus 204 ~~~p~~--~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~~~ 248 (755)
+ +|.. ..++|+.|+|++|+|+..-...+.....|++++|+++++
T Consensus 309 ~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 309 H-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp C-CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred e-cCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 5 4433 248999999999999865333333445699999999865
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=246.44 Aligned_cols=175 Identities=21% Similarity=0.196 Sum_probs=146.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...|..|.++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 57999999999888889999999999999999999777888999999999999999998888889999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCC-CCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCC----CEEEeeCcccc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQG-PIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNL----TDLSLRNALIT 155 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n~l~ 155 (755)
+++...+..|+++++|++|++++|.+++ .+|..+.++++|++|++++|.+....+..+..+.+| ..|++++|.++
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 9986555578999999999999999986 478999999999999999998887766666666666 77888887776
Q ss_pred CCCCccccCCCCCCEEeCCCC
Q 004413 156 GSIPSGIGELQNLQTLDLSFN 176 (755)
Q Consensus 156 ~~~p~~~~~l~~L~~L~Ls~N 176 (755)
+..+..+..+ +|+.|++++|
T Consensus 191 ~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 191 FIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp EECTTTTTTC-EEEEEEEESC
T ss_pred ecCHHHhccC-cceeEecccc
Confidence 6555544433 4555555544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=242.69 Aligned_cols=136 Identities=17% Similarity=0.158 Sum_probs=119.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus 55 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 134 (570)
T 2z63_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred eEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence 58999999999888889999999999999999999777889999999999999999998766667999999999999999
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCC----CeeecCCCCCCCCChh
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL----DSLRISDIYNVSSSLD 136 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~l~~n~~~~~~~~ 136 (755)
.+++ .+|..|+++++|++|++++|.+++..+..+..+++| ..|++++|.+....+.
T Consensus 135 ~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 9986 579999999999999999999997777778777777 7888888776554443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=230.11 Aligned_cols=222 Identities=21% Similarity=0.134 Sum_probs=181.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++. | ++.+++|++|+|++|.+++. + ++++++|++|++++|.+++. | +..+++|++|++++|
T Consensus 67 ~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 67 TKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARN 137 (457)
T ss_dssp SEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTS
T ss_pred CEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCC
Confidence 5899999999975 4 89999999999999999864 4 89999999999999999874 4 889999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++++ ++ ++++++|++|++++|...+.+ .+..+++|+.|++++|.+.... +..+++|+.|++++|.+++.
T Consensus 138 ~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~--- 206 (457)
T 3bz5_A 138 TLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL--- 206 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---
T ss_pred ccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---
Confidence 9996 33 888999999999999665555 4788999999999999887753 77889999999999999865
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCC----------CCCEEEeecCcCCCCCcc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE----------NLQNIDLSYNHLSGPFPS 230 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~----------~L~~L~Ls~N~l~g~ip~ 230 (755)
.++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..+. .++ +|+.|++++|.+.|.+|.
T Consensus 207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~-~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~ 282 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS-TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282 (457)
T ss_dssp CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT-TCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH-HCCCCCEEeccCCCCCEEECCCCccCCcccc
Confidence 48889999999999999996 66 78899999999999999975433 333 455666777777777774
Q ss_pred ccc-ccccccccccccc
Q 004413 231 WVT-SNLQMNLVANNFT 246 (755)
Q Consensus 231 ~~~-~~~~l~l~~n~~~ 246 (755)
.-. ....|++++|.+.
T Consensus 283 ~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQL 299 (457)
T ss_dssp TTCTTCCCCCCTTCTTC
T ss_pred cccccCCEEECCCCccc
Confidence 322 3335788887643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=220.39 Aligned_cols=218 Identities=20% Similarity=0.205 Sum_probs=178.1
Q ss_pred ecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCC
Q 004413 5 VAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 5 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
+..+.+.... .+..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+.+. ..+..+++|++|++++|.+++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 26 LKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC
T ss_pred hcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc
Confidence 4445554332 3567788999999999886 333 588889999999999988763 478889999999999999987
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 77777888999999999999998777777888999999999988888777777888889999999999988777777888
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.. ++|+.|+++.|.++|.+|.+++
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-----~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-----PGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-----TTTHHHHHHHHHTGGGBBCTTS
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-----cHHHHHHHHHHhCCCcccCccc
Confidence 899999999999998777777888889999999999887554 3678888888888888888765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=229.88 Aligned_cols=232 Identities=27% Similarity=0.325 Sum_probs=146.7
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.|++++|.+.. +| .+..+++|++|+|++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|++++|.
T Consensus 50 ~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 50 TLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp EEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC
Confidence 45555555542 33 244555555555555555432 22 5555555555555555543322 5555555555555555
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCC-------------------CCccccCCCCCCeeecCCCCCCCCChhhhcCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGP-------------------IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLK 142 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------------------~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 142 (755)
+++.. . +.++++|++|++++|.+++. ....+.++++|+.|++++|.+... ..+..++
T Consensus 124 l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 199 (466)
T 1o6v_A 124 ITDID-P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 199 (466)
T ss_dssp CCCCG-G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred CCCCh-H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCC
Confidence 54322 1 44555555555555544421 012367788888899988876554 4578888
Q ss_pred CCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecC
Q 004413 143 NLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYN 222 (755)
Q Consensus 143 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N 222 (755)
+|+.|++++|.+++..+ ++.+++|+.|++++|++++ + ..+..+++|+.|++++|.+++..+....++|+.|++++|
T Consensus 200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred CCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence 99999999998886655 6778889999999998884 3 367788889999999998887766555688888888888
Q ss_pred cCCCCCccccc--ccccccccccccccC
Q 004413 223 HLSGPFPSWVT--SNLQMNLVANNFTFD 248 (755)
Q Consensus 223 ~l~g~ip~~~~--~~~~l~l~~n~~~~~ 248 (755)
.+++..| ... ....|++++|.++..
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCSCC
T ss_pred ccCcccc-ccCCCccCeEEcCCCcccCc
Confidence 8886544 211 233578888877643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=216.81 Aligned_cols=223 Identities=20% Similarity=0.192 Sum_probs=182.0
Q ss_pred EEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCC
Q 004413 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPF 82 (755)
Q Consensus 3 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 82 (755)
++-.+.++. .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344455555 5666554 5899999999999877777899999999999999999877777899999999999999999
Q ss_pred CCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCC-hhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 83 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSS-LDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 83 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.... +..+..+++|+.|+|++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 9777788999999999999999999777767899999999999998887754 667888999999999999998777777
Q ss_pred ccCCCCCC----EEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc--cCCCCCEEEeecCcCCCCCc
Q 004413 162 IGELQNLQ----TLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 162 ~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~L~~L~Ls~N~l~g~ip 229 (755)
+..+++|+ .|++++|.+++..+ ......+|+.|++++|++++..+.. ..++|+.|+|++|++++..|
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 77766666 89999999985444 4444558999999999998655443 24789999999999987765
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=210.71 Aligned_cols=204 Identities=20% Similarity=0.196 Sum_probs=155.6
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
+++.++++++.++ .+|..+. ++|++|+|++|++....+..|.++++|++|+|++|.++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5677888888777 4665554 577888888888776666677788888888888888775555556777888888888
Q ss_pred CCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCC
Q 004413 103 GNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182 (755)
Q Consensus 103 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 182 (755)
+|.+++..+..+..+++|++|++++|.+....+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88887665666777888888888887777777777788888888888888888666666888888888888888888766
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCc
Q 004413 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 183 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip 229 (755)
+..+..+++|+.|+|++|++++..+..+ .++|+.|+|++|++....+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6678888888888888888886554332 3788899999998876543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=217.96 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=130.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+ +..+++|++|+|++|.++. ++ .+.++++|++|++++|.+.+. +. +..+++|++|++++|
T Consensus 69 ~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 69 EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTC
T ss_pred cEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCC
Confidence 578899998885433 8888999999999998874 44 588889999999998888654 33 778888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..... +..+++|+.|++++|.+.+..+
T Consensus 143 ~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 143 HNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp TTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence 6554443 37777778888887777764322 6677777777777776554332 4455555555555555543322
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~ 225 (755)
+..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.......++|+.|++++|.++
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred -hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccC
Confidence 44445555555555555432 22 4444555555555554443211122244445555555444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=215.75 Aligned_cols=206 Identities=20% Similarity=0.184 Sum_probs=182.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 57999999999888889999999999999999999777778999999999999999998888889999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCC-CCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCC----EEEeeCcccc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGP-IPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLT----DLSLRNALIT 155 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~ 155 (755)
.+++..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|.+.......+..+.+|+ .|++++|.++
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 99977776899999999999999999863 689999999999999999999887776666666665 8999999999
Q ss_pred CCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC
Q 004413 156 GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLP 207 (755)
Q Consensus 156 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 207 (755)
+..+..+. ..+|+.|+|++|++++..+..+..+++|+.|++++|++++..+
T Consensus 191 ~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 191 FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 66655554 4589999999999997666677899999999999999986544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-22 Score=221.81 Aligned_cols=221 Identities=19% Similarity=0.153 Sum_probs=177.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.|++. | .++.+++|++|+|++|.+++ +| ++.+++|++|+|++|.+++. + +.++++|++|++++|
T Consensus 45 ~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 45 TSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp CEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred CEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence 5789999999864 5 68899999999999999986 34 88899999999999998774 3 888999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++++ ++ ++.+++|++|++++|++++. .+..+++|+.|++++|...... .+..+++|+.|++++|.+++ +|
T Consensus 117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 117 KLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC-
T ss_pred cCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec-
Confidence 9886 44 88889999999999999863 3788899999999988544433 46788899999999999986 44
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccccccccccc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNL 240 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l 240 (755)
+..+++|+.|++++|++++. .+..+++|+.|++++|++++ +|....++|+.|++++|+|++..+..+.....|++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 78889999999999999864 37888999999999999997 56556688999999999998765544443333444
Q ss_pred cccc
Q 004413 241 VANN 244 (755)
Q Consensus 241 ~~n~ 244 (755)
..|+
T Consensus 262 ~~n~ 265 (457)
T 3bz5_A 262 IQTD 265 (457)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 4443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=226.65 Aligned_cols=226 Identities=20% Similarity=0.286 Sum_probs=110.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccC-------------cEEEccccCCCCC------
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKL-------------EQLYLNSWGAGGE------ 61 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~------ 61 (755)
++|++++|++ |.+|.+|+++++|++|++++|.+.+.+|..++++.+| ++|++++|++++.
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~ 92 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH 92 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTT
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCC
Confidence 4688899999 7899889999999999999998888888888877653 6666666665441
Q ss_pred -------------CchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCC
Q 004413 62 -------------IPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDI 128 (755)
Q Consensus 62 -------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 128 (755)
+|.. +++|++|++++|++++ ++.. .++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus 93 L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 93 LESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 2211 1333444444443332 1110 1466677777776664 55 4667777777777766
Q ss_pred CCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCC-------------------CCcccccCC
Q 004413 129 YNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG-------------------QIPRTLFNI 189 (755)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------~~p~~l~~l 189 (755)
.+.... . ...+|++|++++|.+++ +| .++.+++|+.|++++|++++ .+| .+..+
T Consensus 164 ~l~~lp-~---~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l 236 (454)
T 1jl5_A 164 SLKKLP-D---LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNL 236 (454)
T ss_dssp CCSCCC-C---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred cCcccC-C---CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCC
Confidence 655421 1 12355566666665554 33 35555555555555555543 333 24455
Q ss_pred CCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccccccccccccccccc
Q 004413 190 GSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFT 246 (755)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~ 246 (755)
++|+.|++++|++++ +|. ..++|+.|++++|++++ +|........|++++|.++
T Consensus 237 ~~L~~L~l~~N~l~~-l~~-~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LPD-LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFS 290 (454)
T ss_dssp TTCCEEECCSSCCSS-CCS-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCCc-ccc-cccccCEEECCCCcccc-cCcccCcCCEEECcCCccC
Confidence 555555555555553 222 22455555555555553 4443323334555555544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=214.74 Aligned_cols=245 Identities=22% Similarity=0.289 Sum_probs=201.2
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.++. +| .+.++++|++|+|++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++|++++|
T Consensus 91 ~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 91 TNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp CEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred CEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence 589999999986 34 69999999999999999984 444 8999999999999997766555 4899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+..... +..+++|+.|++++|.+++..+
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 9985443 88999999999999999853 33 8889999999999988776544 7889999999999999985544
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc---cccc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT---SNLQ 237 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~ 237 (755)
+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+++.......++|+.|++++|++++..|..+. ....
T Consensus 239 -~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred -hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 8899999999999999985 3 46889999999999999999753334458999999999999988887665 2346
Q ss_pred ccccccccccCCCCCCCCCCcccc
Q 004413 238 MNLVANNFTFDRSNISVFPGLHCL 261 (755)
Q Consensus 238 l~l~~n~~~~~~~~~~~~~~l~~l 261 (755)
|++++|+++.... ...++.+..+
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L 338 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSA 338 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEE
T ss_pred EEccCCccccccC-hhhhhcccee
Confidence 8999999875432 3344444443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=236.37 Aligned_cols=210 Identities=20% Similarity=0.169 Sum_probs=96.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|+|++|.|++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|++|++++|.
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNN 110 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSC
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCc
Confidence 44555555554444445555555555555555543322 444555555555555443211 12445555555555
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhc-CCCCCCEEEeeCccccCCCCc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM-SLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~ 160 (755)
+++..+. .+++|+.|+|++|.+++..|..+..+++|+.|++++|.+....+..+. .+++|+.|+|++|.+++..+
T Consensus 111 l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~- 186 (487)
T 3oja_A 111 ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG- 186 (487)
T ss_dssp CCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-
T ss_pred CCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-
Confidence 5433322 234455555555555544444444555555555555544443333332 44555555555555543311
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc--cCCCCCEEEeecCcCC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLS 225 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~L~~L~Ls~N~l~ 225 (755)
+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|.. ..++|+.|++++|++.
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred -cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 2234555555555555553 22234445555555555555543 2221 1244555555555554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=222.91 Aligned_cols=219 Identities=21% Similarity=0.191 Sum_probs=160.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|++++..|..|.++++|++|+|++|.+++..+ +..+++|++|+|++|.+++. ..+++|++|++++|
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n 109 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANN 109 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSS
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCC
Confidence 467888888887777778888888888888888875443 77888888888888877532 23477888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhh-cCCCCCCEEEeeCccccCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFV-MSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p 159 (755)
.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+ ..+++|++|+|++|.+++. +
T Consensus 110 ~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~ 185 (317)
T 3o53_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (317)
T ss_dssp CCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred ccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c
Confidence 87754433 35678888888888887666677778888888888887776655554 4678888888888888754 2
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCC-CCCccccc
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLS-GPFPSWVT 233 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~-g~ip~~~~ 233 (755)
....+++|+.|+|++|++++ +|..+..+++|+.|++++|++++ +|... .++|+.|++++|+++ +.+|.++.
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 186 -GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp -CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred -cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 23347888888888888884 55557788888888888888874 44432 367888888888887 56666655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=221.90 Aligned_cols=233 Identities=27% Similarity=0.313 Sum_probs=154.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|.+++..| +.++++|++|+|++|.+++..+ +.++++|++|+|++|.+.+..+ +.++++|++|++++|
T Consensus 71 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 71 TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE
T ss_pred CEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC
Confidence 578888888886544 7888888888888888875433 7888888888888888765432 777777777777777
Q ss_pred CCCCCcc-------------------hhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCC
Q 004413 81 PFTGKIP-------------------DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSL 141 (755)
Q Consensus 81 ~l~~~~p-------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 141 (755)
.+.+... ..+.++++|++|++++|.+++. ..+..+++|++|++++|.+....+ +..+
T Consensus 145 ~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 145 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--cccc
Confidence 7653210 1256677788888888887742 347777888888888777655433 5566
Q ss_pred CCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeec
Q 004413 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 221 (755)
Q Consensus 142 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~ 221 (755)
++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+....++|+.|++++
T Consensus 221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence 7777777777776643 246666777777777777764333 666677777777777776555444446677777777
Q ss_pred CcCCCCCccccc-cccccccccccccc
Q 004413 222 NHLSGPFPSWVT-SNLQMNLVANNFTF 247 (755)
Q Consensus 222 N~l~g~ip~~~~-~~~~l~l~~n~~~~ 247 (755)
|++++..|-.-. ....|++++|+++.
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSC
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCC
Confidence 777654431111 22346666666654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=203.25 Aligned_cols=202 Identities=21% Similarity=0.279 Sum_probs=178.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.+++++++++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 36899999998 5776555 68999999999999766778999999999999999998766667899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.......+..+++|+.|+|++|.+++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 99977777789999999999999999987788889999999999999998888777889999999999999999987777
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (755)
.|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 889999999999999999976666788899999999999998744
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=206.61 Aligned_cols=204 Identities=23% Similarity=0.191 Sum_probs=177.1
Q ss_pred hhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 17 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
.+.++++|+.+++++|.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.+++ ++.. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 3678899999999999998 6776664 689999999999988888899999999999999999985 4433 789999
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCC
Q 004413 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176 (755)
Q Consensus 97 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 176 (755)
++|+|++|.++ .+|..+..+++|+.|++++|.+....+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 78888999999999999999998888888999999999999999999877778889999999999999
Q ss_pred CCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCCCC
Q 004413 177 NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGP 227 (755)
Q Consensus 177 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~g~ 227 (755)
++++..+..+..+++|+.|+|++|+++ .+|.... .+|+.|+|++|++...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 999655566788999999999999998 4555443 6799999999998753
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=214.32 Aligned_cols=199 Identities=21% Similarity=0.202 Sum_probs=103.1
Q ss_pred ccCcEEEccccCCCCCCchhh--hcCCCCCEEEccCCCCCCCcc----hhhcCCCCCcEEEccCCCCCCCCCccccCCCC
Q 004413 46 AKLEQLYLNSWGAGGEIPSTY--AKLRNMQTLWASDAPFTGKIP----DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119 (755)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 119 (755)
++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445566665555555555554 555556666666655554333 22334555666666666555555555555556
Q ss_pred CCeeecCCCCCCCC----ChhhhcCCCCCCEEEeeCccccCCCCc----cccCCCCCCEEeCCCCCCCCCCcccccCC--
Q 004413 120 LDSLRISDIYNVSS----SLDFVMSLKNLTDLSLRNALITGSIPS----GIGELQNLQTLDLSFNNLTGQIPRTLFNI-- 189 (755)
Q Consensus 120 L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-- 189 (755)
|++|++++|.+... ....+..+++|++|+|++|.++ .++. .+..+++|++|+|++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666655554321 0112245555666666666554 1121 13445566666666666655445444444
Q ss_pred -CCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCC-CCcccccccccccccccccc
Q 004413 190 -GSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSG-PFPSWVTSNLQMNLVANNFT 246 (755)
Q Consensus 190 -~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g-~ip~~~~~~~~l~l~~n~~~ 246 (755)
++|+.|+|++|+|+ .+|....++|+.|||++|+|++ .++..+.....|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 45666666666665 3444444556666666666654 23322323334555555554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-23 Score=223.05 Aligned_cols=233 Identities=15% Similarity=0.092 Sum_probs=190.2
Q ss_pred EEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCC
Q 004413 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPF 82 (755)
Q Consensus 3 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 82 (755)
++++.+.+...+...+..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4556666654555556677899999999999998888899999999999999999976554 89999999999999998
Q ss_pred CCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccc
Q 004413 83 TGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI 162 (755)
Q Consensus 83 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 162 (755)
++ ++ ..++|++|++++|.+++..+. .+++|++|++++|.+....+..+..+++|+.|+|++|.+++..+..+
T Consensus 93 ~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 84 32 348999999999999865433 46889999999999988777788889999999999999998777766
Q ss_pred -cCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc-cCCCCCEEEeecCcCCCCCccccc---cccc
Q 004413 163 -GELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-KSENLQNIDLSYNHLSGPFPSWVT---SNLQ 237 (755)
Q Consensus 163 -~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~ 237 (755)
..+++|+.|+|++|.+++. +. ...+++|+.|+|++|++++..+.. ..++|+.|+|++|+|+ .+|..+. ....
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred hhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 4789999999999999854 43 345899999999999999655442 2489999999999998 5676654 2335
Q ss_pred ccccccccccC
Q 004413 238 MNLVANNFTFD 248 (755)
Q Consensus 238 l~l~~n~~~~~ 248 (755)
|++++|+++++
T Consensus 242 L~l~~N~~~~~ 252 (317)
T 3o53_A 242 FDLRGNGFHCG 252 (317)
T ss_dssp EECTTCCCBHH
T ss_pred EEccCCCccCc
Confidence 88999988743
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=206.08 Aligned_cols=199 Identities=20% Similarity=0.188 Sum_probs=179.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|++++|.+.. + +.+..+++|++|+|++|.+++ + ..+.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 44 ~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 44 DQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 478999999883 3 358999999999999999985 3 47999999999999999999888888999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
++++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 99987777899999999999999999977777789999999999999999888777889999999999999999988888
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK 210 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 210 (755)
.+..+++|+.|+|++|.+.+. +++|+.|+++.|.++|.+|...
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred HHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 899999999999999998754 5579999999999999988754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=205.66 Aligned_cols=197 Identities=22% Similarity=0.205 Sum_probs=178.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|++++|+++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+ ...+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN 87 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC
Confidence 46899999998 6676665 799999999999998888899999999999999999976433 278999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
+++ .+|..+.++++|++|+|++|++++..+..|..+++|++|++++|.+.......+..+++|+.|+|++|+++...+.
T Consensus 88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 998 7888899999999999999999977778899999999999999999988888889999999999999999977777
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
.+..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|.+..
T Consensus 167 ~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 7889999999999999999 788889999999999999999874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-23 Score=233.38 Aligned_cols=222 Identities=17% Similarity=0.122 Sum_probs=186.0
Q ss_pred CchhhcCCC----CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchh
Q 004413 14 VPRELGNLK----ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDF 89 (755)
Q Consensus 14 ~p~~l~~l~----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 89 (755)
+|..+..+. +|++|+|++|.+++..|..|.++++|++|+|++|.+++..| |..+++|++|+|++|.+++ ++
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC--
Confidence 455555554 89999999999998888899999999999999999987665 8999999999999999884 33
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcccc-CCCCC
Q 004413 90 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG-ELQNL 168 (755)
Q Consensus 90 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L 168 (755)
..++|++|++++|.+++..+. .+++|+.|++++|.+....+..+..+++|+.|+|++|.+++.+|..+. .+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 238999999999999965543 468899999999999888788889999999999999999988888876 79999
Q ss_pred CEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc-cCCCCCEEEeecCcCCCCCccccc---ccccccccccc
Q 004413 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-KSENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANN 244 (755)
Q Consensus 169 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~ 244 (755)
+.|+|++|.+++. + .+..+++|+.|+|++|.+++..|.. ..++|+.|+|++|.|++ +|.++. ....|++++|.
T Consensus 172 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 172 EHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCC
T ss_pred cEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCC
Confidence 9999999999964 3 3446899999999999999765552 24899999999999995 777665 23358889888
Q ss_pred cccC
Q 004413 245 FTFD 248 (755)
Q Consensus 245 ~~~~ 248 (755)
++++
T Consensus 249 l~c~ 252 (487)
T 3oja_A 249 FHCG 252 (487)
T ss_dssp BCHH
T ss_pred CcCc
Confidence 8744
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-22 Score=199.76 Aligned_cols=204 Identities=21% Similarity=0.205 Sum_probs=167.1
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC-CCCCCchhhhcCCCCCEEEccC-CCCCCCcchhh
Q 004413 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGGEIPSTYAKLRNMQTLWASD-APFTGKIPDFI 90 (755)
Q Consensus 13 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~ 90 (755)
.+|. +. ++|++|+|++|++++..+..|.++++|++|+|++|. ++...+..|.++++|++|++++ |+++...+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5666 44 489999999999987667789999999999999997 7766666899999999999998 89986666788
Q ss_pred cCCCCCcEEEccCCCCCCCCCccccCCCCCC---eeecCCC-CCCCCChhhhcCCCCCC-EEEeeCccccCCCCccccCC
Q 004413 91 GNWTKLKSLRFQGNSFQGPIPSSLSKLASLD---SLRISDI-YNVSSSLDFVMSLKNLT-DLSLRNALITGSIPSGIGEL 165 (755)
Q Consensus 91 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l 165 (755)
.++++|++|++++|.+++ +|. +..+++|+ .|++++| .+.......+..+++|+ .|++++|.++ .+|......
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 999999999999999985 666 88888888 9999998 77777777788899999 9999999988 444443334
Q ss_pred CCCCEEeCCCCC-CCCCCcccccCC-CCCCEEEccCCcCCCCCCcccCCCCCEEEeecCc
Q 004413 166 QNLQTLDLSFNN-LTGQIPRTLFNI-GSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH 223 (755)
Q Consensus 166 ~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~ 223 (755)
++|+.|+|++|+ +++..+..+..+ ++|+.|++++|++++ +|...+++|+.|+++++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCTTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChhHhccCceeeccCcc
Confidence 889999999995 886556778888 899999999999984 555577889999887763
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=223.16 Aligned_cols=248 Identities=22% Similarity=0.239 Sum_probs=196.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|
T Consensus 79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC
Confidence 58999999999877888999999999999999998777778999999999999999998877778999999999999999
Q ss_pred CCCC-CcchhhcCCCCCcEEEccCCCCCCCCCcccc--------------------------------------------
Q 004413 81 PFTG-KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLS-------------------------------------------- 115 (755)
Q Consensus 81 ~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-------------------------------------------- 115 (755)
.++. .+|..++.+++|++|++++|++++..+..+.
T Consensus 159 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSH
T ss_pred ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccc
Confidence 9875 4678888999999999998877532221110
Q ss_pred --------------------------------------------------------------------------------
Q 004413 116 -------------------------------------------------------------------------------- 115 (755)
Q Consensus 116 -------------------------------------------------------------------------------- 115 (755)
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence
Q ss_pred --------------------------------------------------CCCCCCeeecCCCCCCC-------------
Q 004413 116 --------------------------------------------------KLASLDSLRISDIYNVS------------- 132 (755)
Q Consensus 116 --------------------------------------------------~l~~L~~L~l~~n~~~~------------- 132 (755)
.+++|+.|+++.|.+..
T Consensus 319 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 398 (635)
T 4g8a_A 319 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398 (635)
T ss_dssp EECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC
T ss_pred ccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhh
Confidence 01233333333332210
Q ss_pred -------------------------------------------------------------CChhhhcCCCCCCEEEeeC
Q 004413 133 -------------------------------------------------------------SSLDFVMSLKNLTDLSLRN 151 (755)
Q Consensus 133 -------------------------------------------------------------~~~~~l~~l~~L~~L~L~~ 151 (755)
..+..+..++.|+.|+|++
T Consensus 399 L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 0001223456677888888
Q ss_pred cccc-CCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCC
Q 004413 152 ALIT-GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPF 228 (755)
Q Consensus 152 n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~i 228 (755)
|.+. +.+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+ +++|++|||++|+|++..
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 8644 4578889999999999999999998889999999999999999999998777644 489999999999999998
Q ss_pred ccccc---ccc-cccccccccccC
Q 004413 229 PSWVT---SNL-QMNLVANNFTFD 248 (755)
Q Consensus 229 p~~~~---~~~-~l~l~~n~~~~~ 248 (755)
|..+. ..+ .|+|++|+|.|+
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCS
T ss_pred HHHHHhhhCcCCEEEeeCCCCccc
Confidence 98775 223 589999999987
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=203.44 Aligned_cols=206 Identities=22% Similarity=0.289 Sum_probs=171.8
Q ss_pred ecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCC
Q 004413 5 VAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 5 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
+..+.+.+.++ +..+++|++|++++|.++ .+| .+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+++
T Consensus 26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred hCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence 34444544332 456889999999999997 455 58899999999999999976544 8999999999999999985
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
++ .+..+++|++|++++|.+++ ++. +..+++|+.|++++|.+..... +..+++|+.|+|++|.+++..+ +..
T Consensus 100 -~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 100 -VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp -CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC
Confidence 43 68899999999999999985 443 8999999999999998776543 8889999999999999986443 889
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCC
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSG 226 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g 226 (755)
+++|+.|+|++|++++. +. +..+++|+.|++++|++++..+....++|+.|++++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 99999999999999854 43 88999999999999999987765566899999999999974
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=207.05 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=182.9
Q ss_pred eEEecCCcCcCCCch---hhcCCCCCCEEEccCccCCCCCcccc--cCCccCcEEEccccCCCCCCc----hhhhcCCCC
Q 004413 2 LLSVAHNVFSGSVPR---ELGNLKELTVLSFGNNNFSGTLPPEI--GNLAKLEQLYLNSWGAGGEIP----STYAKLRNM 72 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L 72 (755)
.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|
T Consensus 68 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L 147 (310)
T 4glp_A 68 RLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL 147 (310)
T ss_dssp EEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC
T ss_pred EEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCC
Confidence 466777766532111 12345789999999999999999888 899999999999999987665 345679999
Q ss_pred CEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCC--C--CccccCCCCCCeeecCCCCCCCCChh---hhcCCCCCC
Q 004413 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGP--I--PSSLSKLASLDSLRISDIYNVSSSLD---FVMSLKNLT 145 (755)
Q Consensus 73 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~ 145 (755)
++|+|++|.+++..+..|.++++|++|+|++|++.+. + +..+..+++|++|++++|.+...... .+..+++|+
T Consensus 148 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 148 KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH 227 (310)
T ss_dssp CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS
T ss_pred CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC
Confidence 9999999999988889999999999999999998642 2 23357899999999999988643221 357889999
Q ss_pred EEEeeCccccCCCCccccCC---CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecC
Q 004413 146 DLSLRNALITGSIPSGIGEL---QNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYN 222 (755)
Q Consensus 146 ~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N 222 (755)
+|+|++|.+++..|..+..+ ++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++......+++|+.|+|++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 99999999998888888777 69999999999999 6787774 899999999999997533345589999999999
Q ss_pred cCCC
Q 004413 223 HLSG 226 (755)
Q Consensus 223 ~l~g 226 (755)
+|+.
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9974
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=192.53 Aligned_cols=181 Identities=21% Similarity=0.220 Sum_probs=146.3
Q ss_pred CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 004413 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF 101 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 101 (755)
...+.++++++.++ .+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35667788888776 5665554 57788888888887777777788888888888888888777777788888888888
Q ss_pred cCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCC
Q 004413 102 QGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181 (755)
Q Consensus 102 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 181 (755)
++|.+++..+..|..+++|++|++++|.+.......+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888866666777888888888888877766666778888899999999999877777889999999999999999977
Q ss_pred CcccccCCCCCCEEEccCCcCCCC
Q 004413 182 IPRTLFNIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 182 ~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (755)
.+..+..+++|+.|+|++|.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888999999999999999865
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-23 Score=218.41 Aligned_cols=243 Identities=15% Similarity=0.143 Sum_probs=190.0
Q ss_pred CeEEecCCcCcCCCchhhcCC--CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCC-CchhhhcCCCCCEEEc
Q 004413 1 MLLSVAHNVFSGSVPRELGNL--KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE-IPSTYAKLRNMQTLWA 77 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L 77 (755)
+.|++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+.+. ++..+..+++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 46889988877 5667777 8999999999999876555 66789999999999998765 7778899999999999
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEccCC-CCCCC-CCccccCCCCCCeeecCCC-CCCCC-ChhhhcCCC-CCCEEEeeCc
Q 004413 78 SDAPFTGKIPDFIGNWTKLKSLRFQGN-SFQGP-IPSSLSKLASLDSLRISDI-YNVSS-SLDFVMSLK-NLTDLSLRNA 152 (755)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~L~~n 152 (755)
++|.+++..+..++.+++|++|+|++| .+++. ++..+..+++|++|++++| .+... .+..+..++ +|++|+|++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 999988888888999999999999999 67752 5666888999999999998 66543 345678888 9999999999
Q ss_pred --ccc-CCCCccccCCCCCCEEeCCCCC-CCCCCcccccCCCCCCEEEccCCc-CCCCCC--cccCCCCCEEEeecCcCC
Q 004413 153 --LIT-GSIPSGIGELQNLQTLDLSFNN-LTGQIPRTLFNIGSLNYLFLGNNS-LSGTLP--TQKSENLQNIDLSYNHLS 225 (755)
Q Consensus 153 --~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p--~~~~~~L~~L~Ls~N~l~ 225 (755)
.++ +.++..+..+++|+.|+|++|. +++..+..+..+++|+.|++++|. +..... ....++|+.|++++| ++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 454 3466677889999999999999 777778888999999999999995 332111 123589999999998 44
Q ss_pred CCCcccccc-cccccccccccccC
Q 004413 226 GPFPSWVTS-NLQMNLVANNFTFD 248 (755)
Q Consensus 226 g~ip~~~~~-~~~l~l~~n~~~~~ 248 (755)
...-..+.. ...|+++.|+++..
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred HHHHHHHHhhCcceEEecccCccc
Confidence 322222222 34578888887744
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=206.00 Aligned_cols=204 Identities=21% Similarity=0.241 Sum_probs=118.2
Q ss_pred CCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 004413 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRF 101 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 101 (755)
++|++|+|++|.+++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 467777777777764 55 47777777777777777654 44322 466777777776664 44 4666666666666
Q ss_pred cCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCC
Q 004413 102 QGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 181 (755)
Q Consensus 102 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 181 (755)
++|.+++ +|... ++|+.|++++|.+.... .+..+++|+.|++++|.+++ +|.. +++|+.|++++|++++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD- 271 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-
Confidence 6666663 33322 35666666666554222 35556666666666666553 3321 2455555555555543
Q ss_pred Ccccc-----------------cCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccccccccccccccc
Q 004413 182 IPRTL-----------------FNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244 (755)
Q Consensus 182 ~p~~l-----------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~ 244 (755)
+|..+ ...++|+.|++++|++++. + ...++|+.|++++|++++ +|..+.....|++++|.
T Consensus 272 l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~-~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-C-DLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNH 348 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-C-CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-c-CCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCc
Confidence 33211 0013444555555544431 1 122578888888888886 77765555568888888
Q ss_pred ccc
Q 004413 245 FTF 247 (755)
Q Consensus 245 ~~~ 247 (755)
++.
T Consensus 349 l~~ 351 (454)
T 1jl5_A 349 LAE 351 (454)
T ss_dssp CSC
T ss_pred ccc
Confidence 774
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=191.60 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=147.8
Q ss_pred ccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeec
Q 004413 46 AKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRI 125 (755)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 125 (755)
.+.++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46778888888885 4555544 67889999999988877778888899999999999998877777888899999999
Q ss_pred CCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCC
Q 004413 126 SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 126 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (755)
++|.+....+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 98888877777888888999999999988877777778889999999999998866666788888999999999998866
Q ss_pred CCccc--CCCCCEEEeecCcCCCC
Q 004413 206 LPTQK--SENLQNIDLSYNHLSGP 227 (755)
Q Consensus 206 ~p~~~--~~~L~~L~Ls~N~l~g~ 227 (755)
.+..+ .++|+.|+|++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 65433 37888999999998876
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=196.85 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=171.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCcc-CCCCCcccccCCccCcEEEccc-cCCCCCCchhhhcCCCCCEEEcc
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNN-FSGTLPPEIGNLAKLEQLYLNS-WGAGGEIPSTYAKLRNMQTLWAS 78 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~ 78 (755)
++|+|++|++++..+..|.++++|++|+|++|. ++...+..|.++++|++|+|++ |.++...+..|..+++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 579999999998777789999999999999997 8866667899999999999998 99987777889999999999999
Q ss_pred CCCCCCCcchhhcCCCCCc---EEEccCC-CCCCCCCccccCCCCCC-eeecCCCCCCCCChhhhcCCCCCCEEEeeCcc
Q 004413 79 DAPFTGKIPDFIGNWTKLK---SLRFQGN-SFQGPIPSSLSKLASLD-SLRISDIYNVSSSLDFVMSLKNLTDLSLRNAL 153 (755)
Q Consensus 79 ~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 153 (755)
+|.+++ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.+.......+.. ++|+.|+|++|.
T Consensus 114 ~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 114 NTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp EECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT
T ss_pred CCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC
Confidence 999995 776 88899998 9999999 99876677799999999 9999999988666656655 899999999995
Q ss_pred -ccCCCCccccCC-CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCc
Q 004413 154 -ITGSIPSGIGEL-QNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201 (755)
Q Consensus 154 -l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 201 (755)
++...+..|..+ ++|+.|+|++|++++ +|.. .+++|+.|+++++.
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 987777889999 999999999999994 5544 67899999998763
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-23 Score=223.03 Aligned_cols=236 Identities=22% Similarity=0.239 Sum_probs=176.7
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCC----cccccCCccCcEEEccccCC---CCCCchhh-------hcCCCCCEEEcc
Q 004413 13 SVPRELGNLKELTVLSFGNNNFSGTL----PPEIGNLAKLEQLYLNSWGA---GGEIPSTY-------AKLRNMQTLWAS 78 (755)
Q Consensus 13 ~~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l---~~~~p~~~-------~~l~~L~~L~L~ 78 (755)
.++..+..+++|++|+|++|.++... +..|..+++|++|+|++|.+ .+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 35566778888999999999887553 33467888999999988644 44556554 678899999999
Q ss_pred CCCCCC----CcchhhcCCCCCcEEEccCCCCCCCCCcc----ccCC---------CCCCeeecCCCCCCCCChh----h
Q 004413 79 DAPFTG----KIPDFIGNWTKLKSLRFQGNSFQGPIPSS----LSKL---------ASLDSLRISDIYNVSSSLD----F 137 (755)
Q Consensus 79 ~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~l~~n~~~~~~~~----~ 137 (755)
+|.++. .++..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|.+.....+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998886 47778888899999999999886433333 3333 8899999998887644333 5
Q ss_pred hcCCCCCCEEEeeCccccC-----CCCccccCCCCCCEEeCCCCCCC----CCCcccccCCCCCCEEEccCCcCCCC---
Q 004413 138 VMSLKNLTDLSLRNALITG-----SIPSGIGELQNLQTLDLSFNNLT----GQIPRTLFNIGSLNYLFLGNNSLSGT--- 205 (755)
Q Consensus 138 l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~--- 205 (755)
+..+++|+.|+|++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678889999999998873 24447788889999999999885 46777888888999999999988764
Q ss_pred -CCcc----cCCCCCEEEeecCcCCC----CCccccc----ccccccccccccccC
Q 004413 206 -LPTQ----KSENLQNIDLSYNHLSG----PFPSWVT----SNLQMNLVANNFTFD 248 (755)
Q Consensus 206 -~p~~----~~~~L~~L~Ls~N~l~g----~ip~~~~----~~~~l~l~~n~~~~~ 248 (755)
++.. ..++|+.|+|++|.|++ .+|..+. ....|++++|+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 3332 25789999999999987 4777662 233588888888744
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-22 Score=214.70 Aligned_cols=246 Identities=19% Similarity=0.160 Sum_probs=195.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCc----ccccCCc-cCcEEEccccCCCCCCchhhhcC-----C
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLP----PEIGNLA-KLEQLYLNSWGAGGEIPSTYAKL-----R 70 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~ 70 (755)
.+++|+.|++++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+.+..+..+..+ +
T Consensus 1 ~~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp CEEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred CccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 368999999999999988888889999999999997766 7788888 99999999999998888777775 9
Q ss_pred CCCEEEccCCCCCCCcchhh----cCC-CCCcEEEccCCCCCCCCCccc----cC-CCCCCeeecCCCCCCCCChh----
Q 004413 71 NMQTLWASDAPFTGKIPDFI----GNW-TKLKSLRFQGNSFQGPIPSSL----SK-LASLDSLRISDIYNVSSSLD---- 136 (755)
Q Consensus 71 ~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~~~~~~~~---- 136 (755)
+|++|+|++|.+++..+..+ ..+ ++|++|+|++|.+++..+..+ .. .++|++|++++|.+......
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999997766644 444 899999999999986665543 34 36999999999998866554
Q ss_pred hhcCCC-CCCEEEeeCccccCCCCccc----cCC-CCCCEEeCCCCCCCCC----CcccccC-CCCCCEEEccCCcCCCC
Q 004413 137 FVMSLK-NLTDLSLRNALITGSIPSGI----GEL-QNLQTLDLSFNNLTGQ----IPRTLFN-IGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 137 ~l~~l~-~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~ 205 (755)
.+..++ +|++|+|++|.+++..+..+ ..+ ++|+.|+|++|.+++. ++..+.. .++|+.|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 345565 99999999999997776544 445 6999999999999863 4555655 46999999999999865
Q ss_pred CCc------ccCCCCCEEEeecCcCCCCCcccc-------c---ccccccccccccc
Q 004413 206 LPT------QKSENLQNIDLSYNHLSGPFPSWV-------T---SNLQMNLVANNFT 246 (755)
Q Consensus 206 ~p~------~~~~~L~~L~Ls~N~l~g~ip~~~-------~---~~~~l~l~~n~~~ 246 (755)
.+. ...++|+.|+|++|.+++..+..+ . ....|++++|++.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 442 234789999999999765443321 1 1234788888765
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=196.01 Aligned_cols=188 Identities=23% Similarity=0.300 Sum_probs=164.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|++++|++.. +| .+..+++|++|+|++|.+++ ++. +..+++|++|+|++|.+.+. + .+..+++|++|++++|
T Consensus 44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCC
Confidence 579999999985 45 68999999999999999985 444 99999999999999999764 3 6899999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.+++ ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+..... +..+++|+.|++++|.+++..+
T Consensus 118 ~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 118 QITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp CCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-
Confidence 9996 443 8999999999999999985433 8899999999999998876443 8899999999999999986544
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+..+++|+.|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 889999999999999999644 38899999999999999984
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=208.20 Aligned_cols=218 Identities=24% Similarity=0.301 Sum_probs=139.3
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|++++|+|+ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+++. +|. .+++|++|+|++|
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCC
Confidence 36788888887 6676665 68888888888887 4555 46788888888888764 444 5677888888887
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCCh--hhh--------------cCCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL--DFV--------------MSLKNL 144 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~--~~l--------------~~l~~L 144 (755)
++++ +|. .+++|+.|++++|+++. +|.. +++|++|++++|.+..... ..+ ..+++|
T Consensus 112 ~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L 183 (622)
T 3g06_A 112 PLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGL 183 (622)
T ss_dssp CCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred cCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCC
Confidence 7774 443 45667777777777663 4442 3566666666665543211 011 123556
Q ss_pred CEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcC
Q 004413 145 TDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHL 224 (755)
Q Consensus 145 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l 224 (755)
+.|+|++|.+++ +|.. +++|+.|++++|.++ .+|. .+++|+.|++++|.|++ +| ...++|+.|+|++|.|
T Consensus 184 ~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 184 QELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP-VLPSELKELMVSGNRL 253 (622)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC-CCCCcCcEEECCCCCC
Confidence 666666666653 3322 355666666666665 3332 23678888888888875 44 4457788888888888
Q ss_pred CCCCcccccccccccccccccccC
Q 004413 225 SGPFPSWVTSNLQMNLVANNFTFD 248 (755)
Q Consensus 225 ~g~ip~~~~~~~~l~l~~n~~~~~ 248 (755)
+ .+|..+.....|+|++|+++..
T Consensus 254 ~-~lp~~~~~L~~L~Ls~N~L~~l 276 (622)
T 3g06_A 254 T-SLPMLPSGLLSLSVYRNQLTRL 276 (622)
T ss_dssp S-CCCCCCTTCCEEECCSSCCCSC
T ss_pred C-cCCcccccCcEEeCCCCCCCcC
Confidence 7 5666443444678888877733
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-22 Score=220.58 Aligned_cols=229 Identities=16% Similarity=0.174 Sum_probs=188.8
Q ss_pred CeEEecCCcCcCCCc----hhhcCCCCCCEEEccCcc---CCCCCcccc-------cCCccCcEEEccccCCCC----CC
Q 004413 1 MLLSVAHNVFSGSVP----RELGNLKELTVLSFGNNN---FSGTLPPEI-------GNLAKLEQLYLNSWGAGG----EI 62 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~L~~n~l~~----~~ 62 (755)
++|+|++|.|+...+ ..|.++++|++|+|++|. +++.+|..+ ..+++|++|+|++|.+.. .+
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 579999999997744 447789999999999974 445566655 789999999999999987 46
Q ss_pred chhhhcCCCCCEEEccCCCCCCCcchh----hcCC---------CCCcEEEccCCCCC-CCCC---ccccCCCCCCeeec
Q 004413 63 PSTYAKLRNMQTLWASDAPFTGKIPDF----IGNW---------TKLKSLRFQGNSFQ-GPIP---SSLSKLASLDSLRI 125 (755)
Q Consensus 63 p~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~l 125 (755)
|..+..+++|++|+|++|.++...+.. +..+ ++|++|+|++|.++ +.++ ..+..+++|++|++
T Consensus 115 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEEC
Confidence 778899999999999999997543333 4444 89999999999997 3444 46778999999999
Q ss_pred CCCCCCCC----Chh-hhcCCCCCCEEEeeCcccc----CCCCccccCCCCCCEEeCCCCCCCCC----CcccccC--CC
Q 004413 126 SDIYNVSS----SLD-FVMSLKNLTDLSLRNALIT----GSIPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFN--IG 190 (755)
Q Consensus 126 ~~n~~~~~----~~~-~l~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~ 190 (755)
++|.+... ..+ .+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++. ++..+.. ++
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC
Confidence 99987632 123 6788999999999999996 56788899999999999999999865 5666643 99
Q ss_pred CCCEEEccCCcCCC----CCCccc---CCCCCEEEeecCcCCCCCc
Q 004413 191 SLNYLFLGNNSLSG----TLPTQK---SENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 191 ~L~~L~Ls~N~l~~----~~p~~~---~~~L~~L~Ls~N~l~g~ip 229 (755)
+|+.|+|++|.+++ .+|... +++|+.|+|++|++++..|
T Consensus 275 ~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999997 366544 5899999999999998775
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-21 Score=203.96 Aligned_cols=100 Identities=14% Similarity=0.234 Sum_probs=75.3
Q ss_pred ccccchhhhhc---CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMR---GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~---~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
++|||||++.. +.|+.|+|||||||+||||+||+.||....... .+...+..+ ..+|.+...+.++.
T Consensus 198 ~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~------~~~~~~~~~----~~~p~~~~~~~~~~ 267 (307)
T 3omv_A 198 VLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD------QIIFMVGRG----YASPDLSKLYKNCP 267 (307)
T ss_dssp TTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH------HHHHHHHTT----CCCCCSTTSCTTSC
T ss_pred CCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH------HHHHHHhcC----CCCCCcccccccch
Confidence 57999999863 569999999999999999999999997654322 122222222 23344444444556
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
..+.+++..||+.+|++||||.||++.|+....
T Consensus 268 ~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 268 KAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp HHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 678899999999999999999999999986543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-21 Score=209.62 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=184.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCC-CcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGT-LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
++|++++|.+.+..+. +.++++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 4689999999877665 66789999999999998765 778889999999999999998877888899999999999999
Q ss_pred C-CCCC-CcchhhcCCCCCcEEEccCC-CCCCC-CCccccCCC-CCCeeecCCCC--CC-CCChhhhcCCCCCCEEEeeC
Q 004413 80 A-PFTG-KIPDFIGNWTKLKSLRFQGN-SFQGP-IPSSLSKLA-SLDSLRISDIY--NV-SSSLDFVMSLKNLTDLSLRN 151 (755)
Q Consensus 80 n-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~l~~n~--~~-~~~~~~l~~l~~L~~L~L~~ 151 (755)
| .+++ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|. +. ...+..+..+++|+.|++++
T Consensus 152 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 9 6775 36777888999999999999 88754 566788899 99999999984 33 22344667889999999999
Q ss_pred cc-ccCCCCccccCCCCCCEEeCCCCC-CCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCc
Q 004413 152 AL-ITGSIPSGIGELQNLQTLDLSFNN-LTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 152 n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip 229 (755)
|. +++..+..+..+++|+.|+|++|. +.......+..+++|+.|++++| ++...-......+..|++++|++++..|
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccC
Confidence 98 777777788899999999999995 33333336788999999999998 4322111122457788899999999998
Q ss_pred cccc
Q 004413 230 SWVT 233 (755)
Q Consensus 230 ~~~~ 233 (755)
.++.
T Consensus 311 ~~~~ 314 (336)
T 2ast_B 311 PTIG 314 (336)
T ss_dssp SSCS
T ss_pred Cccc
Confidence 8765
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-21 Score=205.23 Aligned_cols=93 Identities=25% Similarity=0.360 Sum_probs=73.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.++.++.|+|||||||+||||+| |+.||......+ +... +.++... ..+.++...
T Consensus 211 ~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---~~~~----i~~~~~~--------~~p~~~~~~ 275 (308)
T 4gt4_A 211 IRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---VVEM----IRNRQVL--------PCPDDCPAW 275 (308)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH---HHHH----HHTTCCC--------CCCTTCCHH
T ss_pred CcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HHcCCCC--------CCcccchHH
Confidence 46999999999999999999999999999999 899998654332 2222 2333322 123345567
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|++||||.||++.|+..
T Consensus 276 ~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 276 VYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 88999999999999999999999999853
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-21 Score=205.46 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=74.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.+..++.|+|||||||+||||+| |+.|+......+ +... +.++... +.+..+...
T Consensus 224 ~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~----i~~g~~~--------~~p~~~~~~ 288 (329)
T 4aoj_A 224 IRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AIDC----ITQGREL--------ERPRACPPE 288 (329)
T ss_dssp GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHHH----HHHTCCC--------CCCTTCCHH
T ss_pred ccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH---HHHH----HHcCCCC--------CCcccccHH
Confidence 46999999999999999999999999999999 899998654332 2222 2223211 112334456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++.+||+.+|++||||.||+++|+...+.
T Consensus 289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 78899999999999999999999999987654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=179.59 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=103.1
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.++.++++++ .+|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3555666655 344333 3466777777777665545556666677777777666665555556666667777776666
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
+++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.......+..+++|+.|+|++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 66544455666666666666666666544444555666666666655555444444555555555555555443
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCC
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNI 189 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 189 (755)
+.+++|+.|+++.|+++|.+|..++.+
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 223445555555555555555544443
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-21 Score=202.33 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=74.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.++.++.|+|||||||+||||+| |+.|+......+ +.. .+..+... ..+..+...
T Consensus 194 ~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~----~i~~~~~~--------~~p~~~~~~ 258 (299)
T 4asz_A 194 IRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE----CITQGRVL--------QRPRTCPQE 258 (299)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH----HHHHTCCC--------CCCTTCCHH
T ss_pred hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHH----HHHcCCCC--------CCCccchHH
Confidence 46999999999999999999999999999999 899998654332 222 22233221 123334457
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++..||+.+|++||||.||+++|+.....
T Consensus 259 ~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 259 VYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 88899999999999999999999999986543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-21 Score=207.90 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=184.7
Q ss_pred CeEEecCCcCcCCCc----hhhcCCC-CCCEEEccCccCCCCCcccccCC-----ccCcEEEccccCCCCCCchhhh---
Q 004413 1 MLLSVAHNVFSGSVP----RELGNLK-ELTVLSFGNNNFSGTLPPEIGNL-----AKLEQLYLNSWGAGGEIPSTYA--- 67 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~--- 67 (755)
++|+|++|.|++..+ ..|.+++ +|++|+|++|.+++..+..|..+ ++|++|+|++|.+++..+..+.
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999998877 7888999 99999999999998878777775 9999999999999887776544
Q ss_pred -cC-CCCCEEEccCCCCCCCcchhhc----C-CCCCcEEEccCCCCCCCCC----ccccCCC-CCCeeecCCCCCCCCCh
Q 004413 68 -KL-RNMQTLWASDAPFTGKIPDFIG----N-WTKLKSLRFQGNSFQGPIP----SSLSKLA-SLDSLRISDIYNVSSSL 135 (755)
Q Consensus 68 -~l-~~L~~L~L~~n~l~~~~p~~~~----~-l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~~~~~~~ 135 (755)
.+ ++|++|+|++|.+++..+..+. . .++|++|+|++|.++...+ ..+..++ +|++|++++|.+.....
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 44 8999999999999876665543 3 3699999999999985443 3445665 99999999999887776
Q ss_pred h----hhcCC-CCCCEEEeeCccccCC----CCccccC-CCCCCEEeCCCCCCCCCCc----ccccCCCCCCEEEccCCc
Q 004413 136 D----FVMSL-KNLTDLSLRNALITGS----IPSGIGE-LQNLQTLDLSFNNLTGQIP----RTLFNIGSLNYLFLGNNS 201 (755)
Q Consensus 136 ~----~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~ 201 (755)
. .+..+ ++|+.|+|++|.+++. ++..+.. .++|+.|+|++|.+++..+ ..+..+++|+.|+|++|.
T Consensus 185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 5 34455 5999999999999864 4445555 4699999999999997554 344678999999999999
Q ss_pred CCCCCCc---------ccCCCCCEEEeecCcCCCCCcccc
Q 004413 202 LSGTLPT---------QKSENLQNIDLSYNHLSGPFPSWV 232 (755)
Q Consensus 202 l~~~~p~---------~~~~~L~~L~Ls~N~l~g~ip~~~ 232 (755)
+.+..+. ...++|+.||+++|++.+..|..+
T Consensus 265 l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred ccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 6543222 123679999999999987655443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=202.56 Aligned_cols=216 Identities=25% Similarity=0.305 Sum_probs=160.4
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|+ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|++|.+++. |. .+++|+.|++++|
T Consensus 64 ~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 64 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGN 131 (622)
T ss_dssp SEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSS
T ss_pred cEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCC
Confidence 46888888888 4554 5678888888888887 4565 667888888888887653 33 4566777777777
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCcc---c--------------cCCCCCCeeecCCCCCCCCChhhhcCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS---L--------------SKLASLDSLRISDIYNVSSSLDFVMSLKN 143 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l--------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 143 (755)
+++. +|.. +++|++|+|++|.+++ +|.. + ..+++|+.|++++|.+..... .+++
T Consensus 132 ~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~ 202 (622)
T 3g06_A 132 QLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT----LPSE 202 (622)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred CCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC----ccch
Confidence 7663 4442 3666777777766663 2222 2 223788899999888765332 3578
Q ss_pred CCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCc
Q 004413 144 LTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNH 223 (755)
Q Consensus 144 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~ 223 (755)
|+.|++++|.++ .+|. .+++|+.|+|++|.+++ +| ..+++|+.|+|++|.|+. +|. ..++|+.|+|++|+
T Consensus 203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~-~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM-LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSC
T ss_pred hhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc-ccccCcEEeCCCCC
Confidence 999999999998 4553 35899999999999995 66 456899999999999994 555 66899999999999
Q ss_pred CCCCCccccc--c-cccccccccccccC
Q 004413 224 LSGPFPSWVT--S-NLQMNLVANNFTFD 248 (755)
Q Consensus 224 l~g~ip~~~~--~-~~~l~l~~n~~~~~ 248 (755)
|+ .+|..+. . ...|+|++|+++..
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 99 7888776 2 33589999998743
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=191.36 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=172.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCc-hhhhcCCCCCE-EEccC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-STYAKLRNMQT-LWASD 79 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~ 79 (755)
+++-++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5677888888 6787663 689999999999985555679999999999999999877665 46888988876 56667
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCC-CCCCCChhhhcCCC-CCCEEEeeCccccCC
Q 004413 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDI-YNVSSSLDFVMSLK-NLTDLSLRNALITGS 157 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~ 157 (755)
|+++...|..|.++++|++|++++|+++...+..+....++..|++.++ .+.......+..+. .++.|+|++|.++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 8888777788999999999999999998666666777778888888764 45445555555554 5888999999998 4
Q ss_pred CCccccCCCCCCEEeCCC-CCCCCCCc-ccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcc
Q 004413 158 IPSGIGELQNLQTLDLSF-NNLTGQIP-RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPS 230 (755)
Q Consensus 158 ~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~ 230 (755)
++.......+|+.|++++ |.++ .+| ..|..+++|+.|+|++|+|+ .+|...+.+|+.|.+.++.--..+|.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCCcCcCCC
Confidence 555555667899999975 5666 455 56788999999999999998 56666778888888777655456664
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=198.60 Aligned_cols=183 Identities=21% Similarity=0.273 Sum_probs=154.1
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|+|++|++++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 777664 78999999999997 566 457999999999999996 777 665 99999999
Q ss_pred CCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCC
Q 004413 103 GNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182 (755)
Q Consensus 103 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 182 (755)
+|.+++ +|. .+++|+.|++++|.+..... .+++|+.|+|++|.+++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999996 666 68999999999998876433 67899999999999996 676 65 89999999999999 67
Q ss_pred cccccCCCCC-------CEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc
Q 004413 183 PRTLFNIGSL-------NYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 183 p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
|. +.. +| +.|+|++|+|+ .+|... .++|+.|+|++|+|++.+|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 76 554 77 99999999999 466543 48999999999999999988776
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=198.18 Aligned_cols=175 Identities=21% Similarity=0.228 Sum_probs=104.3
Q ss_pred cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
+|+.|+|++|++++ +|..+ +++|++|+|++|+++ .+| ..+++|++|+|++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66677777666654 45433 256677777777666 455 345667777777776664 555 443 66777777
Q ss_pred CCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCC
Q 004413 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 206 (755)
Q Consensus 127 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (755)
+|.+..... .+++|+.|+|++|.+++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++|.|+ .+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666655322 45666777777776664 443 45666777777777664 555 43 66777777777666 44
Q ss_pred CcccCCCC-------CEEEeecCcCCCCCcccccc---ccccccccccccc
Q 004413 207 PTQKSENL-------QNIDLSYNHLSGPFPSWVTS---NLQMNLVANNFTF 247 (755)
Q Consensus 207 p~~~~~~L-------~~L~Ls~N~l~g~ip~~~~~---~~~l~l~~n~~~~ 247 (755)
|. +..+| +.|+|++|+|+ .+|..+.. ...|+|++|++++
T Consensus 196 p~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 196 PA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred hh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 44 33455 66777777766 45655441 2246666666653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-21 Score=217.05 Aligned_cols=247 Identities=18% Similarity=0.169 Sum_probs=186.8
Q ss_pred CeEEecCCcCcCCCchhhc-CCC----CCCEEEccCccCCC----CCcccccCCccCcEEEccccCCCCCCchhhh----
Q 004413 1 MLLSVAHNVFSGSVPRELG-NLK----ELTVLSFGNNNFSG----TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA---- 67 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~-~l~----~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---- 67 (755)
++|+|++|.+++..+..+. .++ +|++|+|++|.++. .++..+..+++|++|+|++|.+....+..+.
T Consensus 59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 5799999999876554443 355 69999999999884 4588899999999999999998654444333
Q ss_pred -cCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCCCCCCCCCcccc-----CCCCCCeeecCCCCCCCCC---
Q 004413 68 -KLRNMQTLWASDAPFTGK----IPDFIGNWTKLKSLRFQGNSFQGPIPSSLS-----KLASLDSLRISDIYNVSSS--- 134 (755)
Q Consensus 68 -~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~~~~~~--- 134 (755)
.+++|++|++++|.++.. ++..+..+++|++|++++|.++...+..+. .+++|+.|++++|.+....
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 256899999999998863 466677789999999999998754343333 3669999999999877653
Q ss_pred -hhhhcCCCCCCEEEeeCccccCCC-----CccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCC
Q 004413 135 -LDFVMSLKNLTDLSLRNALITGSI-----PSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 135 -~~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+..+..+++|++|++++|.+++.. +..+..+++|+.|+|++|.+++. ++..+..+++|+.|++++|.+++
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 446678899999999999887542 22334688999999999999854 67777789999999999999875
Q ss_pred CCCccc-------CCCCCEEEeecCcCCCC----Cccccc---cccccccccccccc
Q 004413 205 TLPTQK-------SENLQNIDLSYNHLSGP----FPSWVT---SNLQMNLVANNFTF 247 (755)
Q Consensus 205 ~~p~~~-------~~~L~~L~Ls~N~l~g~----ip~~~~---~~~~l~l~~n~~~~ 247 (755)
..+... .++|+.|++++|.+++. +|.++. ....|++++|.++.
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 332211 25899999999999865 454443 23358899888764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=172.80 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=122.8
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+.++++++.++ .+|..+ .++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56677777766 455433 356777777777776555556667777777777777776544455666667777777766
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcc
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 184 (755)
.+++..+..+ ..+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..+.
T Consensus 87 ~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 87 QLQSLPNGVF------------------------DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTT------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHhHh------------------------cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 6664333333 4455566666666666655666677788888888888888865555
Q ss_pred cccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc
Q 004413 185 TLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT 233 (755)
Q Consensus 185 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~ 233 (755)
.+..+++|+.|++++|.+.+.. ++|+.|+++.|.++|.+|.+++
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~~~-----~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDCTC-----PGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCCCT-----TTTHHHHHHHHHCTTTBBCTTS
T ss_pred HhccCCCccEEEecCCCeecCC-----CCHHHHHHHHHhCCceeeccCc
Confidence 6778888888888888777543 4688889999999999998765
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-20 Score=200.79 Aligned_cols=96 Identities=25% Similarity=0.289 Sum_probs=73.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.++.++.|+|||||||+||||+| |+.||......+ .+...+.+|.... .+..+..+
T Consensus 251 ~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~------~~~~~i~~g~~~~--------~p~~~~~~ 316 (353)
T 4ase_A 251 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE------EFCRRLKEGTRMR--------APDYTTPE 316 (353)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH------HHHHHHHHTCCCC--------CCTTCCHH
T ss_pred ccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH------HHHHHHHcCCCCC--------CCccCCHH
Confidence 46999999999999999999999999999999 999997644322 1223333332211 12233446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..||+.+|++||||.||++.|+...+
T Consensus 317 ~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 7789999999999999999999999987654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-19 Score=183.41 Aligned_cols=172 Identities=24% Similarity=0.294 Sum_probs=96.1
Q ss_pred cCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCe
Q 004413 43 GNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122 (755)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 122 (755)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3445555555555554332 2 24455555555555555553222 5555555555555555542 22 2555555555
Q ss_pred eecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcC
Q 004413 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202 (755)
Q Consensus 123 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 202 (755)
|++++|.+... +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|++++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 55555544432 3455566666666666666643 456666777777777777764333 66677777777777777
Q ss_pred CCCCCcccCCCCCEEEeecCcCCC
Q 004413 203 SGTLPTQKSENLQNIDLSYNHLSG 226 (755)
Q Consensus 203 ~~~~p~~~~~~L~~L~Ls~N~l~g 226 (755)
++.......++|+.|++++|+++.
T Consensus 191 ~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred CCChhhccCCCCCEEECcCCcccC
Confidence 654332334677777777777764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-21 Score=214.31 Aligned_cols=248 Identities=15% Similarity=0.099 Sum_probs=191.6
Q ss_pred CeEEecCCcCcCCCchhhcC-----CCCCCEEEccCccCCCC----CcccccCCccCcEEEccccCCCCCCchhhh----
Q 004413 1 MLLSVAHNVFSGSVPRELGN-----LKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYLNSWGAGGEIPSTYA---- 67 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---- 67 (755)
++|+|++|.+++..+..+.. .++|++|+|++|.+++. ++..+..+++|++|+|++|.+....+..+.
T Consensus 116 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh
Confidence 57999999998665554433 56899999999999864 356677789999999999998655444443
Q ss_pred -cCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCCCCCCCC-----CccccCCCCCCeeecCCCCCCCCC---
Q 004413 68 -KLRNMQTLWASDAPFTGK----IPDFIGNWTKLKSLRFQGNSFQGPI-----PSSLSKLASLDSLRISDIYNVSSS--- 134 (755)
Q Consensus 68 -~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~~~~~~--- 134 (755)
.+++|++|++++|.++.. ++..+..+++|++|++++|.++... +..+..+++|++|++++|.+....
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 367999999999999864 5778888999999999999987432 222346899999999999877643
Q ss_pred -hhhhcCCCCCCEEEeeCccccCCCCcccc-----CCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCC
Q 004413 135 -LDFVMSLKNLTDLSLRNALITGSIPSGIG-----ELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 135 -~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+..+..+++|++|+|++|.+.+..+..+. ..++|+.|+|++|.+++. ++..+..+++|+.|++++|.+++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 34566789999999999998754333332 236999999999999865 56677788999999999999986
Q ss_pred CCCccc-------CCCCCEEEeecCcCCC----CCccccc---ccccccccccccccC
Q 004413 205 TLPTQK-------SENLQNIDLSYNHLSG----PFPSWVT---SNLQMNLVANNFTFD 248 (755)
Q Consensus 205 ~~p~~~-------~~~L~~L~Ls~N~l~g----~ip~~~~---~~~~l~l~~n~~~~~ 248 (755)
..+... .++|+.|+|++|.+++ .+|..+. ....|++++|+++..
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 433321 3589999999999986 7777665 334689999988743
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=197.87 Aligned_cols=183 Identities=23% Similarity=0.353 Sum_probs=108.4
Q ss_pred ecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCC
Q 004413 5 VAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 5 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
|..+.+...++ +..|++|+.|+|++|.+. .++ .|..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 34444443332 345666666677766665 233 46666667777776666655433 6666667777776666663
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
++ .+..+++|++|+|++|.+++ + ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+++..| +..
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 32 46666666666666666663 2 3456666666666666655543 455566666666666666664444 556
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
+++|+.|+|++|++++ + ..+..+++|+.|+|++|+++
T Consensus 174 l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCc
Confidence 6666666666666653 2 24555666666666666655
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=177.21 Aligned_cols=184 Identities=23% Similarity=0.330 Sum_probs=155.7
Q ss_pred ecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCC
Q 004413 5 VAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 5 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
+..+.+.+..+ +..+++|+.|++++|.++. ++ .+..+++|++|+|++|.+++..+ +.++++|++|++++|.+++
T Consensus 31 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 31 LKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp TTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred hcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC
Confidence 44455554332 4578899999999999974 44 48889999999999999977544 8999999999999999985
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+++..+ +..
T Consensus 105 -~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 105 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 44 489999999999999999853 5688999999999999988765 678899999999999999996655 889
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
+++|+.|+|++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 177 l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9999999999999985 54 48899999999999999985
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-20 Score=196.71 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=73.7
Q ss_pred ccccchhhhhcC------CCCccceeeeehheeehhhhCCcCCCCCchhh----H----HHHHHHHHHHhhcCccccccC
Q 004413 569 HGYLAPEYAMRG------HLTEKADVFSFGVAALEIISGRANSDNSLDME----K----IYLLEWAWNLHENNQSLGLVD 634 (755)
Q Consensus 569 ~gy~aPE~~~~~------~~t~ksDVysfGvvllElltg~~p~~~~~~~~----~----~~l~~~~~~~~~~~~~~~~~d 634 (755)
++|||||++.+. .++.|+|||||||+||||+||+.|+......+ . ....+.+..... .+.++
T Consensus 176 ~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~r 251 (303)
T 3hmm_A 176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC----EQKLR 251 (303)
T ss_dssp GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT----TSCCC
T ss_pred ccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHh----cccCC
Confidence 579999998754 57899999999999999999987753221100 0 000111222221 22344
Q ss_pred CCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 635 PTLTE--FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 635 ~~l~~--~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
|.+.. .+.++...+.+++.+||+.+|++||||.||+++|+...+.
T Consensus 252 p~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 252 PNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 55532 2346777899999999999999999999999999876543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=185.61 Aligned_cols=178 Identities=21% Similarity=0.168 Sum_probs=136.4
Q ss_pred CCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhh-cCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc
Q 004413 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYA-KLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 102 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 102 (755)
-+.++++++.++ .+|..+. ..|+.|+|++|++++..+..|. ++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 357788888776 5666554 4577888888888766666676 78888888888888876666678888888888888
Q ss_pred CCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccc---cCCCCCCEEeCCCCCCC
Q 004413 103 GNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGI---GELQNLQTLDLSFNNLT 179 (755)
Q Consensus 103 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~ 179 (755)
+|+++...+..|..+++|+.|+|++|.+....+..|..+++|+.|+|++|.++...+..+ ..+++|+.|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888876666677888888888888888777777778888888888888888885544444 56899999999999999
Q ss_pred CCCcccccCCCC--CCEEEccCCcCCC
Q 004413 180 GQIPRTLFNIGS--LNYLFLGNNSLSG 204 (755)
Q Consensus 180 ~~~p~~l~~l~~--L~~L~Ls~N~l~~ 204 (755)
+..+..+..++. |+.|+|++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 655567777776 4889999998874
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=166.36 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=110.6
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+.++++++.++ .+|..+. ++|++|+|++|.+.+..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 4555443 56777777777776655556677777777777777777656667777777777777777
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCC
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 180 (755)
.++...+..|..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775444456667777777777777776666677778888888888888887777778889999999999998864
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=180.48 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=171.1
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcch-hhcCCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPD-FIGNWTKL 96 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L 96 (755)
++.+. -++++.++++++ .+|..+. ++|++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.++++|
T Consensus 6 ~C~C~-~~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SSEEE-TTEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccEee-CCEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 44443 367899999998 7887663 6899999999999866667899999999999999998876664 67889988
Q ss_pred cE-EEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeC-ccccCCCCccccCCC-CCCEEeC
Q 004413 97 KS-LRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRN-ALITGSIPSGIGELQ-NLQTLDL 173 (755)
Q Consensus 97 ~~-L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~L 173 (755)
+. +.+..|+++...|..|..+++|++|++++|.+.......+....++..|++.+ +.+....+..|..+. .|+.|+|
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 76 56677999977788999999999999999998877776677777888999976 566655555666664 6899999
Q ss_pred CCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc---CCCCCEEEeecCcCCCCCccccc-ccccccccc
Q 004413 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK---SENLQNIDLSYNHLSGPFPSWVT-SNLQMNLVA 242 (755)
Q Consensus 174 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~~L~~L~Ls~N~l~g~ip~~~~-~~~~l~l~~ 242 (755)
++|+++ .++.......+|+.|++.+|+..+.+|... .++|++|||++|+|+ .+|.... ....|.+..
T Consensus 162 ~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232 (350)
T ss_dssp CSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTT
T ss_pred cccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhcc
Confidence 999999 566666677889999998644444666543 379999999999998 5665433 333444333
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-19 Score=188.85 Aligned_cols=112 Identities=36% Similarity=0.563 Sum_probs=97.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
.+|+|||.+.++.++.++|||||||+++||+||+.|+......+.....+|.......+.+..++++.+ ...+.+....
T Consensus 205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (321)
T 2qkw_B 205 LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRK 284 (321)
T ss_dssp TTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHH
T ss_pred ccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHH
Confidence 359999999999999999999999999999999999976655555567788888777888888888887 4567788899
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+.+++..|++.+|++||||.||++.|+......
T Consensus 285 l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 285 FGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999876553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=182.53 Aligned_cols=177 Identities=19% Similarity=0.098 Sum_probs=137.5
Q ss_pred CcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhc-CCCCCcEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 48 LEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIG-NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 48 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
-+.++++++++.. +|..+. ..++.|+|++|++++..+..|. ++++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4678888888854 565443 4588899999998876666676 88899999999999987777788889999999999
Q ss_pred CCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccc---cCCCCCCEEEccCCcCC
Q 004413 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTL---FNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 127 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~ 203 (755)
+|.+.......|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 988887777788888999999999999888788888889999999999999985333344 56888999999999988
Q ss_pred CCCCccc--CCC--CCEEEeecCcCCCC
Q 004413 204 GTLPTQK--SEN--LQNIDLSYNHLSGP 227 (755)
Q Consensus 204 ~~~p~~~--~~~--L~~L~Ls~N~l~g~ 227 (755)
+..+..+ .+. ++.|+|++|++...
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 5333221 233 47789999988753
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=165.46 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=113.3
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCc-hhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
+.+++++|.++ .+|..+. ..+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777766 4555443 345677777777765543 3466777777777777777755555677777777777777
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|.+++..+..|..+++|++|+|++|.+....+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777777777777777776666677778888888888888888888889999999999999999886544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=191.21 Aligned_cols=193 Identities=22% Similarity=0.267 Sum_probs=164.0
Q ss_pred CCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 004413 21 LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLR 100 (755)
Q Consensus 21 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 100 (755)
+..+..+.|..+.+.... .+..|++|+.|+|++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345566677777776443 367889999999999998654 4 58999999999999999996554 89999999999
Q ss_pred ccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCC
Q 004413 101 FQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 180 (755)
Q Consensus 101 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 180 (755)
|++|.+++ ++ .+..+++|+.|+|++|.+... +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999985 44 699999999999999988764 5688999999999999999965 678999999999999999997
Q ss_pred CCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCC
Q 004413 181 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGP 227 (755)
Q Consensus 181 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ 227 (755)
..| +..+++|+.|+|++|.|++......+++|+.|+|++|++++.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 655 899999999999999999764434568999999999999853
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=164.22 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=131.3
Q ss_pred cEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCC
Q 004413 49 EQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDI 128 (755)
Q Consensus 49 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 128 (755)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67888888885 4565443 68999999999998766668888999999999999998777888999999999999999
Q ss_pred CCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCC
Q 004413 129 YNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204 (755)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (755)
.+.......+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8887777778889999999999999998888889999999999999999997777778889999999999998874
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=164.63 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=135.1
Q ss_pred CcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 48 LEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 48 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
-+.+++++|.++. +|..+. ..+++|+|++|++++..+ ..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4689999998864 565543 457899999999986544 458889999999999999997777789999999999999
Q ss_pred CCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCC
Q 004413 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 206 (755)
Q Consensus 127 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (755)
+|.+....+..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+....
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998888888999999999999999999888889999999999999999999877889999999999999999988654
Q ss_pred C
Q 004413 207 P 207 (755)
Q Consensus 207 p 207 (755)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=163.68 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred CCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..|.++++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666665 4554443 6667777777777666666666677777777777776644445566677777777777
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|++++..+..|..+++|+.|++++|.+.. .+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+....+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 77765555556667777777777766653 33455777788888888888887767778889999999999999886543
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-18 Score=184.12 Aligned_cols=109 Identities=45% Similarity=0.713 Sum_probs=92.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc--hhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL--DMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~ 645 (755)
.+|+|||.+..+.++.++|||||||+++||+||+.|++... ......+.+|+...........+++..+ ..++.++.
T Consensus 199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (326)
T 3uim_A 199 IGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEV 278 (326)
T ss_dssp GGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHH
T ss_pred cCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHH
Confidence 46999999999999999999999999999999999986321 1122346778888777777888888877 46778889
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
..+.+++..|++.+|.+||||.||+++|++..
T Consensus 279 ~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 279 EQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp HHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 99999999999999999999999999999743
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=159.44 Aligned_cols=157 Identities=20% Similarity=0.202 Sum_probs=137.5
Q ss_pred cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecC
Q 004413 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 126 (755)
+.+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|+.|+|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4678999888884 5565443 889999999999998888999999999999999999986666778999999999999
Q ss_pred CCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCC
Q 004413 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 206 (755)
Q Consensus 127 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (755)
+|.+.......+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+....
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99998887778899999999999999999 78888999999999999999999766677889999999999999998654
Q ss_pred C
Q 004413 207 P 207 (755)
Q Consensus 207 p 207 (755)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=158.57 Aligned_cols=152 Identities=21% Similarity=0.264 Sum_probs=75.9
Q ss_pred cCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCe
Q 004413 43 GNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122 (755)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 122 (755)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666654 333 4555666666666666444 2234555666666666666665444555555555555
Q ss_pred eecCCCCCCCCChhhhcCCCCCCEEEeeCcc-ccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCc
Q 004413 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNAL-ITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201 (755)
Q Consensus 123 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 201 (755)
|++++|.+....+..+..+++|+.|+|++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 5555544444334444444444444444444 22 222 34444445555555554442 22 34444444444444444
Q ss_pred C
Q 004413 202 L 202 (755)
Q Consensus 202 l 202 (755)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=160.74 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=133.3
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK 97 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 97 (755)
...+++|++|+|++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 467789999999999998 566 68999999999999997643 35788999999999999999987888999999999
Q ss_pred EEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCC
Q 004413 98 SLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177 (755)
Q Consensus 98 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 177 (755)
+|++++|.+++..+..+..+++|+.|++++|...... +.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999999999878888999999999999999833333 368899999999999999985 44 78899999999999999
Q ss_pred CCC
Q 004413 178 LTG 180 (755)
Q Consensus 178 l~~ 180 (755)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-19 Score=200.90 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=150.7
Q ss_pred cCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC-------------CCCCCchhhhcCCCCCEEE-ccCCCCCC
Q 004413 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-------------AGGEIPSTYAKLRNMQTLW-ASDAPFTG 84 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 84 (755)
..+++|+.|+|++|.++ .+|..+++|++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56889999999999997 789999999999999997775 5566777888888888888 5555433
Q ss_pred Ccch------hhcC--CCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccC
Q 004413 85 KIPD------FIGN--WTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 85 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 156 (755)
.++. .+.. ...|+.|+|++|.+++ +|. +..+++|+.|+|++|.+. ..+..+..+++|+.|+|++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 1111 1258889999998885 666 888889999999888877 445678888888999999888885
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCC-cccccCCCCCCEEEccCCcCCCCCCcc-----cCCCCCEEEe
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQI-PRTLFNIGSLNYLFLGNNSLSGTLPTQ-----KSENLQNIDL 219 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~-----~~~~L~~L~L 219 (755)
+| .++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.+|.. .+++|+.||+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7888888999999999888765 888888888999999988888766542 1477888764
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-18 Score=180.15 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=71.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+|||||||+|+||+||+.||......+. . ..... +. +.+.+.+......+
T Consensus 220 ~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~---~---~~i~~-~~------~~~~~~~~~~s~~~ 286 (336)
T 4g3f_A 220 ETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL---C---LKIAS-EP------PPIREIPPSCAPLT 286 (336)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC---H---HHHHH-SC------CGGGGSCTTSCHHH
T ss_pred ccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH---H---HHHHc-CC------CCchhcCccCCHHH
Confidence 469999999999999999999999999999999999975443221 1 11111 11 11112222334467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.++...|++.||.+|||+.|+++.|......
T Consensus 287 ~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 287 AQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 7788999999999999999999988765544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.3e-17 Score=165.63 Aligned_cols=171 Identities=21% Similarity=0.285 Sum_probs=135.8
Q ss_pred CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
++.++..+++++|.+++ ++ .+..+++|++|++++|.+.. ++ .+..+++|++|+|++|++++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35567777888888873 33 57778888888888888864 44 67888888888888888885443 8888888888
Q ss_pred EccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCC
Q 004413 100 RFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 179 (755)
+|++|++++ ++. +.. ++|+.|++++|.+... +.+..+++|+.|+|++|.+++. + .+..+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 888888874 443 223 8888888888877664 4588889999999999999864 3 6888999999999999999
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCC
Q 004413 180 GQIPRTLFNIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 180 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (755)
+. ..+..+++|+.|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6788999999999999999854
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-18 Score=180.71 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..|+.|+||||+||+|+||+||+.||......+ + ..... .+... .+ +......+
T Consensus 189 ~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~---~---~~~i~-~~~~~-----~~---~~~~s~~~ 253 (350)
T 4b9d_A 189 PYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN---L---VLKII-SGSFP-----PV---SLHYSYDL 253 (350)
T ss_dssp CTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH---H---HHHHH-HTCCC-----CC---CTTSCHHH
T ss_pred ccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH---H---HHHHH-cCCCC-----CC---CccCCHHH
Confidence 57999999999999999999999999999999999997654322 1 22222 22211 11 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.||++|||+.|+++
T Consensus 254 ~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 254 RSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 77889999999999999999975
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-17 Score=166.33 Aligned_cols=171 Identities=21% Similarity=0.215 Sum_probs=143.8
Q ss_pred CCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCee
Q 004413 44 NLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSL 123 (755)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 123 (755)
++.++..+++++|.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 467788889999998654 3 6788999999999999998 455 68899999999999999995444 9999999999
Q ss_pred ecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 124 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 124 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
++++|.+..... +.. ++|+.|+|++|.+++. + .+..+++|+.|+|++|++++ ++ .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence 999998876432 333 8999999999999864 3 58899999999999999995 44 6889999999999999999
Q ss_pred CCCCcccCCCCCEEEeecCcCCCC
Q 004413 204 GTLPTQKSENLQNIDLSYNHLSGP 227 (755)
Q Consensus 204 ~~~p~~~~~~L~~L~Ls~N~l~g~ 227 (755)
+.......++|+.|++++|++++.
T Consensus 164 ~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred chHHhccCCCCCEEeCCCCcccCC
Confidence 773334558999999999999865
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-17 Score=171.45 Aligned_cols=106 Identities=26% Similarity=0.449 Sum_probs=81.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhh-cCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHE-NNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+. +.++.++||||||++++||+||+.|++...... .+..+...... ...+.+.+++.+...+......
T Consensus 199 ~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (307)
T 2nru_A 199 TAYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHREPQ--LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEA 275 (307)
T ss_dssp GGGCCHHHHT-TEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS--BTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHH
T ss_pred cCcCChHHhc-CCCCccchhHHHHHHHHHHHHCCCCcccCcchH--HHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 4699999875 568999999999999999999999987643321 12222222222 2234456677776677788889
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..|++.+|.+||++.+|++.|+...
T Consensus 276 l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 276 MYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 999999999999999999999999998754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-18 Score=196.91 Aligned_cols=189 Identities=19% Similarity=0.137 Sum_probs=158.6
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCcc-------------CCCCCcccccCCccCcEEE-ccccCCCCCCch---
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNN-------------FSGTLPPEIGNLAKLEQLY-LNSWGAGGEIPS--- 64 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~p~--- 64 (755)
.|+|++|+|+ .+|..|++|++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.. ++.
T Consensus 353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l 430 (567)
T 1dce_A 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRSKFL 430 (567)
T ss_dssp SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHH
T ss_pred eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhhhhh
Confidence 5789999997 789999999999999998875 5667788899999999998 56554321 111
Q ss_pred ---hhhc--CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhc
Q 004413 65 ---TYAK--LRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM 139 (755)
Q Consensus 65 ---~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 139 (755)
.+.. ...|+.|+|++|.+++ +|. |+++++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+... +.+.
T Consensus 431 ~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p~l~ 505 (567)
T 1dce_A 431 LENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVA 505 (567)
T ss_dssp HHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred hcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--cccC
Confidence 1111 1369999999999995 776 999999999999999999 8899999999999999999998874 3899
Q ss_pred CCCCCCEEEeeCccccCCC-CccccCCCCCCEEeCCCCCCCCCCcc---cccCCCCCCEEEc
Q 004413 140 SLKNLTDLSLRNALITGSI-PSGIGELQNLQTLDLSFNNLTGQIPR---TLFNIGSLNYLFL 197 (755)
Q Consensus 140 ~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 197 (755)
.+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++..|. .+..+++|+.|++
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999887 99999999999999999999975442 2345899999975
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-17 Score=191.21 Aligned_cols=213 Identities=16% Similarity=0.093 Sum_probs=115.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEE-----EccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEE
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVL-----SFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLW 76 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L-----~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 76 (755)
.|+|..|.+.. ++..+.....|..+ ++..|.+. ..|..|..+.+|+.|+|++|.+. .+|..+.++++|++|+
T Consensus 177 ~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 177 KIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY 253 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB
T ss_pred eEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE
Confidence 46777777774 34333333333332 33334443 45777888899999999999886 6677777889999999
Q ss_pred ccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccC
Q 004413 77 ASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG 156 (755)
Q Consensus 77 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 156 (755)
|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|..|++|++|+|++|.+... +..|..+++|+.|+|++|.+++
T Consensus 254 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCS
T ss_pred eeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCC
Confidence 9999988 78888888999999999999988 7788888899999999998877644 4458888999999999999988
Q ss_pred CCCccccCCCC-CCEEeCCCCCCCCCCcccccCCCCCCEEEccCC----cCCCCCCc----cc--CCCCCEEEeecCcCC
Q 004413 157 SIPSGIGELQN-LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN----SLSGTLPT----QK--SENLQNIDLSYNHLS 225 (755)
Q Consensus 157 ~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----~l~~~~p~----~~--~~~L~~L~Ls~N~l~ 225 (755)
.+|..+..+.. +..|+|++|.+++.+|.. |..|+++.| ...+.++. .. ...+....+++|-+.
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 88877755422 234788899998877764 445556655 22222222 11 234556677777775
Q ss_pred C
Q 004413 226 G 226 (755)
Q Consensus 226 g 226 (755)
+
T Consensus 405 ~ 405 (727)
T 4b8c_D 405 Q 405 (727)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-17 Score=167.68 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=62.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+. ++++.|+|||||||+|+||+||+.|+........ +...+..+.....++ . .....+
T Consensus 194 p~YmAPE~~~-~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~------~~~~i~~~~~~~~~~----~---~~~~~~ 259 (290)
T 3fpq_A 194 PEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ------IYRRVTSGVKPASFD----K---VAIPEV 259 (290)
T ss_dssp CCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH------HHHHHTTTCCCGGGG----G---CCCHHH
T ss_pred ccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH------HHHHHHcCCCCCCCC----c---cCCHHH
Confidence 6799999876 5799999999999999999999999975433221 122222221111111 1 112246
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..||+.+|++|||+.|+++
T Consensus 260 ~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 260 KEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 77889999999999999999864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-16 Score=150.80 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=68.5
Q ss_pred cEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCC
Q 004413 49 EQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPD-FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD 127 (755)
Q Consensus 49 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 127 (755)
++|++++|++ +.+|..+. .+|++|++++|++++..+. .|..+++|++|+|++|.+++..|..|..+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------- 79 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------- 79 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc--------
Confidence 4566666665 33444332 2555666666655543332 2555555555555555555444444444444
Q ss_pred CCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCC
Q 004413 128 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGT 205 (755)
Q Consensus 128 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (755)
|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++.
T Consensus 80 ----------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 80 ----------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ----------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ----------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 44444444445544455555555566666666666555555555555555555555555543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-17 Score=190.46 Aligned_cols=191 Identities=20% Similarity=0.136 Sum_probs=123.4
Q ss_pred CCCCEEEccCccCCCCCcccccCCccCcEEE-----ccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 22 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLY-----LNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 22 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~-----L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
++++.|+|.+|.+.. .+..+.....|..+. +..|.+. ..+..|..+++|+.|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 678899999998874 444443333333333 3333332 45778999999999999999998 788888899999
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCC
Q 004413 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFN 176 (755)
Q Consensus 97 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 176 (755)
++|+|++|.|+ .+|..|..|++|+.|+|++|.+. ..+..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 89999999999999999999988 44677899999999999999998 78888999999999999999
Q ss_pred CCCCCCcccccCCCC-CCEEEccCCcCCCCCCcccCCCCCEEEeecC
Q 004413 177 NLTGQIPRTLFNIGS-LNYLFLGNNSLSGTLPTQKSENLQNIDLSYN 222 (755)
Q Consensus 177 ~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N 222 (755)
.+++.+|..+..+.. +..|+|++|.+++.+|. .|..|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~----~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH----ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc----ccceeEeecc
Confidence 999988887765432 23478999999987765 5778888887
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-17 Score=170.02 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=65.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+....|+.|+||||+||+++||+||+.||......+ +.. .+.++ ..+.+.. .......+
T Consensus 234 p~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~----~i~~~-----~~~~~~~-~~~~s~~~ 300 (346)
T 4fih_A 234 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMK----MIRDN-----LPPRLKN-LHKVSPSL 300 (346)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHH----HHHHS-----SCCCCSC-GGGSCHHH
T ss_pred cCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH---HHH----HHHcC-----CCCCCCc-cccCCHHH
Confidence 57999999999999999999999999999999999997644322 111 11111 1122211 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.||++|||+.|+++
T Consensus 301 ~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 301 KGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 67889999999999999999864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=146.95 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=68.3
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcc-cccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPP-EIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+|++++|+|+ .+|..+.. +|++|+|++|.+++..+. .|.++++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4555666553 44544432 556666666665543332 2555556666666666555555555555555666666665
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 129 (755)
++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5555444455555555555555555555555555555555555554444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=142.45 Aligned_cols=134 Identities=23% Similarity=0.193 Sum_probs=91.6
Q ss_pred CCCCCCEEEccCccCC-CCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 004413 20 NLKELTVLSFGNNNFS-GTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 98 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 98 (755)
..++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 66777777888888888888887655 56777888888888888887667777777788888
Q ss_pred EEccCCCCCCCC-CccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC---ccccCCCCCCEEeCC
Q 004413 99 LRFQGNSFQGPI-PSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP---SGIGELQNLQTLDLS 174 (755)
Q Consensus 99 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls 174 (755)
|+|++|.+++.. +..+..++ +|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~------------------------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLE------------------------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCS------------------------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EeccCCccCcchhHHHHhcCC------------------------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 888888776421 13444444 45555555555553333 355566666666666
Q ss_pred CCCCC
Q 004413 175 FNNLT 179 (755)
Q Consensus 175 ~N~l~ 179 (755)
+|.+.
T Consensus 156 ~n~~~ 160 (168)
T 2ell_A 156 DREDQ 160 (168)
T ss_dssp ETTSC
T ss_pred CCChh
Confidence 66665
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=142.80 Aligned_cols=130 Identities=20% Similarity=0.125 Sum_probs=113.2
Q ss_pred CeEEecCCcCc-CCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFS-GSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++|+++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 57999999998 88898899999999999999999865 7799999999999999999988898898999999999999
Q ss_pred CCCCCCc-chhhcCCCCCcEEEccCCCCCCCCC---ccccCCCCCCeeecCCCCCCC
Q 004413 80 APFTGKI-PDFIGNWTKLKSLRFQGNSFQGPIP---SSLSKLASLDSLRISDIYNVS 132 (755)
Q Consensus 80 n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~~~~ 132 (755)
|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|....
T Consensus 105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999642 2789999999999999999995544 367778888888777765543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=140.81 Aligned_cols=128 Identities=22% Similarity=0.225 Sum_probs=86.7
Q ss_pred CCCCCEEEccCccCC-CCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 21 LKELTVLSFGNNNFS-GTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 21 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 56666667777777777777777654 556677777777777777776566666667777777
Q ss_pred EccCCCCCCC-CCccccCCCCCCeeecCCCCCCCCCh---hhhcCCCCCCEEEee
Q 004413 100 RFQGNSFQGP-IPSSLSKLASLDSLRISDIYNVSSSL---DFVMSLKNLTDLSLR 150 (755)
Q Consensus 100 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~ 150 (755)
++++|.+++. .+..+..+++|++|++++|.+..... ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777642 23566777777777777776665544 456677777777664
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-16 Score=163.86 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=63.0
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||.+.+..+ +.++||||+||+++||+||+.|++.....+ +. +.+.++.. .+.. .....
T Consensus 175 ~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~---~~----~~i~~~~~------~~p~---~~s~~ 238 (275)
T 3hyh_A 175 PNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV---LF----KNISNGVY------TLPK---FLSPG 238 (275)
T ss_dssp CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHTCC------CCCT---TSCHH
T ss_pred cccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHH---HH----HHHHcCCC------CCCC---CCCHH
Confidence 57999999988776 589999999999999999999997643221 11 12222221 1111 11234
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.||++|||+.|+++
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHHc
Confidence 567889999999999999999986
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-17 Score=188.36 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=62.5
Q ss_pred CchhhhcCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCC----------C-C
Q 004413 62 IPSTYAKLRNMQTLWASDAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISD----------I-Y 129 (755)
Q Consensus 62 ~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~----------n-~ 129 (755)
+|..+..+++|++|+|++|.+++... ..+.++++|++|+++++...+.++..+..+++|++|++++ + .
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 45556677888888888888664333 3356777788877773322222233334566677777763 2 2
Q ss_pred CCCCChh-hhcCCCCCCEEEeeCccccCCCCccccC-CCCCCEEeCC
Q 004413 130 NVSSSLD-FVMSLKNLTDLSLRNALITGSIPSGIGE-LQNLQTLDLS 174 (755)
Q Consensus 130 ~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls 174 (755)
+...... ....+++|++|++..|.+++..+..+.. +++|+.|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 2221111 2334566666666655555444444433 5555555553
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-16 Score=169.80 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+....|+.|+||||+||+++||+||+.||......+ +.. .+..+ ..+.+.. .......+
T Consensus 311 p~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~----~i~~~-----~~~~~~~-~~~~s~~~ 377 (423)
T 4fie_A 311 PYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMK----MIRDN-----LPPRLKN-LHKVSPSL 377 (423)
T ss_dssp TTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHH----HHHHS-----CCCCCSC-TTSSCHHH
T ss_pred cCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH---HHH----HHHcC-----CCCCCcc-cccCCHHH
Confidence 57999999999999999999999999999999999997644322 111 11111 1122211 01112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.||++|||+.|+++
T Consensus 378 ~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 378 KGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 67889999999999999999864
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-17 Score=188.31 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=160.9
Q ss_pred CeEEecCCcCcCC----CchhhcCCCCCCEEEccCccCCC----CCcccccCCccCcEEEccccCCCCCCchhhhcCCCC
Q 004413 1 MLLSVAHNVFSGS----VPRELGNLKELTVLSFGNNNFSG----TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72 (755)
Q Consensus 1 ~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 72 (755)
++|+|++|.+++. ++..+..+++|++|+|++|.+++ .++..+.++++|++|+|++|.+.+ +|..+..+++|
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L 245 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL 245 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence 3566666666544 33344556666666666666652 223334456667777776666543 34445555555
Q ss_pred CEEEccCCC--------------------------CCCCcchhhcCCCCCcEEEccCCCCCCCCC-ccccCCCCCCeeec
Q 004413 73 QTLWASDAP--------------------------FTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLDSLRI 125 (755)
Q Consensus 73 ~~L~L~~n~--------------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l 125 (755)
++|+++.+. ....+|..+..+++|++|+|++|.+++... ..+..+++|+.|++
T Consensus 246 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp CEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred HhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 555554211 123466777788999999999999774433 34688999999999
Q ss_pred CCCCCCCCChh-hhcCCCCCCEEEeeC-----------ccccCC-CCccccCCCCCCEEeCCCCCCCCCCcccccC-CCC
Q 004413 126 SDIYNVSSSLD-FVMSLKNLTDLSLRN-----------ALITGS-IPSGIGELQNLQTLDLSFNNLTGQIPRTLFN-IGS 191 (755)
Q Consensus 126 ~~n~~~~~~~~-~l~~l~~L~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~ 191 (755)
+ +.+...... .+..+++|++|+|++ |.+++. ++..+..+++|+.|+++.|.+++..+..+.. +++
T Consensus 326 ~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp E-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred c-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 8 333333333 446789999999994 555543 2223456899999999999999877777765 999
Q ss_pred CCEEEcc----CCcCCCCCCc-------ccCCCCCEEEeecCc--CCCCCccccc----cccccccccccccc
Q 004413 192 LNYLFLG----NNSLSGTLPT-------QKSENLQNIDLSYNH--LSGPFPSWVT----SNLQMNLVANNFTF 247 (755)
Q Consensus 192 L~~L~Ls----~N~l~~~~p~-------~~~~~L~~L~Ls~N~--l~g~ip~~~~----~~~~l~l~~n~~~~ 247 (755)
|+.|+++ .|.+++.... ...++|+.|+|++|. +++..+..+. ....|+++.|.++.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 9999996 7788753211 124789999998544 7765555443 23358888888764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=141.38 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=66.9
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+++++++|.++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 3443332 34555555555553 34445555555555555555555444445555555555555555
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcccc
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALIT 155 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 155 (755)
.+++..+..|..+++|+.|+|++|.+.......+..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555444445555555555555555555444445555566666666666554
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-16 Score=162.23 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=60.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++||||+||+|+||+||+.|+......+ +. .. +.++.. .+ +......+
T Consensus 190 ~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~---~~---~~-i~~~~~------~~---p~~~s~~~ 253 (304)
T 3ubd_A 190 VEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE---TM---TM-ILKAKL------GM---PQFLSPEA 253 (304)
T ss_dssp GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HH-HHHCCC------CC---CTTSCHHH
T ss_pred cccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH---HH---HH-HHcCCC------CC---CCcCCHHH
Confidence 57999999999999999999999999999999999997654322 11 11 112211 11 11122346
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.||++|||.
T Consensus 254 ~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 254 QSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHHHHTCSSGGGSTTC
T ss_pred HHHHHHHcccCHHHCCCC
Confidence 678899999999999984
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-15 Score=138.00 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=71.3
Q ss_pred ccCcEEEccccCCC-CCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeee
Q 004413 46 AKLEQLYLNSWGAG-GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLR 124 (755)
Q Consensus 46 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 124 (755)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555566666666666655543 4455556666666666666544555555556666666
Q ss_pred cCCCCCCCCC-hhhhcCCCCCCEEEeeCccccCCCC---ccccCCCCCCEEeCC
Q 004413 125 ISDIYNVSSS-LDFVMSLKNLTDLSLRNALITGSIP---SGIGELQNLQTLDLS 174 (755)
Q Consensus 125 l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls 174 (755)
+++|.+.... +..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6655554432 2445555666666666666554443 345555666666554
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-16 Score=164.14 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=72.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++.+..++.|+|||||||++|||+| |+.|++.....+. . ..+..+... ..+..+...+
T Consensus 184 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~----~~~~~~~~~--------~~~~~~~~~~ 248 (327)
T 3poz_A 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI---S----SILEKGERL--------PQPPICTIDV 248 (327)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---H----HHHHTTCCC--------CCCTTBCHHH
T ss_pred cccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH---H----HHHHcCCCC--------CCCccCCHHH
Confidence 6999999999999999999999999999999 9999976544331 1 112222111 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||+|.||++.|+.....
T Consensus 249 ~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 249 YMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999876543
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-15 Score=160.87 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=72.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+. ...+. ..... .. .+......+
T Consensus 203 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~---~~~~~---~~~~~-----~~---~~~~~~~~l 268 (309)
T 3p86_A 203 PEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV---VAAVG---FKCKR-----LE---IPRNLNPQV 268 (309)
T ss_dssp CTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH---HHHHH---HSCCC-----CC---CCTTSCHHH
T ss_pred ccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHH---hcCCC-----CC---CCccCCHHH
Confidence 469999999999999999999999999999999999976543321 11111 11110 11 112223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccCCCC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVI 683 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~~~ 683 (755)
.+++..||+.+|.+|||+.||++.|+.......+|
T Consensus 269 ~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~ 303 (309)
T 3p86_A 269 AAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303 (309)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999999999999877654443
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-16 Score=162.16 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=63.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++||||+||+|+||+||+.|+......+ +.. .+.++... +. ..++ ..+
T Consensus 198 p~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~---~~~----~i~~~~~~--~p---~~~s----~~~ 261 (311)
T 4aw0_A 198 AQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGL---IFA----KIIKLEYD--FP---EKFF----PKA 261 (311)
T ss_dssp GGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHTCCC--CC---TTCC----HHH
T ss_pred cccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHH----HHHcCCCC--CC---cccC----HHH
Confidence 56999999999999999999999999999999999997644322 111 12222210 11 1122 245
Q ss_pred HHHHHHhcccCCCCCCCHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.++...|++.||.+|||+.|+.
T Consensus 262 ~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 262 RDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp HHHHHHHSCSSGGGSTTSGGGT
T ss_pred HHHHHHHccCCHhHCcChHHHc
Confidence 6788999999999999999864
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-15 Score=168.51 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=72.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+..+.++.|+|||||||+||||+| |+.|+......+ +... +..+... ..+..+...+
T Consensus 350 ~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~---~~~~----i~~~~~~--------~~~~~~~~~l 414 (454)
T 1qcf_A 350 KWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE---VIRA----LERGYRM--------PRPENCPEEL 414 (454)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHHH----HHHTCCC--------CCCTTSCHHH
T ss_pred cccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 999997654332 2222 2222111 1122334568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||||.+|+++|+.....
T Consensus 415 ~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 415 YNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 8899999999999999999999999986543
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-16 Score=162.97 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=72.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++|||||||+++||+| |+.|+......+ +.. .+..+... ..+......+
T Consensus 219 ~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~l 283 (325)
T 3kul_A 219 RWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD---VIS----SVEEGYRL--------PAPMGCPHAL 283 (325)
T ss_dssp GGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH---HHH----HHHTTCCC--------CCCTTCCHHH
T ss_pred cccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH---HHH----HHHcCCCC--------CCCCCcCHHH
Confidence 4999999999999999999999999999999 999987654332 111 11221110 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..||+.+|.+||+|.||+++|+......
T Consensus 284 ~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~ 315 (325)
T 3kul_A 284 HQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP 315 (325)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence 88999999999999999999999999876653
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-16 Score=166.83 Aligned_cols=95 Identities=20% Similarity=0.285 Sum_probs=71.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++....++.++|||||||++|||+| |+.|+......+ +.. .+..+... ..+..+...+
T Consensus 215 ~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~---~~~----~i~~~~~~--------~~~~~~~~~l 279 (373)
T 2qol_A 215 RWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD---VIK----AVDEGYRL--------PPPMDCPAAL 279 (373)
T ss_dssp TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH---HHH----HHHTTEEC--------CCCTTCBHHH
T ss_pred CccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH----HHHcCCCC--------CCCccccHHH
Confidence 4999999999999999999999999999998 999987654322 221 12222110 1122334568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||+|.||+++|+.....
T Consensus 280 ~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 280 YQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 8899999999999999999999999987654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-14 Score=133.81 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.+++++|++. .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|+
T Consensus 11 ~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3455555554 2332222 455555555555554333444555555555555555544444444555555555555555
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 129 (755)
+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 554444444455555555555555543333333444444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=135.99 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=81.2
Q ss_pred cEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCC
Q 004413 49 EQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDI 128 (755)
Q Consensus 49 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 128 (755)
+.+++++|+++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666664 3444332 46666666666666 55566666666666666666666555556666666666666666
Q ss_pred CCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCC
Q 004413 129 YNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179 (755)
Q Consensus 129 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 179 (755)
.+....+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666666666666666666666555555666666666666666665
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-15 Score=158.51 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+......+ .... +... ..+.+.. .......+
T Consensus 205 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~---~~~~----~~~~-----~~~~~~~-~~~~~~~l 271 (321)
T 2c30_A 205 PYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ---AMKR----LRDS-----PPPKLKN-SHKVSPVL 271 (321)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHH----HHHS-----SCCCCTT-GGGSCHHH
T ss_pred ccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHH----HhcC-----CCCCcCc-cccCCHHH
Confidence 46999999999999999999999999999999999987544322 1111 1111 1111110 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.||++
T Consensus 272 ~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 272 RDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 77888999999999999999975
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-15 Score=165.89 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=70.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+..+.++.|+|||||||++|||+| |+.|+......+ .. ..+..+... ..+..+...+
T Consensus 280 ~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 344 (377)
T 3cbl_A 280 KWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ---TR----EFVEKGGRL--------PCPELCPDAV 344 (377)
T ss_dssp GGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH---HH----HHHHTTCCC--------CCCTTCCHHH
T ss_pred CcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHHH
Confidence 4999999999999999999999999999999 999987654332 22 222222211 1122234467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
.+++..||+.+|++||||.+|++.|+...
T Consensus 345 ~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 345 FRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 78999999999999999999999998754
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-15 Score=165.90 Aligned_cols=96 Identities=25% Similarity=0.371 Sum_probs=73.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+..+.++.|+|||||||++|||+| |+.|+......+ +. ..+..+... ..+..+...+
T Consensus 346 ~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~---~~----~~i~~~~~~--------~~~~~~~~~l 410 (452)
T 1fmk_A 346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VL----DQVERGYRM--------PCPPECPESL 410 (452)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH----HHHHTTCCC--------CCCTTSCHHH
T ss_pred cccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 999987654332 11 122222111 1122334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..||+.+|++||||.+|++.|+......
T Consensus 411 ~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~ 442 (452)
T 1fmk_A 411 HDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 442 (452)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence 88999999999999999999999999876543
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-15 Score=167.01 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=73.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
+|+|||++.+..++.++|||||||+||||+||+.|+..............+...........+. ..+ ..++.
T Consensus 178 ~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~~~----p~~l~ 249 (483)
T 3sv0_A 178 RYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALC----RGY----PTEFA 249 (483)
T ss_dssp TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHH----TTS----CHHHH
T ss_pred cccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHh----cCC----cHHHH
Confidence 6999999999999999999999999999999999998654433222222222211111111110 111 34678
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 650 GVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+++..||+.+|++||+|.+|+++|+....
T Consensus 250 ~li~~cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 250 SYFHYCRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp HHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999987644
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-15 Score=152.58 Aligned_cols=99 Identities=18% Similarity=0.337 Sum_probs=72.1
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||.+. ...++.++||||||++++||+||+.|+......+ .+. .....+.. .+.+......+.
T Consensus 186 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~--~~~----~~~~~~~~----~~~~~~~~~~~~ 255 (289)
T 3og7_A 186 ILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD--QII----EMVGRGSL----SPDLSKVRSNCP 255 (289)
T ss_dssp CTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH--HHH----HHHHHTSC----CCCTTSSCTTSC
T ss_pred ccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH--HHH----HHhccccc----CcchhhccccCC
Confidence 4699999986 6778999999999999999999999997654322 122 22222221 222222223344
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
..+.+++..|++.+|.+||++.|++++|+...
T Consensus 256 ~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 256 KRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 57888999999999999999999999998764
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-15 Score=167.52 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=71.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+..+.++.|+|||||||+||||+| |+.|+......+ +.+ .+..+... ..+..+...+
T Consensus 384 ~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~---~~~----~~~~~~~~--------~~~~~~~~~l 448 (495)
T 1opk_A 384 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYE----LLEKDYRM--------ERPEGCPEKV 448 (495)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHH----HHHTTCCC--------CCCTTCCHHH
T ss_pred ceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH---HHH----HHHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 999987654332 111 22222111 1122334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|++||||.+|+++|+....
T Consensus 449 ~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 449 YELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred HHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 889999999999999999999999997654
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-15 Score=158.35 Aligned_cols=95 Identities=22% Similarity=0.310 Sum_probs=70.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+..+.++.++|||||||+++||+| |+.|+......+. . ..+..+... ..+ ..+...+
T Consensus 182 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~----~~~~~~~~~--~~~------~~~~~~~ 246 (325)
T 3kex_A 182 KWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV---P----DLLEKGERL--AQP------QICTIDV 246 (325)
T ss_dssp TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH---H----HHHHTTCBC--CCC------TTBCTTT
T ss_pred cccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH---H----HHHHcCCCC--CCC------CcCcHHH
Confidence 6999999999999999999999999999999 9999876543321 1 112222111 111 1122246
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||+|.||++.|+.....
T Consensus 247 ~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 247 YMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp THHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 6789999999999999999999999886554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=132.22 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=86.6
Q ss_pred CCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
.+.+++++|.++ .+|..+. ++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 4554333 5777777777777655555666777777777777777655555566677777777777
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|.+++..+..+. .+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+..+
T Consensus 86 N~l~~~~~~~~~------------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFD------------------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTT------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhh------------------------CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 766644443344 44555566666666665555556777888888888888876544
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-15 Score=155.63 Aligned_cols=102 Identities=6% Similarity=0.019 Sum_probs=72.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+......+.......+......-.. +.+ .+ ... .+
T Consensus 181 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~-~~~----~~---~~p-~~ 251 (330)
T 2izr_A 181 ARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPI-EVL----CE---NFP-EM 251 (330)
T ss_dssp TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCH-HHH----TT---TCH-HH
T ss_pred ccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCH-HHH----hc---cCh-HH
Confidence 4699999999999999999999999999999999999765433222222222111110000 000 00 112 78
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..|++.+|.+||++.+|++.|+.....
T Consensus 252 ~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~ 282 (330)
T 2izr_A 252 ATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR 282 (330)
T ss_dssp HHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999876554
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-15 Score=155.07 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=73.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+..............+..........+. .......+
T Consensus 182 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l 253 (298)
T 1csn_A 182 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLREL--------CAGFPEEF 253 (298)
T ss_dssp TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHH--------TTTSCHHH
T ss_pred cccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHH--------HhhCcHHH
Confidence 4599999999999999999999999999999999999764432222222222211111111100 11123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||++.+|++.|+.....
T Consensus 254 ~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~ 284 (298)
T 1csn_A 254 YKYMHYARNLAFDATPDYDYLQGLFSKVLER 284 (298)
T ss_dssp HHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999986654
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-15 Score=165.14 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=72.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+....++.|+|||||||++|||+| |+.|+......+. . ..+..+... ..+..+...
T Consensus 350 ~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~---~----~~i~~~~~~--------~~p~~~~~~ 414 (450)
T 1k9a_A 350 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---V----PRVEKGYKM--------DAPDGCPPA 414 (450)
T ss_dssp TTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH---H----HHHHTTCCC--------CCCTTCCHH
T ss_pred cceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH---H----HHHHcCCCC--------CCCCcCCHH
Confidence 46999999999999999999999999999999 9999876543321 1 122222111 112234457
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..||+.+|.+||||.++++.|+...
T Consensus 415 l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 415 VYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 788999999999999999999999998754
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-15 Score=158.46 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=72.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+.+..++.++|||||||+++||+| |+.|++.....+. .. .+..+... ..+......+
T Consensus 184 ~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~---~~----~~~~~~~~--------~~~~~~~~~l 248 (327)
T 3lzb_A 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI---SS----ILEKGERL--------PQPPICTIDV 248 (327)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---HH----HHHTTCCC--------CCCTTBCHHH
T ss_pred cccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---HH----HHHcCCCC--------CCCccCCHHH
Confidence 5999999999999999999999999999999 9999976544331 11 12221111 1112223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||++.|+++.|+.....
T Consensus 249 ~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 249 YMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 7899999999999999999999999987654
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=153.14 Aligned_cols=99 Identities=24% Similarity=0.388 Sum_probs=72.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|++....... -..|. . ..+..... .... ...+
T Consensus 167 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~~~~~--~-~~~~~~~~----~~~~----~~~l 233 (307)
T 2eva_A 167 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF--RIMWA--V-HNGTRPPL----IKNL----PKPI 233 (307)
T ss_dssp TTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH--HHHHH--H-HTTCCCCC----BTTC----CHHH
T ss_pred CceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH--HHHHH--H-hcCCCCCc----cccc----CHHH
Confidence 579999999999999999999999999999999999875432211 11111 1 11111111 1122 2357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..|++.+|.+||||.||++.|+......
T Consensus 234 ~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 234 ESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999876543
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-15 Score=160.04 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=72.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++|||||||+++||+| |+.|+......+ +.+. +..+... ..+......+
T Consensus 251 ~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~---~~~~----i~~~~~~--------~~~~~~~~~l 315 (367)
T 3l9p_A 251 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VLEF----VTSGGRM--------DPPKNCPGPV 315 (367)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHHH----HHTTCCC--------CCCTTCCHHH
T ss_pred cEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HHcCCCC--------CCCccCCHHH
Confidence 5999999999999999999999999999998 999987654322 2221 2222111 1112223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..||+.+|.+||++.||++.|+......
T Consensus 316 ~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 316 YRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 78999999999999999999999998866544
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=167.49 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=73.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++..+.++.|+|||||||+||||+| |+.|+......+ +. ..+..+... ..+..+...+
T Consensus 504 ~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~---~~----~~i~~~~~~--------~~p~~~~~~l 568 (613)
T 2ozo_A 504 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VM----AFIEQGKRM--------ECPPECPPEL 568 (613)
T ss_dssp TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH---HH----HHHHTTCCC--------CCCTTCCHHH
T ss_pred ceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCcCCHHH
Confidence 5999999999999999999999999999998 999998655433 22 222233211 1123344578
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|++||+|.+|+++|+....
T Consensus 569 ~~li~~cl~~dP~~RPs~~~l~~~L~~~~~ 598 (613)
T 2ozo_A 569 YALMSDCWIYKWEDRPDFLTVEQRMRACYY 598 (613)
T ss_dssp HHHHHHTTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 889999999999999999999999987543
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-15 Score=154.64 Aligned_cols=102 Identities=9% Similarity=0.009 Sum_probs=71.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHH-HHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL-EWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+............ ......... .. +.+. ..+ ...
T Consensus 179 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~---~~~----~~~ 249 (296)
T 4hgt_A 179 ARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-PI-EVLC---KGY----PSE 249 (296)
T ss_dssp GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS-CH-HHHT---TTS----CHH
T ss_pred ccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc-hh-hhhh---ccC----CHH
Confidence 4699999999999999999999999999999999998754322111111 111111110 00 0000 111 246
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++..|++.+|++||++.+|++.|+.....
T Consensus 250 l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~ 281 (296)
T 4hgt_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999986654
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-15 Score=160.60 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=72.3
Q ss_pred ccccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhHH----------HHHHHHHHHhhcCcccccc
Q 004413 569 HGYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI----------YLLEWAWNLHENNQSLGLV 633 (755)
Q Consensus 569 ~gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~ 633 (755)
..|+|||.+.+ ..++.|+|||||||++|||+||+.|+......... ...++...... + ..
T Consensus 197 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~ 271 (322)
T 3soc_A 197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVH-K----KK 271 (322)
T ss_dssp GGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTT-S----CC
T ss_pred ccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhc-c----cC
Confidence 46999999886 46678999999999999999999998653221100 11111111111 1 11
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 634 DPTLTE--FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 634 d~~l~~--~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+.+.. ....+...+.+++..||+.+|++|||+.||++.|+....
T Consensus 272 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~ 318 (322)
T 3soc_A 272 RPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR 318 (322)
T ss_dssp CCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 222221 123566779999999999999999999999999987654
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-15 Score=157.17 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=58.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+|||||||+|+||++ |+... .+.... . ....+... ...........
T Consensus 194 ~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~--~~~~~~---~-~~~~~~~~--------p~~~~~~~~~~ 256 (299)
T 4g31_A 194 KLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ--MERVRT---L-TDVRNLKF--------PPLFTQKYPCE 256 (299)
T ss_dssp CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH--HHHHHH---H-HHHHTTCC--------CHHHHHHCHHH
T ss_pred ccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc--cHHHHH---H-HHHhcCCC--------CCCCcccCHHH
Confidence 45999999999999999999999999999997 65421 111111 1 11111111 11111222345
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..+|++.+|.+|||+.|+++
T Consensus 257 ~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 257 YVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 67889999999999999999875
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=165.53 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=72.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+..+.++.|+|||||||+||||+| |+.|+......+ +. ..+..+... ..+..+...+
T Consensus 429 ~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~---~~----~~i~~~~~~--------~~~~~~~~~l 493 (535)
T 2h8h_A 429 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VL----DQVERGYRM--------PCPPECPESL 493 (535)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH---HH----HHHHTTCCC--------CCCTTCCHHH
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 999987654332 11 122222111 1122334567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||||.+|+++|+.....
T Consensus 494 ~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 494 HDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence 8899999999999999999999999986554
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-15 Score=158.66 Aligned_cols=95 Identities=24% Similarity=0.334 Sum_probs=72.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++.+..++.++|||||||++|||+| |+.|+......+ +. ..+..+... ..+..+...+
T Consensus 270 ~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 334 (370)
T 2psq_A 270 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE---LF----KLLKEGHRM--------DKPANCTNEL 334 (370)
T ss_dssp GGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HH----HHHHTTCCC--------CCCTTSCHHH
T ss_pred ceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH---HH----HHHhcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999999 999987654332 11 122222111 1122334467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||++.|+++.|+.....
T Consensus 335 ~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 335 YMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999986543
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-15 Score=154.86 Aligned_cols=103 Identities=10% Similarity=-0.015 Sum_probs=72.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH-HHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA-WNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+..............+ ...... .. +.+. .. ....
T Consensus 179 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~---~~----~~~~ 249 (296)
T 3uzp_A 179 ARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-PI-EVLC---KG----YPSE 249 (296)
T ss_dssp TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS-CH-HHHT---TT----SCHH
T ss_pred cccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC-ch-HHHH---hh----CCHH
Confidence 4699999999999999999999999999999999998754322111111111 111110 00 0000 11 1245
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+.+++..|++.+|++||++.+|++.|+......
T Consensus 250 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 282 (296)
T 3uzp_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999866544
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-15 Score=155.88 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=71.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++|||||||+++||+| |+.|+......+ +. ..+.++... ..+......+
T Consensus 215 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 279 (333)
T 1mqb_A 215 RWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE---VM----KAINDGFRL--------PTPMDCPSAI 279 (333)
T ss_dssp GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH----HHHHTTCCC--------CCCTTCBHHH
T ss_pred cccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH---HH----HHHHCCCcC--------CCcccCCHHH
Confidence 4999999999999999999999999999999 999987554322 11 122222111 0112233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||+|.+|++.|+.....
T Consensus 280 ~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 280 YQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999886654
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-14 Score=149.37 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred ccccchhhhhc---------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCC
Q 004413 569 HGYLAPEYAMR---------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTE 639 (755)
Q Consensus 569 ~gy~aPE~~~~---------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~ 639 (755)
.+|+|||.+.. ..++.++|||||||+++||+||+.|+........ .+ ....+........ .
T Consensus 198 ~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~~-~~~~~~~~~~~~~---~ 267 (319)
T 2y4i_B 198 LCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI------IW-QMGTGMKPNLSQI---G 267 (319)
T ss_dssp GGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHH------HH-HHHTTCCCCCCCS---S
T ss_pred ccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HH-HhccCCCCCCCcC---C
Confidence 35999999874 4589999999999999999999999876543221 11 1222211111111 1
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccccCCC
Q 004413 640 FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKV 682 (755)
Q Consensus 640 ~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~~ 682 (755)
+ ...+.+++..||+.+|.+|||+.+|+++|+........
T Consensus 268 ~----~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~ 306 (319)
T 2y4i_B 268 M----GKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRR 306 (319)
T ss_dssp C----CTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC------
T ss_pred C----CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 1 22477899999999999999999999999987665433
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-15 Score=158.14 Aligned_cols=106 Identities=8% Similarity=0.035 Sum_probs=74.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
+|||||++.+..++.++|||||||+++||+||+.|+...... .....+....... .+.+++++.+.. ......+.
T Consensus 226 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 300 (364)
T 3op5_A 226 EFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD--PKYVRDSKIRYRE-NIASLMDKCFPA--ANAPGEIA 300 (364)
T ss_dssp TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC--HHHHHHHHHHHHH-CHHHHHHHHSCT--TCCCHHHH
T ss_pred CccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC--HHHHHHHHHHhhh-hHHHHHHHhccc--ccCHHHHH
Confidence 699999999999999999999999999999999999743221 1222222222211 122333333210 11234677
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 650 GVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+++..||+.+|.+||+|.+|++.|+......
T Consensus 301 ~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~ 331 (364)
T 3op5_A 301 KYMETVKLLDYTEKPLYENLRDILLQGLKAI 331 (364)
T ss_dssp HHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence 8899999999999999999999999876543
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-14 Score=152.55 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=71.2
Q ss_pred ccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh---------HHHHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME---------KIYLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 571 y~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
|+|||.+....++.++|||||||+++||+||+.|+....... ......++...+..+... ..+
T Consensus 183 y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 254 (295)
T 3ugc_A 183 WYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRL--------PRP 254 (295)
T ss_dssp GCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCC--------CCC
T ss_pred eeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcC--------CCC
Confidence 999999999999999999999999999999999876421110 011112222222222111 112
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
..+...+.+++..||+.+|++|||+.||+++|+....
T Consensus 255 ~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 255 DGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 2334568889999999999999999999999987654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-16 Score=151.88 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=83.8
Q ss_pred hcCCCCCCEEEccCccCCCCCcc------cccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhc
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPP------EIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIG 91 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 91 (755)
+.....++.++++.+.+.+.+|. .|..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556667777777777666655 67777777777777777755 45 6677777777777777776 5666666
Q ss_pred CCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCCh-hhhcCCCCCCEEEeeCccccCC
Q 004413 92 NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL-DFVMSLKNLTDLSLRNALITGS 157 (755)
Q Consensus 92 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 157 (755)
.+++|++|++++|++++ +| .+..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 66777777777777764 33 35555555555555555443222 3444555555555555555443
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-15 Score=154.62 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=70.7
Q ss_pred ccccchhhhhcC------CCCccceeeeehheeehhhhC----------CcCCCCCchhhHHHHHHHHHHHhhcCccccc
Q 004413 569 HGYLAPEYAMRG------HLTEKADVFSFGVAALEIISG----------RANSDNSLDMEKIYLLEWAWNLHENNQSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~------~~t~ksDVysfGvvllElltg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 632 (755)
.+|+|||.+... .++.|+|||||||++|||+|| +.|+........ .... ....... ..
T Consensus 181 ~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~-~~~~-~~~~~~~----~~ 254 (301)
T 3q4u_A 181 KRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDP-SFED-MRKVVCV----DQ 254 (301)
T ss_dssp GGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC-CHHH-HHHHHTT----SC
T ss_pred cceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCc-chhh-hhHHHhc----cC
Confidence 579999999876 566899999999999999999 777754322111 0111 1111111 11
Q ss_pred cCCCCC--CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 633 VDPTLT--EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 633 ~d~~l~--~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
..+.+. ..+......+.+++..||+.+|.+||||.||+++|+..
T Consensus 255 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 255 QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 122221 12345678899999999999999999999999999853
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-14 Score=165.88 Aligned_cols=92 Identities=23% Similarity=0.247 Sum_probs=71.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++....++.|+|||||||+++||+| |+.|+......+ +...+..+... ..+..+...+
T Consensus 537 ~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-------~~~~i~~~~~~--------~~p~~~~~~l 601 (635)
T 4fl3_A 537 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-------VTAMLEKGERM--------GCPAGCPREM 601 (635)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-------HHHHHHTTCCC--------CCCTTCCHHH
T ss_pred eeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-------HHHHHHcCCCC--------CCCCCCCHHH
Confidence 4999999999999999999999999999999 999997655432 22222332211 1122334578
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.+++..||+.+|++||+|.+|+++|+..
T Consensus 602 ~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 602 YDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 8899999999999999999999999864
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-15 Score=152.46 Aligned_cols=94 Identities=23% Similarity=0.336 Sum_probs=70.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++||||||++++||+| |+.|+......+ +... +..+... ..+......+
T Consensus 182 ~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~---~~~~----i~~~~~~--------~~~~~~~~~l 246 (281)
T 1mp8_A 182 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIGR----IENGERL--------PMPPNCPPTL 246 (281)
T ss_dssp GGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHH----HHTTCCC--------CCCTTCCHHH
T ss_pred cccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH---HHHH----HHcCCCC--------CCCCCCCHHH
Confidence 5999999999999999999999999999997 999987654432 1111 1122111 1112233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++.||++.|+....
T Consensus 247 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 247 YSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987543
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-15 Score=156.29 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=60.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+ .++.++|||||||++|||+||+.+...... +..+..+... +.+ +......+
T Consensus 220 ~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~----------~~~~~~~~~~----~~~---~~~~~~~l 281 (311)
T 3p1a_A 220 PRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG----------WQQLRQGYLP----PEF---TAGLSSEL 281 (311)
T ss_dssp GGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH----------HHHHTTTCCC----HHH---HTTSCHHH
T ss_pred ccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH----------HHHHhccCCC----ccc---ccCCCHHH
Confidence 47999998775 899999999999999999999877543110 1112222111 111 11123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.|+++
T Consensus 282 ~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 282 RSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCChhhCcCHHHHHh
Confidence 78999999999999999999975
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-14 Score=148.63 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=69.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++||||||++++||+||+.|+........ ...... +... . ..+......+
T Consensus 178 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~-~~~~----~---~~~~~~~~~~ 243 (271)
T 3dtc_A 178 YAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV------AYGVAM-NKLA----L---PIPSTCPEPF 243 (271)
T ss_dssp GGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH------HHHHHT-SCCC----C---CCCTTCCHHH
T ss_pred cceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHhhhc-CCCC----C---CCCcccCHHH
Confidence 579999999999999999999999999999999999976543221 111111 1111 1 1122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..|++.+|.+|||+.||++.|+.
T Consensus 244 ~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 244 AKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred HHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 789999999999999999999999975
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.9e-15 Score=150.47 Aligned_cols=94 Identities=29% Similarity=0.398 Sum_probs=69.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||+|++++||+| |+.|+......+ +.. .+..+. ....+ ......+
T Consensus 172 ~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~---~~~----~~~~~~--~~~~~------~~~~~~~ 236 (269)
T 4hcu_A 172 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE---VVE----DISTGF--RLYKP------RLASTHV 236 (269)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHH----HHHTTC--CCCCC------TTSCHHH
T ss_pred ccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH---HHH----HHhcCc--cCCCC------CcCCHHH
Confidence 5999999999999999999999999999999 999987654322 111 111111 01111 1123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++.|+++.|+...+
T Consensus 237 ~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 237 YQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 788999999999999999999999987643
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-14 Score=157.60 Aligned_cols=95 Identities=22% Similarity=0.344 Sum_probs=69.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++|||||||++|||+| |+.|+......+ +..+ +..+.. ... +..+...+
T Consensus 261 ~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~---~~~~----~~~~~~--~~~------p~~~~~~l 325 (373)
T 3c1x_A 261 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD---ITVY----LLQGRR--LLQ------PEYCPDPL 325 (373)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC---HHHH----HHTTCC--CCC------CTTCCHHH
T ss_pred cccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH---HHHH----HHcCCC--CCC------CCCCCHHH
Confidence 5999999999999999999999999999999 566665443322 1111 112211 111 12223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||++.||++.|+.....
T Consensus 326 ~~li~~cl~~dp~~RPs~~ell~~L~~i~~~ 356 (373)
T 3c1x_A 326 YEVMLKCWHPKAEMRPSFSELVSRISAIFST 356 (373)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999986654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.4e-14 Score=133.47 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=77.1
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCc-cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLA-KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKL 96 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 96 (755)
+.++.+|+.|+|++|.++ .+|. +..+. +|++|+|++|.+++. ..|..+++|++|++++|.+++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455666777777777666 3343 33333 666666666666543 355666666666666666664333334566666
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc----ccCCCCCCEEe
Q 004413 97 KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG----IGELQNLQTLD 172 (755)
Q Consensus 97 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~ 172 (755)
++|++++|.++ .+|. ...+..+++|+.|++++|.++ .+|.. +..+++|+.||
T Consensus 91 ~~L~L~~N~i~-~~~~----------------------~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 91 TELILTNNSLV-ELGD----------------------LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSCCCC-CGGG----------------------GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcCC-cchh----------------------hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 66666666664 3333 013444555566666666665 33432 66677777777
Q ss_pred CCCCCCC
Q 004413 173 LSFNNLT 179 (755)
Q Consensus 173 Ls~N~l~ 179 (755)
++.|.+.
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 7777654
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-14 Score=149.07 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=70.0
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+......+. ... +..+.... . +......+
T Consensus 179 ~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~---~~~----~~~~~~~~-----~---~~~~~~~l 243 (281)
T 3cc6_A 179 KWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV---IGV----LEKGDRLP-----K---PDLCPPVL 243 (281)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH---HHH----HHHTCCCC-----C---CTTCCHHH
T ss_pred ceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH---HHH----HhcCCCCC-----C---CCCCCHHH
Confidence 5999999999999999999999999999999 9999875443321 111 11111110 1 11123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++.||++.|+....
T Consensus 244 ~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 244 YTLMTRCWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=146.52 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=76.7
Q ss_pred CCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCC-EEeCCCCCCCCCCcccccCCCCCCEE
Q 004413 117 LASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQ-TLDLSFNNLTGQIPRTLFNIGSLNYL 195 (755)
Q Consensus 117 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 195 (755)
+++|+.|+|.+|.+......+|.++.+|+.|+|.+| ++...+..|.++.+|+ .|++.. .++...+.+|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678888888888888777778888888888888887 6656667788888888 888887 6665556788888888888
Q ss_pred EccCCcCCCCCCccc--CCCCCEEE
Q 004413 196 FLGNNSLSGTLPTQK--SENLQNID 218 (755)
Q Consensus 196 ~Ls~N~l~~~~p~~~--~~~L~~L~ 218 (755)
++++|.++...+..+ .++|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 888888874444333 25777765
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-14 Score=149.70 Aligned_cols=94 Identities=21% Similarity=0.314 Sum_probs=69.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++||||||++++||+| |+.|++.....+. ... ...+. ....+. .....+
T Consensus 170 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~------~~~-~~~~~--~~~~~~------~~~~~l 234 (268)
T 3sxs_A 170 KWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV------VLK-VSQGH--RLYRPH------LASDTI 234 (268)
T ss_dssp GGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH------HHH-HHTTC--CCCCCT------TSCHHH
T ss_pred ccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH------HHH-HHcCC--CCCCCC------cChHHH
Confidence 4999999999999999999999999999999 9999876543321 111 11111 111111 112357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+|||+.||++.|+...+
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 235 YQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 789999999999999999999999987654
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-14 Score=149.68 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+........ .......+. +.+ ..+......+
T Consensus 180 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~------~~~~~~~~~------~~~-~~~~~~~~~~ 246 (297)
T 3fxz_A 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA------LYLIATNGT------PEL-QNPEKLSAIF 246 (297)
T ss_dssp GGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHHCS------CCC-SCGGGSCHHH
T ss_pred cCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhCCC------CCC-CCccccCHHH
Confidence 469999999999999999999999999999999999976543221 111111111 011 0112223457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.|+++
T Consensus 247 ~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 247 RDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhHCcCHHHHhh
Confidence 78899999999999999999975
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-15 Score=155.13 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=70.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++||||||++++||+| |+.|+......+ +. ..+..+... ..+......+
T Consensus 205 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 269 (322)
T 1p4o_A 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ---VL----RFVMEGGLL--------DKPDNCPDML 269 (322)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH---HH----HHHHTTCCC--------CCCTTCCHHH
T ss_pred CccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH---HH----HHHHcCCcC--------CCCCCCCHHH
Confidence 4999999999999999999999999999999 888887543322 11 112222211 1112233457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+||++.|+++.|+....
T Consensus 270 ~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 270 FELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 789999999999999999999999987654
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-14 Score=155.11 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=71.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++|||||||++|||+| |+.|+......+ +. ..+.++.... .+......+
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~----~~~~~~~~~~--------~~~~~~~~l 305 (343)
T 1luf_A 241 RWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE---VI----YYVRDGNILA--------CPENCPLEL 305 (343)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HH----HHHHTTCCCC--------CCTTCCHHH
T ss_pred eecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHH---HH----HHHhCCCcCC--------CCCCCCHHH
Confidence 5999999999999999999999999999999 999987654322 11 2222232211 122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|++||++.+|++.|+.....
T Consensus 306 ~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~ 336 (343)
T 1luf_A 306 YNLMRLCWSKLPADRPSFCSIHRILQRMCER 336 (343)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred HHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999986553
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=155.93 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=72.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||++.+..++.|+|||||||+++||+| |+.|+......+ +. ..+..+.... .+......+
T Consensus 258 ~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~---~~----~~~~~~~~~~--------~~~~~~~~l 322 (382)
T 3tt0_A 258 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE---LF----KLLKEGHRMD--------KPSNCTNEL 322 (382)
T ss_dssp GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HH----HHHHTTCCCC--------CCSSCCHHH
T ss_pred ceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCCC--------CCccCCHHH
Confidence 5999999999999999999999999999999 999987654322 22 2222222111 111223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..||+.+|++||+|.||++.|+......
T Consensus 323 ~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 323 YMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999876654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=145.65 Aligned_cols=84 Identities=20% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCC-EEEccCCcCCCCCCccc--CCCCCEE
Q 004413 141 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLN-YLFLGNNSLSGTLPTQK--SENLQNI 217 (755)
Q Consensus 141 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~--~~~L~~L 217 (755)
+++|+.|+|++|.++......|..+++|+.|+|..| ++.....+|.++.+|+ .+++.+ .++...+..+ +++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999777778999999999999998 7756667899999999 999998 6764433333 3799999
Q ss_pred EeecCcCCC
Q 004413 218 DLSYNHLSG 226 (755)
Q Consensus 218 ~Ls~N~l~g 226 (755)
++++|.++.
T Consensus 303 ~l~~n~i~~ 311 (329)
T 3sb4_A 303 LATGDKITT 311 (329)
T ss_dssp EECSSCCCE
T ss_pred EeCCCccCc
Confidence 999999983
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-15 Score=155.02 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=68.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
+|+|||.+.+..++.|+|||||||+++||+||+.|+......... ......... +.. .+......+.
T Consensus 187 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~-~~~~~~~~~---------~~~---~~~~~~~~l~ 253 (310)
T 3s95_A 187 YWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD-FGLNVRGFL---------DRY---CPPNCPPSFF 253 (310)
T ss_dssp GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT-SSBCHHHHH---------HHT---CCTTCCTTHH
T ss_pred ceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH-Hhhhhhccc---------ccc---CCCCCCHHHH
Confidence 399999999999999999999999999999999987643221100 000000000 000 0112223577
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 650 GVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+++..|++.+|++|||+.|+++.|+.....
T Consensus 254 ~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 254 PITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 899999999999999999999999876543
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-14 Score=154.41 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=62.0
Q ss_pred ccccchhhhhc-----------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 569 HGYLAPEYAMR-----------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~-----------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
.+|+|||++.. ..++.++|||||||+++||+||+.|+....... . ...... ++..
T Consensus 173 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~----~~~~~~---------~~~~ 238 (343)
T 3dbq_A 173 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-S----KLHAII---------DPNH 238 (343)
T ss_dssp CSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-H----HHHHHH---------CTTS
T ss_pred cCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHH-H----HHHHHh---------cCCc
Confidence 57999999875 789999999999999999999999987543221 1 111111 1111
Q ss_pred -CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 -TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 -~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++......+.+++..|++.+|.+||||.|+++
T Consensus 239 ~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~ 273 (343)
T 3dbq_A 239 EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 273 (343)
T ss_dssp CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence 1111122245678899999999999999999985
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-14 Score=148.54 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=71.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++||||||++++||+| |+.|+......+ +. ..+..+... ..+......+
T Consensus 185 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~----~~~~~~~~~--------~~~~~~~~~l 249 (291)
T 1xbb_A 185 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VT----AMLEKGERM--------GCPAGCPREM 249 (291)
T ss_dssp GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH----HHHHTTCCC--------CCCTTCCHHH
T ss_pred eeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCCCCCHHH
Confidence 4999999999999999999999999999999 999987654322 11 222222211 1122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|.+||++.+|++.|+....
T Consensus 250 ~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 279 (291)
T 1xbb_A 250 YDLMNLCWTYDVENRPGFAAVELRLRNYYY 279 (291)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 889999999999999999999999987543
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-14 Score=148.53 Aligned_cols=95 Identities=27% Similarity=0.395 Sum_probs=68.4
Q ss_pred ccccchhhh--hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYA--MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~--~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||.+ ....++.++|||||||+++||+||+.|++....... ... ......+ ..+.+ +.....
T Consensus 190 ~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-~~~---~~~~~~~-----~~~~~---~~~~~~ 257 (287)
T 4f0f_A 190 FQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKI-KFI---NMIREEG-----LRPTI---PEDCPP 257 (287)
T ss_dssp CTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHH-HHH---HHHHHSC-----CCCCC---CTTSCH
T ss_pred ccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHH-HHH---HHHhccC-----CCCCC---CcccCH
Confidence 469999998 456789999999999999999999999976543321 111 1111111 11111 122234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+.+++..|++.+|.+|||+.||++.|+.
T Consensus 258 ~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 258 RLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 67889999999999999999999999975
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-14 Score=149.75 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=69.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+......+. . ..+..+. .... +......+
T Consensus 186 ~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~---~----~~~~~~~-----~~~~---~~~~~~~l 250 (283)
T 3gen_A 186 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET---A----EHIAQGL-----RLYR---PHLASEKV 250 (283)
T ss_dssp GGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH---H----HHHHTTC-----CCCC---CTTCCHHH
T ss_pred ccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHH---H----HHHhccc-----CCCC---CCcCCHHH
Confidence 4999999999999999999999999999999 9999876543221 1 1111111 1111 11112457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+|||+.|+++.|+....
T Consensus 251 ~~li~~~l~~~p~~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 251 YTIMYSCWHEKADERPTFKILLSNILDVMD 280 (283)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence 789999999999999999999999987543
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-14 Score=151.37 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=35.4
Q ss_pred cccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 570 GYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 570 gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
+|||||.+.+. .++.++||||+||+++||+||+.|+....
T Consensus 211 ~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~ 251 (361)
T 4f9c_A 211 GFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS 251 (361)
T ss_dssp GGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred cccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC
Confidence 49999998775 58999999999999999999999986543
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-14 Score=152.34 Aligned_cols=96 Identities=23% Similarity=0.260 Sum_probs=72.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++|||||||+++||+| |+.|+......+. . ..+..+... ..+......+
T Consensus 204 ~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~---~----~~~~~~~~~--------~~~~~~~~~l 268 (323)
T 3qup_A 204 KWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI---Y----NYLIGGNRL--------KQPPECMEEV 268 (323)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---H----HHHHTTCCC--------CCCTTCCHHH
T ss_pred cccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH---H----HHHhcCCCC--------CCCCccCHHH
Confidence 5999999999999999999999999999999 8999876544321 1 111111111 1112233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..|++.+|.+|||+.++++.|+.....+
T Consensus 269 ~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 269 YDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999876653
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-14 Score=156.33 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=61.7
Q ss_pred ccccchhhhhc-----------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 569 HGYLAPEYAMR-----------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~-----------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
.+|||||++.. ..++.|+|||||||+++||+||+.|+....... ....... ++..
T Consensus 220 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-----~~~~~~~---------~~~~ 285 (390)
T 2zmd_A 220 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-----SKLHAII---------DPNH 285 (390)
T ss_dssp GGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-----HHHHHHH---------CTTS
T ss_pred CCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH-----HHHHHHh---------Cccc
Confidence 46999999875 479999999999999999999999997543211 1111111 1111
Q ss_pred -CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 -TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 -~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++......+.+++..|++.+|.+||++.||++
T Consensus 286 ~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 320 (390)
T 2zmd_A 286 EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 320 (390)
T ss_dssp CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cCCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence 0111111345678889999999999999999985
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-15 Score=147.12 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=121.6
Q ss_pred eEEecCCcCcCCCch------hhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEE
Q 004413 2 LLSVAHNVFSGSVPR------ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTL 75 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 75 (755)
.++++.+.++|.+|. .+..+++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..+..+++|++|
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence 467888888888876 89999999999999999985 67 8999999999999999997 678888888999999
Q ss_pred EccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCC-ccccCCCCCCeeecCCCCCCCCChh----------hhcCCCCC
Q 004413 76 WASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP-SSLSKLASLDSLRISDIYNVSSSLD----------FVMSLKNL 144 (755)
Q Consensus 76 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~----------~l~~l~~L 144 (755)
++++|++++ +| .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+....+. .+..+++|
T Consensus 99 ~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred ECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence 999999995 55 68899999999999999984322 4788999999999999976544222 35666777
Q ss_pred CEEEeeCcccc
Q 004413 145 TDLSLRNALIT 155 (755)
Q Consensus 145 ~~L~L~~n~l~ 155 (755)
+.|+ +|.++
T Consensus 177 ~~Ld--~~~i~ 185 (198)
T 1ds9_A 177 KKLD--GMPVD 185 (198)
T ss_dssp SEEC--CGGGT
T ss_pred EEEC--CcccC
Confidence 7665 45444
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-15 Score=152.19 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=70.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+....... +.+. +..+. .. ..+......+
T Consensus 177 ~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~---~~~~----~~~~~-----~~---~~~~~~~~~l 241 (288)
T 3kfa_A 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYEL----LEKDY-----RM---ERPEGCPEKV 241 (288)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHH----HHTTC-----CC---CCCTTCCHHH
T ss_pred CcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH----HhccC-----CC---CCCCCCCHHH
Confidence 5999999999999999999999999999999 999987654332 1111 11111 01 1112223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+||++.||+++|+....
T Consensus 242 ~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 242 YELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987544
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-15 Score=152.59 Aligned_cols=95 Identities=25% Similarity=0.343 Sum_probs=70.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+..+.++.++||||||++++||+| |+.|+......+ +.. .+..+.. +.. +......+
T Consensus 175 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~~----~~~~~~~-----~~~---~~~~~~~l 239 (279)
T 1qpc_A 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE---VIQ----NLERGYR-----MVR---PDNCPEEL 239 (279)
T ss_dssp TTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HHH----HHHTTCC-----CCC---CTTCCHHH
T ss_pred CccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH---HHH----HHhcccC-----CCC---cccccHHH
Confidence 5999999999999999999999999999999 899987654322 111 1122211 111 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..|++.+|++|||+.++++.|+.....
T Consensus 240 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 240 YQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999976544
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-14 Score=151.42 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=63.1
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc--c------------cc
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL--G------------LV 633 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~--~------------~~ 633 (755)
+.|||||.+.+. .++.++||||+||+++||+||+.|+......+.. .-+.......... . .+
T Consensus 226 ~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l---~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~ 302 (398)
T 4b99_A 226 RWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQL---QLIMMVLGTPSPAVIQAVGAERVRAYIQSL 302 (398)
T ss_dssp CTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHH---HHHHHHHCCCCGGGTC-----CHHHHHHSS
T ss_pred hHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHH---HHHHHhcCCCChHHhhhhhhhhhhhhhhcC
Confidence 459999998765 5699999999999999999999999765433321 1111111000000 0 00
Q ss_pred CCCCCCCCHH-----HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 DPTLTEFNDK-----EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 d~~l~~~~~~-----~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+. ...+.+ ....+.++...|++.||.+|||+.|+++
T Consensus 303 ~~~-~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 303 PPR-QPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp CCC-CCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCc-CCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 000 011111 1235677899999999999999999864
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-14 Score=147.16 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=73.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+......+ +... +..+... ..+......+
T Consensus 178 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~~----i~~~~~~--------~~~~~~~~~l 242 (287)
T 1u59_A 178 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VMAF----IEQGKRM--------ECPPECPPEL 242 (287)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH---HHHH----HHTTCCC--------CCCTTCCHHH
T ss_pred cccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH---HHHH----HhcCCcC--------CCCCCcCHHH
Confidence 5999999999999999999999999999999 999987654322 2221 2222111 1122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccCCC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKV 682 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~~ 682 (755)
.+++..|++.+|.+||++.+|++.|+........
T Consensus 243 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 243 YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999987655443
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-14 Score=146.89 Aligned_cols=95 Identities=24% Similarity=0.249 Sum_probs=70.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.+..++.++||||||++++||+| |+.|+......+ +. ..+..+. .+.. +......
T Consensus 178 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~---~~----~~~~~~~-----~~~~---~~~~~~~ 242 (278)
T 1byg_A 178 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD---VV----PRVEKGY-----KMDA---PDGCPPA 242 (278)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG---HH----HHHTTTC-----CCCC---CTTCCHH
T ss_pred ccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----HHHhcCC-----CCCC---cccCCHH
Confidence 46999999999999999999999999999999 999987654322 11 1122221 1111 1222346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..|++.+|.+||++.|+++.|+....
T Consensus 243 l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~ 273 (278)
T 1byg_A 243 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 273 (278)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence 7788999999999999999999999987543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=125.14 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=48.6
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+.|++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44445544444 2343332 44455555555554444444445555555555555554433334444555555555555
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCC
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~ 130 (755)
++++..+..|..+++|+.|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55433333444455555555555443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=129.99 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=31.4
Q ss_pred cCCCCCCEEEeeCccccCCCCc--cccCCCCCCEEeCCCCCCCCCCccc----ccCCCCCCEEEccCCcC
Q 004413 139 MSLKNLTDLSLRNALITGSIPS--GIGELQNLQTLDLSFNNLTGQIPRT----LFNIGSLNYLFLGNNSL 202 (755)
Q Consensus 139 ~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l 202 (755)
..+++|+.|+|++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|+++.|.+
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 33444444445555543 2333 4555566666666666655 33432 55555555555555544
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-14 Score=147.82 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=66.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC---cccc-------ccCCCC-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN---QSLG-------LVDPTL- 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~---~~~~-------~~d~~l- 637 (755)
..|+|||.+....++.++|||||||+++||+||+.|+......+. ...+....... .... .+.+..
T Consensus 183 ~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (308)
T 3g33_A 183 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ---LGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGP 259 (308)
T ss_dssp CSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH---HHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCC
T ss_pred ccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCChhhccchhhccccccCCCCC
Confidence 469999999999999999999999999999999999976543321 12222211110 0000 000000
Q ss_pred ---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 ---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+....+.++...|++.+|++|||+.|+++
T Consensus 260 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 260 RPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0001112346778999999999999999999874
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-14 Score=147.64 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=71.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++||||||++++||+||+.|+...... ...+.. .+..+....... ..+ ...+
T Consensus 200 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~~-~~~~~~~~~~~~---~~~----~~~l 267 (310)
T 2wqm_A 200 PYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCK-KIEQCDYPPLPS---DHY----SEEL 267 (310)
T ss_dssp CSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC----HHHHHH-HHHTTCSCCCCT---TTS----CHHH
T ss_pred eeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh----HHHHHH-HhhcccCCCCcc---ccc----CHHH
Confidence 3599999999999999999999999999999999998643211 111121 122222111110 112 2357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccCC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVGK 681 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~ 681 (755)
.+++..|++.+|.+||++.+|++.|+.......
T Consensus 268 ~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 268 RQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 788999999999999999999999998765543
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-15 Score=156.71 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=71.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh--------HHHHHHHHHHHhhcCccccccCCCCCCCC
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME--------KIYLLEWAWNLHENNQSLGLVDPTLTEFN 641 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 641 (755)
.|+|||.+.+..++.++||||||++++||+||+.|+....... ...-...+......+.. ...+
T Consensus 202 ~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 273 (318)
T 3lxp_A 202 FWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGER--------LPRP 273 (318)
T ss_dssp GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC--------CCCC
T ss_pred eeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccC--------CCCC
Confidence 3999999999999999999999999999999999976422110 00001111122222211 1112
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 642 DKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 642 ~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
......+.+++..||+.+|.+|||+.|+++.|+...+.
T Consensus 274 ~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~ 311 (318)
T 3lxp_A 274 DKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEK 311 (318)
T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence 23345688899999999999999999999999876543
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-13 Score=148.46 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=69.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+....... ..+. ......... ....+..... .......+
T Consensus 224 ~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~--~~~~~~~l 298 (345)
T 2v62_A 224 IEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDP-VAVQ-TAKTNLLDE-LPQSVLKWAP--SGSSCCEI 298 (345)
T ss_dssp TTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCH-HHHH-HHHHHHHHT-TTHHHHHHSC--TTSCCHHH
T ss_pred ccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccccc-HHHH-HHHHhhccc-ccHHHHhhcc--ccccHHHH
Confidence 46999999999999999999999999999999999985422111 1111 111111110 0000000000 00123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
.+++..||+.+|++||++.+|++.|+...
T Consensus 299 ~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 299 AQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 78899999999999999999999998754
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-14 Score=150.48 Aligned_cols=96 Identities=25% Similarity=0.331 Sum_probs=71.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+......+ +.++ +..+... .. +......+
T Consensus 210 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~~----~~~~~~~-----~~---~~~~~~~l 274 (327)
T 2yfx_A 210 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VLEF----VTSGGRM-----DP---PKNCPGPV 274 (327)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHHH----HHTTCCC-----CC---CTTCCHHH
T ss_pred ceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH---HHHH----HhcCCCC-----CC---CCCCCHHH
Confidence 5999999999999999999999999999999 999987544322 2222 2222111 11 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..|++.+|.+||++.+|++.|+.....+
T Consensus 275 ~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 275 YRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 78999999999999999999999998766543
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-14 Score=146.26 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=72.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|++.....+ ......... .... ..+........+
T Consensus 176 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~------~~~~~~~~~-~~~~----~~~~~~~~~~~l 244 (294)
T 4eqm_A 176 VQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVS------IAIKHIQDS-VPNV----TTDVRKDIPQSL 244 (294)
T ss_dssp CSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH------HHHHHHSSC-CCCH----HHHSCTTSCHHH
T ss_pred ccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHhhcc-CCCc----chhcccCCCHHH
Confidence 46999999999999999999999999999999999997654322 111222111 1100 001112223467
Q ss_pred HHHHHHhcccCCCCCC-CHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRP-PMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-sm~~v~~~L~~~~~~ 679 (755)
.++..+|++.+|.+|| ++.++.+.|+.....
T Consensus 245 ~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 245 SNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp HHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred HHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 7899999999999998 999999999876554
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-14 Score=144.46 Aligned_cols=95 Identities=21% Similarity=0.321 Sum_probs=68.5
Q ss_pred ccccchhhhhcCCCCc---cceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGHLTE---KADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~---ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||.+.....+. |+|||||||+++||+||+.|+......+. .......+. .+.+ +....
T Consensus 172 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~~~~~~~~~-----~~~~---~~~~~ 237 (271)
T 3kmu_A 172 PAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI------GMKVALEGL-----RPTI---PPGIS 237 (271)
T ss_dssp GGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH------HHHHHHSCC-----CCCC---CTTCC
T ss_pred ccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH------HHHHHhcCC-----CCCC---CCCCC
Confidence 5799999998765554 89999999999999999999976543221 112222211 1111 11223
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
..+.+++..|++.+|++|||+.||++.|+...
T Consensus 238 ~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 238 PHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 45778899999999999999999999998754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-14 Score=166.15 Aligned_cols=243 Identities=17% Similarity=0.124 Sum_probs=125.3
Q ss_pred CeEEecCCc--CcCC-CchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC--------------------
Q 004413 1 MLLSVAHNV--FSGS-VPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-------------------- 57 (755)
Q Consensus 1 ~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------------- 57 (755)
++|+|++|. ++.. ++..+.++++|++|+|++|...+.++..+.++++|++|++..+.
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 467888876 2211 12223456888888888873222255556666666666654331
Q ss_pred ------CC----CCCchhhhcCCCCCEEEccCCCCCCCc-chhhcCCCCCcEEEccCCCCCCC-CCccccCCCCCCeeec
Q 004413 58 ------AG----GEIPSTYAKLRNMQTLWASDAPFTGKI-PDFIGNWTKLKSLRFQGNSFQGP-IPSSLSKLASLDSLRI 125 (755)
Q Consensus 58 ------l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l 125 (755)
+. ..++..+..+++|++|++++|.++... ...+.++++|++|++++| ++.. ++.....+++|+.|++
T Consensus 267 L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 11 112333345678888888888765332 223556778888888776 3311 1222234677777777
Q ss_pred CC---------CCCCCCChhhh-cCCCCCCEEEeeCccccCCCCcccc-CCCCCCEEeCC--C----CCCCCC-----Cc
Q 004413 126 SD---------IYNVSSSLDFV-MSLKNLTDLSLRNALITGSIPSGIG-ELQNLQTLDLS--F----NNLTGQ-----IP 183 (755)
Q Consensus 126 ~~---------n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p 183 (755)
.+ +.+.......+ ..+++|+.|.+..|.+++.....+. .+++|+.|+|+ + |.+++. ++
T Consensus 346 ~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~ 425 (594)
T 2p1m_B 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425 (594)
T ss_dssp ECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH
T ss_pred ecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH
Confidence 33 12221112222 2356666666666666544333333 35666666666 2 344421 11
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcc---cCCCCCEEEeecCcCCCCCcccc----ccccccccccccc
Q 004413 184 RTLFNIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWV----TSNLQMNLVANNF 245 (755)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~~~~p~~---~~~~L~~L~Ls~N~l~g~ip~~~----~~~~~l~l~~n~~ 245 (755)
..+..+++|+.|++++ .+++..... ..++|+.|+|++|.+++..+..+ .....|++++|.+
T Consensus 426 ~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 426 AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 1244556666666654 443322211 13556666666666654333322 1222456666655
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-14 Score=148.67 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=72.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+....++.++||||||++++||+| |+.|+......+ ....+..+.. .. .+......
T Consensus 205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~-------~~~~~~~~~~-----~~---~~~~~~~~ 269 (327)
T 1fvr_A 205 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-------LYEKLPQGYR-----LE---KPLNCDDE 269 (327)
T ss_dssp TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-------HHHHGGGTCC-----CC---CCTTBCHH
T ss_pred ccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH-------HHHHhhcCCC-----CC---CCCCCCHH
Confidence 36999999999999999999999999999999 999987654322 1112222211 11 11122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+.+++..|++.+|.+||++.|+++.|+......
T Consensus 270 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 270 VYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 778999999999999999999999998866553
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-14 Score=146.22 Aligned_cols=94 Identities=28% Similarity=0.371 Sum_probs=69.6
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+....++.++||||||++++||+| |+.|+......+ +.. .+..+.. ... +......+
T Consensus 170 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~----~i~~~~~--~~~------~~~~~~~l 234 (267)
T 3t9t_A 170 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE---VVE----DISTGFR--LYK------PRLASTHV 234 (267)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHH----HHHTTCC--CCC------CTTSCHHH
T ss_pred cccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH---HHH----HHhcCCc--CCC------CccCcHHH
Confidence 5999999999999999999999999999999 899987544322 111 1122211 011 11123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++.|+++.|+...+
T Consensus 235 ~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 235 YQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 789999999999999999999999987643
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.1e-14 Score=148.84 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=69.7
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++|||||||+++||+| |+.|+........ +. .....+.. +.. +......+
T Consensus 231 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--~~----~~~~~~~~-----~~~---~~~~~~~l 296 (333)
T 2i1m_A 231 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK--FY----KLVKDGYQ-----MAQ---PAFAPKNI 296 (333)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH--HH----HHHHHTCC-----CCC---CTTCCHHH
T ss_pred cccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH--HH----HHHhcCCC-----CCC---CCCCCHHH
Confidence 5999999999999999999999999999999 8999875433221 11 22222111 111 11123467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+|||+.||++.|+....
T Consensus 297 ~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 297 YSIMQACWALEPTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987543
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-14 Score=149.29 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=65.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+........ ....+..+.. ....+..... ...+
T Consensus 214 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~------~~~~i~~~~~-~~~~~~~~~~----~~~~ 282 (349)
T 2w4o_A 214 PGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF------MFRRILNCEY-YFISPWWDEV----SLNA 282 (349)
T ss_dssp GGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH------HHHHHHTTCC-CCCTTTTTTS----CHHH
T ss_pred CCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH------HHHHHHhCCC-ccCCchhhhC----CHHH
Confidence 469999999999999999999999999999999999875433221 1111222211 1111111222 3357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 283 ~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 283 KDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 78899999999999999999975
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-13 Score=145.92 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=65.9
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH----------hhc-CccccccCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL----------HEN-NQSLGLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~----------~~~-~~~~~~~d~~ 636 (755)
.+|+|||.+.+. .++.++|||||||+++||+||+.|+......+. +...+... +.. ....+..+..
T Consensus 195 ~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (360)
T 3e3p_A 195 RYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ--LHEIVRVLGCPSREVLRKLNPSHTDVDLYNSK 272 (360)
T ss_dssp GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCC
T ss_pred cceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH--HHHHHHHcCCCCHHHHHhcccchhhccccccc
Confidence 459999998665 489999999999999999999999986543322 22221110 000 0000000000
Q ss_pred -C------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 -L------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 -l------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. .+........+.+++..|++.+|.+|||+.||++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 273 GIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp CCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 0 1112224567889999999999999999999974
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-14 Score=149.27 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=72.3
Q ss_pred ccccchhhhhcCCCCcc------ceeeeehheeehhhhC----------CcCCCCCchhhHHHHHHHHHHHhhcCccccc
Q 004413 569 HGYLAPEYAMRGHLTEK------ADVFSFGVAALEIISG----------RANSDNSLDMEKIYLLEWAWNLHENNQSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~k------sDVysfGvvllElltg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 632 (755)
.+|+|||.+.....+.+ +|||||||++|||+|| +.|+........ .. ......... ..
T Consensus 210 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~-~~-~~~~~~~~~----~~ 283 (337)
T 3mdy_A 210 KRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDP-SY-EDMREIVCI----KK 283 (337)
T ss_dssp GGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC-CH-HHHHHHHTT----SC
T ss_pred cceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCC-ch-hhhHHHHhh----hc
Confidence 46999999988777765 9999999999999999 566543322110 00 111111111 11
Q ss_pred cCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 633 VDPTLTE--FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 633 ~d~~l~~--~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
..+.+.. ...++...+.+++..||+.+|.+|||+.||++.|+...+..
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 284 LRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp CCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred cCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 2222211 12367788999999999999999999999999999876653
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.4e-14 Score=146.54 Aligned_cols=96 Identities=23% Similarity=0.275 Sum_probs=68.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 649 (755)
.|+|||...+..++.++||||||++++||+||+.|........ .+..+ ...+... . .+......+.
T Consensus 193 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~--~~~~~----~~~~~~~-----~---~~~~~~~~l~ 258 (298)
T 3pls_A 193 KWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF--DLTHF----LAQGRRL-----P---QPEYCPDSLY 258 (298)
T ss_dssp GGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG--GHHHH----HHTTCCC-----C---CCTTCCHHHH
T ss_pred cccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH--HHHHH----hhcCCCC-----C---CCccchHHHH
Confidence 6999999999999999999999999999999666644322211 12211 1111110 0 1112234677
Q ss_pred HHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 650 GVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 650 ~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+++..|++.+|.+|||+.+++++|+.....
T Consensus 259 ~li~~~l~~~p~~Rps~~~ll~~l~~~~~~ 288 (298)
T 3pls_A 259 QVMQQCWEADPAVRPTFRVLVGEVEQIVSA 288 (298)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 899999999999999999999999986554
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-14 Score=148.59 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=70.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|+|||.+.+..++.++||||||++++||+| |+.|+......+ +... ...+... . .+......+
T Consensus 214 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~~~----~~~~~~~-----~---~~~~~~~~l 278 (313)
T 3brb_A 214 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE---MYDY----LLHGHRL-----K---QPEDCLDEL 278 (313)
T ss_dssp GGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHH----HHTTCCC-----C---CBTTCCHHH
T ss_pred cccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH---HHHH----HHcCCCC-----C---CCccccHHH
Confidence 5999999999999999999999999999999 888887654332 1111 1111111 1 112223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+||++.++++.|+....
T Consensus 279 ~~li~~~l~~dp~~Rps~~~l~~~L~~l~~ 308 (313)
T 3brb_A 279 YEIMYSCWRTDPLDRPTFSVLRLQLEKLLE 308 (313)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 889999999999999999999999987654
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-14 Score=150.46 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=71.5
Q ss_pred ccccchhhhhc-------CCCCccceeeeehheeehhhhCCcCCCCCchhhH------H-----HHHHHHHHHhhcCccc
Q 004413 569 HGYLAPEYAMR-------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEK------I-----YLLEWAWNLHENNQSL 630 (755)
Q Consensus 569 ~gy~aPE~~~~-------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~------~-----~l~~~~~~~~~~~~~~ 630 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+........ . ...+............
T Consensus 192 ~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (336)
T 3g2f_A 192 IRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR 271 (336)
T ss_dssp GGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC
T ss_pred cceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccC
Confidence 46999999876 4677899999999999999999877543211000 0 0001111111111111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 631 GLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 631 ~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
..+.... .........+.+++..||+.+|++|||+.||++.|+.....
T Consensus 272 ~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~ 319 (336)
T 3g2f_A 272 PKFPEAW-KENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI 319 (336)
T ss_dssp CCCCTTC-CCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCccc-ccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence 1111111 12234667799999999999999999999999999987654
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=146.67 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=64.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++|||||||+++||+||+.|+......+. .. . ...... ....+.... ....+
T Consensus 197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~---~-i~~~~~-~~~~~~~~~----~~~~~ 264 (327)
T 3lm5_A 197 PEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET---YL---N-ISQVNV-DYSEETFSS----VSQLA 264 (327)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HH---H-HHHTCC-CCCTTTTTT----SCHHH
T ss_pred cCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH---HH---H-HHhccc-ccCchhhcc----cCHHH
Confidence 479999999999999999999999999999999999976543221 11 1 111110 011111112 23457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+|||+.|+++
T Consensus 265 ~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 265 TDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCChhhCcCHHHHhC
Confidence 78899999999999999999864
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=123.88 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=57.7
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
+.+++++|.++ .+|..+. ++|++|+|++|++.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 4454443 55556666666655555555555666666666666655433344555566666666666
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCCC
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~~ 131 (755)
+|++..+..|..+++|+.|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 665433334555666666666655544
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-14 Score=154.89 Aligned_cols=101 Identities=24% Similarity=0.192 Sum_probs=69.1
Q ss_pred ccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHH--------HHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI--------YLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 571 y~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
|+|||.+.+..++.++||||||++++||+||+.|+......... .....+......+.. ...+.
T Consensus 196 y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 267 (327)
T 3lxl_A 196 WYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQR--------LPAPP 267 (327)
T ss_dssp GSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCC--------CCCCT
T ss_pred ccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccC--------CCCCC
Confidence 99999999999999999999999999999999997542211000 000111111111111 11122
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.....+.+++..|++.+|.+|||+.||++.|+.....
T Consensus 268 ~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 268 ACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 3345678899999999999999999999999986554
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-14 Score=148.09 Aligned_cols=95 Identities=25% Similarity=0.324 Sum_probs=70.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++||||||++++||+| |+.|+......+. +...+..+... .. +......+
T Consensus 215 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~------~~~~~~~~~~~-----~~---~~~~~~~l 280 (316)
T 2xir_A 215 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE------FCRRLKEGTRM-----RA---PDYTTPEM 280 (316)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH------HHHHHHHTCCC-----CC---CTTCCHHH
T ss_pred eecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHH------HHHHhccCccC-----CC---CCCCCHHH
Confidence 5999999999999999999999999999999 9999875443221 11222222111 11 11123357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+|||+.||++.|+....
T Consensus 281 ~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 310 (316)
T 2xir_A 281 YQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 310 (316)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 788999999999999999999999987654
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=143.86 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=65.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.+ ..++.++|||||||+++||+||+.|......... ..... ...... .+. ....
T Consensus 181 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~--~~~~~---~~~~~~----~~~-------~~~~ 244 (289)
T 4fvq_A 181 IPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR--KLQFY---EDRHQL----PAP-------KAAE 244 (289)
T ss_dssp TTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHH---HTTCCC----CCC-------SSCT
T ss_pred CcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH--HHHHh---hccCCC----CCC-------CCHH
Confidence 46999999987 7899999999999999999996655433222111 11111 111111 111 1224
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++..|++.+|.+|||+.|+++.|+.....
T Consensus 245 l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 245 LANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp THHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 67789999999999999999999999987654
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-14 Score=145.11 Aligned_cols=95 Identities=18% Similarity=0.301 Sum_probs=70.2
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+......+ + .......+... + .+......+
T Consensus 189 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~---~~~~~~~~~~~----~----~~~~~~~~l 254 (291)
T 1u46_A 189 AWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ---I---LHKIDKEGERL----P----RPEDCPQDI 254 (291)
T ss_dssp GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---H---HHHHHTSCCCC----C----CCTTCCHHH
T ss_pred eeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH---H---HHHHHccCCCC----C----CCcCcCHHH
Confidence 5999999999999999999999999999999 999987654322 1 12222211110 1 111223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+||++.++++.|+....
T Consensus 255 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 255 YNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 789999999999999999999999987543
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-13 Score=161.06 Aligned_cols=94 Identities=23% Similarity=0.337 Sum_probs=70.8
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|||||.+....++.++|||||||++|||+| |+.|+......+ +...+ ..+.... .+......+
T Consensus 557 ~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~~~i----~~~~~~~--------~~~~~~~~l 621 (656)
T 2j0j_A 557 KWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIGRI----ENGERLP--------MPPNCPPTL 621 (656)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHHHH----HHTCCCC--------CCTTCCHHH
T ss_pred ceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH---HHHHH----HcCCCCC--------CCccccHHH
Confidence 6999999999999999999999999999997 999987654332 22222 1221111 122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|.+||++.||++.|+....
T Consensus 622 ~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 622 YSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999987543
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-14 Score=145.93 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=64.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++||||||++++||+||+.|+......+. . ..+.... ..+ +......+
T Consensus 171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~----~~~~~~~------~~~---~~~~~~~~ 234 (279)
T 3fdn_A 171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET---Y----KRISRVE------FTF---PDFVTEGA 234 (279)
T ss_dssp CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH---H----HHHHHTC------CCC---CTTSCHHH
T ss_pred CCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHH---H----HHHHhCC------CCC---CCcCCHHH
Confidence 469999999999999999999999999999999999876443221 1 1111111 111 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+||++.||++
T Consensus 235 ~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 235 RDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHHhccChhhCCCHHHHhh
Confidence 78899999999999999999986
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-13 Score=150.00 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=65.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|+|||.+....++.++||||+||+++||+||+.|+......+ +. ..+..+.. ....+.....+ ..+
T Consensus 177 ~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~---~~----~~i~~~~~-~~~~~~~~~~s----~~~ 244 (444)
T 3soa_A 177 PGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR---LY----QQIKAGAY-DFPSPEWDTVT----PEA 244 (444)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HH----HHHHHTCC-CCCTTTTTTSC----HHH
T ss_pred cccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHH---HH----HHHHhCCC-CCCccccccCC----HHH
Confidence 57999999999999999999999999999999999987644322 11 12222221 11111112222 356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+|||+.|+++
T Consensus 245 ~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 245 KDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHcCCChhHCCCHHHHhc
Confidence 77889999999999999999986
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=152.17 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=59.6
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
++|||||++. .+.++.++|||||||+++||+||+.|+......+. ...+......-. +.......+
T Consensus 240 ~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~---~~~i~~~~~~~~----~p~~~~~~s-- 310 (437)
T 4aw2_A 240 PDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET---YGKIMNHKERFQ----FPTQVTDVS-- 310 (437)
T ss_dssp GGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH---HHHHHTHHHHCC----CCSSCCCSC--
T ss_pred cCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH---HHhhhhcccccc----CCcccccCC--
Confidence 5699999987 57899999999999999999999999986543321 111111000000 111111222
Q ss_pred HHHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMM--RPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~--RPsm~~v~~ 671 (755)
..+.++...|+..+|++ ||++.|+.+
T Consensus 311 --~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 311 --ENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp --HHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred --HHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 23555666777666766 999999975
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-13 Score=146.25 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=38.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+.....
T Consensus 222 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~ 263 (382)
T 2vx3_A 222 RFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263 (382)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred ccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence 469999999999999999999999999999999999986543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-14 Score=163.13 Aligned_cols=245 Identities=14% Similarity=0.131 Sum_probs=150.9
Q ss_pred CeEEecCC-cCcCC-CchhhcCCCCCCEEEccCccCCCCCccccc----CCccCcEEEccccC--CCCC-CchhhhcCCC
Q 004413 1 MLLSVAHN-VFSGS-VPRELGNLKELTVLSFGNNNFSGTLPPEIG----NLAKLEQLYLNSWG--AGGE-IPSTYAKLRN 71 (755)
Q Consensus 1 ~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~--l~~~-~p~~~~~l~~ 71 (755)
++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|+|++|. +... ++..+.++++
T Consensus 133 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred cEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 45677766 44432 333344677777777777766544333332 45567777776665 1100 1111234466
Q ss_pred CCEEEccCCC--------------------------------------------------CCC----CcchhhcCCCCCc
Q 004413 72 MQTLWASDAP--------------------------------------------------FTG----KIPDFIGNWTKLK 97 (755)
Q Consensus 72 L~~L~L~~n~--------------------------------------------------l~~----~~p~~~~~l~~L~ 97 (755)
|++|++++|. +.. .++..+..+++|+
T Consensus 213 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~ 292 (594)
T 2p1m_B 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292 (594)
T ss_dssp CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCC
T ss_pred CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCC
Confidence 6666666551 111 1333334578999
Q ss_pred EEEccCCCCCCCC-CccccCCCCCCeeecCCCCCCCCChh-hhcCCCCCCEEEeeC---------ccccCCCCccc-cCC
Q 004413 98 SLRFQGNSFQGPI-PSSLSKLASLDSLRISDIYNVSSSLD-FVMSLKNLTDLSLRN---------ALITGSIPSGI-GEL 165 (755)
Q Consensus 98 ~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~---------n~l~~~~p~~~-~~l 165 (755)
+|+|++|.+++.. ...+..+++|+.|++++| +...... ....+++|+.|++.+ +.+++.....+ ..+
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 9999999977432 223568999999999987 3322222 334589999999954 34443222222 348
Q ss_pred CCCCEEeCCCCCCCCCCccccc-CCCCCCEEEcc--C----CcCCCCCCc-------ccCCCCCEEEeecCcCCCCCccc
Q 004413 166 QNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLG--N----NSLSGTLPT-------QKSENLQNIDLSYNHLSGPFPSW 231 (755)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~-------~~~~~L~~L~Ls~N~l~g~ip~~ 231 (755)
++|+.|+++.|.+++..+..+. .+++|+.|+++ + |.++..... ...++|+.|+|++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 9999999999999876666665 58999999999 4 566532211 1247999999987 666554444
Q ss_pred cc----cccccccccccccc
Q 004413 232 VT----SNLQMNLVANNFTF 247 (755)
Q Consensus 232 ~~----~~~~l~l~~n~~~~ 247 (755)
+. ....|++++|.++.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSH
T ss_pred HHHhchhccEeeccCCCCcH
Confidence 43 23468999988754
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=147.86 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=63.3
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.+|+|||.+. .+.++.++|||||||+++||+||+.|+......+ ......... ...... ..+ .
T Consensus 214 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~------~~~~~~~~~-~~~~~~---~~~----~ 279 (348)
T 1u5q_A 214 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS------ALYHIAQNE-SPALQS---GHW----S 279 (348)
T ss_dssp GGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHHSC-CCCCCC---TTS----C
T ss_pred cceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHHhcC-CCCCCC---CCC----C
Confidence 4699999985 5789999999999999999999999987544322 122222211 111111 112 2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++..||+.+|++|||+.++++
T Consensus 280 ~~l~~li~~~l~~dP~~Rps~~~ll~ 305 (348)
T 1u5q_A 280 EYFRNFVDSCLQKIPQDRPTSEVLLK 305 (348)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHHcccChhhCcCHHHHhh
Confidence 34667889999999999999999975
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=145.68 Aligned_cols=94 Identities=23% Similarity=0.304 Sum_probs=70.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++|||||||+++||+| |+.|+........ . ..+..+... ..+......+
T Consensus 217 ~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~---~----~~~~~~~~~--------~~~~~~~~~~ 281 (314)
T 2ivs_A 217 KWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERL---F----NLLKTGHRM--------ERPDNCSEEM 281 (314)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH---H----HHHHTTCCC--------CCCTTCCHHH
T ss_pred cccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH---H----HHhhcCCcC--------CCCccCCHHH
Confidence 4999999999999999999999999999999 9999876544321 1 122222111 1112223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++.||++.|+....
T Consensus 282 ~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 282 YRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 789999999999999999999999987543
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-14 Score=158.32 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=60.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++.. ..|+.++|+||+||+|+||+||+.|+..........+.. ...... ..+ +......
T Consensus 354 p~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~----~i~~~~------~~~---p~~~S~~ 420 (689)
T 3v5w_A 354 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR----MTLTMA------VEL---PDSFSPE 420 (689)
T ss_dssp GGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHH----HHHHCC------CCC---CTTSCHH
T ss_pred cCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH----hhcCCC------CCC---CccCCHH
Confidence 67999999975 479999999999999999999999997532222111111 111111 111 1111234
Q ss_pred HHHHHHHhcccCCCCCCC-----HHHHH
Q 004413 648 VIGVALLCTQASPMMRPP-----MSRVV 670 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPs-----m~~v~ 670 (755)
+.++...|++.||.+|++ +.||.
T Consensus 421 a~dLI~~lL~~dP~~Rl~~~~~ga~ei~ 448 (689)
T 3v5w_A 421 LRSLLEGLLQRDVNRRLGCLGRGAQEVK 448 (689)
T ss_dssp HHHHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred HHHHHHHHccCCHhHCCCCCCCCHHHHh
Confidence 667889999999999998 56664
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-14 Score=148.29 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=71.5
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++|||||||+++||+| |+.|+......+ +... +..+... .. +......+
T Consensus 224 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~~~----~~~~~~~-----~~---~~~~~~~l 288 (334)
T 2pvf_A 224 KWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE---LFKL----LKEGHRM-----DK---PANCTNEL 288 (334)
T ss_dssp GGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHHH----HHHTCCC-----CC---CTTCCHHH
T ss_pred ceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH---HHHH----HhcCCCC-----CC---CccCCHHH
Confidence 5999999999999999999999999999999 999987654322 2221 2222111 11 12223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..||+.+|.+||++.||++.|+.....
T Consensus 289 ~~li~~~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 289 YMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999987654
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-14 Score=155.72 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH---------HHHhhcCccccccCC-CC-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA---------WNLHENNQSLGLVDP-TL- 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~d~-~l- 637 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+......+........ ....... ....++. .+
T Consensus 223 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~ 301 (360)
T 3llt_A 223 RQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTN-GSKYVNKDELK 301 (360)
T ss_dssp GGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSG-GGGGEETTTTE
T ss_pred ccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhcc-CccccCcccce
Confidence 4699999999999999999999999999999999999765443322111111 0000000 0011110 00
Q ss_pred ---CC--CCHH---------------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 ---TE--FNDK---------------EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ---~~--~~~~---------------~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+ .... +...+.+++..|++.+|.+|||+.||++
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 302 LAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp ECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence 00 0000 0145678999999999999999999864
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-13 Score=146.14 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=65.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---cccccC---------C
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---SLGLVD---------P 635 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~d---------~ 635 (755)
.+|+|||.+.+ ..++.++|||||||+++||+||+.|+......+ ....+........ .....+ +
T Consensus 164 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (324)
T 3mtl_A 164 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE---QLHFIFRILGTPTEETWPGILSNEEFKTYNYP 240 (324)
T ss_dssp GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCC
T ss_pred ccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCChHhchhhhcchhhcccccc
Confidence 46999999876 678999999999999999999999998655433 2222222221100 000000 0
Q ss_pred CCC-----CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 TLT-----EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ~l~-----~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
... .........+.++...|++.+|.+|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 241 KYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 000 000111235678999999999999999999975
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-14 Score=148.89 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=63.1
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.+..++ .++||||+||+++||+||+.|++.....+ +. . .+..+.. .+ +......
T Consensus 177 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~---~-~i~~~~~------~~---p~~~s~~ 240 (328)
T 3fe3_A 177 PPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE---LR---E-RVLRGKY------RI---PFYMSTD 240 (328)
T ss_dssp GGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---H-HHHHCCC------CC---CTTSCHH
T ss_pred cceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH---HH---H-HHHhCCC------CC---CCCCCHH
Confidence 469999999988775 89999999999999999999997654322 11 1 1122211 11 1112235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+|||+.|+++
T Consensus 241 ~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 241 CENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp HHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 667889999999999999999874
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-13 Score=157.31 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..|+.++||||+||+++||++|+.||......+. . ..+..+... .-++.....+ ..+
T Consensus 320 ~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~---~----~~i~~~~~~-~~~~~~~~~s----~~~ 387 (573)
T 3uto_A 320 AEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET---L----RNVKSCDWN-MDDSAFSGIS----EDG 387 (573)
T ss_dssp GGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH---H----HHHHTTCCC-CCSGGGTTSC----HHH
T ss_pred ccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH---H----HHHHhCCCC-CCcccccCCC----HHH
Confidence 569999999999999999999999999999999999976543321 1 111222110 1011112222 345
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.||.+|||+.|+++
T Consensus 388 ~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 388 KDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67888999999999999999976
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-13 Score=144.31 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=66.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++||||||++++||+||+.|+...... .......... . .....+......+
T Consensus 199 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~~~~~~-~-----~~~~~~~~~~~~l 265 (309)
T 2h34_A 199 LYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS-------VMGAHINQAI-P-----RPSTVRPGIPVAF 265 (309)
T ss_dssp GGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH-------HHHHHHHSCC-C-----CGGGTSTTCCTHH
T ss_pred cCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH-------HHHHHhccCC-C-----CccccCCCCCHHH
Confidence 3599999999999999999999999999999999998754321 1112222111 0 0001111222357
Q ss_pred HHHHHHhcccCCCCCC-CHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRP-PMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-sm~~v~~~L~~~~~~~ 680 (755)
.+++..|++.+|++|| ++.++++.|+......
T Consensus 266 ~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 266 DAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp HHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred HHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 7899999999999999 9999999999866543
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-13 Score=142.30 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=73.8
Q ss_pred ccccchhhhh--------cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc---Ccccc---cc-
Q 004413 569 HGYLAPEYAM--------RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN---NQSLG---LV- 633 (755)
Q Consensus 569 ~gy~aPE~~~--------~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~---~~~~~---~~- 633 (755)
.+|+|||.+. ...++.++|||||||+++||+||+.|+........ ..+.+...... ..... ..
T Consensus 179 ~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~ 256 (319)
T 4euu_A 179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR--NKEVMYKIITGKPSGAISGVQKAEN 256 (319)
T ss_dssp GGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGG--CHHHHHHHHHHCCTTCCEEEECSTT
T ss_pred CCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccch--hHHHHHHHhcCCCcccchhhhcccC
Confidence 5799999986 57899999999999999999999999864332211 11112222211 11100 00
Q ss_pred -----CCCC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 634 -----DPTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 634 -----d~~l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
++.+ ..........+..+...|++.||++|||+.|+++...+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~ 309 (319)
T 4euu_A 257 GPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (319)
T ss_dssp CCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC
T ss_pred CccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhh
Confidence 0111 23455667778889999999999999999999998876544
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-14 Score=149.10 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=62.4
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+..+ +.++|||||||+++||+||+.|++.....+ +.+.+.......+......
T Consensus 171 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~----------------~~~~i~~~~~~~p~~~s~~ 234 (336)
T 3h4j_B 171 PNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN----------------LFKKVNSCVYVMPDFLSPG 234 (336)
T ss_dssp TTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT----------------CBCCCCSSCCCCCTTSCHH
T ss_pred cCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH----------------HHHHHHcCCCCCcccCCHH
Confidence 47999999987776 789999999999999999999987532211 1111111111112222345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+|||+.|+++
T Consensus 235 ~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 235 AQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHcCCChhHCcCHHHHHh
Confidence 678899999999999999999975
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=8.3e-14 Score=145.79 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=67.4
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCC-cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGR-ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+.+..++.++||||||++++||+||+ .|+......+ +... ...+.. ... +......+
T Consensus 197 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~---~~~~----~~~~~~--~~~------~~~~~~~l 261 (298)
T 3f66_A 197 KWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD---ITVY----LLQGRR--LLQ------PEYCPDPL 261 (298)
T ss_dssp GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT---HHHH----HHTTCC--CCC------CTTCCHHH
T ss_pred cccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH---HHHH----HhcCCC--CCC------CccCCHHH
Confidence 599999999999999999999999999999955 4554332222 1111 111111 011 11122357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++..|++.+|.+||++.|++++|+.....
T Consensus 262 ~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 292 (298)
T 3f66_A 262 YEVMLKCWHPKAEMRPSFSELVSRISAIFST 292 (298)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999886553
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-13 Score=144.63 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=70.3
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+|+|||.+....++.++||||||++++||+| |+.|+........ + ......+.. +.. +......+
T Consensus 212 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~--~----~~~~~~~~~-----~~~---~~~~~~~l 277 (313)
T 1t46_A 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK--F----YKMIKEGFR-----MLS---PEHAPAEM 277 (313)
T ss_dssp GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH--H----HHHHHHTCC-----CCC---CTTSCHHH
T ss_pred eeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH--H----HHHhccCCC-----CCC---cccCCHHH
Confidence 5999999999999999999999999999999 9999875443221 1 111221110 111 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|.+|||+.||+++|+....
T Consensus 278 ~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 307 (313)
T 1t46_A 278 YDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (313)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 788999999999999999999999987654
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-13 Score=145.59 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=63.0
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||++....+ +.++|||||||+++||+||+.|++...... .....|... .. ..+ ... .....
T Consensus 171 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~~~~~----~~---~~~-~~~----~~~~~ 237 (323)
T 3tki_A 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC-QEYSDWKEK----KT---YLN-PWK----KIDSA 237 (323)
T ss_dssp GGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTS-HHHHHHHTT----CT---TST-TGG----GSCHH
T ss_pred cCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHH-HHHHHHhcc----cc---cCC-ccc----cCCHH
Confidence 45999999988776 889999999999999999999997544321 222222211 00 000 011 12235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++|||+.|+++
T Consensus 238 ~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 238 PLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHccCChhhCcCHHHHhh
Confidence 667899999999999999999864
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-13 Score=140.42 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=65.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++||||||++++||+||+.|+....... +.. ....+.. ....+....++ ..+
T Consensus 171 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~----~~~~~~~-~~~~~~~~~~~----~~~ 238 (284)
T 3kk8_A 171 PGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR---LYA----QIKAGAY-DYPSPEWDTVT----PEA 238 (284)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHTCC-CCCTTTTTTSC----HHH
T ss_pred cCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH---HHH----HHHhccc-cCCchhhcccC----HHH
Confidence 46999999999999999999999999999999999987654322 111 1111111 11111112222 356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.|+++
T Consensus 239 ~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 239 KSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHcccChhhCCCHHHHhc
Confidence 78899999999999999999985
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-14 Score=150.06 Aligned_cols=90 Identities=18% Similarity=0.297 Sum_probs=62.5
Q ss_pred ccccchhhhhc-----------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 569 HGYLAPEYAMR-----------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~-----------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
.+|+|||.+.. ..++.++|||||||+++||+||+.|+....... ........... ....
T Consensus 192 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-----~~~~~~~~~~~-----~~~~ 261 (313)
T 3cek_A 192 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-----SKLHAIIDPNH-----EIEF 261 (313)
T ss_dssp GGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-----HHHHHHHCTTS-----CCCC
T ss_pred CCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH-----HHHHHHHhccc-----ccCC
Confidence 46999999875 578999999999999999999999987543221 11111111111 0111
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+......+.+++..|++.+|.+||++.||++
T Consensus 262 ---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 262 ---PDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp ---CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---cccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111345677889999999999999999985
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-13 Score=143.88 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=64.7
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc----------------cc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS----------------LG 631 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~----------------~~ 631 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+......... ..
T Consensus 183 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3niz_A 183 LWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQ---LPKIFSILGTPNPREWPQVQELPLWKQRTFQ 259 (311)
T ss_dssp CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTH---HHHHHHHHCCCCTTTSGGGTTSHHHHSCCCC
T ss_pred CCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHHCCCChHHhhhhhccchhhhcccc
Confidence 45999999876 5689999999999999999999999976544332 1111111111000 00
Q ss_pred ccCCCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 632 LVDPTL-TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 632 ~~d~~l-~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+... .........++.++...|++.+|.+|||+.|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 260 VFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp CCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 001000 0001112245778999999999999999999975
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-13 Score=141.92 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=67.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++||||||++++||+||+.|+......+ +.. .+.++.... + +......+
T Consensus 180 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~----~i~~~~~~~-----~---~~~~~~~l 244 (279)
T 2w5a_A 180 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE---LAG----KIREGKFRR-----I---PYRYSDEL 244 (279)
T ss_dssp CTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHTCCCC-----C---CTTSCHHH
T ss_pred ccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHH---HHH----HHhhccccc-----C---CcccCHHH
Confidence 46999999999999999999999999999999999987654321 221 222232211 1 11223467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..|++.+|.+||++.||++.+..
T Consensus 245 ~~li~~~l~~~p~~Rps~~~ll~~~~~ 271 (279)
T 2w5a_A 245 NEIITRMLNLKDYHRPSVEEILENPLI 271 (279)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred HHHHHHHcCCCcccCCCHHHHHhChhh
Confidence 789999999999999999999876543
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-13 Score=148.56 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=38.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
..|+|||++.+..++.++|||||||+++||+||+.|+.....
T Consensus 263 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~ 304 (429)
T 3kvw_A 263 RFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDE 304 (429)
T ss_dssp GGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred CCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCH
Confidence 469999999999999999999999999999999999876543
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-14 Score=150.62 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=67.6
Q ss_pred ccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh--------HHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 571 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME--------KIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 571 y~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
|+|||.+.+..++.++||||||++++||+||+.|........ .......+...+..+... ..+.
T Consensus 195 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 266 (302)
T 4e5w_A 195 WYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRL--------PCPP 266 (302)
T ss_dssp GCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCC--------CCCT
T ss_pred ccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCC--------CCCC
Confidence 999999999999999999999999999999998854211000 000011111122221111 1122
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
.....+.+++..|++.+|.+|||+.||+++|+..
T Consensus 267 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 267 NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 2334678899999999999999999999999864
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-13 Score=139.00 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=67.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++||||||++++||+||+.|+.. .. .+ ......+.... .++ ..+
T Consensus 185 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~-----~~---~~-~~~~~~~~~~~-------~~~----~~~ 244 (284)
T 2a19_B 185 LRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE-----TS---KF-FTDLRDGIISD-------IFD----KKE 244 (284)
T ss_dssp CTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH-----HH---HH-HHHHHTTCCCT-------TSC----HHH
T ss_pred ccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh-----HH---HH-HHHhhcccccc-------cCC----HHH
Confidence 479999999999999999999999999999999988531 11 11 11122222111 122 246
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+++..|++.+|.+||++.|+++.|+.....+
T Consensus 245 ~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 245 KTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 67889999999999999999999998765543
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-14 Score=148.22 Aligned_cols=97 Identities=16% Similarity=0.093 Sum_probs=53.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++|||||||+++||+||+.|+..........-...+...+..+... .+. +........+
T Consensus 173 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~--~~~---~~~~~~s~~~ 247 (325)
T 3kn6_A 173 LHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFS--FEG---EAWKNVSQEA 247 (325)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCC--CCS---HHHHTSCHHH
T ss_pred cCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCC--CCc---ccccCCCHHH
Confidence 46999999999999999999999999999999999987533211000111122222222211 000 0001123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.++...|++.+|.+|||+.|++
T Consensus 248 ~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 248 KDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp HHHHHHHHCCCTTTCCCTTTST
T ss_pred HHHHHHHCCCChhHCCCHHHHh
Confidence 7899999999999999999886
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-13 Score=146.51 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=70.1
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh---------HHHHHHHHHHHhhcCccccccCCCCCCC
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME---------KIYLLEWAWNLHENNQSLGLVDPTLTEF 640 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 640 (755)
.|+|||.+.+..++.++||||||++++||+||+.|+......- .......+...+..+... ..
T Consensus 213 ~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 284 (326)
T 2w1i_A 213 FWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRL--------PR 284 (326)
T ss_dssp GGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCC--------CC
T ss_pred eEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCC--------CC
Confidence 3999999999999999999999999999999998865321000 011111222222222111 11
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 641 NDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 641 ~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+......+.+++..||+.+|++||++.||++.|+...+
T Consensus 285 ~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~ 322 (326)
T 2w1i_A 285 PDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 322 (326)
T ss_dssp CTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 22234567889999999999999999999999987543
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.3e-13 Score=139.05 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=65.9
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH--------HHHhhcCc-cc--cccCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA--------WNLHENNQ-SL--GLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~--------~~~~~~~~-~~--~~~d~~ 636 (755)
.+|+|||.+.+ ..++.++|||||||+++||+||+.|+......+........ ...+.... .. .+-++.
T Consensus 166 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 4agu_A 166 RWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPE 245 (311)
T ss_dssp GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCS
T ss_pred ccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCcc
Confidence 46999999876 67899999999999999999999999766543322211110 01111110 00 111111
Q ss_pred CC-C---CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 LT-E---FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 l~-~---~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
-. . ........+.+++..|++.+|.+|||+.|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 246 DMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp SCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred ccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 00 0 00112345778999999999999999999985
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-13 Score=141.41 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=61.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+. +.++.++||||||++++||+||+.|+......+. .... .. .... ........ ...+
T Consensus 190 ~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~---~~~~---~~-~~~~--~~~~~~~~----~~~~ 255 (285)
T 3is5_A 190 ALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV---QQKA---TY-KEPN--YAVECRPL----TPQA 255 (285)
T ss_dssp GGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHH---HH-CCCC--CCC--CCC----CHHH
T ss_pred cCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH---Hhhh---cc-CCcc--cccccCcC----CHHH
Confidence 4699999875 6789999999999999999999999976543221 1111 11 1000 00000112 2356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.||++
T Consensus 256 ~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 256 VDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 68899999999999999999974
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-13 Score=145.26 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=64.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++||||||++++||+||+.|+....... .... ...+.. +.+. ......+
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~----~~~~~~-----~~~~---~~~~~~l 247 (303)
T 3a7i_A 183 PFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK---VLFL----IPKNNP-----PTLE---GNYSKPL 247 (303)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHH----HHHSCC-----CCCC---SSCCHHH
T ss_pred cCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH---HHHH----hhcCCC-----CCCc---cccCHHH
Confidence 35999999999999999999999999999999999987654322 1111 111111 1111 1112357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+|||+.||++
T Consensus 248 ~~li~~~l~~dp~~Rps~~~ll~ 270 (303)
T 3a7i_A 248 KEFVEACLNKEPSFRPTAKELLK 270 (303)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCChhhCcCHHHHhh
Confidence 78999999999999999999975
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-12 Score=119.74 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=84.3
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|++++|+|+ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788888887 4666553 78888888888888777778888888888888888888776667788888888888888
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQG 108 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 108 (755)
++++..+..|.++++|++|+|++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8886666678888888888888888874
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-13 Score=146.80 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=65.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
+.|+|||.+....++.++|||||||+++||+||+.|+......+ +. ..... +... .++.. ... ...
T Consensus 167 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~---~~i~~-~~~~--~~~~~~~~~----s~~ 233 (321)
T 1tki_A 167 PEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ---II---ENIMN-AEYT--FDEEAFKEI----SIE 233 (321)
T ss_dssp GGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---HHHHH-TCCC--CCHHHHTTS----CHH
T ss_pred hhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH---HH---HHHHc-CCCC--CChhhhccC----CHH
Confidence 57999999999889999999999999999999999997654322 11 11111 1110 00000 111 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+|||+.|+++
T Consensus 234 ~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 234 AMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHhc
Confidence 778999999999999999999986
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-13 Score=140.98 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=63.8
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------cccccC-------
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------SLGLVD------- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~d------- 634 (755)
..|+|||.+.+.. ++.++|||||||+++||+||+.|+....... .....+........ ..+..+
T Consensus 165 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (292)
T 3o0g_A 165 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD--DQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMY 242 (292)
T ss_dssp GGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHH--HHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCC
T ss_pred cCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHHHhCCCChhhhhhhcccccccccccc
Confidence 4599999998766 8999999999999999999998865433221 12222222211100 000000
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 ---PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ---~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..........+.++...|++.+|++|||+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 243 PATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0001111223345678999999999999999999974
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-13 Score=139.94 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=64.9
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc--------ccccCCCCC-
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS--------LGLVDPTLT- 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~d~~l~- 638 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+......... ....++...
T Consensus 164 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (288)
T 1ob3_A 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ---LMRIFRILGTPNSKNWPNVTELPKYDPNFTV 240 (288)
T ss_dssp CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCCTTTSTTGGGSTTCCTTCCC
T ss_pred ccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHHCCCChhhchhhhccccccccccc
Confidence 46999999876 4689999999999999999999999976543221 1112221111000 001111110
Q ss_pred -------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 -------EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 -------~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.........+.++...|++.+|++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 011112345678999999999999999999874
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-13 Score=143.23 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+ ............ +. .........+
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~------~~~~~~~~~~~~----~~--~~~~~~~~~l 250 (311)
T 3ork_A 183 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS------VAYQHVREDPIP----PS--ARHEGLSADL 250 (311)
T ss_dssp CTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCCCCC----HH--HHSTTCCHHH
T ss_pred cccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHhcCCCCC----cc--cccCCCCHHH
Confidence 46999999999999999999999999999999999997654322 122222221110 00 0001123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHH-HHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVV-AMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~-~~L~~ 675 (755)
.+++..|++.+|++||++.+++ ..+..
T Consensus 251 ~~li~~~l~~dP~~R~~~~~~l~~~l~~ 278 (311)
T 3ork_A 251 DAVVLKALAKNPENRYQTAAEMRADLVR 278 (311)
T ss_dssp HHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence 7889999999999999776665 44444
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-13 Score=145.50 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=65.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++|||||||+++||+||+.|+......+ +.. .+..+... ...+....+ ...+
T Consensus 194 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~---~~~----~i~~~~~~-~~~~~~~~~----~~~~ 261 (362)
T 2bdw_A 194 PGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR---LYA----QIKAGAYD-YPSPEWDTV----TPEA 261 (362)
T ss_dssp TTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHTCCC-CCTTGGGGS----CHHH
T ss_pred ccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH---HHH----HHHhCCCC-CCcccccCC----CHHH
Confidence 46999999999999999999999999999999999987543321 111 12222111 111111122 2356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++||++.|+++
T Consensus 262 ~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 262 KSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcCCChhhCcCHHHHhc
Confidence 78899999999999999999975
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.4e-13 Score=141.95 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=66.2
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHH----------HHHhhc-CccccccCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWA----------WNLHEN-NQSLGLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~----------~~~~~~-~~~~~~~d~~ 636 (755)
.+|+|||.+.+. .++.++|||||||+++||+||+.|+......+.. ...+ ...+.. ........+.
T Consensus 188 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
T 4aaa_A 188 RWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQL--YHIMMCLGNLIPRHQELFNKNPVFAGVRLPE 265 (331)
T ss_dssp CTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCSCCHHHHHHHHHCGGGTTCCCCC
T ss_pred ccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHH--HHHHHHhCCCChhhhhHhhhccccccccCcc
Confidence 459999998875 7899999999999999999999999765443221 1111 111111 1111111122
Q ss_pred CCC-CC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 LTE-FN-----DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 l~~-~~-----~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.. .+ ......+.+++..|++.+|++|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 266 IKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp CSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 211 11 122456888999999999999999999874
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-13 Score=138.95 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=62.1
Q ss_pred ccccchhhhhcCC--CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGH--LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~--~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+|+|||.+..+. ++.++||||||++++||+||+.|+........ ..+..... -..+.+ +.....
T Consensus 187 ~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~-------~~~~~~---~~~~~~ 253 (295)
T 2clq_A 187 LQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQA---AMFKVGMF-------KVHPEI---PESMSA 253 (295)
T ss_dssp GGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHH---HHHHHHHH-------CCCCCC---CTTSCH
T ss_pred ccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhH---HHHhhccc-------cccccc---cccCCH
Confidence 4699999987654 89999999999999999999999864322211 11111111 011222 112234
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++..|++.+|++||++.|+++
T Consensus 254 ~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 254 EAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHccCChhhCCCHHHHhc
Confidence 5678899999999999999999974
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-13 Score=147.25 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=65.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
.+|+|||++....++.++|||||||+++||+||+.|+......+ ....+ ..+.. ..++.. ... ...
T Consensus 214 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~---~~~~i----~~~~~--~~~~~~~~~~----s~~ 280 (387)
T 1kob_A 214 AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE---TLQNV----KRCDW--EFDEDAFSSV----SPE 280 (387)
T ss_dssp GGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HHHHH----HHCCC--CCCSSTTTTS----CHH
T ss_pred CCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH---HHHHH----HhCCC--CCCccccccC----CHH
Confidence 46999999999999999999999999999999999997644322 11111 11111 111111 222 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.|+++
T Consensus 281 ~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 281 AKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHcCCChhHCcCHHHHhh
Confidence 678999999999999999999975
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=140.86 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=66.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HH---------------HHHHHHhhcCc----
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LL---------------EWAWNLHENNQ---- 628 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~---------------~~~~~~~~~~~---- 628 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+......+... +. ..+........
T Consensus 190 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (371)
T 2xrw_A 190 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAG 269 (371)
T ss_dssp CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCC
T ss_pred CCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccc
Confidence 46999999999999999999999999999999999997654322110 00 00000010000
Q ss_pred --cccccC----CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 629 --SLGLVD----PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 629 --~~~~~d----~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+. +...+........+.++...|++.+|.+|||+.|+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 270 YSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp CCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 000000 0000011223557888999999999999999999986
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-13 Score=144.17 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc-----------cccccCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ-----------SLGLVDPT 636 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~d~~ 636 (755)
..|+|||.+.. ..++.++|||||||+++||+||+.|+......+.. ..+........ ..+.+...
T Consensus 197 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (362)
T 3pg1_A 197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQL---NKIVEVVGTPKIEDVVMFSSPSARDYLRNS 273 (362)
T ss_dssp GGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHHHCCCCHHHHHHTSCHHHHHHTTTC
T ss_pred ceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHH---HHHHHHcCCCChHHhhhccchhhhHHHHhh
Confidence 35999999876 78999999999999999999999999765432211 11111100000 00000000
Q ss_pred C--------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 L--------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 l--------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+ ..........+.+++..|++.+|.+|||+.|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 274 LSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp CCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 1 0011122345778999999999999999999975
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-13 Score=140.76 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=64.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++||||||++++||+||+.|++.....+. ... +... +..+ +......+
T Consensus 176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~-~~~~------~~~~---~~~~~~~~ 239 (284)
T 2vgo_A 176 LDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTET------HRR-IVNV------DLKF---PPFLSDGS 239 (284)
T ss_dssp GGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHH-HHTT------CCCC---CTTSCHHH
T ss_pred CCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHH------HHH-Hhcc------ccCC---CCcCCHHH
Confidence 469999999999999999999999999999999999976543221 111 1111 1111 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+||++.|+++
T Consensus 240 ~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 240 KDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhhcCHhhCCCHHHHhh
Confidence 78899999999999999999985
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-13 Score=141.84 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=64.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHH---------HHHHhhcCc-----------
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEW---------AWNLHENNQ----------- 628 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~---------~~~~~~~~~----------- 628 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+....... .......+.
T Consensus 194 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (360)
T 3eqc_A 194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRP 273 (360)
T ss_dssp CTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------
T ss_pred CCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCC
Confidence 469999999999999999999999999999999999976543321111000 000000000
Q ss_pred ---ccccc----CCCCCCCC-HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 629 ---SLGLV----DPTLTEFN-DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 629 ---~~~~~----d~~l~~~~-~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+ .......+ ......+.+++..|++.+|++|||+.|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 274 PMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00000 00000000 011235778899999999999999999985
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-13 Score=144.67 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++|||||||+++||+||+.|+......+. .. .. ..... .. .+.. .......+
T Consensus 181 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~---~~-~~~~~-~~-~~~~---~~~~~~~~ 248 (326)
T 2y0a_A 181 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET---LA---NV-SAVNY-EF-EDEY---FSNTSALA 248 (326)
T ss_dssp TTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH---HH---HH-HHTCC-CC-CHHH---HTTSCHHH
T ss_pred cCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH---HH---HH-HhcCC-Cc-Cccc---cccCCHHH
Confidence 469999999999999999999999999999999999876443221 11 11 11110 00 0000 01112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+|||+.|+++
T Consensus 249 ~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 249 KDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhhCCCHHHHhc
Confidence 77899999999999999999986
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-13 Score=146.01 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=65.5
Q ss_pred cccchhhhhcCC---CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 570 GYLAPEYAMRGH---LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 570 gy~aPE~~~~~~---~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
+|+|||.+.... ++.++|||||||+++||+||+.|++....... .+. ...... .. -+....+ ..
T Consensus 208 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~----~~~~~~-~~---~~~~~~~----~~ 274 (317)
T 2buj_A 208 SYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-SVA----LAVQNQ-LS---IPQSPRH----SS 274 (317)
T ss_dssp GGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-CHH----HHHHCC------CCCCTTS----CH
T ss_pred ccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-hhh----HHhhcc-CC---CCccccC----CH
Confidence 499999887543 78999999999999999999999753111100 011 111110 00 0111112 34
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+.+++..|++.+|.+||++.+|++.|+....
T Consensus 275 ~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 275 ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 67789999999999999999999999987654
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-13 Score=143.94 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=60.9
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.+..+ +.++|||||||+++||+||+.|+..... ...... ..+......
T Consensus 193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---------------------~~~~~~-~~~~~~~~~ 250 (335)
T 3dls_A 193 IEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE---------------------TVEAAI-HPPYLVSKE 250 (335)
T ss_dssp GGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG---------------------GTTTCC-CCSSCCCHH
T ss_pred ccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH---------------------HHhhcc-CCCcccCHH
Confidence 47999999988777 8899999999999999999999864211 011111 001112235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++|||+.|+++
T Consensus 251 l~~li~~~L~~dP~~Rps~~ell~ 274 (335)
T 3dls_A 251 LMSLVSGLLQPVPERRTTLEKLVT 274 (335)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 778889999999999999999986
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-12 Score=143.00 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-------hh--cCccccccCCCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-------HE--NNQSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-------~~--~~~~~~~~d~~l~ 638 (755)
..|+|||++.+. .++.++|||||||+++||+||+.|+......+ .+.+.+... +. .....+..-+.+.
T Consensus 220 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~--~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~ 297 (420)
T 1j1b_A 220 RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD--QLVEIIKVLGTPTREQIREMNPNYTEFKFPQIK 297 (420)
T ss_dssp TTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCC
T ss_pred CCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCCHHHHHhhChhhhhhccCccC
Confidence 459999998764 79999999999999999999999997654322 222222211 10 1111111122221
Q ss_pred CCCH------HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFND------KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~------~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+. .....+.++...|++.+|.+||++.|+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 298 AHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp CCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 1111 22356788999999999999999999985
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-13 Score=146.48 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=65.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++....++.++|||||||+++||+||+.|+......+. ......... ...++....+ ...+
T Consensus 252 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~------~~~i~~~~~--~~~~~~~~~~----~~~~ 319 (373)
T 2x4f_A 252 PEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET------LNNILACRW--DLEDEEFQDI----SEEA 319 (373)
T ss_dssp CTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHTCC--CSCSGGGTTS----CHHH
T ss_pred CcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhccC--CCChhhhccC----CHHH
Confidence 469999999999999999999999999999999999976543221 111111110 0111111122 2356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+||++.|+++
T Consensus 320 ~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 320 KEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcCCChhhCCCHHHHhc
Confidence 78899999999999999999986
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=118.57 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=78.7
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 5778888875 5666554 688888888888887777778888888888888888876655667788888888888888
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+++..+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 88555555777888888888888776
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-13 Score=144.53 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=63.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+....... +. ..... +.. .+ +......+
T Consensus 169 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~~---~~i~~-~~~------~~---p~~~s~~~ 232 (337)
T 1o6l_A 169 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER---LF---ELILM-EEI------RF---PRTLSPEA 232 (337)
T ss_dssp GGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHHHH-CCC------CC---CTTSCHHH
T ss_pred hhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH---HH---HHHHc-CCC------CC---CCCCCHHH
Confidence 56999999999999999999999999999999999987643322 11 11111 111 11 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|.+|| ++.||.+
T Consensus 233 ~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 233 KSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 7788899999999999 8888864
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-13 Score=143.06 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=51.3
Q ss_pred ccccchhhh----hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC-CCCHH
Q 004413 569 HGYLAPEYA----MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT-EFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~----~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~-~~~~~ 643 (755)
.+|+|||.+ ....++.++|||||||+++||+||+.|+....... +..... ..+. .+.+. .....
T Consensus 189 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~~~~~-~~~~-----~~~~~~~~~~~ 257 (327)
T 3aln_A 189 RPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-----DQLTQV-VKGD-----PPQLSNSEERE 257 (327)
T ss_dssp -----------------CCSHHHHHHHHHHHHHHHHSCCCSSCC------------CCC-CCSC-----CCCCCCCSSCC
T ss_pred ccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-----HHHHHH-hcCC-----CCCCCCccccc
Confidence 459999998 56779999999999999999999999987532110 000000 0011 11111 11112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.+++..|++.+|++||++.||++
T Consensus 258 ~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 258 FSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 2346778999999999999999999974
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-13 Score=147.23 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=57.3
Q ss_pred cccchhhh---hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 570 GYLAPEYA---MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 570 gy~aPE~~---~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.|+|||.+ ....++.++|||||||+++||+||+.|+....... ... +... .+..... ..
T Consensus 215 ~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~------~~~-----~~~~---~~~~~~~----~~ 276 (337)
T 3ll6_A 215 MYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR------IVN-----GKYS---IPPHDTQ----YT 276 (337)
T ss_dssp ---------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------------CC---CCTTCCS----SG
T ss_pred CcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH------hhc-----Cccc---CCccccc----ch
Confidence 49999998 57788999999999999999999999986422110 000 0000 0000111 12
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
.+.+++..|++.+|.+||++.|+++.|+......
T Consensus 277 ~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~ 310 (337)
T 3ll6_A 277 VFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310 (337)
T ss_dssp GGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 3667899999999999999999999998876543
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-13 Score=144.99 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=61.5
Q ss_pred ccccchhhhhc---CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMR---GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~---~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.+|+|||++.. ..++.++|||||||+++||+||+.|+..........+..... ... ..++....
T Consensus 178 ~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~----~~~---------~~~p~~~s 244 (384)
T 4fr4_A 178 KPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFE----TTV---------VTYPSAWS 244 (384)
T ss_dssp GGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHH----HCC---------CCCCTTSC
T ss_pred ccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHh----hcc---------cCCCCcCC
Confidence 46999999864 458999999999999999999999997543322222222111 111 01122223
Q ss_pred HHHHHHHHHhcccCCCCCCC-HHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPP-MSRVV 670 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPs-m~~v~ 670 (755)
..+..++..|++.+|.+||+ +.+|.
T Consensus 245 ~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 245 QEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp HHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred HHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 46778899999999999998 66665
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-13 Score=140.85 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=48.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++||||||++++||+||+.|+......+. . ..+..... ..+......+
T Consensus 176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~---------~~~~~~~~-~~~~~~~~~~ 239 (278)
T 3cok_A 176 PNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT------L---------NKVVLADY-EMPSFLSIEA 239 (278)
T ss_dssp ----------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--------------------CCSSCC-CCCTTSCHHH
T ss_pred CCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH------H---------HHHhhccc-CCccccCHHH
Confidence 469999999999999999999999999999999999875432211 0 00111111 1111123356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||++.+|++
T Consensus 240 ~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 240 KDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHHHHHHcccCHhhCCCHHHHhc
Confidence 78999999999999999999874
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-13 Score=140.43 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=61.6
Q ss_pred ccccchhhh----hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYA----MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~----~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
.+|+|||.+ ....++.++|||||||+++||+||+.|++...... ..+ ........ +... ....
T Consensus 173 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~----~~~~~~~~------~~~~--~~~~ 239 (290)
T 3fme_A 173 KPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF-QQL----KQVVEEPS------PQLP--ADKF 239 (290)
T ss_dssp CCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH-HHH----HHHHHSCC------CCCC--TTTS
T ss_pred ccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchH-HHH----HHHhccCC------CCcc--cccC
Confidence 569999996 56789999999999999999999999987533221 111 11122111 1110 0112
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|++|||+.||++
T Consensus 240 ~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 240 SAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 235778899999999999999999975
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-13 Score=140.61 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=64.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc--c----c--cccCCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ--S----L--GLVDPTLTE 639 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~--~----~--~~~d~~l~~ 639 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+........ . . ...++.+..
T Consensus 172 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (317)
T 2pmi_A 172 LWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ---LKLIFDIMGTPNESLWPSVTKLPKYNPNIQQ 248 (317)
T ss_dssp CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCTTTCGGGGGCTTCCTTCCC
T ss_pred ccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCChhHhhhhhhhhhccccccc
Confidence 46999999876 4689999999999999999999999976544322 222222111000 0 0 000111100
Q ss_pred -------------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 640 -------------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 640 -------------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
........+.++...|++.+|++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 249 RPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp CCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 00011235778999999999999999999864
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-13 Score=145.44 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=65.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++|||||||+++||+||+.|+..........+. ..+..+... . ... ........+
T Consensus 184 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~----~~i~~~~~~-~-~~~---~~~~~s~~~ 254 (342)
T 2qr7_A 184 ANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEIL----ARIGSGKFS-L-SGG---YWNSVSDTA 254 (342)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHH----HHHHHCCCC-C-CST---TTTTSCHHH
T ss_pred ccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHH----HHHccCCcc-c-Ccc---ccccCCHHH
Confidence 4699999998888999999999999999999999999753322222222 222222211 1 111 111122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++||++.||++
T Consensus 255 ~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 255 KDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHCCCChhHCcCHHHHhc
Confidence 77889999999999999999975
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-13 Score=142.11 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=68.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHH-----HhhcCccccccC---------
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWN-----LHENNQSLGLVD--------- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~d--------- 634 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+.......... .+.........+
T Consensus 198 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 277 (339)
T 1z57_A 198 RHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEH 277 (339)
T ss_dssp GGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTT
T ss_pred ccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhcccccccc
Confidence 579999999999999999999999999999999999976554332221111100 000000000000
Q ss_pred -----------CCC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 -----------PTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 -----------~~l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+ ......+...+.+++..|++.+|.+|||+.||++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 278 SSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp SHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence 000 1123345677889999999999999999999974
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-13 Score=140.89 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---cc-c------cc----C
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---SL-G------LV----D 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~-~------~~----d 634 (755)
.+|+|||.+....++.++|||||||+++||+||+.|+......+ ....+........ .. . .+ .
T Consensus 183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (326)
T 1blx_A 183 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD---QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSA 259 (326)
T ss_dssp CTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCC
T ss_pred cceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH---HHHHHHHHcCCCCcccCccccccchhhhcccCc
Confidence 46999999999999999999999999999999999997654322 1222222111000 00 0 00 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..........+.+++..|++.+|++||++.|+++
T Consensus 260 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 260 QPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred chhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0111111222345778999999999999999999974
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-13 Score=138.99 Aligned_cols=91 Identities=24% Similarity=0.402 Sum_probs=62.8
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcccc----ccCCCC-CCCCHH
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLG----LVDPTL-TEFNDK 643 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~d~~l-~~~~~~ 643 (755)
+|+|||.+.. ..++.++||||||++++||+||+.|+......... ..... +.... ..++.. ..+
T Consensus 191 ~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~--- 260 (303)
T 2vwi_A 191 CWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVL------MLTLQ-NDPPSLETGVQDKEMLKKY--- 260 (303)
T ss_dssp TTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHH------HHHHT-SSCCCTTC-----CCCCCC---
T ss_pred cccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHH------HHHhc-cCCCccccccccchhhhhh---
Confidence 4999999876 57899999999999999999999998765443211 11111 11111 111111 122
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|.+||++.|+++
T Consensus 261 -~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 261 -GKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp -CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -hHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 235778899999999999999999975
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-13 Score=145.67 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=64.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
++|+|||.+....++.++|||||||+++||+||+.|+......+ +. .. +..+... +++.. ... ...
T Consensus 182 ~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~---~~---~~-i~~~~~~--~~~~~~~~~----s~~ 248 (361)
T 2yab_A 182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TL---AN-ITAVSYD--FDEEFFSQT----SEL 248 (361)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HH-HHTTCCC--CCHHHHTTS----CHH
T ss_pred ccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH---HH---HH-HHhcCCC--CCchhccCC----CHH
Confidence 56999999999999999999999999999999999997654322 11 11 1111110 11100 111 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+|||+.|+++
T Consensus 249 ~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 249 AKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 667889999999999999999874
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-13 Score=138.89 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=62.3
Q ss_pred ccccchhhhhcCC--CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGH--LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~--~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||...... .+.++||||||++++||+||+.|+......+ + ...+..+.. .+ +.....
T Consensus 175 ~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~----~~~i~~~~~------~~---~~~~~~ 238 (305)
T 2wtk_C 175 PAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYK---L----FENIGKGSY------AI---PGDCGP 238 (305)
T ss_dssp GGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHH---H----HHHHHHCCC------CC---CSSSCH
T ss_pred CCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHH---H----HHHHhcCCC------CC---CCccCH
Confidence 4699999987643 4789999999999999999999987643221 1 111222211 11 112233
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++..|++.+|.+||++.|+++
T Consensus 239 ~l~~li~~~l~~dp~~Rps~~~ll~ 263 (305)
T 2wtk_C 239 PLSDLLKGMLEYEPAKRFSIRQIRQ 263 (305)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHccCChhhCCCHHHHhc
Confidence 5678899999999999999999985
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=137.57 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||.+. ...++.++||||||++++||+||+.|+....... ....... +...... .+..
T Consensus 181 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~-~~~~~~~------~~~~ 247 (302)
T 2j7t_A 181 PYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR------VLLKIAK-SDPPTLL------TPSK 247 (302)
T ss_dssp GGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH------HHHHHHH-SCCCCCS------SGGG
T ss_pred hhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH------HHHHHhc-cCCcccC------Cccc
Confidence 4699999884 6788999999999999999999999987654322 1111111 1111110 1112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.++...|++.+|.+|||+.|+++
T Consensus 248 ~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 248 WSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp SCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred cCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 2345778999999999999999999864
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-13 Score=143.91 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=60.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh--HHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME--KIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
+.|||||++.+..++.++|||||||+++||+||+.|++.....+ .....+++......+.. .+ +.....
T Consensus 217 ~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~------~~---p~~~s~ 287 (396)
T 4dc2_A 217 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI------RI---PRSLSV 287 (396)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCC------CC---CTTSCH
T ss_pred cccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcccc------CC---CCcCCH
Confidence 46999999999999999999999999999999999996432111 11112223333222221 11 112233
Q ss_pred HHHHHHHHhcccCCCCCCCH
Q 004413 647 RVIGVALLCTQASPMMRPPM 666 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm 666 (755)
.+.++...|++.+|.+||+.
T Consensus 288 ~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 288 KAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHHHHHHHHTCSCTTTSTTC
T ss_pred HHHHHHHHHhcCCHhHcCCC
Confidence 56778899999999999985
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-13 Score=144.90 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=73.4
Q ss_pred ccccchhhhhc--------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC---ccc---cccC
Q 004413 569 HGYLAPEYAMR--------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN---QSL---GLVD 634 (755)
Q Consensus 569 ~gy~aPE~~~~--------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~---~~~---~~~d 634 (755)
.+|+|||++.. ..++.++|||||||+++||+||+.|+........ ..+.+....... ... ...+
T Consensus 179 ~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~ 256 (396)
T 4eut_A 179 EEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRR--NKEVMYKIITGKPSGAISGVQKAEN 256 (396)
T ss_dssp CTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTT--CHHHHHHHHHSCCTTCCEEEECSTT
T ss_pred ccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccc--hHHHHHHHhcCCCcccchhheeccC
Confidence 57999999875 6788999999999999999999999864322111 111122222111 000 0000
Q ss_pred ------CCC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 635 ------PTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 635 ------~~l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
..+ ..........+..+...|++.||++||++.|+++.++....
T Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 257 GPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp CCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred CCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 111 23445667778889999999999999999999998887554
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-13 Score=142.68 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=64.0
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH--------HHhhcCccc------ccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW--------NLHENNQSL------GLV 633 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~--------~~~~~~~~~------~~~ 633 (755)
..|+|||.+.. ..++.++|||||||+++||+||+.|+........ .+..... ..+...... +.+
T Consensus 194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (330)
T 3nsz_A 194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD-QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDIL 272 (330)
T ss_dssp GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH-HHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHH
T ss_pred ccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHH-HHHHHHHhcCCchhhhHHHHhccccccchhhhh
Confidence 35999999877 7799999999999999999999999854432211 1111111 111111000 000
Q ss_pred C--------CCC-CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 D--------PTL-TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 d--------~~l-~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. ... ..........+.++...|++.+|.+|||+.|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 273 GRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 0 000 0011112346788999999999999999999975
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-13 Score=146.94 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=66.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHH-HHHH---------------HHHHhhcCc-cc-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIY-LLEW---------------AWNLHENNQ-SL- 630 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~-l~~~---------------~~~~~~~~~-~~- 630 (755)
.+|+|||.+.+..++.++||||+||+++||++|+.|+......+... +.+. +........ ..
T Consensus 227 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~ 306 (464)
T 3ttj_A 227 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 306 (464)
T ss_dssp CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCC
T ss_pred ccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCC
Confidence 45999999999999999999999999999999999997654322111 1000 001110000 00
Q ss_pred ----cccCCCC-C---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 631 ----GLVDPTL-T---EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 631 ----~~~d~~l-~---~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+...+ . +........+.++...|++.||++|||+.|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 307 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp CCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000 0 001112456788999999999999999999985
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=138.91 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=61.4
Q ss_pred ccccchhhhhcCC----CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAMRGH----LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~~~~----~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
++|||||++.... ++.++|||||||+++||+||+.|+......+. .. ....... ...-|....++
T Consensus 233 ~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~---~~---~i~~~~~--~~~~p~~~~~s--- 301 (410)
T 3v8s_A 233 PDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT---YS---KIMNHKN--SLTFPDDNDIS--- 301 (410)
T ss_dssp GGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH---HH---HHHTHHH--HCCCCTTCCCC---
T ss_pred ccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH---HH---HHHhccc--cccCCCccccc---
Confidence 4699999998655 88999999999999999999999976543221 11 1111000 00011111122
Q ss_pred HHHHHHHHHHhcccCCCC--CCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMM--RPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~--RPsm~~v~~ 671 (755)
..+.++...|++.+|.+ ||++.||.+
T Consensus 302 -~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 302 -KEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp -HHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred -HHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 34667788999988888 999999975
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-13 Score=147.93 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=62.6
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.+|+|||++. ...++.++|||||||+++||+||+.|+........ +. ..+..+.... .+.. .....
T Consensus 305 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~--~~----~~i~~~~~~~--~~~~---~~~~~ 373 (419)
T 3i6u_A 305 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LK----DQITSGKYNF--IPEV---WAEVS 373 (419)
T ss_dssp CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC--HH----HHHHTTCCCC--CHHH---HTTSC
T ss_pred CCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH--HH----HHHhcCCCCC--Cchh---hcccC
Confidence 4799999985 47789999999999999999999999875432211 11 1112221110 0000 01123
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++..|++.+|.+||++.|+++
T Consensus 374 ~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 374 EKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHccCChhHCcCHHHHhC
Confidence 46778999999999999999999975
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-13 Score=143.10 Aligned_cols=89 Identities=18% Similarity=0.311 Sum_probs=61.2
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||.+. ...++.++|||||||+++||+||+.|+......... ..... +....... ..+
T Consensus 193 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~-~~~~~~~~---~~~--- 259 (326)
T 2x7f_A 193 PYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL------FLIPR-NPAPRLKS---KKW--- 259 (326)
T ss_dssp GGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------HHHHH-SCCCCCSC---SCS---
T ss_pred ccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHH------HHhhc-CccccCCc---ccc---
Confidence 4699999987 678999999999999999999999998765432211 11111 11111111 112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.++...|++.+|.+||++.|+++
T Consensus 260 -~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 260 -SKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp -CHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -CHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 235677889999999999999999986
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-13 Score=143.79 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=61.9
Q ss_pred ccccchhhhhcCCCCcc-ceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEK-ADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~k-sDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.+..++.+ +|||||||+++||+||+.|+....... ............ ... . +.-... ...
T Consensus 181 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~--~~~~~~~~~~~~-~~~-~--~~~~~~----s~~ 250 (361)
T 3uc3_A 181 PAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR--DYRKTIQRILSV-KYS-I--PDDIRI----SPE 250 (361)
T ss_dssp CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC--CHHHHHHHHHTT-CCC-C--CTTSCC----CHH
T ss_pred CCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH--HHHHHHHHHhcC-CCC-C--CCcCCC----CHH
Confidence 47999999988888766 899999999999999999987533211 111222222211 100 0 000112 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.|+++
T Consensus 251 ~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 251 CCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHccCChhHCcCHHHHHh
Confidence 678999999999999999999985
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-13 Score=149.39 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++.+..++.++|||||||+++||+||+.|+....... +.. .... +.. .+ +......+
T Consensus 313 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~~~---~i~~-~~~------~~---p~~~~~~~ 376 (446)
T 4ejn_A 313 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LFE---LILM-EEI------RF---PRTLGPEA 376 (446)
T ss_dssp GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH---HHHH-CCC------CC---CTTSCHHH
T ss_pred ccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---HHH---HHHh-CCC------CC---CccCCHHH
Confidence 47999999999999999999999999999999999997654322 111 1111 111 11 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|.+|| ++.|+++
T Consensus 377 ~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 377 KSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 7889999999999999 9998874
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=138.09 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=64.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++||||||++++||+||+.|+......... ... ..+. .+.+ ..+......+
T Consensus 189 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------~~~-~~~~-----~~~~-~~~~~~~~~l 255 (314)
T 3com_A 189 PFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAI------FMI-PTNP-----PPTF-RKPELWSDNF 255 (314)
T ss_dssp GGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------HHH-HHSC-----CCCC-SSGGGSCHHH
T ss_pred CCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHH------HHH-hcCC-----Cccc-CCcccCCHHH
Confidence 3599999999999999999999999999999999998765432211 111 1111 1111 0111123457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+||++.++++
T Consensus 256 ~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 256 TDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHHh
Confidence 78999999999999999999975
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-13 Score=141.84 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=67.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH-----HHhhcCccccc-cCCC------
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW-----NLHENNQSLGL-VDPT------ 636 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~-~d~~------ 636 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+......... ..+........ .+..
T Consensus 203 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
T 2eu9_A 203 RHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDEN 282 (355)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTT
T ss_pred CcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccc
Confidence 56999999999999999999999999999999999998654433221111110 00000000000 0000
Q ss_pred -------------C---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 -------------L---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 -------------l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+ ......+...+.+++..|++.+|++|||+.||++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 283 SSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp SHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred cchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 0 0112234557889999999999999999999963
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=136.74 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=62.0
Q ss_pred ccccchhhhhcCC---CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMRGH---LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~~~---~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
..|+|||.+.... .+.++|||||||+++||+||+.|+....... +.. .+..+... .+..... .
T Consensus 201 ~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~------~~~-~~~~~~~~---~~~~~~~----~ 266 (298)
T 2zv2_A 201 PAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC------LHS-KIKSQALE---FPDQPDI----A 266 (298)
T ss_dssp GGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHH-HHHHCCCC---CCSSSCC----C
T ss_pred ccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHH------HHH-HHhcccCC---CCCcccc----C
Confidence 4799999987655 4789999999999999999999987543221 111 11111111 0111122 2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.++..+|++.+|++||++.||++
T Consensus 267 ~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 267 EDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 35778899999999999999999863
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-13 Score=142.44 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=64.2
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+|+|||.+.. ..++.++|||||||+++||+||+.|+......+. ......... ....+....+ ..
T Consensus 238 ~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~------~~~~~~~~~--~~~~~~~~~~----~~ 305 (345)
T 3hko_A 238 PYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADT------ISQVLNKKL--CFENPNYNVL----SP 305 (345)
T ss_dssp GGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCCC--CTTSGGGGGS----CH
T ss_pred ccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHH------HHHHHhccc--ccCCcccccC----CH
Confidence 45999999875 7899999999999999999999999976543321 112221110 0111111112 23
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.++...|++.+|.+||++.|+++
T Consensus 306 ~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 306 LARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp HHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred HHHHHHHHHcCCChhHCCCHHHHhc
Confidence 5778899999999999999999986
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-13 Score=140.18 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=63.8
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc--Cccc------ccc--CCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN--NQSL------GLV--DPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~--~~~~------~~~--d~~l 637 (755)
.+|+|||.+.+. .++.++|||||||+++||+||+.|+......+. +.......-.. .... ... .+..
T Consensus 201 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (329)
T 3gbz_A 201 LWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQ--LFKIFEVLGLPDDTTWPGVTALPDWKQSFPKF 278 (329)
T ss_dssp CTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC
T ss_pred ccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHH--HHHHHHHhCCCchhhhhhhhhhhhhhhhhhhh
Confidence 459999999874 489999999999999999999999976543321 11111111000 0000 000 0000
Q ss_pred CCCCHH------HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDK------EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~------~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...... ....+.++...|++.+|.+|||+.|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 279 RGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp CCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 000011 1245678999999999999999999974
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-12 Score=137.01 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=60.7
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
..|+|||.+. ...++.++|||||||+++||+||+.|+....... +........ ..... +....+
T Consensus 188 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~~~~~~~~-~~~~~--~~~~~~--- 256 (318)
T 2dyl_A 188 AAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDF-----EVLTKVLQE-EPPLL--PGHMGF--- 256 (318)
T ss_dssp CTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHH-----HHHHHHHHS-CCCCC--CSSSCC---
T ss_pred ccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccH-----HHHHHHhcc-CCCCC--CccCCC---
Confidence 4699999984 5678999999999999999999999987533221 111122221 11100 110112
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|.+||++.|+++
T Consensus 257 -~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 257 -SGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp -CHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred -CHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 235778889999999999999999975
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-13 Score=142.38 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=64.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++||||||++++||+||+.|+......+. ... +..+.. .+ +......+
T Consensus 179 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~-~~~~~~------~~---~~~~~~~~ 242 (294)
T 2rku_A 179 PNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLR-IKKNEY------SI---PKHINPVA 242 (294)
T ss_dssp CSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHH-HHTTCC------CC---CTTSCHHH
T ss_pred CCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHH-HhhccC------CC---ccccCHHH
Confidence 359999999999999999999999999999999999976543221 111 111111 11 11112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||++.|+++
T Consensus 243 ~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 243 ASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp HHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHcccChhhCcCHHHHhh
Confidence 77899999999999999999985
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=145.89 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+..+ +.++||||+||+++||+||+.|++...... +. ..+..+.. .. +......
T Consensus 179 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~---~~----~~i~~~~~------~~---p~~~s~~ 242 (476)
T 2y94_A 179 PNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT---LF----KKICDGIF------YT---PQYLNPS 242 (476)
T ss_dssp STTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH---HH----HHHHTTCC------CC---CTTCCHH
T ss_pred cCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH---HH----HHHhcCCc------CC---CccCCHH
Confidence 46999999988765 789999999999999999999997643321 11 11222211 01 1111235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH--HHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA--MLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~--~L~~~ 676 (755)
+.++...|++.+|.+|||+.||++ .+...
T Consensus 243 ~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~ 273 (476)
T 2y94_A 243 VISLLKHMLQVDPMKRATIKDIREHEWFKQD 273 (476)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred HHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence 677899999999999999999986 55543
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=139.25 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=64.3
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc------cccC----CCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL------GLVD----PTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~d----~~l 637 (755)
..|+|||.+.+. .++.++|||||||+++||++|+.|+......+. +.. +.......... ...+ ...
T Consensus 176 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (346)
T 1ua2_A 176 RWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ--LTR-IFETLGTPTEEQWPDMCSLPDYVTFKSF 252 (346)
T ss_dssp CTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH-HHHHHCCCCTTTSSSTTSSTTCCCCCCC
T ss_pred ccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH--HHH-HHHHcCCCChhhhhhhccCccccccccc
Confidence 359999998764 589999999999999999999999876543221 111 11111110000 0000 000
Q ss_pred CCCC-----HHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFN-----DKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~-----~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+ ......+.++...|++.+|.+|||+.|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 253 PGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp CCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 1111 112356788999999999999999999976
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-12 Score=139.03 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=63.5
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc---Ccccc-----ccCC-CC--
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN---NQSLG-----LVDP-TL-- 637 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~---~~~~~-----~~d~-~l-- 637 (755)
+|+|||.+.+ ..++.++|||||||+++||+||+.|+......... ..+...... ..... ..+. ..
T Consensus 193 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3mi9_A 193 WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQL---ALISQLCGSITPEVWPNVDNYELYEKLELVK 269 (351)
T ss_dssp GGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHHHCCCCTTTSTTGGGCGGGTSSCCCS
T ss_pred CccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHHHhCCCChhhccccccchhhccccccc
Confidence 4999998876 56899999999999999999999999865443322 222221110 00000 0000 00
Q ss_pred -CCCC-HHH------HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 -TEFN-DKE------ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 -~~~~-~~~------~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.... .+. ...+.++...|++.+|.+|||+.|+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 270 GQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp SCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 0001 111 124678999999999999999999975
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.27 E-value=8.7e-13 Score=144.19 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=65.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++....++.++|||||||+++||+||+.|+........ .......+..+.. ..-.+....+ ...+
T Consensus 227 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---~~~~~~~i~~~~~-~~~~~~~~~~----s~~~ 298 (400)
T 1nxk_A 227 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI---SPGMKTRIRMGQY-EFPNPEWSEV----SEEV 298 (400)
T ss_dssp CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSS---CCSHHHHHHHTCC-CCCTTTTTTS----CHHH
T ss_pred CCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccc---cHHHHHHHHcCcc-cCCCcccccC----CHHH
Confidence 469999999999999999999999999999999999875432110 0001111112211 1111111222 2357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.||++
T Consensus 299 ~~li~~~L~~dP~~Rpt~~eil~ 321 (400)
T 1nxk_A 299 KMLIRNLLKTEPTQRMTITEFMN 321 (400)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHCCCChhHCcCHHHHhc
Confidence 78999999999999999999986
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.9e-13 Score=140.50 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=64.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+....++.++||||||++++||+||+.|+......+. ... +..+.. -.++.. .......+
T Consensus 182 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~-i~~~~~--~~~~~~---~~~~~~~~ 249 (321)
T 2a2a_A 182 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET------LAN-ITSVSY--DFDEEF---FSHTSELA 249 (321)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHH-HHTTCC--CCCHHH---HTTCCHHH
T ss_pred CCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHH------HHH-HHhccc--ccChhh---hcccCHHH
Confidence 469999999999999999999999999999999999976543221 111 111110 011100 00112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 250 ~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 250 KDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp HHHHHTTSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHhc
Confidence 78899999999999999999975
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=141.39 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=64.6
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---------------cccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---------------SLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~ 632 (755)
.+|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. +.. +........ ...+
T Consensus 205 ~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (371)
T 4exu_A 205 RWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ--LTQ-ILKVTGVPGTEFVQKLNDKAAKSYIQSL 281 (371)
T ss_dssp CTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHH-HHHHHCCCCHHHHTTCSCHHHHHHHHHS
T ss_pred ccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHH--HHH-HHHHhCCCcHHHHHHhhhhhhhhhhhcc
Confidence 46999999887 7899999999999999999999999976543221 111 111000000 0000
Q ss_pred cC---CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VD---PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d---~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. ..+..........+.++...|++.+|++|||+.|+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 282 PQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp CCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 00 0000011112346788999999999999999999974
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=129.83 Aligned_cols=215 Identities=7% Similarity=0.010 Sum_probs=163.6
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.++|..+ +...-..+|.++ +|+.+.|.+ .++..-+..|.+|.+|+.++|.+|.++......|. +.+|+.+.|.++
T Consensus 139 ~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~- 213 (401)
T 4fdw_A 139 KVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT- 213 (401)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-
T ss_pred EEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-
Confidence 4555554 554455677774 799999986 56655667899999999999999998766666776 689999999854
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcccc-----C
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALIT-----G 156 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-----~ 156 (755)
++..-...|.++++|+.+.+..| ++..-...|.+ .+|+.+.+. +.+......+|.++++|+.+.+.+|.+. .
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 66555677899999999999875 55344556666 789999994 4666777788999999999999988765 3
Q ss_pred CCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccC-CCCCEEEeecCcCCC
Q 004413 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS-ENLQNIDLSYNHLSG 226 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~g 226 (755)
.....|..|++|+.++|. +.++.....+|.+|.+|+.+.|..| ++......+. .+|+.|++++|.+..
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCB
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcc
Confidence 456688999999999998 4577556678889999999999665 5533222221 389999999998763
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-13 Score=141.98 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=60.0
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||++....+ +.++|||||||+++||+||+.|+.... . . .. +.. ... ..+ ...
T Consensus 212 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~---~-------~~-~~~--~~~---~~~----~~~ 269 (320)
T 3a99_A 212 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE--E---I-------IR-GQV--FFR---QRV----SSE 269 (320)
T ss_dssp GGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--H---H-------HH-CCC--CCS---SCC----CHH
T ss_pred ccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh--h---h-------hc-ccc--ccc---ccC----CHH
Confidence 46999999987766 788999999999999999999986421 0 0 01 110 111 112 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++.+|++.+|++||++.||++
T Consensus 270 ~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 270 CQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 778899999999999999999975
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=140.29 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=63.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+ + . ..+..+.. .+ +......+
T Consensus 202 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~---~-~~i~~~~~------~~---p~~~~~~~ 265 (350)
T 1rdq_E 202 PEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ---I---Y-EKIVSGKV------RF---PSHFSSDL 265 (350)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---H-HHHHHCCC------CC---CTTCCHHH
T ss_pred ccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHH---H---H-HHHHcCCC------CC---CCCCCHHH
Confidence 57999999999999999999999999999999999997644322 1 1 11122221 11 11122356
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~~ 671 (755)
.++...|++.+|.+||+ +.||.+
T Consensus 266 ~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 266 KDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 78889999999999998 777753
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-13 Score=138.81 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=60.7
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+..+ +.++||||||++++||+||+.|++...... +. ..+..+.. .+ +......
T Consensus 174 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~----~~~~~~~~------~~---~~~~~~~ 237 (276)
T 2h6d_A 174 PNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPT---LF----KKIRGGVF------YI---PEYLNRS 237 (276)
T ss_dssp ---CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHCCC------CC---CTTSCHH
T ss_pred ccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH---HH----HHhhcCcc------cC---chhcCHH
Confidence 46999999987665 689999999999999999999987643321 11 11222211 01 1112235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.||++
T Consensus 238 l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 238 VATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCCCHHHHHh
Confidence 678899999999999999999986
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-13 Score=138.54 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=64.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++||||||++++||+||+.|+......+. . ..+...... .++.. .......+
T Consensus 175 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~----~~~~~~~~~--~~~~~---~~~~~~~~ 242 (283)
T 3bhy_A 175 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQET---L----TNISAVNYD--FDEEY---FSNTSELA 242 (283)
T ss_dssp GGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH---H----HHHHTTCCC--CCHHH---HTTCCHHH
T ss_pred cCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHH---H----HHhHhcccC--Ccchh---cccCCHHH
Confidence 569999999999999999999999999999999999876543221 1 111111100 00000 01112357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|.+||++.|+++
T Consensus 243 ~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 243 KDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCCHhHCcCHHHHHh
Confidence 78999999999999999999986
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-13 Score=136.44 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=62.9
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+....+ +.++||||||++++||+||+.|++...... ..+..|.. ... .. +....+ ...
T Consensus 171 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~-----~~~--~~-~~~~~~----~~~ 237 (276)
T 2yex_A 171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC-QEYSDWKE-----KKT--YL-NPWKKI----DSA 237 (276)
T ss_dssp GGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTS-HHHHHHHT-----TCT--TS-TTGGGS----CHH
T ss_pred cCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHH-HHHHHhhh-----ccc--cc-Cchhhc----CHH
Confidence 46999999987665 789999999999999999999997644321 12222221 110 00 001112 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|.+|||+.||++
T Consensus 238 ~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 238 PLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHCCCCchhCCCHHHHhc
Confidence 677999999999999999999864
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-13 Score=145.55 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++||||+||+++||+||+.|+......+ +.. .+..+. +.+. ......+
T Consensus 182 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~~~----~i~~~~------~~~p---~~~s~~~ 245 (345)
T 1xjd_A 182 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE---LFH----SIRMDN------PFYP---RWLEKEA 245 (345)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHCC------CCCC---TTSCHHH
T ss_pred cccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHH---HHH----HHHhCC------CCCC---cccCHHH
Confidence 46999999999999999999999999999999999997654322 111 111111 1111 1122356
Q ss_pred HHHHHHhcccCCCCCCCHH-HHH
Q 004413 649 IGVALLCTQASPMMRPPMS-RVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~-~v~ 670 (755)
.++...|++.+|.+||++. ||.
T Consensus 246 ~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 246 KDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHHhcCCHhHcCCChHHHH
Confidence 6788999999999999997 553
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-13 Score=140.80 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=63.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+......+. ... +..+.. .+ +......+
T Consensus 205 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~-~~~~~~------~~---~~~~~~~~ 268 (335)
T 2owb_A 205 PNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLR-IKKNEY------SI---PKHINPVA 268 (335)
T ss_dssp CSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHH-HHHTCC------CC---CTTSCHHH
T ss_pred ccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH------HHH-HhcCCC------CC---CccCCHHH
Confidence 359999999999999999999999999999999999976543221 111 111111 11 11112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++||++.|+++
T Consensus 269 ~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 269 ASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp HHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67889999999999999999985
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-13 Score=144.28 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=65.4
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHH-------hh--cCccccccCCCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNL-------HE--NNQSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~-------~~--~~~~~~~~d~~l~ 638 (755)
..|+|||.+.+. .++.++|||||||+++||+||+.|+......+. +...+... +. .....+..-+.+.
T Consensus 205 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~--l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 282 (394)
T 4e7w_A 205 RYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ--LVEIIKVLGTPSREQIKTMNPNYMEHKFPQIR 282 (394)
T ss_dssp GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCC
T ss_pred cCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhCCCCHHHHHhhChhhhhhcccccc
Confidence 359999998764 599999999999999999999999986543321 22221110 00 0000000011111
Q ss_pred C------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 E------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. ++......+.++...|++.+|.+|||+.|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 283 PHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp CCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 1 11112346788999999999999999999985
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.5e-13 Score=142.09 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=63.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
..|+|||.+....++.++|||||||+++||+||+.|+..... .+. ..+..+... .++.. ..+ ...
T Consensus 197 ~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~----~~i~~~~~~--~~~~~~~~~----s~~ 262 (351)
T 3c0i_A 197 PHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE----RLF----EGIIKGKYK--MNPRQWSHI----SES 262 (351)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH----HHH----HHHHHTCCC--CCHHHHTTS----CHH
T ss_pred cCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH----HHH----HHHHcCCCC--CCccccccC----CHH
Confidence 469999999999999999999999999999999999875321 111 111112110 01000 111 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++|||+.|+++
T Consensus 263 ~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 263 AKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHCCCChhHCcCHHHHhc
Confidence 678899999999999999999985
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-13 Score=145.51 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=60.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||.+.+..++.++||||+||+++||+||+.|+......+ +. .. +..+.. .. +......+
T Consensus 188 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~---~~---~~-i~~~~~------~~---p~~~~~~~ 251 (353)
T 3txo_A 188 PDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD---LF---EA-ILNDEV------VY---PTWLHEDA 251 (353)
T ss_dssp GGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HH-HHHCCC------CC---CTTSCHHH
T ss_pred cCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH---HH---HH-HHcCCC------CC---CCCCCHHH
Confidence 46999999999999999999999999999999999997654322 11 11 111111 11 11122346
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.+|.+||++
T Consensus 252 ~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 252 TGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHHHHHHTCSSGGGSTTS
T ss_pred HHHHHHHhhhCHHHccCC
Confidence 678899999999999998
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-13 Score=138.24 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=62.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+ .++.++||||||++++||+||+.|+......+. ...+.++... ........ ....+
T Consensus 172 ~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~----~~~~~ 238 (277)
T 3f3z_A 172 PYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEV-------MLKIREGTFT-FPEKDWLN----VSPQA 238 (277)
T ss_dssp TTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-------HHHHHHCCCC-CCHHHHTT----SCHHH
T ss_pred CCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHH-------HHHHHhCCCC-CCchhhhc----CCHHH
Confidence 46999998764 599999999999999999999999976543221 1111222110 00000001 13467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 239 ESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 78999999999999999999974
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-13 Score=143.66 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=53.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++....++.++||||||++++||+||+.|+....... ...........+.. ..-.+.... ....+
T Consensus 193 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~ 264 (336)
T 3fhr_A 193 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA---ISPGMKRRIRLGQY-GFPNPEWSE----VSEDA 264 (336)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------------CCCTTTSTT----CCHHH
T ss_pred cCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh---hhhhHHHhhhcccc-ccCchhhcc----CCHHH
Confidence 46999999999999999999999999999999999986533211 10001111111100 011111112 23457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH--HHhcc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA--MLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~--~L~~~ 676 (755)
.+++..|++.+|.+|||+.|+++ .+...
T Consensus 265 ~~li~~~L~~dP~~Rpt~~ell~hp~~~~~ 294 (336)
T 3fhr_A 265 KQLIRLLLKTDPTERLTITQFMNHPWINQS 294 (336)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHHSHHHHTG
T ss_pred HHHHHHHCCCChhHCcCHHHHhcCcccccc
Confidence 78899999999999999999997 55543
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=140.27 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=65.5
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC------------------cc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN------------------QS 629 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~------------------~~ 629 (755)
.+|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+....... .+
T Consensus 187 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (353)
T 3coi_A 187 RWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ---LTQILKVTGVPGTEFVQKLNDKAAKSYIQSL 263 (353)
T ss_dssp BCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHH---HHHHHHHHCBCCHHHHTTCSCHHHHHHHHTS
T ss_pred cCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCCHHHHHHHhhHHHHHHHHhC
Confidence 46999999887 7899999999999999999999999976543221 11111110000 00
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 ~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+.+..........+.++...|++.+|++|||+.|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 264 PQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp CBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred cCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000011111122233456778999999999999999999874
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-13 Score=144.31 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=59.4
Q ss_pred ccccchhhhh-------cCCCCccceeeeehheeehhhhCCcCCCCCchhhHH-HHHHHHHHHhhcCccccccCCCCCCC
Q 004413 569 HGYLAPEYAM-------RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKI-YLLEWAWNLHENNQSLGLVDPTLTEF 640 (755)
Q Consensus 569 ~gy~aPE~~~-------~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~d~~l~~~ 640 (755)
.+|||||++. .+.++.++|||||||+++||+||+.|+......+.. .+..+... .--|.+.
T Consensus 227 ~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~---------~~~p~~~-- 295 (412)
T 2vd5_A 227 PDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEH---------LSLPLVD-- 295 (412)
T ss_dssp GGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHH---------CCCC-----
T ss_pred cCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccC---------cCCCccc--
Confidence 4699999987 467999999999999999999999999765433211 11111000 0011111
Q ss_pred CHHHHHHHHHHHHHhcccCCCCC---CCHHHHHH
Q 004413 641 NDKEALRVIGVALLCTQASPMMR---PPMSRVVA 671 (755)
Q Consensus 641 ~~~~~~~~~~l~~~C~~~~p~~R---Psm~~v~~ 671 (755)
......+.++...|++ +|.+| |++.||.+
T Consensus 296 -~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 296 -EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp --CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred -cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 1112356678889998 89988 68888864
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-12 Score=137.56 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||.+.+..++.++||||||++++||+||+.|+....... +. ..+.++.. ....+..... ...+
T Consensus 171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~----~~i~~~~~-~~~~~~~~~~----~~~~ 238 (304)
T 2jam_A 171 PGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK---LF----EKIKEGYY-EFESPFWDDI----SESA 238 (304)
T ss_dssp CCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HH----HHHHHCCC-CCCTTTTTTS----CHHH
T ss_pred CCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH---HH----HHHHcCCC-CCCccccccC----CHHH
Confidence 56999999999999999999999999999999999987543321 11 11222211 1111111222 2457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++||++.|+++
T Consensus 239 ~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 239 KDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 78999999999999999999985
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-12 Score=137.49 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=65.2
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc-----------C-------cc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN-----------N-------QS 629 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~-----------~-------~~ 629 (755)
..|+|||.+.+ ..++.++||||+||+++||+||+.|+......+.. ..+...... . .+
T Consensus 189 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 265 (367)
T 1cm8_A 189 RWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQL---KEIMKVTGTPPAEFVQRLQSDEAKNYMKGL 265 (367)
T ss_dssp GGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH---HHHHHHHCCCCHHHHHTCSCHHHHHHHHHS
T ss_pred CCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHHHhcCCCCHHHHHHhhhHHHHHHHHhC
Confidence 46999999887 78999999999999999999999999765432211 111110000 0 00
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 ~~~~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.-...+..........+.++...|++.+|.+|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 266 PELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 001111111111222345778889999999999999999986
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-12 Score=152.96 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=60.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|||||++....++.++|||||||+|+||+||+.|+......+ + ..... ++.. . ++......+
T Consensus 506 ~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~---~---~~~i~-~~~~------~---~p~~~s~~~ 569 (674)
T 3pfq_A 506 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE---L---FQSIM-EHNV------A---YPKSMSKEA 569 (674)
T ss_dssp SSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHHH-SSCC------C---CCTTSCHHH
T ss_pred CcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH---H---HHHHH-hCCC------C---CCccCCHHH
Confidence 56999999999999999999999999999999999997654322 1 11111 2111 1 112223456
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.+|.+||++
T Consensus 570 ~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 570 VAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHHHHHSCSSSTTCTTC
T ss_pred HHHHHHHccCCHHHCCCC
Confidence 778899999999999998
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-12 Score=139.23 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=62.5
Q ss_pred ccccchhhhhc------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 569 HGYLAPEYAMR------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
.+|+|||++.+ ..++.++|||||||+++||+||+.|+....... .... +..+... ...+.....
T Consensus 263 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~---~~~~----i~~~~~~-~~~~~~~~~-- 332 (365)
T 2y7j_A 263 PGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQIL---MLRM----IMEGQYQ-FSSPEWDDR-- 332 (365)
T ss_dssp GGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHH----HHHTCCC-CCHHHHSSS--
T ss_pred CCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHH---HHHH----HHhCCCC-CCCcccccC--
Confidence 46999999864 368999999999999999999999987643321 1111 1112111 000000111
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|++||++.|+++
T Consensus 333 --~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 333 --SSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp --CHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred --CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 235778999999999999999999975
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-13 Score=144.42 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=63.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+......+ +. ..... +... +.+ .. ...+
T Consensus 203 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~---~~---~~i~~-~~~~--~~~---~~----~~~~ 266 (373)
T 2r5t_A 203 PEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE---MY---DNILN-KPLQ--LKP---NI----TNSA 266 (373)
T ss_dssp CCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH---HH---HHHHH-SCCC--CCS---SS----CHHH
T ss_pred ccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH---HH---HHHHh-cccC--CCC---CC----CHHH
Confidence 46999999999999999999999999999999999997654322 11 11111 1110 111 12 2356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
.++...|++.+|.+||++.+.+..+.
T Consensus 267 ~~li~~lL~~dp~~R~~~~~~~~~i~ 292 (373)
T 2r5t_A 267 RHLLEGLLQKDRTKRLGAKDDFMEIK 292 (373)
T ss_dssp HHHHHHHTCSSGGGSTTTTTTHHHHH
T ss_pred HHHHHHHcccCHHhCCCCCCCHHHHh
Confidence 77889999999999999865554443
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-13 Score=142.32 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=59.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++|||||||+++||+||+.|+......+ +. ..... +.. .+ +......+
T Consensus 185 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~---~~---~~i~~-~~~------~~---p~~~s~~~ 248 (353)
T 2i0e_A 185 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE---LF---QSIME-HNV------AY---PKSMSKEA 248 (353)
T ss_dssp GGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHHHH-CCC------CC---CTTSCHHH
T ss_pred ccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHH---HH---HHHHh-CCC------CC---CCCCCHHH
Confidence 46999999999999999999999999999999999997644322 11 11111 111 11 11122356
Q ss_pred HHHHHHhcccCCCCCCCH
Q 004413 649 IGVALLCTQASPMMRPPM 666 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm 666 (755)
.++...|++.+|.+||++
T Consensus 249 ~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 249 VAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHHHTCSCTTSCTTC
T ss_pred HHHHHHHhhcCHHHcCCC
Confidence 778899999999999964
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-10 Score=126.31 Aligned_cols=224 Identities=8% Similarity=0.014 Sum_probs=166.2
Q ss_pred CcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchh
Q 004413 10 FSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDF 89 (755)
Q Consensus 10 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 89 (755)
++..-...|.++ +|+.+.|..+ ++..-..+|.++ +|+.+.|.+ .+....+..|.+|.+|+.+++.+|+++......
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 443334567775 7999999877 664556678875 799999985 666666678999999999999999998544445
Q ss_pred hcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCC
Q 004413 90 IGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQ 169 (755)
Q Consensus 90 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 169 (755)
|. ..+|+.+.|..+ ++......|.++++|+.+++..+ +......+|.+ .+|+.+.|. +.++..-...|..|++|+
T Consensus 200 F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 200 FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELA 274 (401)
T ss_dssp TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCC
T ss_pred Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCC
Confidence 55 689999999855 66556678999999999999863 55666667777 789999995 556656678899999999
Q ss_pred EEeCCCCCCC-----CCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccc-cc--cccccc
Q 004413 170 TLDLSFNNLT-----GQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSW-VT--SNLQMN 239 (755)
Q Consensus 170 ~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~-~~--~~~~l~ 239 (755)
.+++.+|.+. ......|.+|++|+.++|.+ .++......+ ..+|+.|+|..| ++ .|+.. +. ....+.
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~~L~~l~ 351 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNTGIKEVK 351 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSSCCCEEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCCCCCEEE
Confidence 9999998775 34557889999999999994 4663333322 378999999665 54 33332 22 233466
Q ss_pred cccccc
Q 004413 240 LVANNF 245 (755)
Q Consensus 240 l~~n~~ 245 (755)
+.+|..
T Consensus 352 l~~n~~ 357 (401)
T 4fdw_A 352 VEGTTP 357 (401)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 777654
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=142.79 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=61.3
Q ss_pred cccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHh----h------------------
Q 004413 570 GYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLH----E------------------ 625 (755)
Q Consensus 570 gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~----~------------------ 625 (755)
.|+|||.+.. ..++.++|||||||+++||+||+.|+......... ........ .
T Consensus 200 ~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (389)
T 3gni_B 200 PWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQML--LEKLNGTVPCLLDTSTIPAEELTMSPSRSVA 277 (389)
T ss_dssp GGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHH--HHC----------------------------
T ss_pred cccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHhcCCCCcccccccccccccccccccccc
Confidence 3999999987 68999999999999999999999998754332211 00000000 0
Q ss_pred cCccccccC---CCC-------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 626 NNQSLGLVD---PTL-------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 626 ~~~~~~~~d---~~l-------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+.+. +.. ...+......+.+++..|++.+|++|||+.|+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~ 333 (389)
T 3gni_B 278 NSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333 (389)
T ss_dssp ----------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence 000000000 000 0011122345788999999999999999999974
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-12 Score=136.48 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=63.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+..++.++||||+||+++||+||+.|+......+ . ...... +.. .+ +......+
T Consensus 167 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~---~~~i~~-~~~------~~---p~~~~~~~ 230 (318)
T 1fot_A 167 PDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK---T---YEKILN-AEL------RF---PPFFNEDV 230 (318)
T ss_dssp TTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---H---HHHHHH-CCC------CC---CTTSCHHH
T ss_pred ccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH---H---HHHHHh-CCC------CC---CCCCCHHH
Confidence 57999999999999999999999999999999999997643322 1 111121 111 11 11112356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|.+|| ++.||.+
T Consensus 231 ~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 231 KDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 7788899999999999 7888763
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-12 Score=140.10 Aligned_cols=96 Identities=25% Similarity=0.312 Sum_probs=71.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||++.+..++.++|||||||+++||+| |+.|+......+. +...+..+.... . +......
T Consensus 259 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~------~~~~~~~~~~~~-----~---~~~~~~~ 324 (359)
T 3vhe_A 259 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE------FCRRLKEGTRMR-----A---PDYTTPE 324 (359)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH------HHHHHHHTCCCC-----C---CTTCCHH
T ss_pred ceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH------HHHHHHcCCCCC-----C---CCCCCHH
Confidence 57999999999999999999999999999999 9999875443221 112222221111 1 1112335
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..|++.+|.+||||.||++.|+....
T Consensus 325 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 355 (359)
T 3vhe_A 325 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 355 (359)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999987543
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-12 Score=139.40 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=60.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh--HHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME--KIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|++...... .....++.......+.. .+ +.....
T Consensus 174 ~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~------~~---p~~~s~ 244 (345)
T 3a8x_A 174 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQI------RI---PRSLSV 244 (345)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCC------CC---CTTSCH
T ss_pred ccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCC------CC---CCCCCH
Confidence 46999999999999999999999999999999999986422111 01111222222222221 11 112223
Q ss_pred HHHHHHHHhcccCCCCCCCH
Q 004413 647 RVIGVALLCTQASPMMRPPM 666 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm 666 (755)
.+.++...|++.+|.+||++
T Consensus 245 ~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 245 KAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp HHHHHHHHHTCSSTTTSTTC
T ss_pred HHHHHHHHHhcCCHhHCCCC
Confidence 56778899999999999995
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.5e-13 Score=137.87 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=60.7
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+... .++.++|||||||+++||++|+.+...... +..+..+... .+ +......
T Consensus 194 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~----------~~~~~~~~~~-----~~---~~~~~~~ 255 (289)
T 1x8b_A 194 SRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQ----------WHEIRQGRLP-----RI---PQVLSQE 255 (289)
T ss_dssp GGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHH----------HHHHHTTCCC-----CC---SSCCCHH
T ss_pred ccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhH----------HHHHHcCCCC-----CC---CcccCHH
Confidence 569999999765 677899999999999999999987543211 1112222221 11 1112345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++|||+.|+++
T Consensus 256 ~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 256 FTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhCCCcccCCCHHHHhh
Confidence 778899999999999999999874
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-13 Score=144.66 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=36.6
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCch
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLD 610 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~ 610 (755)
.|+|||.+.+ ..++.++|||||||+++||+||+.|+.....
T Consensus 195 ~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~ 236 (388)
T 3oz6_A 195 WYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSST 236 (388)
T ss_dssp GGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred CcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 3999999876 6899999999999999999999999976543
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-12 Score=140.78 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred cccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc----ccccc-----------
Q 004413 570 GYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ----SLGLV----------- 633 (755)
Q Consensus 570 gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~----------- 633 (755)
.|+|||.+.. ..++.++|||||||+++||++|+.|+......+. ...+........ ...+.
T Consensus 187 ~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (353)
T 2b9h_A 187 WYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQ---LLLIFGIIGTPHSDNDLRCIESPRAREYIKSL 263 (353)
T ss_dssp GGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTS
T ss_pred cccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHH---HHHHHHHhCCCchhccccccccchhhHHhhcc
Confidence 4999998764 7899999999999999999999999976543221 111111111000 00000
Q ss_pred ----CCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 634 ----DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 634 ----d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+..........+.+++..|++.+|.+|||+.|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 264 PMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000000112345778999999999999999999975
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-12 Score=141.75 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=63.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---------------cccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---------------SLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~ 632 (755)
.+|+|||.+.. ..++.++|||||||+++||+||+.|+......+... .+........ ....
T Consensus 195 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (364)
T 3qyz_A 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLN---HILGILGSPSQEDLNCIINLKARNYLLSL 271 (364)
T ss_dssp GGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHH---HHHHHHCSCCHHHHHTCCCHHHHHHHHTS
T ss_pred cCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHH---HHHHHhCCCCHHHHHHhhhhhHHHHHHhc
Confidence 35999998764 458999999999999999999999997654433211 1111100000 0000
Q ss_pred cCCCC---CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTL---TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l---~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.- ..........+.++...|++.+|++|||+.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 272 PHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00000 0000112245778999999999999999999974
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-12 Score=143.91 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=63.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|+|||.+.+ .++.++||||+||+++||+||+.|+......+ +.. .+..+... .-.+..... ...+
T Consensus 187 ~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~----~i~~~~~~-~~~~~~~~~----s~~~ 253 (486)
T 3mwu_A 187 AYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---ILK----RVETGKYA-FDLPQWRTI----SDDA 253 (486)
T ss_dssp GGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHTCCC-SCSGGGGGS----CHHH
T ss_pred CCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH----HHHhCCCC-CCCcccCCC----CHHH
Confidence 46999998864 69999999999999999999999997654322 111 12222211 000111112 2356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+|||+.|+++
T Consensus 254 ~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 254 KDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHhc
Confidence 78899999999999999999986
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-12 Score=137.05 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=64.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc---cccc--------cC--
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ---SLGL--------VD-- 634 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~~--------~d-- 634 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+......+. ...+.+...... ...+ +.
T Consensus 193 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~ 269 (367)
T 2fst_X 193 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ---LKLILRLVGTPGAELLKKISSESARNYIQSL 269 (367)
T ss_dssp CTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCHHHHTTCCCHHHHHHHHTS
T ss_pred cCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCCHHHHHHhhhHHHHHHHhcc
Confidence 46999999877 7899999999999999999999999976543221 111111110000 0000 00
Q ss_pred CCCCCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PTLTEFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~l~~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.....+. .....+.++...|++.+|.+|||+.|+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 270 TQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp CCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 00001111 11235678999999999999999999975
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-12 Score=139.92 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=60.7
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
.+|+|||++.+ ..++.++|||||||+++||+||+.|+........ ...+....... .+.. +.+...
T Consensus 224 ~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~--~~~~~~~~~~~-------~~~~---~~~~~~ 291 (355)
T 1vzo_A 224 IEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS--QAEISRRILKS-------EPPY---PQEMSA 291 (355)
T ss_dssp CTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC--HHHHHHHHHHC-------CCCC---CTTSCH
T ss_pred cCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch--HHHHHHHHhcc-------CCCC---CcccCH
Confidence 46999999985 4578999999999999999999999864322111 11222222211 1111 122234
Q ss_pred HHHHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.+.+++..|++.+|.+|| ++.|+++
T Consensus 292 ~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 292 LAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp HHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred HHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 567889999999999999 8888875
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-12 Score=133.87 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=62.9
Q ss_pred cccchhhhhc-----CCCCccceeeeehheeehhhhCCcCCCCCchhhH--------HHHHHHHHHHhhcCccccccCCC
Q 004413 570 GYLAPEYAMR-----GHLTEKADVFSFGVAALEIISGRANSDNSLDMEK--------IYLLEWAWNLHENNQSLGLVDPT 636 (755)
Q Consensus 570 gy~aPE~~~~-----~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~d~~ 636 (755)
.|+|||.+.. ..++.++|||||||+++||+||+.|+......+. .....-....+..+... .-++.
T Consensus 186 ~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 264 (316)
T 2ac3_A 186 EYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYE-FPDKD 264 (316)
T ss_dssp GGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCC-CCHHH
T ss_pred CccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcc-cCchh
Confidence 5999999875 5689999999999999999999999875432110 00001111122222110 00000
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 637 LTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 637 l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
... ....+.++...|++.+|.+|||+.|+++
T Consensus 265 ~~~----~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 265 WAH----ISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HTT----SCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ccc----CCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 011 1235778999999999999999999986
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-12 Score=140.85 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=65.2
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHh---------hcCccccccCCCCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLH---------ENNQSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~d~~l~ 638 (755)
..|+|||.+.+. .++.++|||||||+++||+||+.|+......+. +...+...- ......+..-+.+.
T Consensus 205 ~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 282 (383)
T 3eb0_A 205 RFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQ--LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLK 282 (383)
T ss_dssp SSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCC
T ss_pred CCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHH--HHHHHHHhCCCCHHHHHHhCcccccccCCccC
Confidence 459999988764 599999999999999999999999986543321 222111100 00001111111111
Q ss_pred C------CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 E------FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~------~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
. .+......+.+++..|++.+|.+|||+.|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 283 AKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp CCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 12223345788999999999999999999974
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-12 Score=142.97 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=63.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+. +.++.++||||+||+++||+||+.|+......+ +. ..+..+... ...+.....+ ..+
T Consensus 202 ~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~----~~i~~~~~~-~~~~~~~~~s----~~~ 268 (494)
T 3lij_A 202 AYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE---IL----RKVEKGKYT-FDSPEWKNVS----EGA 268 (494)
T ss_dssp TTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHTCCC-CCSGGGTTSC----HHH
T ss_pred cCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH---HH----HHHHhCCCC-CCchhcccCC----HHH
Confidence 4699999876 679999999999999999999999997654322 11 112222111 1111111222 356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+|||+.|+++
T Consensus 269 ~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 269 KDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHCCCChhhCccHHHHhc
Confidence 77899999999999999999984
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-12 Score=145.75 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=63.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|+|||.+.+ .++.++||||+||+++||+||+.|+......+ +.. .+..+... .-.+.... ....+
T Consensus 192 ~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~----~i~~~~~~-~~~~~~~~----~s~~~ 258 (484)
T 3nyv_A 192 AYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD---ILK----KVEKGKYT-FELPQWKK----VSESA 258 (484)
T ss_dssp GGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----HHHHCCCC-CCSGGGGG----SCHHH
T ss_pred ccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH---HHH----HHHcCCCC-CCCccccc----CCHHH
Confidence 46999998865 79999999999999999999999997654322 222 12222211 00011111 22356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+|||+.|+++
T Consensus 259 ~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 259 KDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHCCCChhHCcCHHHHhh
Confidence 78899999999999999999985
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-12 Score=138.99 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+....++.++|||||||+++||+||+.|+......+ . ...... +.. .+ +......+
T Consensus 185 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~---~~~i~~-~~~------~~---p~~~~~~~ 248 (327)
T 3a62_A 185 IEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK---T---IDKILK-CKL------NL---PPYLTQEA 248 (327)
T ss_dssp CTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---H---HHHHHH-TCC------CC---CTTSCHHH
T ss_pred cCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH---H---HHHHHh-CCC------CC---CCCCCHHH
Confidence 46999999999999999999999999999999999997654322 1 111111 111 11 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.+|.+|| ++.|+++
T Consensus 249 ~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 249 RDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 7888999999999999 5666654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-13 Score=146.41 Aligned_cols=180 Identities=17% Similarity=0.134 Sum_probs=105.6
Q ss_pred ccCcEEEccccCCCCCCchhhhcC-----CCCCEEEccCCCCCCCcchhh-cCCCCCcEEEccCCCCCCCCCccc-----
Q 004413 46 AKLEQLYLNSWGAGGEIPSTYAKL-----RNMQTLWASDAPFTGKIPDFI-GNWTKLKSLRFQGNSFQGPIPSSL----- 114 (755)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l----- 114 (755)
++|++|+|++|.++......+..+ .+|++|+|++|.++......+ ..+.+|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654333332222 566777777776653322222 234566777777776653322222
Q ss_pred cCCCCCCeeecCCCCCCCCChh----hhcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCC----C
Q 004413 115 SKLASLDSLRISDIYNVSSSLD----FVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQ----I 182 (755)
Q Consensus 115 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 182 (755)
...++|++|+|++|.+...... .+..+++|++|+|++|.+++. ++..+..+++|+.|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356777777777765543322 346677788888888887643 345566778899999999988753 3
Q ss_pred cccccCCCCCCEEEccCCcCCCCCCccc----CC---CCCEEE--eecCcCC
Q 004413 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQK----SE---NLQNID--LSYNHLS 225 (755)
Q Consensus 183 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~---~L~~L~--Ls~N~l~ 225 (755)
...+..+++|+.|+|++|.|+....... .. .|+.+. +..|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445567889999999998874322211 11 266666 6666654
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-12 Score=138.18 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
.+|+|||.+. ...++.++|||||||+++||+||+.|+....... .+... +..+... ..+.. .....
T Consensus 180 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~----~~~~~~~--~~~~~---~~~~~ 248 (322)
T 2ycf_A 180 PTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV--SLKDQ----ITSGKYN--FIPEV---WAEVS 248 (322)
T ss_dssp CTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS--CHHHH----HHHTCCC--CCHHH---HTTSC
T ss_pred cCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH--HHHHH----HHhCccc--cCchh---hhhcC
Confidence 4799999874 5778999999999999999999999987543221 11111 1112111 00000 01123
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++..|++.+|++||++.|+++
T Consensus 249 ~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 249 EKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 46778999999999999999999874
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=133.59 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=63.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||.+.+ .++.++||||||++++||+||+.|+......+ +. ..+..+....- .+....+ ...+
T Consensus 187 ~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~----~~~~~~~~~~~-~~~~~~~----~~~~ 253 (287)
T 2wei_A 187 AYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---IL----KRVETGKYAFD-LPQWRTI----SDDA 253 (287)
T ss_dssp HTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHCCCCCC-SGGGTTS----CHHH
T ss_pred ccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH---HH----HHHHcCCCCCC-chhhhhc----CHHH
Confidence 35999998764 59999999999999999999999987654322 11 11222221100 0111122 2357
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 254 ~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 254 KDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHcccChhhCcCHHHHhc
Confidence 78999999999999999999986
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-12 Score=135.69 Aligned_cols=81 Identities=17% Similarity=0.330 Sum_probs=59.8
Q ss_pred ccccchhhhhcCCCC-ccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLT-EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t-~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||++....+. .++||||||++++||+||+.|+.... .+ .. .. ..+ +......
T Consensus 202 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~-------~~-~~------~~~---~~~~~~~ 259 (312)
T 2iwi_A 202 RVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-----EI-------LE-AE------LHF---PAHVSPD 259 (312)
T ss_dssp TTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----HH-------HH-TC------CCC---CTTSCHH
T ss_pred ccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-----HH-------hh-hc------cCC---cccCCHH
Confidence 469999999877764 59999999999999999999986421 00 00 10 001 1112235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|++||++.||++
T Consensus 260 ~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 260 CCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHccCChhhCcCHHHHhc
Confidence 678899999999999999999986
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.2e-13 Score=139.46 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=64.1
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc----------Cccc-----cc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN----------NQSL-----GL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~----------~~~~-----~~ 632 (755)
..|+|||.+.. ..++.++|||||||+++||+||+.|+......+... .+...... ..+. ..
T Consensus 188 ~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (320)
T 2i6l_A 188 KWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQ---LILESIPVVHEEDRQELLSVIPVYIRNDM 264 (320)
T ss_dssp CTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH---HHHHHSCCCCHHHHHHHHTTSCHHHHHHT
T ss_pred ccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHH---HHHHhcCCCchhhhhhhhhcCcccccccc
Confidence 34999998875 789999999999999999999999998654332111 11100000 0000 00
Q ss_pred cCCCC--CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTL--TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l--~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.. ..........+.+++..|++.+|++|||+.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 265 TEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp TSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 00100 0001112346778999999999999999999975
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-12 Score=135.18 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=71.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|+|||.+.++.++.++|||||||+++||+| |+.|+........ + ......+.. +.. +......
T Consensus 238 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~--~----~~~~~~~~~-----~~~---~~~~~~~ 303 (344)
T 1rjb_A 238 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN--F----YKLIQNGFK-----MDQ---PFYATEE 303 (344)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--H----HHHHHTTCC-----CCC---CTTCCHH
T ss_pred cCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHH--H----HHHHhcCCC-----CCC---CCCCCHH
Confidence 56999999999999999999999999999999 9999876543221 1 122222211 111 1122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++..||+.+|.+||++.||++.|+.....
T Consensus 304 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 304 IYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 77899999999999999999999999876554
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-12 Score=138.75 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNS 608 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~ 608 (755)
..|+|||.+.+ ..++.++|||||||+++||+||+.|+...
T Consensus 199 ~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 199 FWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred CcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 35999999887 45999999999999999999999998654
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-12 Score=146.11 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=62.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh-HHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME-KIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
.+|||||++.+..++.++|||||||+++||+||+.|+....... ...+.. ...... ..+ +......
T Consensus 349 ~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~----~i~~~~------~~~---p~~~s~~ 415 (576)
T 2acx_A 349 VGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVER----LVKEVP------EEY---SERFSPQ 415 (576)
T ss_dssp GGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHH----HHHHCC------CCC---CTTSCHH
T ss_pred ccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHH----Hhhccc------ccC---CccCCHH
Confidence 46999999999999999999999999999999999997643211 111111 111111 111 1112235
Q ss_pred HHHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 648 VIGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
+.+++..|++.+|.+|| ++.||.+
T Consensus 416 ~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 416 ARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp HHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred HHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 67788999999999999 6777763
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-12 Score=132.35 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=63.5
Q ss_pred ccccchhhhh------cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 569 HGYLAPEYAM------RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~------~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
..|+|||.+. ...++.++||||||++++||+||+.|+....... .. ..+..+... ...+...
T Consensus 187 ~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~----~~~~~~~~~-~~~~~~~---- 254 (298)
T 1phk_A 187 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML---ML----RMIMSGNYQ-FGSPEWD---- 254 (298)
T ss_dssp GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHTCCC-CCTTTGG----
T ss_pred ccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH---HH----HHHhcCCcc-cCccccc----
Confidence 4699999885 4678999999999999999999999987644322 11 111112111 1111111
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.....+.++...|++.+|.+||++.|+++
T Consensus 255 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 255 DYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp GSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 22346778999999999999999999874
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=126.99 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=47.4
Q ss_pred EEccCc-cCCCCCcccccCCccCcEEEccc-cCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 27 LSFGNN-NFSGTLPPEIGNLAKLEQLYLNS-WGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 27 L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
++++++ .++ .+|. |..+.+|++|+|++ |.+.+..+..|..|++|++|+|++|+|++..|..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 3444 44444555555543 4444444444555555555555555555444444455555555555555
Q ss_pred CCCCCCCccccCCCCCCeeecCCCCC
Q 004413 105 SFQGPIPSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 105 ~l~~~~p~~l~~l~~L~~L~l~~n~~ 130 (755)
+|++..+..+..+. |+.|+|.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55433333333333 55555555443
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-12 Score=142.81 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=64.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCC-CCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDP-TLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~ 647 (755)
+.|+|||.+. +.++.++||||+||+++||+||+.|+......+ +. ..+..+... .+. ..... ...
T Consensus 212 ~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~----~~i~~~~~~--~~~~~~~~~----s~~ 277 (504)
T 3q5i_A 212 AYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD---II----KKVEKGKYY--FDFNDWKNI----SDE 277 (504)
T ss_dssp TTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHCCCC--CCHHHHTTS----CHH
T ss_pred cCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH---HH----HHHHcCCCC--CCccccCCC----CHH
Confidence 4699999876 579999999999999999999999997654322 11 112222211 000 00111 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH--HHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA--MLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~--~L~~ 675 (755)
+.++...|++.+|.+|||+.|+++ ++..
T Consensus 278 ~~~li~~~L~~dp~~R~t~~e~l~h~~~~~ 307 (504)
T 3q5i_A 278 AKELIKLMLTYDYNKRCTAEEALNSRWIKK 307 (504)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred HHHHHHHHcCCChhHCCCHHHHhcCHhhhh
Confidence 778899999999999999999985 4443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-12 Score=141.07 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=120.9
Q ss_pred CCCCCEEEccCCCCCCCcchhhcC-----CCCCcEEEccCCCCCCCCCccc-cCCCCCCeeecCCCCCCCCChhhh----
Q 004413 69 LRNMQTLWASDAPFTGKIPDFIGN-----WTKLKSLRFQGNSFQGPIPSSL-SKLASLDSLRISDIYNVSSSLDFV---- 138 (755)
Q Consensus 69 l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~~~~~~~~~l---- 138 (755)
+++|+.|+|++|.++......+.. ..+|++|+|++|.++......+ ..+++|+.|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 478999999999998544444332 3799999999999974333333 235689999999998876555444
Q ss_pred -cCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCCcc
Q 004413 139 -MSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPTQ 209 (755)
Q Consensus 139 -~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 209 (755)
...++|+.|+|++|.++.. ++..+..+++|++|+|++|.+++. +...+..+++|+.|+|++|.|+......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568899999999998753 445557889999999999999853 3566778889999999999998532221
Q ss_pred ------cCCCCCEEEeecCcCCCC
Q 004413 210 ------KSENLQNIDLSYNHLSGP 227 (755)
Q Consensus 210 ------~~~~L~~L~Ls~N~l~g~ 227 (755)
..++|++|||++|.|+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 237899999999999743
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-12 Score=137.14 Aligned_cols=90 Identities=23% Similarity=0.273 Sum_probs=61.3
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 644 (755)
.+|+|||.+. ...++.++|||||||+++||+| |+.|+........ ........ .... ......
T Consensus 190 ~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~-------~~~~~~~~-~~~~-----~~~~~~ 256 (432)
T 3p23_A 190 EGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA-------NILLGACS-LDCL-----HPEKHE 256 (432)
T ss_dssp TTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH-------HHHTTCCC-CTTS-----CTTCHH
T ss_pred cCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH-------HHHhccCC-cccc-----Cccccc
Confidence 5799999987 5678899999999999999999 8888854332211 11111110 1111 111233
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 645 ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 645 ~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.+++..|++.+|.+|||+.||++
T Consensus 257 ~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 257 DVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp HHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 445678999999999999999999983
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.4e-12 Score=134.07 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=73.3
Q ss_pred ccccccchhhhhcC------CCCccceeeeehheeehhhhC----------CcCCCCCchhhHHHHHHHHHHHhhcCccc
Q 004413 567 NFHGYLAPEYAMRG------HLTEKADVFSFGVAALEIISG----------RANSDNSLDMEKIYLLEWAWNLHENNQSL 630 (755)
Q Consensus 567 df~gy~aPE~~~~~------~~t~ksDVysfGvvllElltg----------~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 630 (755)
+...|+|||.+... .++.|+|||||||+++||+|| +.|+....... .....+... +..
T Consensus 213 gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~-~~~---- 286 (342)
T 1b6c_B 213 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD-PSVEEMRKV-VCE---- 286 (342)
T ss_dssp CCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS-CCHHHHHHH-HTT----
T ss_pred cCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCc-ccHHHHHHH-HHH----
Confidence 34689999998765 344799999999999999999 66765432211 011122221 111
Q ss_pred cccCCCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 631 GLVDPTLTE--FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 631 ~~~d~~l~~--~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
....+.+.. ...++...+.+++.+||+.+|++|||+.||++.|+.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 287 QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 122233321 2346677899999999999999999999999999976543
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-12 Score=134.47 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=64.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.+..++.++|||||||+++||+||+.|+....... ..++..+...+. ...+
T Consensus 249 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~------------------~~~~~~~~~~~~--~~~~ 308 (365)
T 3e7e_A 249 SGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE------------------CKPEGLFRRLPH--LDMW 308 (365)
T ss_dssp TSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE------------------EEECSCCTTCSS--HHHH
T ss_pred CCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc------------------eeechhccccCc--HHHH
Confidence 47999999999999999999999999999999999975322110 011122222221 2234
Q ss_pred HHHHHHhcccCCCCC-CCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMR-PPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~R-Psm~~v~~~L~~~~~ 678 (755)
-++...|++.+|.+| |++.++.+.|+....
T Consensus 309 ~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~ 339 (365)
T 3e7e_A 309 NEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ 339 (365)
T ss_dssp HHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence 467778899999998 688888888886544
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-12 Score=142.23 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=60.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++|||||||+++||+||+.|+........ ..++...... +.. . ++......+
T Consensus 353 ~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~--~~~~~~~i~~-~~~------~---~p~~~s~~~ 420 (543)
T 3c4z_A 353 PGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKELKQRVLE-QAV------T---YPDKFSPAS 420 (543)
T ss_dssp TTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC--HHHHHHHHHH-CCC------C---CCTTSCHHH
T ss_pred ccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh--HHHHHHHHhh-ccc------C---CCcccCHHH
Confidence 469999999999999999999999999999999999975422110 1111111111 110 1 111223356
Q ss_pred HHHHHHhcccCCCCCCCHH
Q 004413 649 IGVALLCTQASPMMRPPMS 667 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~ 667 (755)
.++...|++.+|.+||++.
T Consensus 421 ~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 421 KDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp HHHHHHHSCSSGGGSCCCB
T ss_pred HHHHHHhccCCHhHCCCCc
Confidence 6788999999999999863
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-11 Score=130.00 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=75.2
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
...|+|||.+.+..++.++|||||||+++||+||+.|+....... ..+..+...... ......++.... ......
T Consensus 231 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~ 305 (352)
T 2jii_A 231 DLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT-EDIMKQKQKFVD--KPGPFVGPCGHW--IRPSET 305 (352)
T ss_dssp CTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH-HHHHHHHHHHHH--SCCCEECTTSCE--ECCCHH
T ss_pred CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH-HHHHHHHHhccC--Chhhhhhhcccc--CCCcHH
Confidence 368999999999999999999999999999999999987543211 222222222221 112222222100 011246
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccccC
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~ 680 (755)
+.+++..|++.+|.+||++.+|+++|+......
T Consensus 306 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 338 (352)
T 2jii_A 306 LQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL 338 (352)
T ss_dssp HHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence 778899999999999999999999999876553
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=137.13 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=28.2
Q ss_pred ccchhhh-hcCCCCccceeeeehheeehhhhC
Q 004413 571 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 601 (755)
Q Consensus 571 y~aPE~~-~~~~~t~ksDVysfGvvllElltg 601 (755)
|+|||++ ....++.++|||||||+|+||+||
T Consensus 249 Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 249 YRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 9999976 566799999999999999999994
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-11 Score=141.47 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=62.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccC----C------CC-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVD----P------TL- 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d----~------~l- 637 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+..... ...|.......+......+ . .+
T Consensus 187 ~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~-----~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp 261 (676)
T 3qa8_A 187 LQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ-----PVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLP 261 (676)
T ss_dssp CTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH-----HHHSSTTCC------CCSCCCCSSSCCCCSSSC
T ss_pred cccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc-----hhhhhhhhhcccchhhhhhhhhccccccccccC
Confidence 469999999999999999999999999999999999875322 1233222111111111111 1 11
Q ss_pred --CCCCHHHHHHHHHHHHHhcccCCCCCCCHHH
Q 004413 638 --TEFNDKEALRVIGVALLCTQASPMMRPPMSR 668 (755)
Q Consensus 638 --~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~ 668 (755)
..........+.++...|++.+|++|||+.|
T Consensus 262 ~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~e 294 (676)
T 3qa8_A 262 TPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQ 294 (676)
T ss_dssp CSCCCCGGGHHHHHHHHHHHSCSSCC---CCTT
T ss_pred CchhhchhhhHHHHHHHHHHccCCHhhCcCHHH
Confidence 1233445677889999999999999999976
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=133.67 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=60.8
Q ss_pred ccccchhhhhcC-----------CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 569 HGYLAPEYAMRG-----------HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~-----------~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
.+|+|||++... .++.|+|||||||+++||+||+.|+....... ....+. +..
T Consensus 266 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~---------------~~~~~~-~~~ 329 (377)
T 3byv_A 266 RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALG---------------GSEWIF-RSC 329 (377)
T ss_dssp TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------C---------------CSGGGG-SSC
T ss_pred cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccccc---------------chhhhh-hhc
Confidence 789999999887 89999999999999999999999986432111 011111 111
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..++ ..+.+++..|++.+|++||++.|+++
T Consensus 330 ~~~~----~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 330 KNIP----QPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp CCCC----HHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred cCCC----HHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 2222 35778899999999999999999985
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-12 Score=134.71 Aligned_cols=95 Identities=8% Similarity=-0.137 Sum_probs=64.2
Q ss_pred ccccchhhhhc--CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHH
Q 004413 569 HGYLAPEYAMR--GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~--~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~ 645 (755)
.+|+|||.+.. ..++.++|||||||+++||+||+.|+......... .+............+ ........
T Consensus 255 ~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 326 (371)
T 3q60_A 255 VTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG--------SWKRPSLRVPGTDSLAFGSCTPLP 326 (371)
T ss_dssp GGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT--------CCCBCCTTSCCCCSCCCTTSSCCC
T ss_pred cCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc--------chhhhhhhhccccccchhhccCCC
Confidence 68999999987 78999999999999999999999998754322100 000000000111111 01111233
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++..|++.+|++|||+.|+++
T Consensus 327 ~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 327 DFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp HHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 46778999999999999999999964
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-11 Score=131.02 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=69.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh---HHHHHHHHHHHh--------hcCcc-ccccCC-
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME---KIYLLEWAWNLH--------ENNQS-LGLVDP- 635 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~---~~~l~~~~~~~~--------~~~~~-~~~~d~- 635 (755)
..|+|||.+.+..++.++|||||||+++||+||+.|+......+ .......+.... ..+.. .+.++.
T Consensus 257 ~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 336 (397)
T 1wak_A 257 RQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKK 336 (397)
T ss_dssp GGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTT
T ss_pred CcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCc
Confidence 67999999999999999999999999999999999997543211 111111111111 00110 011110
Q ss_pred ---------CC----------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 636 ---------TL----------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 636 ---------~l----------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. .+.+.+....+.+++..|++.+|++|||+.||++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 337 GDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp SSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00 1234566778899999999999999999999974
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-11 Score=127.79 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh----HHHHHHHHHH-------HhhcCc---------
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME----KIYLLEWAWN-------LHENNQ--------- 628 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~----~~~l~~~~~~-------~~~~~~--------- 628 (755)
.+|+|||.+.+..++.++|||||||+++||+||+.|+....... ...+...... .+..+.
T Consensus 199 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 278 (373)
T 1q8y_A 199 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 278 (373)
T ss_dssp GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC-
T ss_pred ccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCc
Confidence 67999999999999999999999999999999999987543211 1111111110 000000
Q ss_pred --cccccCCCC----------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 629 --SLGLVDPTL----------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 629 --~~~~~d~~l----------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+..... ...+......+.+++..|++.+|++|||+.||++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 279 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp -CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred chhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 000000000 1234566778899999999999999999999975
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-11 Score=123.72 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=63.4
Q ss_pred cccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..+|+|||.+. +.++.++||||+||+++||+||+.|+........ + ......+......+ ......
T Consensus 193 t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--~----~~~~~~~~~~~~~~-------~~~~~~ 258 (290)
T 1t4h_A 193 TPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ--I----YRRVTSGVKPASFD-------KVAIPE 258 (290)
T ss_dssp SCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH--H----HHHHTTTCCCGGGG-------GCCCHH
T ss_pred CcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH--H----HHHHhccCCccccC-------CCCCHH
Confidence 36899999776 6699999999999999999999999876433221 1 11122111111111 111235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.||++
T Consensus 259 l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 259 VKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhh
Confidence 778999999999999999999975
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.5e-10 Score=122.05 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=87.7
Q ss_pred eEEecCC-cCcCCCchhhcCCCCCCEEEccC-ccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 2 LLSVAHN-VFSGSVPRELGNLKELTVLSFGN-NNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 2 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
.++++++ +|+ .+|. |..+++|+.|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4678887 787 4777 99999999999996 999877778899999999999999999888888899999999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
|+|++..+..|..+. |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999866666666665 999999999887
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-11 Score=125.04 Aligned_cols=89 Identities=24% Similarity=0.342 Sum_probs=59.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+.+ +.++.++|||||||+++||+| |+.. ..+.. +.... +..... .+.+ ..+......
T Consensus 194 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~--~~~~~---~~~~~-~~~~~~--~~~~---~~~~~~~~~ 259 (303)
T 1zy4_A 194 AMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST--GMERV---NILKK-LRSVSI--EFPP---DFDDNKMKV 259 (303)
T ss_dssp CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS--HHHHH---HHHHH-HHSTTC--CCCT---TCCTTTSHH
T ss_pred ccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC--chhHH---HHHHh-cccccc--ccCc---cccccchHH
Confidence 45999999875 479999999999999999998 4332 11111 11111 111110 1111 223333456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.|+++
T Consensus 260 ~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 260 EKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHhcCcccCcCHHHHhC
Confidence 778999999999999999999985
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-11 Score=130.75 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=60.8
Q ss_pred ccccchhhh----------hcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCC
Q 004413 569 HGYLAPEYA----------MRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~----------~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~ 638 (755)
.+|||||++ ....++.|+|||||||++|||+||+.|+......+ ....++.. ..
T Consensus 271 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~---------------~~~~~~~~-~~ 334 (413)
T 3dzo_A 271 RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG---------------GSEWIFRS-CK 334 (413)
T ss_dssp TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS---------------CSGGGGSS-CC
T ss_pred CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh---------------hHHHHHhh-cc
Confidence 789999999 55668999999999999999999999987543211 01111110 01
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHH
Q 004413 639 EFNDKEALRVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 639 ~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.++ ..+.+++..|++.+|++||++.|++
T Consensus 335 ~~~----~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 335 NIP----QPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp CCC----HHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred cCC----HHHHHHHHHHccCChhhCcCHHHHH
Confidence 222 4577889999999999999987775
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-11 Score=131.01 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.1
Q ss_pred ccchhhh-hcCCCCccceeeeehheeehhhhCCcCC
Q 004413 571 YLAPEYA-MRGHLTEKADVFSFGVAALEIISGRANS 605 (755)
Q Consensus 571 y~aPE~~-~~~~~t~ksDVysfGvvllElltg~~p~ 605 (755)
|+|||.+ ....++.++||||+||+++||+||..|+
T Consensus 217 Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 217 YRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp TCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 9999986 5667999999999999999999865443
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-10 Score=125.27 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=66.3
Q ss_pred eccccccchhhhhc-------CCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC
Q 004413 566 SNFHGYLAPEYAMR-------GHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL 637 (755)
Q Consensus 566 ~df~gy~aPE~~~~-------~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l 637 (755)
.+..+|+|||++.+ ..++.++|||||||+++||+| |+.|+......+ ..+ . . +... .+.+
T Consensus 193 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~-~~i---~----~-~~~~---~~~~ 260 (434)
T 2rio_A 193 SGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE-SNI---I----R-GIFS---LDEM 260 (434)
T ss_dssp --CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH-HHH---H----H-TCCC---CCCC
T ss_pred CCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH-HHH---h----c-CCCC---cccc
Confidence 44578999999975 679999999999999999999 999986543322 111 1 1 1100 0111
Q ss_pred CC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TE-FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~-~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. ........+.+++..|++.+|.+|||+.||++
T Consensus 261 ~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 261 KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 11 23445567889999999999999999999974
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-11 Score=124.44 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC---CCCCHHHHHHHHHHHHHhcc
Q 004413 581 HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL---TEFNDKEALRVIGVALLCTQ 657 (755)
Q Consensus 581 ~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l---~~~~~~~~~~~~~l~~~C~~ 657 (755)
.++.++|||||||++|||+||+.|+......+.. . .....+.... ..........+.+++..|++
T Consensus 178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~ 245 (286)
T 3uqc_A 178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL----------A--PAERDTAGQPIEPADIDRDIPFQISAVAARSVQ 245 (286)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS----------E--ECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHC
T ss_pred CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh----------H--HHHHHhccCCCChhhcccCCCHHHHHHHHHHcc
Confidence 3789999999999999999999998754321100 0 0000011100 01111223457889999999
Q ss_pred cCCCCCCCHHHHHHHHhccccc
Q 004413 658 ASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 658 ~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+|++| |+.|+++.|+.....
T Consensus 246 ~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 246 GDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp TTSSCC-CHHHHHHHHHHHHC-
T ss_pred cCCccC-CHHHHHHHHHHHhcc
Confidence 999999 999999999986554
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-10 Score=119.31 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=62.3
Q ss_pred ccccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 567 NFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 567 df~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
+..+|+|||.+.+..++.++|||||||+++||+||..|.. +..... .....+. ..........
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-----~~~~~~----~~~~~~~--------~~~~~~~~~~ 300 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-----ERVRII----TDVRNLK--------FPLLFTQKYP 300 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-----HHHHHH----HHHHTTC--------CCHHHHHHCH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-----HHHHHH----HHhhccC--------CCcccccCCh
Confidence 3478999999999999999999999999999999977631 111111 1111111 1111123334
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+.+++..|++.+|.+||++.|+++
T Consensus 301 ~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 301 QEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred hHHHHHHHHccCCCCcCCCHHHHhh
Confidence 5678999999999999999999975
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-10 Score=122.30 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=65.0
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhc--CCCCCCEEEeeC--ccccCC-----C
Q 004413 88 DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM--SLKNLTDLSLRN--ALITGS-----I 158 (755)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~--n~l~~~-----~ 158 (755)
..+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+.......+. .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34444555555555554211 1222 22 45555555555444332222232 456666666542 111111 1
Q ss_pred Cccc--cCCCCCCEEeCCCCCCCCCCccccc---CCCCCCEEEccCCcCCCC----CCc--ccCCCCCEEEeecCcCCC
Q 004413 159 PSGI--GELQNLQTLDLSFNNLTGQIPRTLF---NIGSLNYLFLGNNSLSGT----LPT--QKSENLQNIDLSYNHLSG 226 (755)
Q Consensus 159 p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~--~~~~~L~~L~Ls~N~l~g 226 (755)
...+ ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+.+. ++. ..+++|+.|+|++|.|+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1111 2356677777766666543332332 356677777777766642 111 123667777777776653
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-10 Score=122.04 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=64.7
Q ss_pred cccccchhhhhcC-CCCc-cceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcccccc------CCCCC-
Q 004413 568 FHGYLAPEYAMRG-HLTE-KADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLV------DPTLT- 638 (755)
Q Consensus 568 f~gy~aPE~~~~~-~~t~-ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------d~~l~- 638 (755)
...|+|||.+... .++. ++||||||++++||+||+.|+....... .+.. .+..+....-. .+...
T Consensus 213 ~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~----~i~~~~~~~~~~~~~~~~~~~~~ 286 (348)
T 2pml_X 213 TYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV--ELFN----NIRTKNIEYPLDRNHFLYPLTNK 286 (348)
T ss_dssp CGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH--HHHH----HHTSCCCCCCCSSSSSTTTTCC-
T ss_pred CcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH--HHHH----HHhccCcCCccchhhhhcccccc
Confidence 3679999999877 6766 9999999999999999999987654311 1111 12222211000 00000
Q ss_pred ---CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 ---EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ---~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.........+.+++..|++.+|.+||++.|+++
T Consensus 287 ~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 287 KSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp -------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 000122346778999999999999999999975
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-10 Score=133.36 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=59.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.++. +.++|||||||+++||++|..|+...... .+ ... .........+
T Consensus 241 ~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~-------------------~~-~~~--~~~~~~~~~l 297 (681)
T 2pzi_A 241 PGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD-------------------GL-PED--DPVLKTYDSY 297 (681)
T ss_dssp TTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS-------------------SC-CTT--CHHHHHCHHH
T ss_pred ccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc-------------------cc-ccc--ccccccCHHH
Confidence 5799999987764 99999999999999999998886531100 00 000 0011223467
Q ss_pred HHHHHHhcccCCCCCCC-HHHHHHHHhcc
Q 004413 649 IGVALLCTQASPMMRPP-MSRVVAMLAGD 676 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-m~~v~~~L~~~ 676 (755)
.++...|++.+|.+||+ +.++...|.+.
T Consensus 298 ~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 298 GRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp HHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred HHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 78999999999999995 56666666553
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=116.18 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=107.7
Q ss_pred ccCCccCcEEEccccCC---------CCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCc
Q 004413 42 IGNLAKLEQLYLNSWGA---------GGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS 112 (755)
Q Consensus 42 ~~~l~~L~~L~L~~n~l---------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 112 (755)
+.++++|+.|.+..+.. .+.+...+..+++|+.|+|++|.-. .++. +. +++|++|+|..|.++.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 33456666666644322 1123445566777777777766311 2332 32 67777777777766533222
Q ss_pred ccc--CCCCCCeeecCCC--C-CCCCCh----hhh--cCCCCCCEEEeeCccccCCCCccc---cCCCCCCEEeCCCCCC
Q 004413 113 SLS--KLASLDSLRISDI--Y-NVSSSL----DFV--MSLKNLTDLSLRNALITGSIPSGI---GELQNLQTLDLSFNNL 178 (755)
Q Consensus 113 ~l~--~l~~L~~L~l~~n--~-~~~~~~----~~l--~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l 178 (755)
.+. .+++|+.|+|+.+ . ...... ..+ ..+++|+.|+|.+|.+.+..+..+ ..+++|+.|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 333 5777777777421 1 111111 122 257899999999998875433222 2478999999999999
Q ss_pred CCC----CcccccCCCCCCEEEccCCcCCCCCCcccCC-CCCEEEeecCc
Q 004413 179 TGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE-NLQNIDLSYNH 223 (755)
Q Consensus 179 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-~L~~L~Ls~N~ 223 (755)
.+. ++..+..+++|+.|+|++|.++...-..+.. -...+++++|+
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 864 3444456799999999999887432221112 13568898887
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-10 Score=115.14 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=54.1
Q ss_pred cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH----HHHHHHHHHHHH
Q 004413 579 RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND----KEALRVIGVALL 654 (755)
Q Consensus 579 ~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~----~~~~~~~~l~~~ 654 (755)
...++.++|||||||+++||+||+.|+........ ... ....+.......+. .....+.+++..
T Consensus 172 ~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 239 (299)
T 3m2w_A 172 GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-----------SPG-MKTRIRMGQYEFPNPEWSEVSEEVKMLIRN 239 (299)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------------CC-SCCSSCTTCCSSCHHHHTTSCHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-----------hHH-HHHHHhhccccCCchhcccCCHHHHHHHHH
Confidence 35678899999999999999999999865322110 000 01111111011121 123467789999
Q ss_pred hcccCCCCCCCHHHHHH--HHhc
Q 004413 655 CTQASPMMRPPMSRVVA--MLAG 675 (755)
Q Consensus 655 C~~~~p~~RPsm~~v~~--~L~~ 675 (755)
|++.+|.+|||+.|+++ .+..
T Consensus 240 ~l~~dP~~Rps~~e~l~hp~~~~ 262 (299)
T 3m2w_A 240 LLKTEPTQRMTITEFMNHPWIMQ 262 (299)
T ss_dssp HTCSSTTTSCCHHHHHTSHHHHT
T ss_pred HcccChhhCCCHHHHhcChhhcc
Confidence 99999999999999986 4444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.9e-08 Score=93.00 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=42.8
Q ss_pred hcCCCCCCEEEccCc-cCCCC----CcccccCCccCcEEEccccCCCCC----CchhhhcCCCCCEEEccCCCCCCC---
Q 004413 18 LGNLKELTVLSFGNN-NFSGT----LPPEIGNLAKLEQLYLNSWGAGGE----IPSTYAKLRNMQTLWASDAPFTGK--- 85 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--- 85 (755)
+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444556666666665 55421 223344445555555555555432 122333445555555555555422
Q ss_pred -cchhhcCCCCCcEEEc--cCCCCC
Q 004413 86 -IPDFIGNWTKLKSLRF--QGNSFQ 107 (755)
Q Consensus 86 -~p~~~~~l~~L~~L~L--~~n~l~ 107 (755)
+...+...++|++|+| ++|.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333344444555555 444444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7e-06 Score=89.01 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=90.9
Q ss_pred hhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCC
Q 004413 16 RELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTK 95 (755)
Q Consensus 16 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 95 (755)
..|.++++|+.+.|.++... .....|.++.+|+.+.+..+ +.......|.++..|+.+.+..+... +.+.+....+
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 45677788888888655332 34556777788888877654 33333456677777777666554322 2222333345
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChh---------------------hhcCCCCCCEEEeeCccc
Q 004413 96 LKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLD---------------------FVMSLKNLTDLSLRNALI 154 (755)
Q Consensus 96 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~---------------------~l~~l~~L~~L~L~~n~l 154 (755)
|+.+.+..+ ++......+..+..|+.+.+..+. ...... .+..+.+|+.+.+..+ +
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-C
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeeccccccccccccccccccc-c
Confidence 555555432 121223344555566666554321 122222 3444555555555433 3
Q ss_pred cCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCC
Q 004413 155 TGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200 (755)
Q Consensus 155 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 200 (755)
+..-...|.++.+|+.++|..+ ++..-..+|.+|.+|+.+++..|
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3233344555555555555432 43233345555555555555444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-07 Score=90.44 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=20.8
Q ss_pred hhcCCCCCEEEccCC-CCCCC----cchhhcCCCCCcEEEccCCCCC
Q 004413 66 YAKLRNMQTLWASDA-PFTGK----IPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 66 ~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 444555666666655 55421 2233344455555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-07 Score=94.28 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=72.3
Q ss_pred hcCCCCCCE--EEccCccCC---CCCcccccCCccCcEEEccccCCCC--CCchhhhcCCCCCEEEccCCCCCCCcchhh
Q 004413 18 LGNLKELTV--LSFGNNNFS---GTLPPEIGNLAKLEQLYLNSWGAGG--EIPSTYAKLRNMQTLWASDAPFTGKIPDFI 90 (755)
Q Consensus 18 l~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 90 (755)
|...+.|+. ++++.|... ..++....++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|++++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444455554 566777432 1112222457888889998888877 4456777889999999999988854 233
Q ss_pred cCCC--CCcEEEccCCCCCCCCCc-------cccCCCCCCeeec
Q 004413 91 GNWT--KLKSLRFQGNSFQGPIPS-------SLSKLASLDSLRI 125 (755)
Q Consensus 91 ~~l~--~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~l 125 (755)
..+. +|++|+|++|.+++.+|. .+..+++|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3333 899999999998876652 3667888888864
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=86.21 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=56.6
Q ss_pred hhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc-c--CCC
Q 004413 137 FVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-K--SEN 213 (755)
Q Consensus 137 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~--~~~ 213 (755)
+|.++..|+.+.+..+... .....|.++.+|+.+.+. +.++.....+|.++.+|+.++|..+ ++ .+... + ..+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence 5667788888888665433 445567788888888885 4455344557778888888888654 44 23332 2 267
Q ss_pred CCEEEeecCcCCCCCcc
Q 004413 214 LQNIDLSYNHLSGPFPS 230 (755)
Q Consensus 214 L~~L~Ls~N~l~g~ip~ 230 (755)
|+.+.|..+ ++ .|..
T Consensus 336 L~~i~ip~s-v~-~I~~ 350 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPE 350 (394)
T ss_dssp CCEEEECTT-CC-BCCG
T ss_pred CCEEEECcc-cC-EEhH
Confidence 888888544 44 3443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-08 Score=99.32 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=81.2
Q ss_pred EccCccCCCCCcc-cccCCccCcE--EEccccCCC---CCCchhhhcCCCCCEEEccCCCCCC--CcchhhcCCCCCcEE
Q 004413 28 SFGNNNFSGTLPP-EIGNLAKLEQ--LYLNSWGAG---GEIPSTYAKLRNMQTLWASDAPFTG--KIPDFIGNWTKLKSL 99 (755)
Q Consensus 28 ~Ls~n~l~~~~p~-~~~~l~~L~~--L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L 99 (755)
...+|..++.+.- .|...+.|+. ++++.|... ..++....++++|+.|+|++|++++ .++..+..+++|+.|
T Consensus 122 ~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L 201 (267)
T 3rw6_A 122 SKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201 (267)
T ss_dssp HHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEE
T ss_pred HhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEE
Confidence 3444444433321 2445555665 666766432 1122223578999999999999997 556778899999999
Q ss_pred EccCCCCCCCCCccccCCC--CCCeeecCCCCCCCCCh-------hhhcCCCCCCEEE
Q 004413 100 RFQGNSFQGPIPSSLSKLA--SLDSLRISDIYNVSSSL-------DFVMSLKNLTDLS 148 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~~~~~~~-------~~l~~l~~L~~L~ 148 (755)
+|++|+|++. ..+..+. +|++|+|.+|.+....+ ..+..+++|+.|+
T Consensus 202 ~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 202 NLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999854 3344444 99999999999875322 2567889998876
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.6e-06 Score=88.31 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=78.1
Q ss_pred cccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCC
Q 004413 113 SLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192 (755)
Q Consensus 113 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 192 (755)
.|.++.+|+.+.+.+ ........++.++.+|+.+.+. +.++......|.++.+|+.++|..+ ++..-..+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 466778899988865 3344555678888999999986 4455455667888999999999765 554555688899999
Q ss_pred CEEEccCCcCCCCCCccc---CCCCCEEEeecCcC
Q 004413 193 NYLFLGNNSLSGTLPTQK---SENLQNIDLSYNHL 224 (755)
Q Consensus 193 ~~L~Ls~N~l~~~~p~~~---~~~L~~L~Ls~N~l 224 (755)
+.+.+..+ ++ .+.... ..+|+.+++.+|..
T Consensus 337 ~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 337 ERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred CEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 99999655 55 344432 37899999988754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=87.11 Aligned_cols=178 Identities=10% Similarity=0.026 Sum_probs=116.7
Q ss_pred chhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCC---------------------CCCchhhhcCCCCC
Q 004413 15 PRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAG---------------------GEIPSTYAKLRNMQ 73 (755)
Q Consensus 15 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---------------------~~~p~~~~~l~~L~ 73 (755)
...|.++.+|+.+++..+ ++......|.++..|+.+.+..+... ......|..+.+|+
T Consensus 178 ~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCC
T ss_pred cccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccce
Confidence 456778889999988776 44344556777777777766543321 11112334444555
Q ss_pred EEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCcc
Q 004413 74 TLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNAL 153 (755)
Q Consensus 74 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 153 (755)
.+.+..+... .....|.++..|+.+.+..+.+. ...+..+.+|+.+.+.+ .+......+|.++.+|+.++|..+
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-
Confidence 5555443222 22334455555555555443322 23567788899888875 355566678999999999999754
Q ss_pred ccCCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCC
Q 004413 154 ITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200 (755)
Q Consensus 154 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 200 (755)
++..-...|.+|.+|+.+++..| ++..-..+|.+|.+|+.+++..+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66455678999999999999877 66555678999999999998655
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.9e-06 Score=77.71 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=56.4
Q ss_pred ccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC-CCCCcchhhcCC----CCCcEEEccCCC-CCCCCCccccCCCC
Q 004413 46 AKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP-FTGKIPDFIGNW----TKLKSLRFQGNS-FQGPIPSSLSKLAS 119 (755)
Q Consensus 46 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 119 (755)
-+|+.|||++|.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777665544556677777777777774 554333445554 367888887763 66444445667788
Q ss_pred CCeeecCCCCCCC
Q 004413 120 LDSLRISDIYNVS 132 (755)
Q Consensus 120 L~~L~l~~n~~~~ 132 (755)
|++|++++|...+
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888776444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.82 E-value=6.8e-06 Score=77.28 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=37.6
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccC-CCCCCchhhhcC----CCCCEEEccCCC-CCCCcchhhcCCCCC
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGGEIPSTYAKL----RNMQTLWASDAP-FTGKIPDFIGNWTKL 96 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L 96 (755)
+|+.|||++|.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555543333344455555555555553 332222223332 245555555543 443323334445555
Q ss_pred cEEEccCC
Q 004413 97 KSLRFQGN 104 (755)
Q Consensus 97 ~~L~L~~n 104 (755)
++|+|++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00038 Score=74.67 Aligned_cols=186 Identities=12% Similarity=0.023 Sum_probs=132.9
Q ss_pred CcCCCchhhcCCCCCCEEEccCccCCC------------CCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEc
Q 004413 10 FSGSVPRELGNLKELTVLSFGNNNFSG------------TLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77 (755)
Q Consensus 10 l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 77 (755)
++..-...+..+.+|+.+.+..+.... .....+.....+..+.+..+. .......+..+.+|+.+.+
T Consensus 146 v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~ 224 (379)
T 4h09_A 146 VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITI 224 (379)
T ss_dssp CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEEC
T ss_pred eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeee
Confidence 343445678888899988887654321 122334455666666654322 2233456778889999988
Q ss_pred cCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCC
Q 004413 78 SDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS 157 (755)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 157 (755)
..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+.. .+.......|.++.+|+.+.+.++.++..
T Consensus 225 ~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 225 TSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp CTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred ccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccccccccee
Confidence 665 33334556788899999999776 5544456788899999999865 45556666889999999999998888866
Q ss_pred CCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCC
Q 004413 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200 (755)
Q Consensus 158 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 200 (755)
-...|.+|.+|+.++|..+ ++..-..+|.+|.+|+.+.+..+
T Consensus 302 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6778999999999999765 66455568889999999887544
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00087 Score=71.84 Aligned_cols=197 Identities=12% Similarity=0.058 Sum_probs=134.8
Q ss_pred hhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCC------------CCchhhhcCCCCCEEEccCCCCCC
Q 004413 17 ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGG------------EIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 17 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
.|.+. +|+.+.+..+ ++......|.++.+|+.+.+..+.... .....+.....+..+.+..+. ..
T Consensus 131 ~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 207 (379)
T 4h09_A 131 IFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KT 207 (379)
T ss_dssp TTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CE
T ss_pred ccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eE
Confidence 34443 6777777654 443456678888999988876544321 112234455566666655433 22
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
.....+....+|+.+.+..+ +.......+..+..|+.+.+..+ +......++.++.+|+.+.+..+ +.......|..
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 34456777889999998765 33344567888999999999764 55666678889999999999754 54455667899
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc---CCCCCEEEeec
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK---SENLQNIDLSY 221 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~~L~~L~Ls~ 221 (755)
+.+|+.+.+..+.++..-..+|.+|.+|+.+.|..+ ++ .+.... ..+|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 999999999999888656678999999999999755 54 333322 25777776543
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=73.48 Aligned_cols=89 Identities=6% Similarity=-0.075 Sum_probs=54.0
Q ss_pred cccccchhhhhcCCCCccceeeeehhe-eehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 568 FHGYLAPEYAMRGHLTEKADVFSFGVA-ALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 568 f~gy~aPE~~~~~~~t~ksDVysfGvv-llElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
...|||||.+.+.. +.++||||+|++ ..++.+|..|+.. ...+.............. .............
T Consensus 240 t~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~ 310 (336)
T 2vuw_A 240 CDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN-----VLWLHYLTDKMLKQMTFK---TKCNTPAMKQIKR 310 (336)
T ss_dssp CCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH-----HHHHHHHHHHHHHTCCCS---SCCCSHHHHHHHH
T ss_pred eecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc-----hhhhhHHHHhhhhhhccC---cccchhhhhhcCH
Confidence 36799999988655 999999998776 7889999988631 100011111111111000 0011112234566
Q ss_pred HHHHHHHHhcccCCCCCCCHHHHH
Q 004413 647 RVIGVALLCTQASPMMRPPMSRVV 670 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm~~v~ 670 (755)
.+.++...|++.+ |+.|++
T Consensus 311 ~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 311 KIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHHHhccC-----CHHHHH
Confidence 7888999999865 888876
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00026 Score=67.76 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=39.0
Q ss_pred hhcCCCCCEEEccCCCCCC----CcchhhcCCCCCcEEEccCCCCCCC----CCccccCCCCCCeeecCCCCC-CCC---
Q 004413 66 YAKLRNMQTLWASDAPFTG----KIPDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRISDIYN-VSS--- 133 (755)
Q Consensus 66 ~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~-~~~--- 133 (755)
+..-..|+.|+|++|.+.. .+...+..-+.|++|+|++|.|+.. +...+..-+.|+.|+|++|.. ...
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334445555555554442 2223333344555555555555421 122333344555555553322 111
Q ss_pred ---ChhhhcCCCCCCEEEeeCccc
Q 004413 134 ---SLDFVMSLKNLTDLSLRNALI 154 (755)
Q Consensus 134 ---~~~~l~~l~~L~~L~L~~n~l 154 (755)
....+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 112344455666666665543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00061 Score=65.20 Aligned_cols=111 Identities=10% Similarity=0.187 Sum_probs=54.9
Q ss_pred cCCCCCEEEccCC-CCCC----CcchhhcCCCCCcEEEccCCCCCCC----CCccccCCCCCCeeecCCCCCCCCChh--
Q 004413 68 KLRNMQTLWASDA-PFTG----KIPDFIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRISDIYNVSSSLD-- 136 (755)
Q Consensus 68 ~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~~~-- 136 (755)
+-+.|++|+|++| .+.. .+...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+......
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455556666553 4432 1334444555666666666666522 222333445666666666665543322
Q ss_pred --hhcCCCCCCEEEeeCcc---ccCC----CCccccCCCCCCEEeCCCCCC
Q 004413 137 --FVMSLKNLTDLSLRNAL---ITGS----IPSGIGELQNLQTLDLSFNNL 178 (755)
Q Consensus 137 --~l~~l~~L~~L~L~~n~---l~~~----~p~~~~~l~~L~~L~Ls~N~l 178 (755)
.+..-+.|+.|+|++|. +... +...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33444556666665432 2211 223344445666666665543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0079 Score=53.54 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=36.6
Q ss_pred EEEccCccCC-CCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCC
Q 004413 26 VLSFGNNNFS-GTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFT 83 (755)
Q Consensus 26 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 83 (755)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666676664 24554332 35777777777776655566777777777777777664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.016 Score=51.49 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=29.9
Q ss_pred EEEccccCCC-CCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 50 QLYLNSWGAG-GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 50 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
.++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 23443321 34666666666666444445555666666666666553
|
| >2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.012 Score=55.34 Aligned_cols=99 Identities=27% Similarity=0.321 Sum_probs=75.8
Q ss_pred CChhhhcccccCCCCcceeeccccCCCceEEeeeeeeeeccCChhhhccccceEeEEEEcCeeecccccchhhcCCCCce
Q 004413 341 RTPELYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLRWKDFDISKEAGGPNRA 420 (755)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 420 (755)
.|.+++++++....++++...+..++.|.+.++|++... ...+.++|++++.|....++|++...+|+ ..+
T Consensus 52 ~~~~lY~TaR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~--------~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~ 122 (174)
T 2jwp_A 52 EDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYF--------AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STA 122 (174)
T ss_dssp HHHHTTTCCCCCCSCEEEEEECCSCEEEEEEEEEECCSC--------CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSC
T ss_pred CCchhhhhhccCCCCeEEEEEeCCCeEEEEEEEEecccc--------CCCCCeEeEEEECCEEeecCcCHHHhhCC-Cee
Confidence 467799999988888887766667899999999999764 12678899999999999999999988876 456
Q ss_pred EEEeeEeeecCCcceEEEEEc-CCccccc
Q 004413 421 IIKNFNATVSENHLEIHLFWA-GKGTCCV 448 (755)
Q Consensus 421 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 448 (755)
+.+.|...+..+.+.++..+. ..+.+++
T Consensus 123 ~~~~~~~~v~~~~l~i~~~~~~~~g~L~I 151 (174)
T 2jwp_A 123 HDEIIPISIKKGKLSVQGEVSTFTGKLSV 151 (174)
T ss_dssp EEEEEEEEEETTEEEETTEEEECCSEEEE
T ss_pred EEEEEEEEEecCceeeeeeecccCCeEEE
Confidence 778888887777766654443 3344433
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.029 Score=63.44 Aligned_cols=35 Identities=11% Similarity=-0.110 Sum_probs=14.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcC
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 604 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p 604 (755)
++|||||.+. +++..++|+||.|++++++.++..+
T Consensus 403 p~YmAPE~l~-g~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 403 FFVFVNELFA-ENKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp HHHHHHHHC------------------CCCCTTHHH
T ss_pred hhhccHHHhC-CCCCCcccccccccchhhhccccch
Confidence 6899999876 5678899999999999999887554
|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.56 E-value=0.11 Score=35.76 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=17.4
Q ss_pred eeEEeehHHHHHHHHHHHHHHHhhhcccc
Q 004413 486 GLIVGIAVPLGILGLIAISIVFYMRRKKD 514 (755)
Q Consensus 486 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 514 (755)
.++.+++.+++++++++++.++|+|||+.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 45556666666666666555666666554
|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=0.15 Score=35.11 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=16.4
Q ss_pred eeEEeehHHHHHHHHHHHHHHHhhhcccc
Q 004413 486 GLIVGIAVPLGILGLIAISIVFYMRRKKD 514 (755)
Q Consensus 486 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 514 (755)
.++.|++.++..+++++...++|+|||+.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 45555555565555555555666666554
|
| >2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A | Back alignment and structure |
|---|
Probab=84.26 E-value=0.31 Score=33.46 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=14.3
Q ss_pred eEEeehHHHHHHHHHHHHHHHhhhcccc
Q 004413 487 LIVGIAVPLGILGLIAISIVFYMRRKKD 514 (755)
Q Consensus 487 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 514 (755)
.+++.++++.++++++++.++|+|||+.
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 3455555544444444444555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 755 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-19 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-16 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-04 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 1e-13 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 2e-13 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 2e-13 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 4e-13 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 2e-12 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 4e-12 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 3e-11 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 6e-11 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-06 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 2e-10 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 4e-10 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 4e-10 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 5e-10 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 6e-10 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 3e-05 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 8e-10 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 1e-09 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 2e-09 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 3e-09 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 6e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 7e-09 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 8e-09 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 2e-08 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 3e-08 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 4e-08 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 7e-08 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 2e-07 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 2e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 9e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 3e-07 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 4e-07 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 7e-07 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 2e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-06 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 6e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 3e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 5e-05 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 8e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 9e-05 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 9e-05 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 2e-04 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 2e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 2e-04 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 3e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 3e-04 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 4e-04 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 6e-04 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 8e-04 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 0.001 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.004 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 0.004 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.004 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.0 bits (214), Expect = 3e-19
Identities = 51/257 (19%), Positives = 101/257 (39%), Gaps = 10/257 (3%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
VP++L + +L NN + + NL L L L + P +A L +
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
+ L+ S +L+ + + + + L+++ ++ L + + +
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
+K L+ + + + IT +IP G+ +L L L N +T +L + +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 193 NYLFLGNNSLSGTLPT--QKSENLQNIDLSYNHL-SGPFPSWVTSNLQ-MNLVANNFTFD 248
L L NS+S + +L+ + L+ N L P +Q + L NN +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257
Query: 249 RSNISVFPGLHCLQRNF 265
SN PG + + ++
Sbjct: 258 GSNDFCPPGYNTKKASY 274
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.7 bits (195), Expect = 8e-17
Identities = 56/270 (20%), Positives = 96/270 (35%), Gaps = 14/270 (5%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L + +N + + NLK L L NN S P L KLE+LYL+
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95
Query: 63 PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDS 122
L+ ++ + + + + L G + + L
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSY 154
Query: 123 LRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQI 182
+RI+D + +LT+L L IT + + L NL L LSFN+++
Sbjct: 155 IRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211
Query: 183 PRTLFNIGSLNYLFLGNNSLSGTLPTQKS-ENLQNIDLSYNHLS--------GPFPSWVT 233
+L N L L L NN L + +Q + L N++S P +
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271
Query: 234 SNLQ-MNLVANNFTFDRSNISVFPGLHCLQ 262
++ ++L +N + S F ++
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.4 bits (145), Expect = 2e-10
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 4/132 (3%)
Query: 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
+ L L+N IT L+NL TL L N ++ P + L L+L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 202 LSGTLPTQKSENLQNIDLSYNHLSGPFPS---WVTSNLQMNLVANNFTFDRSNISVFPGL 258
L LP + + LQ + + N ++ S + + + L N F G+
Sbjct: 91 LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 259 HCLQRNFPCNRN 270
L + N
Sbjct: 150 KKLSYIRIADTN 161
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 6/116 (5%)
Query: 157 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT--QKSENL 214
+P + + LDL N +T N+ +L+ L L NN +S P L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 215 QNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQRNFPCNRN 270
+ + LS N L L + + SVF GL+ +
Sbjct: 82 ERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 79.3 bits (194), Expect = 2e-16
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 66 YAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRI 125
AKL N+++L A++ + P I T L L GN + +L+ L +L L +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 248
Query: 126 SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP--------------------SGIGEL 165
++ N S+L + L LT+L L I+ P S I L
Sbjct: 249 AN--NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 166 QNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
+NL L L FNN++ P + ++ L LF NN +S N+ + +N +S
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 364
Query: 226 GPFPSWVTSNLQMNLVANN 244
P + + + +
Sbjct: 365 DLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.9 bits (154), Expect = 2e-11
Identities = 63/257 (24%), Positives = 92/257 (35%), Gaps = 19/257 (7%)
Query: 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWA 77
+ L LT ++F NN + P + NL KL + +N+ P TL+
Sbjct: 62 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119
Query: 78 SDAPFTGKIPDF------------IGNWTKLKSLRFQGNSFQGPIPSSLSKLASL-DSLR 124
+ + + I + + L L G + L LA+L R
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179
Query: 125 ISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184
+ N S + + L NL L N I+ P GI NL L L+ N L
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IG 235
Query: 185 TLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
TL ++ +L L L NN +S P L + L N +S P + L + N
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295
Query: 245 FTFDRSNISVFPGLHCL 261
D S IS L L
Sbjct: 296 QLEDISPISNLKNLTYL 312
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 58.1 bits (139), Expect = 2e-09
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 8/173 (4%)
Query: 89 FIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLS 148
+ T L+SL N P + +LD L + N + + SL NLTDL
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSL--NGNQLKDIGTLASLTNLTDLD 247
Query: 149 LRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT 208
L N I+ P + L L L L N ++ P L + +L L L N L P
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 303
Query: 209 QKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCL 261
+NL + L +N++S P + LQ ANN D S+++ ++ L
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWL 356
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
NLK LT L+ NN S P + +L KL++L+ + S+ A L N+ L A
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGN 104
+ P + N T++ L
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 23/282 (8%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
L E G N + T+ +L ++ L + G + L N+ + S+
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV-------- 131
T P + N TKL + N P + + +L + I ++
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 132 -------SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPR 184
S+++ + +L LT L + + + L L+ LD+S N ++
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 185 TLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANN 244
+ +L L NN +S P NL + L+ N L +NL +ANN
Sbjct: 194 --AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 251
Query: 245 FTFDRSNISVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQM 286
+ + +S L L+ N A + +
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNS 55
L A+N S L NL + LS G+N S P + NL ++ QL LN
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 7e-04
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 79 DAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFV 138
D P D + + + S + L + +L+ S+D V
Sbjct: 9 DTPINQIFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQAD--RLGIKSIDGV 62
Query: 139 MSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177
L NLT ++ N +T P + L L + ++ N
Sbjct: 63 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.5 bits (189), Expect = 4e-16
Identities = 49/260 (18%), Positives = 74/260 (28%), Gaps = 28/260 (10%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI---------- 62
+VP + + N S L L+L+S
Sbjct: 25 AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 63 ---------------PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ 107
P+T+ L + TL P L+ L Q N+ Q
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 108 GPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQN 167
+ L +L L + S L +L L L + P +L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 168 LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK-SENLQNIDLSYNHLSG 226
L TL L NNL+ L + +L YL L +N + LQ S + +
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262
Query: 227 PFPSWVTSNLQMNLVANNFT 246
P + L AN+
Sbjct: 263 SLPQRLAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 3e-12
Identities = 45/252 (17%), Positives = 71/252 (28%), Gaps = 33/252 (13%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL------------------------ 38
+ + N S + LT+L +N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 39 -PPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK 97
P L +L L+L+ G P + L +Q L+ D D + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 98 SLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS 157
L GN + L SLD L + L L L L ++
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQN- 216
+ L+ LQ L L+ N L ++ + +LP + L
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLP----QRLAGR 271
Query: 217 --IDLSYNHLSG 226
L+ N L G
Sbjct: 272 DLKRLAANDLQG 283
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 64/253 (25%), Positives = 96/253 (37%), Gaps = 52/253 (20%)
Query: 3 LSVAHNVFSG--SVPRELGNLKELTVLSF-GNNNFSGTLPPEIGNLAKLEQLYLNSWGAG 59
L ++ +P L NL L L G NN G +PP I L +L LY+
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
G IP ++++ + TL S +G +P I + L + F GN G IP S +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 120 LDS-----------------------------------------------LRISDIYNVS 132
L + +++
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
L V KNL L LRN I G++P G+ +L+ L +L++SFNNL G+IP N+
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293
Query: 193 NYL-FLGNNSLSG 204
+ + N L G
Sbjct: 294 DVSAYANNKCLCG 306
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 57.1 bits (136), Expect = 2e-09
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 7 HNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL--NSWGAGGEIPS 64
+N G++P+ L LK L L+ NN G + P+ GNL + + N G +P+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 55.9 bits (133), Expect = 6e-09
Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 31/256 (12%)
Query: 19 GNLKELTVLSFGNNNFSG--TLPPEIGNLAKLEQLYLNSW-------------------- 56
+ L N +P + NL L LY+
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 57 -----GAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIP 111
G IP ++++ + TL S +G +P I + L + F GN G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 171
S + L + ++ N + + + S +
Sbjct: 167 DSYGSFSKLFT-SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--KSENLQNIDLSYNHLSGPFP 229
N + +LN L L NN + GTLP + + L ++++S+N+L G P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 230 SWVT-SNLQMNLVANN 244
++ ANN
Sbjct: 286 QGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 30/177 (16%), Positives = 44/177 (24%), Gaps = 26/177 (14%)
Query: 7 HNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTY 66
N SG++P G+ +L + N T S S
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 67 AKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRIS 126
+G L L + N G +P L++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ---------- 266
Query: 127 DIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183
LK L L++ + G IP G G LQ + N P
Sbjct: 267 --------------LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.1 bits (92), Expect = 7e-04
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNF--SGTLPP 40
L+V+ N G +P + GNL+ V ++ NN LP
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (170), Expect = 1e-13
Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 570 GYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN 626
++APE + + ++DV++FG+ E+++G+ N + ++I +
Sbjct: 171 LWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGR------ 224
Query: 627 NQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
G + P L++ + + C + RP +++A +
Sbjct: 225 ----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASI 267
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (170), Expect = 2e-13
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF + + + + V+ KT L ++A E T K+DV+SFGV E+++
Sbjct: 173 DFGLARDMYDKEFDSVHNKTGAKLP--VKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 230
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
A ++ + L + + L+ P E+ V+ L C
Sbjct: 231 GAPPYPDVN-----TFDITVYLLQGRR---LLQP---EYCPDPLYEVM---LKCWHPKAE 276
Query: 662 MRPPMSRVVAML 673
MRP S +V+ +
Sbjct: 277 MRPSFSELVSRI 288
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (167), Expect = 2e-13
Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 27/152 (17%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFH----GYLAPEYAMRGHLTEKADV 588
D N K+ + G Q S + +PE + K+DV
Sbjct: 126 DLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDV 185
Query: 589 FSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648
+SFGV E+ S + ++ + + L P L + V
Sbjct: 186 WSFGVLMWEVFSEGKIPYENRSNSEVV--------EDISTGFRLYKPRL------ASTHV 231
Query: 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
+ C + P RP SR++ LA E G
Sbjct: 232 YQIMNHCWKERPEDRPAFSRLLRQLAEIAESG 263
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (166), Expect = 4e-13
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 29/154 (18%)
Query: 541 QDFDPSN---------KLGEGGYGPVYKKTQLMLSNFHG------YLAPEYAMRGHLTEK 585
+D N K+ + G V + G + APE T
Sbjct: 134 RDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSA 193
Query: 586 ADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645
+DV+SFG+ E+++ L ++ + D
Sbjct: 194 SDVWSFGIVMWEVMTYGERPYWELSNHEVMKA--------------INDGFRLPTPMDCP 239
Query: 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679
+ + + C Q RP + +V++L I
Sbjct: 240 SAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.0 bits (160), Expect = 2e-12
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 18/132 (13%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF S + Y + + ++ PE T ++DV+++GV EI S
Sbjct: 183 DFGLSRNIYSADYYKADGNDAIPI----RWMPPESIFYNRYTTESDVWAYGVVLWEIFSY 238
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
+ E++ + D + + L + + LC P
Sbjct: 239 GLQPYYGMAHEEVIYY--------------VRDGNILACPENCPLELYNLMRLCWSKLPA 284
Query: 662 MRPPMSRVVAML 673
RP + +L
Sbjct: 285 DRPSFCSIHRIL 296
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 4e-12
Identities = 22/144 (15%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEY------AMRGHLTEKADVFSFGVAA 595
D + + + + Y+APE ++AD+++ G+
Sbjct: 151 DLGLAVRHDSATDTIDIAPNHRVGTK--RYMAPEVLDDSINMKHFESFKRADIYAMGLVF 208
Query: 596 LEIISGRANSDNSLDMEKIY----LLEWAWNLHENNQSLGLVDPTLTE-FNDKEALR-VI 649
EI + D + Y + + + P + + EALR +
Sbjct: 209 WEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMA 268
Query: 650 GVALLCTQASPMMRPPMSRVVAML 673
+ C A+ R R+ L
Sbjct: 269 KIMRECWYANGAARLTALRIKKTL 292
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (151), Expect = 3e-11
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 23/141 (16%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFG 592
D N K+ + G TQ + APE + K+DV+SFG
Sbjct: 128 DLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFG 187
Query: 593 VAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVA 652
+ EI S + ++ + E + D + V
Sbjct: 188 ILLWEIYSFGRVPYPRIPLKDVV------PRVEKGYKMDAPDGCPPAVYE--------VM 233
Query: 653 LLCTQASPMMRPPMSRVVAML 673
C MRP ++ L
Sbjct: 234 KNCWHLDAAMRPSFLQLREQL 254
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 6e-11
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
+++PE G T +DV+SFGV EI + L E++
Sbjct: 199 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRF----------- 247
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 680
+++ L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 248 ---VMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 296
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 41/190 (21%), Positives = 60/190 (31%), Gaps = 6/190 (3%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 72
++P +L K+ T+L N + +L QL L+ A L +
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVL 79
Query: 73 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS 132
TL S N +L L L L + +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 133 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 192
+ L LSL N +T + L+NL TL L N+L IP+ F L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Query: 193 NYLFLGNNSL 202
+ FL N
Sbjct: 198 PFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-06
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 3/129 (2%)
Query: 140 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199
+ + +++ +T ++P + ++ L LS N L TL L L L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 200 NSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLH 259
L+ L +DLS+N L T L + + GL
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 260 CLQRNFPCN 268
LQ +
Sbjct: 125 ELQELYLKG 133
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 2e-10
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQ 628
+ APE G T K+DV+SFG+ EI++ GR + E I LE + +
Sbjct: 175 KWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRM----- 229
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
D + + LC + P RP + ++L
Sbjct: 230 ----------VRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVL 264
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.9 bits (142), Expect = 4e-10
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS- 600
DF S + + Y + PE M + K+D+++FGV EI S
Sbjct: 143 DFGLSRYVLDDEY---TSSVGSKFP--VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 197
Query: 601 GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASP 660
G+ + + E + L + +V + C
Sbjct: 198 GKMPYERFTNSETAEHIAQGLRL---------------YRPHLASEKVYTIMYSCWHEKA 242
Query: 661 MMRPPMSRVVAML 673
RP +++ +
Sbjct: 243 DERPTFKILLSNI 255
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 4e-10
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
+ APE + K+DV+SFGV E S + ++ + E +
Sbjct: 175 KWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVT------AMLEKGER 228
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+G E D + LC RP + V L
Sbjct: 229 MGCPAGCPREMYD--------LMNLCWTYDVENRPGFAAVELRL 264
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (142), Expect = 5e-10
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 11/153 (7%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQL-MLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS 600
DF + K + + L+ Y + + + + D+ S G +
Sbjct: 149 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNL 208
Query: 601 GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASP 660
G K E + + L + E + C
Sbjct: 209 GSLPWQGLKAATKRQKYERIS-----EKKMSTPIEVLCKGYPSEFATYL---NFCRSLRF 260
Query: 661 MMRPPMSRVVAMLAGDIEVGKVISKPSYLTDWD 693
+P S + + + Y+ DW+
Sbjct: 261 DDKPDYSYLRQLFRNLFH--RQGFSYDYVFDWN 291
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (141), Expect = 6e-10
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS- 600
DF S L + P Y + APE T +DV+S+G+ E++S
Sbjct: 171 DFGLSRFLEDDTSDPTYTSALGGKIPI-RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSY 229
Query: 601 GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASP 660
G + + + I +E + L + + L C Q
Sbjct: 230 GERPYWDMTNQDVINAIEQDYRL---------------PPPMDCPSALHQLMLDCWQKDR 274
Query: 661 MMRPPMSRVVAML 673
RP ++V L
Sbjct: 275 NHRPKFGQIVNTL 287
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.4 bits (104), Expect = 3e-05
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 9/39 (23%)
Query: 530 TFSYAELRSATQDFDPS---------NKLGEGGYGPVYK 559
F++ + A ++F +G G +G V
Sbjct: 6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCS 44
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (140), Expect = 8e-10
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 19/132 (14%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF S + Y + APE + K+DV++FGV EI +
Sbjct: 158 DFGLSRLMTGDTY-----TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATY 212
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
+ +D+ ++Y L E + + E + +V + C Q +P
Sbjct: 213 GMSPYPGIDLSQVY------ELLEKDYRM--------ERPEGCPEKVYELMRACWQWNPS 258
Query: 662 MRPPMSRVVAML 673
RP + +
Sbjct: 259 DRPSFAEIHQAF 270
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 1e-09
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 29/146 (19%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFH----GYLAPEYAMRGHLTEKADV 588
D +N K+ + G + + + + APE A+ G T K+DV
Sbjct: 138 DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDV 197
Query: 589 FSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647
+SFG+ E+ + GR ++ E + +E + + +
Sbjct: 198 WSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM---------------PCPPECPES 242
Query: 648 VIGVALLCTQASPMMRPPMSRVVAML 673
+ + C + P RP + A L
Sbjct: 243 LHDLMCQCWRKEPEERPTFEYLQAFL 268
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 2e-09
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++APE T ++DV+SFGV EI + + + +E+++ L
Sbjct: 202 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKL------------ 249
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
L + + + + C A P RP ++V L
Sbjct: 250 --LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 291
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-09
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++APE T ++DV+S+G+ E+ S ++ + ++ + + +
Sbjct: 212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD-----SKFYKMIKEGFR 266
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678
+ + + + C A P+ RP ++V ++ I
Sbjct: 267 M--------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (133), Expect = 6e-09
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++APE E DV++FG+ LE+ + + +IY +
Sbjct: 178 EFMAPEM-YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY----------RRVT 226
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVV 670
G+ + + E +I C + + R + ++
Sbjct: 227 SGVKPASFDKVAIPEVKEII---EGCIRQNKDERYSIKDLL 264
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.0 bits (133), Expect = 6e-09
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHL 224
+L+ L++S N L ++P L L N L+ +P + +NL+ + + YN L
Sbjct: 283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVP-ELPQNLKQLHVEYNPL 336
Query: 225 SGPFPSWVTS--NLQMN 239
FP S +L+MN
Sbjct: 337 RE-FPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 10/133 (7%)
Query: 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 201
+ +L L N ++ S+P +L++L S N+LT ++P SL L + NN+
Sbjct: 38 RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89
Query: 202 LSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCL 261
L L+ + +S N L +S L++ V NN ++
Sbjct: 90 LKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147
Query: 262 QRNFPCNRNAPRY 274
N +
Sbjct: 148 GNNQLEELPELQN 160
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 8e-05
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 101 FQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160
+ N+ I S SL+ L +S N L L L + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVS--NNKLIELP--ALPPRLERLIASFNHLA-EVPE 321
Query: 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLN 193
QNL+ L + +N L + P ++ L
Sbjct: 322 ---LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.002
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 173 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWV 232
N + +I SL L + NN L LP L+ + S+NHL+ P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-RLERLIASFNHLAE-VPELP 323
Query: 233 TSNLQMNLVANNFT 246
+ Q+++ N
Sbjct: 324 QNLKQLHVEYNPLR 337
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (133), Expect = 7e-09
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++A E T +DV+S+GV EI+S + ++Y L +
Sbjct: 191 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY-----EKLPQG--- 242
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
D E ++ C + P RP ++++ L
Sbjct: 243 ---YRLEKPLNCDDEVYDLM---RQCWREKPYERPSFAQILVSL 280
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (133), Expect = 8e-09
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++A E + T ++DV+S+GV E+++ + + + +I ++ E +
Sbjct: 178 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEIS------SILEKGER 231
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
L + V + + C RP ++
Sbjct: 232 L--------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF 267
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 2e-08
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQ 628
+ APE + ++DV+S+GV E +S G+ E + +E +
Sbjct: 177 KWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRM----- 231
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
E + + + C RP V +
Sbjct: 232 ----------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM 266
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 3e-08
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
+ APE + +D + FGV E+ + L+ +I + + +
Sbjct: 178 FAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQIL-----HKIDKEGE 232
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
L + + V + C P RP + L
Sbjct: 233 RL--------PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL 269
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 4e-08
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
++APE T ++DV+SFGV EI S A+ + ++ E +
Sbjct: 201 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-----EEFCRRLKEGTR 255
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 673
+ D T E L C P RP S +V L
Sbjct: 256 MRAPDYTTPEMYQ--------TMLDCWHGEPSQRPTFSELVEHL 291
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 7e-08
Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 525 DSKP-NTFSYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLT 583
D N DF + + V +L + ++APE G T
Sbjct: 189 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPV----KWMAPESLFEGIYT 244
Query: 584 EKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643
K+DV+S+G+ EI S N + ++ + + L +N + +
Sbjct: 245 IKSDVWSYGILLWEIFSLGVNPYPGIPVDANF-----YKLIQNGFKM--------DQPFY 291
Query: 644 EALRVIGVALLCTQASPMMRPPMSRVVAMLA 674
+ + C RP + + L
Sbjct: 292 ATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 2e-07
Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF S + + Y YK ++ L ++APE T +DV+ FGV EI+
Sbjct: 151 DFGLSRYMEDSTY---YKASKGKLP--IKWMAPESINFRRFTSASDVWMFGVCMWEILMH 205
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
+ + EN + + ++ C P
Sbjct: 206 GVKPFQGVKNNDVI------GRIENGE-----RLPMPPNCPPTLYSLM---TKCWAYDPS 251
Query: 662 MRPPMSRVVAML 673
RP + + A L
Sbjct: 252 RRPRFTELKAQL 263
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (121), Expect = 2e-07
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 27/141 (19%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFH---GYLAPEYAMRGHLTEKADVF 589
D P+N KLG+ G + F Y++PE R EK+D++
Sbjct: 139 DLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIW 198
Query: 590 SFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649
S G E+ + E + + E +I
Sbjct: 199 SLGCLLYELCALMPPFTAFSQKELAGKIREGK------------FRRIPYRYSDELNEII 246
Query: 650 GVALLCTQASPMMRPPMSRVV 670
RP + ++
Sbjct: 247 ---TRMLNLKDYHRPSVEEIL 264
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (121), Expect = 3e-07
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 142 KNLTDLSLRNALITG----SIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-----NIGSL 192
L L L + ++ S+ + + +L+ LDLS N L L L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 193 NYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225
L L + S + + LQ ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDR----LQALEKDKPSLR 457
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 5e-07
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 167 NLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNNSLSGTLPT------QKSENLQNIDL 219
++Q+LD+ L+ L + + L + L+ + + L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 220 SYNHLSGPFPSWVTSNLQMN 239
N L V LQ
Sbjct: 63 RSNELGDVGVHCVLQGLQTP 82
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 4e-06
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 120 LDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITG----SIPSGIGELQNLQTLDLSF 175
+ +SD + + + L+ + L + +T I S + L L+L
Sbjct: 9 IQCEELSD----ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 176 NNLTGQIPRTLFNIGSLNYLFLGNNSLSG 204
N L + + SL
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 25/122 (20%)
Query: 70 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIY 129
+ DA + L+ L SSL+
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT------------ 392
Query: 130 NVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE-----LQNLQTLDLSFNNLTGQIPR 184
+++ +L +L L N + + + E L+ L L + ++
Sbjct: 393 --------LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444
Query: 185 TL 186
L
Sbjct: 445 RL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 96 LKSLRFQGNSFQ-GPIPSSLSKLASLDSLRISDIY----NVSSSLDFVMSLKNLTDLSLR 150
++SL Q L L +R+ D + L +L+LR
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 151 NALITGSIPSGIGEL-----QNLQTLDLSFNN 177
+ + + + +Q L L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 3e-07
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 5/114 (4%)
Query: 86 IPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLT 145
+ + + L N + P+ L+ L L+ L+ SD + +
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQEL 70
Query: 146 DLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ---IPRTLFNIGSLNYLF 196
L N L + + L L+L N+L + R + S++ +
Sbjct: 71 LLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.6 bits (102), Expect = 9e-06
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 3 LSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI 62
L +AH + V L L +T L +N PP + L LE L + E
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLE--VLQASDNALEN 57
Query: 63 PSTYAKLRNMQTLWASDAPFTG-KIPDFIGNWTKLKSLRFQGNSF---QGPIPSSLSKLA 118
A L +Q L + + + +L L QGNS +G L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 119 SLDSL 123
S+ S+
Sbjct: 118 SVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.0 bits (98), Expect = 3e-05
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 147 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLN------------- 193
L L + +T + + +L + LDLS N L P L + L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59
Query: 194 ---------YLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSG--PFPSWVTSNL 236
L L NN L + Q L ++L N L + L
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT-QKSENLQNIDLSYNHLSGP 227
+ L L+ +LT + L + + +L L +N L P L+ + S N L
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 228 FPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
LQ L+ NN + I L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 93
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 50.6 bits (120), Expect = 3e-07
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 10/124 (8%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
Y++ + + + D+ + G + + G E + E QS
Sbjct: 178 RYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYER---IGEKKQS 234
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVISKPSYL 689
L L +E + + + P + + + +E
Sbjct: 235 TPL--RELCAGFPEEFYKYM---HYARNLAFDATPDYDYLQGLFSKVLERLNT--TEDEN 287
Query: 690 TDWD 693
DW+
Sbjct: 288 FDWN 291
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 4e-07
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
Y++PE H + ++D++S G++ +E+ GR + + +
Sbjct: 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR----------------YPIPPPDAKE 210
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVISKPSY 688
+ + + R + RPPM+ + L I PS
Sbjct: 211 LELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMA--IFELLDYIVNEPPPKLPSG 268
Query: 689 LTDWDFKDITASFLNED 705
+ +F+D L ++
Sbjct: 269 VFSLEFQDFVNKCLIKN 285
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (117), Expect = 7e-07
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
YL PE EK D++S GV E + G+ + + E +
Sbjct: 169 DYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISR---------- 218
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVV 670
V+ T +F + A +I + +P RP + V+
Sbjct: 219 ---VEFTFPDFVTEGARDLI---SRLLKHNPSQRPMLREVL 253
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (114), Expect = 2e-06
Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVF 589
D N KL + G+ Q S G ++APE R K D++
Sbjct: 141 DIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIW 200
Query: 590 SFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVI 649
S G+ A+E+I G N + +Y + G + E +
Sbjct: 201 SLGIMAIEMIEGEPPYLNENPLRALY----------LIATNGTPELQNPEKLSAIFRDFL 250
Query: 650 GVALLCTQASPMMRPPMSRV 669
C R +
Sbjct: 251 ---NRCLDMDVEKRGSAKEL 267
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 15/227 (6%)
Query: 3 LSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQL--------YL 53
+ ++++V ++ L +L LS S + + + L +L
Sbjct: 51 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 110
Query: 54 NSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSS 113
+ S +L ++ + T+L ++ N + + +
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170
Query: 114 LSKLASLDSLRISDIYNVSSSLDFVMSLKN-LTDLSLRN-ALITGSIPSGIGELQNLQTL 171
+ + +L L +SD + + N L LSL I +GE+ L+TL
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230
Query: 172 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG-TLPTQKSENLQNI 217
+ G + +L +L + + + PT ++ Q I
Sbjct: 231 QVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 75 LWAS-DAPFTGKIPDFIGNWTK--LKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131
LW + D PD G + + R + P+ S + + +S+
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIE 59
Query: 132 SSSL-DFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLD 172
S+L + L +LSL ++ I + + + NL L+
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 7e-05
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 169 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-KSENLQNIDLSYNHLSGP 227
QTLDL+ NL + L + G + + + L +Q++DLS + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 228 FPSWVTSNLQ----MNLVANNFTFDR-SNISVFPGLHCLQRNFPCNRNAPRYANFSIKC 281
+ S ++L + + ++ L L + + C
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 4/130 (3%)
Query: 142 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLGNN 200
+ + + + + + +Q +DLS + + + L L L
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81
Query: 201 SLSGTLPTQ--KSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGL 258
LS + K+ NL ++LS F + L N ++ +
Sbjct: 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 259 HCLQRNFPCN 268
+
Sbjct: 142 AVAHVSETIT 151
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 7/168 (4%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
+PR++ T L +N + G L L +L L G P+ + +
Sbjct: 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131
+Q L + +LK+L N +P S L SL SL ++
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Query: 132 SSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
+ + L SL PS +++++Q DL +
Sbjct: 140 CNC-HLAWFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFK 183
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (109), Expect = 6e-06
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 570 GYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
Y+APE R E DV+S G+ +++G D D + Y + E
Sbjct: 170 PYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYS-----DWKEKKT 224
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRV 669
L D L ++ +P R + +
Sbjct: 225 YLNPWKKI-----DSAPLALL---HKILVENPSARITIPDI 257
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 8e-06
Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 13/139 (9%)
Query: 149 LRNALITGSIPSGIGE------LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 202
L + IT +P+ I + +L ++T + + + S++ + N+ +
Sbjct: 3 LGSETIT--VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 58
Query: 203 SGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 262
Q N+ + L+ N L+ +NL+ ++S L L+
Sbjct: 59 KSVQGIQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115
Query: 263 RNFPCNRNAPRYANFSIKC 281
+
Sbjct: 116 SLSLEHNGISDINGLVHLP 134
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 14/180 (7%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
L + + N++ I L + +L+LN P A L+N+ L+ +
Sbjct: 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM 139
K SL G S + + N + + +
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP------QLESLYLGNNKITDITVLS 153
Query: 140 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199
L L LSL + I+ +P + L LQ L LS N+++ R L + +L+ L L +
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 20/215 (9%)
Query: 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79
L ++ G +N + T+ +L + L +G G L N+ L D
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSA--FGTGVTTIEGVQYLNNLIGLELKD 72
Query: 80 APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVM 139
T P L I S + + L +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 140 SLKNLTDLSLRNALITG--------------SIPSGIGELQNLQTLDLSFNNLTGQIPRT 185
L + + + G S + + L L TL N ++ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 186 LFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 220
L ++ +L + L NN +S P + NL + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.003
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 87 PDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTD 146
+ N +KL +L+ N P L+ L +L + + N S + + + NL
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK--NNQISDVSPLANTSNLFI 221
Query: 147 LSLRN 151
++L N
Sbjct: 222 VTLTN 226
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
YL+PE A + ++DV+S G E+++G + Y ++ E+
Sbjct: 178 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQ-----HVREDPI 232
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671
L+ + V+ L +P R + +
Sbjct: 233 PPSARHEGLSA----DLDAVV---LKALAKNPENRYQTAAEMR 268
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 5e-05
Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 18/196 (9%)
Query: 1 MLLSVAHNVFSGSVPR-ELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAG 59
M + + +V + +L + L G + G + L L Q+ ++
Sbjct: 21 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLT 75
Query: 60 GEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLAS 119
P + + + + + ++L++L
Sbjct: 76 DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL-- 133
Query: 120 LDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179
N S + + L +L L+ + +T P + L L+ LD+S N ++
Sbjct: 134 ------ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 185
Query: 180 GQIPRTLFNIGSLNYL 195
L + +L L
Sbjct: 186 D--ISVLAKLTNLESL 199
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.1 bits (101), Expect = 8e-05
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 27/142 (19%)
Query: 541 QDFDPSN---------KLGEGGYGPVYKKTQLMLSNFHGYLAPEYAM---RGHLTEKADV 588
+D N KLG+ G + + ++APE + G K DV
Sbjct: 139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTP-YWMAPEVILAMDEGQYDGKVDV 197
Query: 589 FSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648
+S G+ +E+ + N M +Y N+S L +E
Sbjct: 198 WSLGITCIELAERKPPLFNMNAMSALY-------HIAQNESPALQSGHWSE----YFRNF 246
Query: 649 IGVALLCTQASPMMRPPMSRVV 670
+ C Q P RP ++
Sbjct: 247 V---DSCLQKIPQDRPTSEVLL 265
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (98), Expect = 9e-05
Identities = 25/224 (11%), Positives = 49/224 (21%), Gaps = 33/224 (14%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS-------- 64
+P +L + L F LE++ ++ I +
Sbjct: 22 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79
Query: 65 ----TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS----------------LRFQGN 104
K N+ + + + + T +K ++ N
Sbjct: 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139
Query: 105 SFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164
S + L ++ + N +
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPT 208
LD+S + L N+ L N LPT
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.8 bits (100), Expect = 9e-05
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFG 592
D P N K+ + G+ L Y+APE + D +SFG
Sbjct: 129 DLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFG 188
Query: 593 VAALEIISGR 602
+ E+++G
Sbjct: 189 ILIYEMLAGY 198
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 42.0 bits (98), Expect = 2e-04
Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 18/192 (9%)
Query: 540 TQDFDPSNKLGEGGYGPVYKKTQLMLS--NFHGYLAPEYAMRGHLTEKADVFSFGVAALE 597
T KL + G Q + + APE A + D++S GV +
Sbjct: 158 TTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYI 217
Query: 598 IISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQ 657
++SG + D E + ++ +D + ++ I
Sbjct: 218 LLSGLSPFGGENDDETLRNVK---------SCDWNMDDSAFSGISEDGKDFI---RKLLL 265
Query: 658 ASPMMRPPMSRVVAM--LAGDIEVGKVISKPSYLTDWDFKDITASFLNEDTPTPSSSIKR 715
A P R + + + L G+ PS I + + P P + R
Sbjct: 266 ADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIKTKY--DAWPEPLPPLGR 323
Query: 716 SNSKEKSERENP 727
++ + P
Sbjct: 324 ISNYSSLRKHRP 335
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 2e-04
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 525 DSKP-NTFSYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLT 583
D KP N ++ DF + L Y++PE
Sbjct: 133 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARAN----SFVGTAQYVSPELLTEKSAC 188
Query: 584 EKADVFSFGVAALEIISGR 602
+ +D+++ G ++++G
Sbjct: 189 KSSDLWALGCIIYQLVAGL 207
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 2/96 (2%)
Query: 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRN 71
L + LT L N L L +L L + G P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 72 MQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ 107
+ L S + L+ L GN
Sbjct: 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 3e-04
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 30/145 (20%)
Query: 542 DFDPSN---------KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAM-----RGHLTE 584
D N KL + G +T +F G ++APE M
Sbjct: 135 DLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDY 194
Query: 585 KADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKE 644
KADV+S G+ +E+ M + ++ L P
Sbjct: 195 KADVWSLGITLIEMAEIEPPHHELNPMRVLL-------KIAKSEPPTLAQP---SRWSSN 244
Query: 645 ALRVIGVALLCTQASPMMRPPMSRV 669
+ C + + R S++
Sbjct: 245 FKDFL---KKCLEKNVDARWTTSQL 266
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 112 SSLSKLASLDSLRISDIYNVSSSLDFVMS-----LKNLTDLSLRNALITG--SIPSGIGE 164
L L + I + N SS+ + + L L+L N + + S + +
Sbjct: 30 KGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK 89
Query: 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS 211
NL+ L+LS N L + L L+L NSLS T Q +
Sbjct: 90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 40.8 bits (95), Expect = 4e-04
Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 34/193 (17%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF + KL V T + APE R + D+++ GV ++SG
Sbjct: 172 DFGLATKLNPDEIVKVTTAT-------AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 224
Query: 602 R---ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQA 658
A D+ ++ + +W ++ + V P +F Q
Sbjct: 225 LSPFAGEDDLETLQNVKRCDWEFDEDAFSS----VSPEAKDFIKN-----------LLQK 269
Query: 659 SPMMRPPMSRVVAM--LAGDIEVGKVISKPSYLTDWDFKDITASFLN--EDTPTPSSSIK 714
P R + + L GD + S + + I D P P +I
Sbjct: 270 EPRKRLTVHDALEHPWLKGDHS-----NLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIG 324
Query: 715 RSNSKEKSERENP 727
R + + P
Sbjct: 325 RIANFSSLRKHRP 337
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 6e-04
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 19/128 (14%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF ++K+ G T ++APE L +AD++S GV ++SG
Sbjct: 160 DFGLAHKIDFGNEFKNIFGT-------PEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
+ E + + A N ++ +F + P
Sbjct: 213 ASPFLGDTKQETLANVS-AVNYEFEDEYFSNTSALAKDFIRR-----------LLVKDPK 260
Query: 662 MRPPMSRV 669
R +
Sbjct: 261 KRMTIQDS 268
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 8e-04
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL----------EW 619
Y APE ++ D++S G E+ + S D++++ + +W
Sbjct: 180 WYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW 239
Query: 620 AWNLHENNQSLGLVDPT-LTEFNDKEALRVIGVALLCTQASPMMRPPMSRV 669
++ Q+ + +F + L C +P R
Sbjct: 240 PRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 0.001
Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 19/191 (9%)
Query: 542 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISG 601
DF + + T Y+APE + D++S GV ++ G
Sbjct: 157 DFGFAKETTSHNSLTTPCYT-------PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 209
Query: 602 RANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPM 661
++ + ++ + + +P +E +E +I + P
Sbjct: 210 YPPFYSNHGLAISPGMKTRIRMGQYE----FPNPEWSEV-SEEVKMLI---RNLLKTEPT 261
Query: 662 MRPPMSRVVA----MLAGDIEVGKVISKPSYLTDWDFKDITASFLNEDTPTPSSSIKRSN 717
R ++ + M + + + + D + + + T ++
Sbjct: 262 QRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMRVDYEQIK 321
Query: 718 SKEKSERENPV 728
K+ + NP+
Sbjct: 322 IKKIEDASNPL 332
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 0.002
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 34/168 (20%)
Query: 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 628
Y+APE + D +SFGV E++ G+ + E
Sbjct: 167 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ-------------SPFHGQDEEELFH 213
Query: 629 SLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVGKVISKPSY 688
S+ + +P + +KEA ++ + P R + GDI + +
Sbjct: 214 SIRMDNPFYPRWLEKEAKDLL---VKLFVREPEKRLGV-------RGDIRQHPLFRE--- 260
Query: 689 LTDWDF---KDITASFLNEDTPTPSSSIKRSNSKEKSERENPVDDHSE 733
+W+ K+I F P S SN ++ E P ++
Sbjct: 261 -INWEELERKEIDPPF----RPKVKSPFDCSNFDKEFLNEKPRLSFAD 303
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.003
Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 10/165 (6%)
Query: 143 NLTDLSLRNALITG----SIPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNY 194
++ SL+ IT S+ + + E +++ + LS N + + + + + L
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 195 LFLGNNSLS--GTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNI 252
+ + L L L S +F + +
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 253 SVFPGLHCLQRNFPCNRNAPRYANFSIKCGGKQMRADNIVYEADN 297
+ + A ++ K + N
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.004
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 163 GELQNLQTLDLSFNNLTGQIPRTLF-----NIGSLNYLFLGNNSLS 203
E LQTL L +N + RTL + L +L L N S
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.7 bits (87), Expect = 0.004
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 629
GY+APE + ++ D +S GV A ++ G + D + +
Sbjct: 174 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQIL--------KAE 225
Query: 630 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAM--LAGDIEVGKVISKP 686
P + +D A I + P R + + +AGD + K I +
Sbjct: 226 YEFDSPYWDDISD-SAKDFI---RHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQS 280
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.004
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Query: 141 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 200
+L LR I I + L +D S N + L +
Sbjct: 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI 75
Query: 201 SLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMN 239
G Q +L + L+ N L ++L+
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 114
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 755 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.85 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.82 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.81 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.8 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.79 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.78 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.76 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.76 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.75 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.74 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.74 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.74 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.73 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.73 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.71 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.71 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.71 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.7 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.7 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.69 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.68 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.67 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.67 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.66 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.61 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.61 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.6 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.6 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.6 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.59 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.59 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.58 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.58 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.56 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.56 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.55 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.55 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.54 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.53 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.53 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.52 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.51 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.51 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.5 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.5 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.5 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.47 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.47 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.45 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.45 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.45 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.44 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.42 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.41 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.39 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.38 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.38 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.36 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.34 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.34 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.34 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.33 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.33 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.27 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.19 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.18 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.14 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.14 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.09 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.31 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.07 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.61 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.45 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.92 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.66 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=7.3e-28 Score=252.98 Aligned_cols=245 Identities=27% Similarity=0.383 Sum_probs=220.6
Q ss_pred eEEecCCcCcC--CCchhhcCCCCCCEEEccC-ccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEcc
Q 004413 2 LLSVAHNVFSG--SVPRELGNLKELTVLSFGN-NNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWAS 78 (755)
Q Consensus 2 ~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 78 (755)
.|+|++|+++| .+|..|++|++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.++++
T Consensus 54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~ 133 (313)
T d1ogqa_ 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence 58999999998 4789999999999999986 88999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCC-CeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCC
Q 004413 79 DAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL-DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGS 157 (755)
Q Consensus 79 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 157 (755)
+|.+.+.+|..+.++++|+++++++|.+.+.+|..+..+..+ +.+++++|.+....+..+..+..+ .+++.++.+.+.
T Consensus 134 ~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~ 212 (313)
T d1ogqa_ 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGD 212 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEEC
T ss_pred cccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 999999999999999999999999999999999999998886 889999998887777777777554 799999999999
Q ss_pred CCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc-c
Q 004413 158 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT-S 234 (755)
Q Consensus 158 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~-~ 234 (755)
+|..+..+++|+.|++++|.+.+.++ .+..+++|+.|+|++|+++|.+|..+ +++|++|||++|+|+|.+|.... +
T Consensus 213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~ 291 (313)
T d1ogqa_ 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG
T ss_pred cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCC
Confidence 99999999999999999999997654 68889999999999999999999865 48999999999999999997533 3
Q ss_pred cc-cccccccccccC
Q 004413 235 NL-QMNLVANNFTFD 248 (755)
Q Consensus 235 ~~-~l~l~~n~~~~~ 248 (755)
.+ .+++.+|++.++
T Consensus 292 ~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 292 RFDVSAYANNKCLCG 306 (313)
T ss_dssp GSCGGGTCSSSEEES
T ss_pred CCCHHHhCCCccccC
Confidence 33 578888986554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.92 E-value=4.7e-26 Score=239.02 Aligned_cols=228 Identities=24% Similarity=0.386 Sum_probs=207.7
Q ss_pred CeEEecC-CcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAH-NVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 79 (755)
++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+.++++|+.+++++
T Consensus 79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~ 158 (313)
T d1ogqa_ 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccc
Confidence 5899997 899999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhcCCCCC-cEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC
Q 004413 80 APFTGKIPDFIGNWTKL-KSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI 158 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 158 (755)
|.+.+.+|..+..+.++ +.+++++|++++..|..+..+..+ .+++..+......+..+..+++|+.+++++|.+.+.+
T Consensus 159 n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 237 (313)
T d1ogqa_ 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998886 899999999999999888877655 6899888877777888889999999999999999776
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcc-cCCCCCEEEeecCc-CCCC-Ccc
Q 004413 159 PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ-KSENLQNIDLSYNH-LSGP-FPS 230 (755)
Q Consensus 159 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~L~~L~Ls~N~-l~g~-ip~ 230 (755)
+ .+..+++|+.|+|++|+++|.+|..+..+++|+.|+|++|+|+|.+|.. .+++|+.+++++|+ +.|. +|.
T Consensus 238 ~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~ 311 (313)
T d1ogqa_ 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCC
Confidence 5 6888999999999999999999999999999999999999999998864 34789999999997 5664 553
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-23 Score=215.94 Aligned_cols=225 Identities=21% Similarity=0.183 Sum_probs=195.3
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEcc-CC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWAS-DA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n 80 (755)
+++.++++++ .+|..+. +.+++|+|++|+|+...+..|.++++|++|++++|.+....+..+..+..++.+... .|
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 4566777777 6777665 578999999999986666789999999999999999988888888889999998775 45
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
.++...+..|.++++|++|++++|.+....+..+..+.+|+.+++++|.+.......+..+++|+.|++++|.++...+.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence 56666678899999999999999999877777888899999999999999888888889999999999999999988888
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCc
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFP 229 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip 229 (755)
.|..+++|+.|++++|++++..|..|..+++|+.|++++|.+.+..+..+ .++|++|+|++|++.+.-+
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~ 242 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence 99999999999999999998889999999999999999999997666543 4789999999999987654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.7e-22 Score=203.95 Aligned_cols=221 Identities=18% Similarity=0.209 Sum_probs=180.6
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEcc-C
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ-G 103 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~ 103 (755)
..++.+++.++ .+|..+. .++++|+|++|+|+...+..|.++++|++|++++|++....+..+.++..++.+... .
T Consensus 14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 34677787777 6776654 578899999999976666788999999999999999887777778888888888765 5
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|.++...+..|.++++|++|++++|.+.......+..+.+|+.+++++|.+++..+..|..+++|+.|++++|++++..+
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~ 170 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence 56766667788889999999999888877777778888899999999999987777788888999999999999987777
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCCCCCccccc---ccccccccccccccC
Q 004413 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSGPFPSWVT---SNLQMNLVANNFTFD 248 (755)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~g~ip~~~~---~~~~l~l~~n~~~~~ 248 (755)
..+..+++|+.+++++|++++..|..+. ++|++||+++|.+++..|..+. ....+++++|++.++
T Consensus 171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence 8888899999999999999877776543 7899999999999887777765 234688899988876
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.2e-21 Score=197.96 Aligned_cols=201 Identities=23% Similarity=0.200 Sum_probs=158.7
Q ss_pred cCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 004413 19 GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 98 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 98 (755)
.+...+..++.+++.++ .+|..+. ++|++|+|++|.|++..+..|.++++|++|+|++|+++ .++ .++.+++|++
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~ 81 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT 81 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence 34556667788888887 5676554 57888888888887665667888888888888888887 444 3567888888
Q ss_pred EEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCC
Q 004413 99 LRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNL 178 (755)
Q Consensus 99 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 178 (755)
|+|++|+++ ..+..+..+++|+.|++++|.+.......+..+.+++.|++++|.++...+..+..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 888888887 4566778888888888888887777777778888888888888888877777778888899999999999
Q ss_pred CCCCcccccCCCCCCEEEccCCcCCCCCCcccC--CCCCEEEeecCcCCC
Q 004413 179 TGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKS--ENLQNIDLSYNHLSG 226 (755)
Q Consensus 179 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~g 226 (755)
++..+..+..+++|+.|+|++|+|+ .+|.... ++|+.|+|++|++..
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence 8777777888889999999999988 5665443 788999999998864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4e-21 Score=195.98 Aligned_cols=195 Identities=22% Similarity=0.222 Sum_probs=171.8
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.+|.++++|+ .+|+.|. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+. +| .+..+++|++|+|++|+
T Consensus 14 ~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~ 88 (266)
T d1p9ag_ 14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQ 88 (266)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSC
T ss_pred EEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccc
Confidence 3578888898 5787665 589999999999986666789999999999999999864 33 46789999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcc
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSG 161 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 161 (755)
++ ..+..+.++++|+.|++++|.+....+..+..+.+++.|++++|.+.......+..+++|+.|++++|++++..+..
T Consensus 89 l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~ 167 (266)
T d1p9ag_ 89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (266)
T ss_dssp CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred cc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence 98 45678889999999999999998777888889999999999999988888888889999999999999999888888
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCC
Q 004413 162 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 203 (755)
Q Consensus 162 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (755)
|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+.
T Consensus 168 ~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 999999999999999999 78888889999999999999876
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=3.1e-20 Score=193.41 Aligned_cols=239 Identities=25% Similarity=0.303 Sum_probs=136.0
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
+|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|.. ....|..|++.+|.
T Consensus 35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~ 111 (305)
T d1xkua_ 35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRVHENE 111 (305)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEECCSSC
T ss_pred EEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhccccc
Confidence 34444444443333344444444444444444443334444444444444444444432 2221 12334444444444
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCC--CCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQ--GPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
+.+..+..+.....++.++...|... ...+..+..+++|+.+++.+|.+...... .+++|+.|++++|.++...+
T Consensus 112 l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~ 188 (305)
T d1xkua_ 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDA 188 (305)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECT
T ss_pred hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc---cCCccCEEECCCCcCCCCCh
Confidence 44333333444444555555444322 22234456677777777777766544322 34677888888888777777
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccc-cc---
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSW-VT--- 233 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~-~~--- 233 (755)
..+..++.++.|++++|.+++..+..+.++++|+.|+|++|.|+. +|..+ .++|++|+|++|+|+. ++.. +.
T Consensus 189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~ 266 (305)
T d1xkua_ 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPG 266 (305)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSS
T ss_pred hHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCc-cChhhccCcc
Confidence 778888888888888888887667777788888888888888874 44433 3788888888888873 3321 11
Q ss_pred ------ccccccccccccccC
Q 004413 234 ------SNLQMNLVANNFTFD 248 (755)
Q Consensus 234 ------~~~~l~l~~n~~~~~ 248 (755)
....|+|.+|++...
T Consensus 267 ~~~~~~~L~~L~L~~N~~~~~ 287 (305)
T d1xkua_ 267 YNTKKASYSGVSLFSNPVQYW 287 (305)
T ss_dssp CCTTSCCCSEEECCSSSSCGG
T ss_pred hhcccCCCCEEECCCCcCccC
Confidence 122467777776543
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=7.6e-22 Score=204.53 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=72.9
Q ss_pred cccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 570 GYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 570 gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.|||||++.++.++.|+|||||||+||||+| |+.|+......+ +...+ ..+... ..+.++...+
T Consensus 198 ~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~---~~~~i----~~~~~~--------~~~~~~~~~l 262 (299)
T d1jpaa_ 198 RWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQD---VINAI----EQDYRL--------PPPMDCPSAL 262 (299)
T ss_dssp GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHHHH----HTTCCC--------CCCTTCCHHH
T ss_pred cccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHH---HHHHH----HcCCCC--------CCCccchHHH
Confidence 5999999999999999999999999999998 899987654332 22222 222111 1122344567
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+++.+||+.+|++||||.||++.|+...+.
T Consensus 263 ~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~ 293 (299)
T d1jpaa_ 263 HQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN 293 (299)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999876554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.81 E-value=3.5e-19 Score=185.26 Aligned_cols=235 Identities=22% Similarity=0.285 Sum_probs=194.8
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP 81 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 81 (755)
.+|=++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 14 ~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~ 90 (305)
T d1xkua_ 14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90 (305)
T ss_dssp EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence 3455566777 6787665 689999999999986555689999999999999999998888899999999999999999
Q ss_pred CCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCC--CChhhhcCCCCCCEEEeeCccccCCCC
Q 004413 82 FTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVS--SSLDFVMSLKNLTDLSLRNALITGSIP 159 (755)
Q Consensus 82 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p 159 (755)
++ .+|..+ ...|+.|++.+|.+.+..+..+.....+..++...|.... .....+..+++|+.+++++|.+. .+|
T Consensus 91 l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~ 166 (305)
T d1xkua_ 91 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 166 (305)
T ss_dssp CS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred cC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccC
Confidence 98 566544 3689999999999997666677788888899888765433 23446788999999999999988 455
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc--CCCCCEEEeecCcCCCCCccccc--cc
Q 004413 160 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--SN 235 (755)
Q Consensus 160 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~L~~L~Ls~N~l~g~ip~~~~--~~ 235 (755)
..+ +++|+.|++++|..++..+..+..++.++.|++++|.+++..+..+ .++|++|+|++|+|+ .+|.++. +.
T Consensus 167 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~ 243 (305)
T d1xkua_ 167 QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243 (305)
T ss_dssp SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred ccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccC
Confidence 443 6899999999999998888999999999999999999997766544 489999999999998 6787766 33
Q ss_pred c-cccccccccc
Q 004413 236 L-QMNLVANNFT 246 (755)
Q Consensus 236 ~-~l~l~~n~~~ 246 (755)
+ .|++++|+++
T Consensus 244 L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 244 IQVVYLHNNNIS 255 (305)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCccC
Confidence 3 5899999876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.80 E-value=1.6e-18 Score=185.98 Aligned_cols=213 Identities=27% Similarity=0.347 Sum_probs=138.2
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|++++|+|+.. +.+..|++|++|+|++|+|++ +| .|.++++|++|++++|.+.+.. .+.++++|+.|++++|
T Consensus 47 ~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~ 120 (384)
T d2omza2 47 TTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNN 120 (384)
T ss_dssp CEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc--cccccccccccccccc
Confidence 4688888888743 457888899999999998884 44 3888899999999999887543 3778888888888877
Q ss_pred CCCCCcc---------------------------------------------------------------hhhcCCCCCc
Q 004413 81 PFTGKIP---------------------------------------------------------------DFIGNWTKLK 97 (755)
Q Consensus 81 ~l~~~~p---------------------------------------------------------------~~~~~l~~L~ 97 (755)
.+++..+ ..+..+++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (384)
T d2omza2 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200 (384)
T ss_dssp CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence 7653111 2344456677
Q ss_pred EEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCC
Q 004413 98 SLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNN 177 (755)
Q Consensus 98 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 177 (755)
.|++++|.+++..| +..+++|+.|++++|.+... +.+..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 201 ~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~ 274 (384)
T d2omza2 201 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274 (384)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred eeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcc
Confidence 77777777764433 34566777777777665442 345666777777777777764432 5666777777777776
Q ss_pred CCCCCc--------------------ccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCC
Q 004413 178 LTGQIP--------------------RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLS 225 (755)
Q Consensus 178 l~~~~p--------------------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~ 225 (755)
+++..+ ..+..+++++.|++++|++++..+...+++|+.|++++|+|+
T Consensus 275 l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~ 342 (384)
T d2omza2 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342 (384)
T ss_dssp CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC
Confidence 663211 123444555555555555554433334455555555555555
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.79 E-value=2.5e-18 Score=184.47 Aligned_cols=230 Identities=26% Similarity=0.342 Sum_probs=161.7
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCC------------------
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI------------------ 62 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------------ 62 (755)
++|+|++|+|++.. .|+++++|++|+|++|.+.+. + .+.++++|+.|++++|.+++..
T Consensus 69 ~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 144 (384)
T d2omza2 69 TQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 144 (384)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred CEEeCcCCcCCCCc--cccCCcccccccccccccccc-c-cccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999653 399999999999999999853 3 3889999999999887765311
Q ss_pred ---------------------------------------------chhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 004413 63 ---------------------------------------------PSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK 97 (755)
Q Consensus 63 ---------------------------------------------p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 97 (755)
...+..+++++.|++++|.+++..| +..+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~ 222 (384)
T d2omza2 145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLD 222 (384)
T ss_dssp CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCC
Confidence 1234455677777777777775443 34456677
Q ss_pred EEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCC-------------------
Q 004413 98 SLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSI------------------- 158 (755)
Q Consensus 98 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~------------------- 158 (755)
.|++++|.++. + ..+..+++|+.|++++|.+.... .+..+++|+.|++++|.+++..
T Consensus 223 ~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~ 298 (384)
T d2omza2 223 ELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298 (384)
T ss_dssp EEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS
T ss_pred EEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccc
Confidence 77777776663 2 34566666777777666554322 3555566666666666554321
Q ss_pred -CccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCccccc-c-c
Q 004413 159 -PSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVT-S-N 235 (755)
Q Consensus 159 -p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~-~-~ 235 (755)
...+..+++++.|++++|++++. + .+..+++|+.|++++|+|++......+++|++|++++|+|++.+| ... + .
T Consensus 299 ~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L 375 (384)
T d2omza2 299 DISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRI 375 (384)
T ss_dssp CCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred cccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh-hccCCCC
Confidence 12366778999999999999964 3 388999999999999999864333445899999999999997655 221 2 2
Q ss_pred cccccccc
Q 004413 236 LQMNLVAN 243 (755)
Q Consensus 236 ~~l~l~~n 243 (755)
..|+|++|
T Consensus 376 ~~L~L~~N 383 (384)
T d2omza2 376 TQLGLNDQ 383 (384)
T ss_dssp SEEECCCE
T ss_pred CEeeCCCC
Confidence 34677665
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.5e-20 Score=192.18 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=73.9
Q ss_pred ccccchhhhhc---CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAMR---GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~~---~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
++|||||++.. +.++.|+|||||||+||||+||+.|+........ +......+ ...|.+.+.+..+.
T Consensus 170 ~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~------~~~~~~~~----~~~p~~~~~~~~~~ 239 (276)
T d1uwha_ 170 ILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ------IIFMVGRG----YLSPDLSKVRSNCP 239 (276)
T ss_dssp GGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH------HHHHHHHT----SCCCCGGGSCTTCC
T ss_pred cccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHH------HHHHHhcC----CCCCcchhccccch
Confidence 57999999864 4689999999999999999999999976543321 12222222 12233333333445
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
..+.+++.+||+.+|++||||.||++.|+....
T Consensus 240 ~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~ 272 (276)
T d1uwha_ 240 KAMKRLMAECLKKKRDERPLFPQILASIELLAR 272 (276)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 578889999999999999999999999987654
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.4e-20 Score=193.50 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=71.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++..+.++.|+|||||||++|||+||+.|+....... .+.. .+.++.. ...+.++..++
T Consensus 177 ~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~--~~~~----~i~~~~~--------~~~~~~~~~~l 242 (283)
T d1mqba_ 177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMK----AINDGFR--------LPTPMDCPSAI 242 (283)
T ss_dssp GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHH----HHHTTCC--------CCCCTTCBHHH
T ss_pred ccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHH--HHHH----HHhccCC--------CCCchhhHHHH
Confidence 35999999999999999999999999999999766654332221 1222 2222211 11223344568
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
.+|+.+||+.+|++||||.||+++|+.....
T Consensus 243 ~~li~~cl~~~p~~RPt~~eil~~L~~l~~~ 273 (283)
T d1mqba_ 243 YQLMMQCWQQERARRPKFADIVSILDKLIRA 273 (283)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence 8899999999999999999999999887654
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.3e-20 Score=187.70 Aligned_cols=95 Identities=26% Similarity=0.308 Sum_probs=68.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcC-CCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN-SDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++....++.|+|||||||++|||+|+++| +..... ..+.+.+. .+. ....| ..+..+
T Consensus 166 ~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~---~~~~~~i~----~~~--~~~~p------~~~~~~ 230 (263)
T d1sm2a_ 166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN---SEVVEDIS----TGF--RLYKP------RLASTH 230 (263)
T ss_dssp TTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH---HHHHHHHH----HTC--CCCCC------TTSCHH
T ss_pred cccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH---HHHHHHHH----hcC--CCCCc------cccCHH
Confidence 469999999999999999999999999999996555 443222 12222222 221 11112 223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++..||+.+|++||||+||++.|+++.+
T Consensus 231 l~~li~~cl~~~p~~Rps~~~il~~L~~i~e 261 (263)
T d1sm2a_ 231 VYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261 (263)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 7889999999999999999999999987643
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=4.2e-20 Score=191.71 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCC-cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGR-ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++....+|.|+|||||||++|||+||. .|+......+ +.. .+.++...+ .+.....+
T Consensus 206 ~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e---~~~----~v~~~~~~~--------~p~~~~~~ 270 (301)
T d1lufa_ 206 IRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE---VIY----YVRDGNILA--------CPENCPLE 270 (301)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH----HHHTTCCCC--------CCTTCCHH
T ss_pred cCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHH---HHH----HHHcCCCCC--------CCccchHH
Confidence 4699999999999999999999999999999986 4665543332 222 223333221 12233446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+|+..||+.+|++||||.||+++|+++.
T Consensus 271 ~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 271 LYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 888999999999999999999999998753
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2e-19 Score=181.85 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=69.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||.+....++.|+|||||||++|||+| |+.|+......+ + ...+.++.. ... +......
T Consensus 165 ~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~---~----~~~i~~~~~--~~~------p~~~~~~ 229 (258)
T d1k2pa_ 165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE---T----AEHIAQGLR--LYR------PHLASEK 229 (258)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH---H----HHHHHTTCC--CCC------CTTCCHH
T ss_pred CCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH---H----HHHHHhCCC--CCC------cccccHH
Confidence 35999999999999999999999999999998 788987655432 1 122222211 111 1223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++..||+.+|++||||.||++.|.+
T Consensus 230 l~~li~~cl~~dP~~RPt~~eil~~L~d 257 (258)
T d1k2pa_ 230 VYTIMYSCWHEKADERPTFKILLSNILD 257 (258)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred HHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence 7889999999999999999999999864
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.3e-19 Score=185.44 Aligned_cols=92 Identities=23% Similarity=0.264 Sum_probs=70.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||.+..+.++.|+|||||||++|||+| |+.|+......+ +. ..+.++... +.+..+...
T Consensus 174 ~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~---~~----~~i~~~~~~--------~~p~~~~~~ 238 (277)
T d1xbba_ 174 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE---VT----AMLEKGERM--------GCPAGCPRE 238 (277)
T ss_dssp GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH----HHHHTTCCC--------CCCTTCCHH
T ss_pred ceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCcccCHH
Confidence 46999999999999999999999999999998 899987654332 22 222333211 112233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
+.+++.+||+.+|++||||.+|+++|+.
T Consensus 239 ~~~li~~cl~~dp~~RPs~~~i~~~L~~ 266 (277)
T d1xbba_ 239 MYDLMNLCWTYDVENRPGFAAVELRLRN 266 (277)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence 7789999999999999999999998875
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.1e-17 Score=165.82 Aligned_cols=202 Identities=22% Similarity=0.268 Sum_probs=158.6
Q ss_pred EecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCC
Q 004413 4 SVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFT 83 (755)
Q Consensus 4 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 83 (755)
+++.+++++.+ .+..+.+|+.|++.+|.|+. ++ .+.++++|++|+|++|.+++..| +.++++|++|++++|.++
T Consensus 25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~ 98 (227)
T d1h6ua2 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (227)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence 45566666544 35667899999999999884 43 58889999999999999876543 888999999999999887
Q ss_pred CCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCcccc
Q 004413 84 GKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIG 163 (755)
Q Consensus 84 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 163 (755)
.++ .+.++++|+.|++++|...+. ..+...+.+..+.++.+.+... ..+..+++|+.|++++|.+.... .+.
T Consensus 99 -~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~ 170 (227)
T d1h6ua2 99 -NVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLA 170 (227)
T ss_dssp -CCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGT
T ss_pred -ccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhc
Confidence 343 578899999999998887643 3467788889998887765433 34677888999999999887433 378
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeec
Q 004413 164 ELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 221 (755)
Q Consensus 164 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~ 221 (755)
.+++|+.|+|++|++++ ++ .+..+++|++|+|++|++++..|...+++|+.|+|++
T Consensus 171 ~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 171 NLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp TCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred ccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence 88999999999999884 44 4788999999999999998766656678999999874
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.8e-19 Score=184.96 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=71.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++.++.++.|+|||||||++|||+| |+.|+......+ +. ..+.+|...+ .+..+...
T Consensus 176 ~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~---~~----~~i~~~~~~~--------~p~~~~~~ 240 (285)
T d1u59a_ 176 LKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE---VM----AFIEQGKRME--------CPPECPPE 240 (285)
T ss_dssp GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH---HH----HHHHTTCCCC--------CCTTCCHH
T ss_pred ccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHH---HH----HHHHcCCCCC--------CCCcCCHH
Confidence 36999999999999999999999999999998 999997654332 22 2233333221 12233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|++||||.+|++.|+..
T Consensus 241 l~~li~~cl~~~p~~RPs~~~i~~~L~~~ 269 (285)
T d1u59a_ 241 LYALMSDCWIYKWEDRPDFLTVEQRMRAC 269 (285)
T ss_dssp HHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 77899999999999999999999999753
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.4e-19 Score=183.76 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=72.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|+|||++..+.++.|+|||||||++|||+||++|+...... ..+..++. .+... . .+..+..++
T Consensus 178 ~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~--~~~~~~i~----~~~~~-----~---~~~~~~~~l 243 (285)
T d1fmka3 178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQVE----RGYRM-----P---CPPECPESL 243 (285)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHH----TTCCC-----C---CCTTSCHHH
T ss_pred ccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCH--HHHHHHHH----hcCCC-----C---CCcccCHHH
Confidence 4699999999999999999999999999999977765443322 12222222 22111 1 122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccccCC
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIEVGK 681 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~~~ 681 (755)
.+++.+||+.+|++||+|.+|+++|+.......
T Consensus 244 ~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~ 276 (285)
T d1fmka3 244 HDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 276 (285)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence 789999999999999999999999998655443
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.4e-20 Score=186.02 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=67.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
.+|||||++.++.++.|+|||||||++|||+||++|+...... ..+... +..+. .+.. +......+
T Consensus 174 ~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~--~~~~~~----i~~~~-----~~~~---p~~~~~~l 239 (272)
T d1qpca_ 174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN--PEVIQN----LERGY-----RMVR---PDNCPEEL 239 (272)
T ss_dssp TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHH----HHTTC-----CCCC---CTTCCHHH
T ss_pred ccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCH--HHHHHH----HHhcC-----CCCC---cccChHHH
Confidence 4699999999999999999999999999999976665433222 112222 22221 1111 12233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAG 675 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~ 675 (755)
.+++..||+.+|++||||.||+++|+.
T Consensus 240 ~~li~~cl~~~P~~Rpt~~ei~~~L~~ 266 (272)
T d1qpca_ 240 YQLMRLCWKERPEDRPTFDYLRSVLED 266 (272)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence 789999999999999999999999985
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=7.8e-20 Score=188.00 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=70.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||++.++.++.|+|||||||++|||+||+.|+....... .+. +.+..+.. +. .+.....++
T Consensus 180 ~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~--~~~----~~i~~~~~-----~~---~~~~~~~~l 245 (287)
T d1opja_ 180 IKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVY----ELLEKDYR-----ME---RPEGCPEKV 245 (287)
T ss_dssp GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH----HHHHTTCC-----CC---CCTTCCHHH
T ss_pred ccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHH--HHH----HHHhcCCC-----CC---CCccchHHH
Confidence 46999999999999999999999999999999877754332221 122 22222211 11 122233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..||+.+|++||||.||+++|+....
T Consensus 246 ~~li~~cl~~dP~~Rps~~ei~~~L~~~~~ 275 (287)
T d1opja_ 246 YELMRACWQWNPSDRPSFAEIHQAFETMFQ 275 (287)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 889999999999999999999999987543
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.6e-19 Score=187.10 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=71.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.++.++.|+|||||||++|||+| |+.|++.....+ +. ..+..+... ..+..+...
T Consensus 177 ~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~---~~----~~i~~~~~~--------~~p~~~~~~ 241 (317)
T d1xkka_ 177 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE---IS----SILEKGERL--------PQPPICTID 241 (317)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG---HH----HHHHHTCCC--------CCCTTBCHH
T ss_pred ccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH---HH----HHHHcCCCC--------CCCcccCHH
Confidence 47999999999999999999999999999999 788887654433 11 222222211 112233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|.+||||.||++.|+....
T Consensus 242 ~~~li~~cl~~dP~~RPs~~eil~~l~~~~~ 272 (317)
T d1xkka_ 242 VYMIMVKCWMIDADSRPKFRELIIEFSKMAR 272 (317)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence 7889999999999999999999999887543
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6.2e-19 Score=184.75 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=69.3
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.++.++.|+|||||||+||||+| |+.|+........ +. +.+..+.. + +.+..+...
T Consensus 230 ~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~--~~----~~~~~~~~-----~---~~p~~~~~~ 295 (325)
T d1rjba_ 230 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN--FY----KLIQNGFK-----M---DQPFYATEE 295 (325)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HH----HHHHTTCC-----C---CCCTTCCHH
T ss_pred CccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHH--HH----HHHhcCCC-----C---CCCCcCCHH
Confidence 46999999999999999999999999999998 8999875433221 21 22222211 1 112233446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHh
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLA 674 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~ 674 (755)
+.+++..||+.+|++||||.||++.|.
T Consensus 296 l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 296 IYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 788999999999999999999999985
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.4e-19 Score=184.45 Aligned_cols=96 Identities=23% Similarity=0.343 Sum_probs=69.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|+|||++.++.++.|+|||||||++|||+||+.|+..... ...+..++ ..|... .+| ..+...+
T Consensus 198 ~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~--~~~~~~~i----~~g~~~--~~p------~~~~~~l 263 (311)
T d1r0pa_ 198 VKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITVYL----LQGRRL--LQP------EYCPDPL 263 (311)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--------CHHHH----HTTCCC--CCC------TTCCHHH
T ss_pred ccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC--HHHHHHHH----HcCCCC--CCc------ccCcHHH
Confidence 369999999999999999999999999999998888654221 11222222 223211 111 2233467
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++.+||+.+|++||+|.||++.|+....
T Consensus 264 ~~li~~cl~~dP~~RPs~~ei~~~L~~i~~ 293 (311)
T d1r0pa_ 264 YEVMLKCWHPKAEMRPSFSELVSRISAIFS 293 (311)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 789999999999999999999999988754
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7.7e-19 Score=177.80 Aligned_cols=94 Identities=24% Similarity=0.260 Sum_probs=70.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++.++.+|.|+|||||||++|||+| |+.|+...... .+..++ .++... .+ +.....+
T Consensus 164 ~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~---~~~~~i----~~~~~~-----~~---~~~~~~~ 228 (262)
T d1byga_ 164 VKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---DVVPRV----EKGYKM-----DA---PDGCPPA 228 (262)
T ss_dssp TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG---GHHHHH----TTTCCC-----CC---CTTCCHH
T ss_pred ccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH---HHHHHH----HcCCCC-----CC---CccCCHH
Confidence 47999999999999999999999999999999 67776654332 233333 222211 11 2222346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++.+||+.+|.+||||.||+++|+...
T Consensus 229 ~~~li~~cl~~dP~~Rps~~~l~~~L~~i~ 258 (262)
T d1byga_ 229 VYEVMKNCWHLDAAMRPSFLQLREQLEHIK 258 (262)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 778999999999999999999999998653
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.5e-19 Score=179.10 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=71.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++..+.++.|+|||||||++|||+| |+.|+......+ +.. .+.++.... .+......
T Consensus 173 ~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~---~~~----~i~~~~~~~--------~~~~~~~~ 237 (273)
T d1mp8a_ 173 IKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIG----RIENGERLP--------MPPNCPPT 237 (273)
T ss_dssp GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHH----HHHTTCCCC--------CCTTCCHH
T ss_pred cccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHH---HHH----HHHcCCCCC--------CCCCCCHH
Confidence 46999999999999999999999999999998 888887655433 222 222332111 12233446
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..||+.+|++||||.||++.|+...
T Consensus 238 ~~~li~~cl~~dp~~Rps~~ei~~~L~~i~ 267 (273)
T d1mp8a_ 238 LYSLMTKCWAYDPSRRPRFTELKAQLSTIL 267 (273)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 778999999999999999999999998654
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.8e-19 Score=179.09 Aligned_cols=94 Identities=19% Similarity=0.319 Sum_probs=70.4
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||.+.+..++.++|||||||++|||+| |+.|+......+ +..++ .+.+... +..... ...
T Consensus 178 ~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~---~~~~i---~~~~~~~----~~~~~~----~~~ 243 (273)
T d1u46a_ 178 FAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ---ILHKI---DKEGERL----PRPEDC----PQD 243 (273)
T ss_dssp GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHHHH---HTSCCCC----CCCTTC----CHH
T ss_pred cccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHH---HHHHH---HhCCCCC----CCcccc----cHH
Confidence 36999999999999999999999999999998 899987554332 22222 2222111 111222 345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~ 676 (755)
+.+++..||+.+|++||||.||++.|++.
T Consensus 244 l~~li~~cl~~dp~~RPt~~ei~~~L~~~ 272 (273)
T d1u46a_ 244 IYNVMVQCWAHKPEDRPTFVALRDFLLEA 272 (273)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 77899999999999999999999999753
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.3e-18 Score=181.00 Aligned_cols=96 Identities=22% Similarity=0.187 Sum_probs=70.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCc-CCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRA-NSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|+|||.+..+.++.|+|||||||++|||+||.. |+......+ +.++ +.++.. +.. +.....+
T Consensus 190 ~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~---~~~~----i~~~~~-----~~~---~~~~~~~ 254 (309)
T d1fvra_ 190 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYEK----LPQGYR-----LEK---PLNCDDE 254 (309)
T ss_dssp TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHHH----GGGTCC-----CCC---CTTBCHH
T ss_pred CcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHH---HHHH----HHhcCC-----CCC---CccCCHH
Confidence 46999999999999999999999999999999765 555433222 2222 222211 111 2223346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 679 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~~ 679 (755)
+.+++.+||+.+|++||||.||++.|+...+.
T Consensus 255 ~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~ 286 (309)
T d1fvra_ 255 VYDLMRQCWREKPYERPSFAQILVSLNRMLEE 286 (309)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 77889999999999999999999999887654
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.5e-19 Score=182.66 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=71.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCC-cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGR-ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||.+.++.++.|+|||||||++|||+||+ .|+......+ +.. .+.++...+ .+..+...
T Consensus 199 ~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~------~~~-~i~~~~~~~--------~p~~~~~~ 263 (308)
T d1p4oa_ 199 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ------VLR-FVMEGGLLD--------KPDNCPDM 263 (308)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH------HHH-HHHTTCCCC--------CCTTCCHH
T ss_pred cccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHH------HHH-HHHhCCCCC--------CcccchHH
Confidence 5699999999999999999999999999999986 5555433222 222 222232211 12233456
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|++||||.||+++|++..+
T Consensus 264 l~~li~~cl~~~P~~RPs~~~il~~L~~~~~ 294 (308)
T d1p4oa_ 264 LFELMRMCWQYNPKMRPSFLEIISSIKEEME 294 (308)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 8889999999999999999999999987644
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=8.6e-17 Score=157.20 Aligned_cols=180 Identities=23% Similarity=0.285 Sum_probs=104.0
Q ss_pred EccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 28 SFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 28 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
++..+.+++.++. ..+.+|++|++++|.+.... .+..+++|++|++++|++++ ++ .++++++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc
Confidence 4444544433321 23556666666666664322 35566666666666666664 22 2456666666666666665
Q ss_pred CCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCccccc
Q 004413 108 GPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 187 (755)
Q Consensus 108 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 187 (755)
+ ++ .+..+++|+.|++++|.... ...+..++.|+.++++.|.+++ +..+..+++|+.+++++|++++ ++ .+.
T Consensus 104 ~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~ 175 (210)
T d1h6ta2 104 D-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLA 175 (210)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGT
T ss_pred c-cc-cccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cc-ccc
Confidence 3 33 35666666666666655432 2345566666677776666653 2245566777777777777763 33 266
Q ss_pred CCCCCCEEEccCCcCCCCCCcccCCCCCEEEeec
Q 004413 188 NIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 221 (755)
Q Consensus 188 ~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~ 221 (755)
.+++|+.|+|++|+++...+...+++|++|+|++
T Consensus 176 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred CCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence 6777777777777776432223346777777653
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9.2e-19 Score=181.46 Aligned_cols=96 Identities=24% Similarity=0.253 Sum_probs=70.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCC-cCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGR-ANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++.++.++.|+|||||||++|||+||. .|+......+ ++...+.++...+ + +.....+
T Consensus 200 ~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~------~~~~~~~~~~~~~-----~---~~~~~~~ 265 (299)
T d1ywna1 200 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE------EFCRRLKEGTRMR-----A---PDYTTPE 265 (299)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH------HHHHHHHHTCCCC-----C---CTTCCHH
T ss_pred ccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHH------HHHHHHhcCCCCC-----C---CccCCHH
Confidence 4699999999999999999999999999999975 4665433221 2223333332221 1 2222346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|++||||.||++.|+...+
T Consensus 266 l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq 296 (299)
T d1ywna1 266 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 296 (299)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 7789999999999999999999999987643
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-18 Score=179.26 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=71.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhh-CCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllEllt-g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
++|||||++.++.++.|+|||||||++|||+| |+.|+......+ +...+..+...+ . +.....+
T Consensus 201 ~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~-------~~~~i~~~~~~~-----~---p~~~~~~ 265 (299)
T d1fgka_ 201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-------LFKLLKEGHRMD-----K---PSNCTNE 265 (299)
T ss_dssp GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-------HHHHHHTTCCCC-----C---CSSCCHH
T ss_pred hhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHH-------HHHHHHcCCCCC-----C---CccchHH
Confidence 47999999999999999999999999999999 677776544321 222333332111 1 1222346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|.+||||.||+++|+++..
T Consensus 266 l~~li~~cl~~dP~~Rps~~eil~~L~~i~a 296 (299)
T d1fgka_ 266 LYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA 296 (299)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence 7889999999999999999999999987654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=3e-16 Score=151.92 Aligned_cols=161 Identities=20% Similarity=0.304 Sum_probs=76.8
Q ss_pred CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 004413 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSL 99 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 99 (755)
.+.+|++|++++|.++. ++ .+..+++|++|+|++|++++..| +.++++|++|++++|.+.. ++ .+.++++|+.|
T Consensus 38 ~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccc
Confidence 34555555555555542 22 24555555555555555544322 5555555555555555542 22 24555555555
Q ss_pred EccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCC
Q 004413 100 RFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLT 179 (755)
Q Consensus 100 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 179 (755)
++++|.+... ..+..+++|+.|++++|.+.. .+.+..+++|+.|++.+|++++. + .++.+++|+.|++++|+++
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCC
Confidence 5555555421 224445555555555544332 12344445555555555544422 1 2444455555555555544
Q ss_pred CCCcccccCCCCCCE
Q 004413 180 GQIPRTLFNIGSLNY 194 (755)
Q Consensus 180 ~~~p~~l~~l~~L~~ 194 (755)
+ ++ .+..+++|+.
T Consensus 186 ~-i~-~l~~L~~L~~ 198 (199)
T d2omxa2 186 D-IS-VLAKLTNLES 198 (199)
T ss_dssp C-CG-GGGGCTTCSE
T ss_pred C-Cc-cccCCCCCCc
Confidence 2 22 2444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=5.2e-16 Score=153.56 Aligned_cols=183 Identities=23% Similarity=0.282 Sum_probs=153.6
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+.|++.+|+|+. + +.+.++++|++|+|++|.+++..| +.++++|++|++++|.++. + ..+.++++|+.|++++|
T Consensus 44 ~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~ 117 (227)
T d1h6ua2 44 TTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTST 117 (227)
T ss_dssp CEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTS
T ss_pred CEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccccc
Confidence 478999999985 4 358999999999999999985433 8999999999999999864 3 35889999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCc
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPS 160 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 160 (755)
...+. ..+...+.++.+.++++.+... ..+..+++|+.|++++|.+... ..+.++++|+.|+|++|++++ ++
T Consensus 118 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~- 189 (227)
T d1h6ua2 118 QITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS- 189 (227)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-
T ss_pred ccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-
Confidence 87743 3466789999999999988743 3477889999999999876543 348899999999999999985 44
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccC
Q 004413 161 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199 (755)
Q Consensus 161 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 199 (755)
.+..+++|+.|+|++|++++ ++ .+..+++|+.|++++
T Consensus 190 ~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 190 PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence 38899999999999999995 44 388999999999974
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.4e-19 Score=183.20 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=72.7
Q ss_pred ccccchhhhhcC------CCCccceeeeehheeehhhhCCcCCCCCchhh----H----HHHHHHHHHHhhcCccccccC
Q 004413 569 HGYLAPEYAMRG------HLTEKADVFSFGVAALEIISGRANSDNSLDME----K----IYLLEWAWNLHENNQSLGLVD 634 (755)
Q Consensus 569 ~gy~aPE~~~~~------~~t~ksDVysfGvvllElltg~~p~~~~~~~~----~----~~l~~~~~~~~~~~~~~~~~d 634 (755)
++|||||++... .++.|+|||||||+||||+||+.|+....... . ..-.+....... .+.++
T Consensus 176 ~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 251 (303)
T d1vjya_ 176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC----EQKLR 251 (303)
T ss_dssp GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT----TSCCC
T ss_pred cCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHh----ccccC
Confidence 679999998754 37889999999999999999988753211100 0 001112222222 22234
Q ss_pred CCCCC--CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 635 PTLTE--FNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 635 ~~l~~--~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
|.+.+ .+.+.+..+.+++.+||+.+|++||||.||+++|+...+
T Consensus 252 p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~ 297 (303)
T d1vjya_ 252 PNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence 44422 133566778999999999999999999999999987654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=3.5e-16 Score=152.73 Aligned_cols=179 Identities=22% Similarity=0.321 Sum_probs=146.7
Q ss_pred ecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCC
Q 004413 5 VAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTG 84 (755)
Q Consensus 5 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 84 (755)
+..+.+++.++. ..+.+|+.|++++|.++. ++ .+..+++|++|+|++|.+++. + .+..+++|++|++++|++++
T Consensus 31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~ 104 (210)
T d1h6ta2 31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD 104 (210)
T ss_dssp TTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred hCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc
Confidence 455666655543 356789999999999984 33 378899999999999999764 3 46889999999999999984
Q ss_pred CcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccC
Q 004413 85 KIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGE 164 (755)
Q Consensus 85 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 164 (755)
++ .+.++++|+.|++++|.+.. ...+..+++|+.+++++|.+.. ...+..+++|+.+++++|.+++. + .+.+
T Consensus 105 -l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~ 176 (210)
T d1h6ta2 105 -LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAG 176 (210)
T ss_dssp -GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred -cc-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccC
Confidence 55 58889999999999999873 3468889999999999987654 34577889999999999999854 3 3889
Q ss_pred CCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccC
Q 004413 165 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 199 (755)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 199 (755)
+++|+.|+|++|+++ .++ .+..+++|+.|+|++
T Consensus 177 l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 999999999999998 455 689999999999864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.5e-16 Score=157.44 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=140.3
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCc-hhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-STYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~ 79 (755)
++++.++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|.+...++ ..|.+++++++|.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 35677777777 6776553 588999999999885555578889999999999988876543 4688888899888765
Q ss_pred -CCCCCCcchhhcCCCCCcEEEccCCCCCCCCCc-cccCCCCCCeeecCCCCCCCCChhhhcCCC-CCCEEEeeCccccC
Q 004413 80 -APFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPS-SLSKLASLDSLRISDIYNVSSSLDFVMSLK-NLTDLSLRNALITG 156 (755)
Q Consensus 80 -n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~ 156 (755)
|++....+..|.++++|++|++++|.+....+. .+..+..+..+...++.+.......+..++ .++.|++++|.++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 567666667788889999999999888733221 222334444444455455554445555543 67777888777774
Q ss_pred CCCccccCCCCCCEE-eCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEE
Q 004413 157 SIPSGIGELQNLQTL-DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNI 217 (755)
Q Consensus 157 ~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L 217 (755)
..+ ......+++.+ ++++|+++...+..|.++++|+.|+|++|+|+ .+|...+.+|..|
T Consensus 168 i~~-~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L 227 (242)
T d1xwdc1 168 IHN-CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 227 (242)
T ss_dssp ECT-TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEE
T ss_pred ccc-ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccc
Confidence 333 33344454444 56667777433445677788888888888777 4444444444444
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.4e-18 Score=173.73 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=65.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
++|||||.+.+..++.|+|||||||+++||+||+.|+......+ + ...+.++.... + +......+
T Consensus 178 ~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~---~----~~~i~~~~~~~-----~---~~~~s~~l 242 (269)
T d2java1 178 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKE---L----AGKIREGKFRR-----I---PYRYSDEL 242 (269)
T ss_dssp CSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH---H----HHHHHHTCCCC-----C---CTTSCHHH
T ss_pred cccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHH---H----HHHHHcCCCCC-----C---CcccCHHH
Confidence 57999999999999999999999999999999999997644322 1 12222333221 1 11122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++.+|++.+|.+|||+.|+++
T Consensus 243 ~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 243 NEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHHh
Confidence 77889999999999999999864
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.7e-18 Score=175.69 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcC-CCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN-SDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++.++.++.|+|||||||++|||+|++.| +......+. ++..++.+.. +.. +......
T Consensus 211 ~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~------~~~~i~~~~~-----~~~---~~~~~~~ 276 (311)
T d1t46a_ 211 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK------FYKMIKEGFR-----MLS---PEHAPAE 276 (311)
T ss_dssp GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH------HHHHHHHTCC-----CCC---CTTSCHH
T ss_pred hHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH------HHHHHhcCCC-----CCC---cccccHH
Confidence 469999999999999999999999999999995555 443322221 1222222211 111 1122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
+.+++.+||+.+|++||||.||+++|++...
T Consensus 277 l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~ 307 (311)
T d1t46a_ 277 MYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (311)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence 7889999999999999999999999987543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=1.2e-16 Score=153.89 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=82.0
Q ss_pred CCcEEEccCCCCCCCC-CccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeC
Q 004413 95 KLKSLRFQGNSFQGPI-PSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDL 173 (755)
Q Consensus 95 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 173 (755)
++++|+|++|+|+..+ +..|..+++|+.|+|++|.+.......+..+++|++|+|++|+++...+..|.++++|++|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 3444444444443222 223344444444444444444444444445555555556666666555566666666666666
Q ss_pred CCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCccc-CCCCCEEEeecCcCCCCCcccccccccccccccccccC
Q 004413 174 SFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK-SENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 248 (755)
Q Consensus 174 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~~~ 248 (755)
++|+|++..+.+|..+++|++|+|++|.+........ ...++.+.+..|.++...|..+.....++|+.|.|++.
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~ 185 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred CCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCC
Confidence 6666665555566666666666666666654333221 12344455566666666665554333456666666544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.2e-15 Score=147.70 Aligned_cols=180 Identities=25% Similarity=0.328 Sum_probs=130.2
Q ss_pred CCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 004413 24 LTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQG 103 (755)
Q Consensus 24 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 103 (755)
+..+.++.+.+++.++ ...+.+|++|++++|.+... ..+..+++|++|++++|++++..+ ++++++|++|++++
T Consensus 20 ~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~ 93 (199)
T d2omxa2 20 KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 93 (199)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccc
Confidence 3345667777765432 34678899999999988643 357888999999999998885432 88889999999999
Q ss_pred CCCCCCCCccccCCCCCCeeecCCCCCCCCChhhhcCCCCCCEEEeeCccccCCCCccccCCCCCCEEeCCCCCCCCCCc
Q 004413 104 NSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 183 (755)
Q Consensus 104 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 183 (755)
|.+. .++ .+.++++|+.|++++|..... ..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|++++ ++
T Consensus 94 n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~ 166 (199)
T d2omxa2 94 NQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK 166 (199)
T ss_dssp SCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG
T ss_pred cccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc
Confidence 8887 333 478888888888887765543 346778888888888888763 33 57778888888888888874 33
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCcccCCCCCEE
Q 004413 184 RTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNI 217 (755)
Q Consensus 184 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L 217 (755)
.+.++++|+.|++++|++++..+...+++|++|
T Consensus 167 -~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 167 -PLANLTTLERLDISSNKVSDISVLAKLTNLESL 199 (199)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred -cccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence 377788888888888887753333344666654
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.1e-18 Score=171.16 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=64.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+|||||||+|+||+||+.|+......+ + ...+.++. +.+.+ .....+
T Consensus 168 ~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~---~----~~~i~~~~------~~~p~---~~s~~~ 231 (263)
T d2j4za1 168 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE---T----YKRISRVE------FTFPD---FVTEGA 231 (263)
T ss_dssp GGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---H----HHHHHTTC------CCCCT---TSCHHH
T ss_pred CcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHH---H----HHHHHcCC------CCCCc---cCCHHH
Confidence 57999999999999999999999999999999999997644322 1 11122221 11111 122356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.||++
T Consensus 232 ~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 232 RDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCCHhHCcCHHHHHc
Confidence 67888999999999999999975
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=1e-16 Score=154.24 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=77.8
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCC-cccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL-PPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
+++.++++|+ .+|..+. +++++|+|++|+|+..+ +..|.++++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 3556666666 4555443 46666666666665433 444566666666666666666666666666666666666666
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCCCeeecCCCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 131 (755)
+++...+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 666555555666666666666666666555555666666666666655543
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=6e-17 Score=167.76 Aligned_cols=89 Identities=22% Similarity=0.357 Sum_probs=63.2
Q ss_pred ccccchhhhh---cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHH
Q 004413 569 HGYLAPEYAM---RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEA 645 (755)
Q Consensus 569 ~gy~aPE~~~---~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 645 (755)
++|||||++. .+.++.|+|||||||+++||+||+.|+......+. ...... +......+ ..+ .
T Consensus 175 ~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~------~~~i~~-~~~~~~~~---~~~----s 240 (309)
T d1u5ra_ 175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQ-NESPALQS---GHW----S 240 (309)
T ss_dssp GGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHH-SCCCCCSC---TTS----C
T ss_pred ccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHH------HHHHHh-CCCCCCCC---CCC----C
Confidence 5799999986 35799999999999999999999999875443221 112222 11111111 112 2
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 646 LRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 646 ~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+.+++.+|++.+|.+|||+.|+++
T Consensus 241 ~~~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 241 EYFRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHHCcCChhHCcCHHHHHh
Confidence 35677889999999999999999975
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.6e-16 Score=163.15 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=64.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++|||||||+++||+||+.|+......+. .......+. +.+ ..+......+
T Consensus 180 ~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~~~~~~~~~------~~~-~~~~~~s~~~ 246 (293)
T d1yhwa1 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA------LYLIATNGT------PEL-QNPEKLSAIF 246 (293)
T ss_dssp GGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHHCS------CCC-SSGGGSCHHH
T ss_pred CCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHH------HHHHHhCCC------CCC-CCcccCCHHH
Confidence 569999999999999999999999999999999999975443221 111222211 111 1111223456
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 247 ~~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 247 RDFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 77899999999999999999863
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.61 E-value=4.6e-14 Score=148.46 Aligned_cols=228 Identities=24% Similarity=0.238 Sum_probs=147.5
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|||++|+++ .+|+. .++|++|+|++|+|+ .+|..+ .+|+.|++++|+++. ++.. .+.|++|++++|
T Consensus 41 ~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n 108 (353)
T d1jl5a_ 41 HELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNN 108 (353)
T ss_dssp SEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSS
T ss_pred CEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhhh---cccccccccccc
Confidence 47999999998 57753 478999999999998 678654 578999999998863 3321 146999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCCCCC------------------CccccCCCCCCeeecCCCCCCCCC--------
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPI------------------PSSLSKLASLDSLRISDIYNVSSS-------- 134 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------------p~~l~~l~~L~~L~l~~n~~~~~~-------- 134 (755)
.+. .+|. ++.+++|++|++++|.+.... ...+..++.++.|.+..|......
T Consensus 109 ~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~ 186 (353)
T d1jl5a_ 109 QLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLES 186 (353)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccc
Confidence 988 5664 678999999999998776321 122445667777777766543221
Q ss_pred ----------hhhhcCCCCCCEEEeeCccccCCCCcccc-----------------CCCCCCEEeCCCCCCCC-------
Q 004413 135 ----------LDFVMSLKNLTDLSLRNALITGSIPSGIG-----------------ELQNLQTLDLSFNNLTG------- 180 (755)
Q Consensus 135 ----------~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----------------~l~~L~~L~Ls~N~l~~------- 180 (755)
...+..++.|+.+++++|.... ++.... ....+..+++..+.+.+
T Consensus 187 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~ 265 (353)
T d1jl5a_ 187 IVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265 (353)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccch
Confidence 1234556778888888876652 222111 11223333333332221
Q ss_pred ---------CCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccccccccccccccccc
Q 004413 181 ---------QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFT 246 (755)
Q Consensus 181 ---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~~~~~~l~l~~n~~~ 246 (755)
.+......+++|++|++++|+|+ .+|. ..++|+.|+|++|+|+ .+|..+.....|++++|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~~~L~~L~L~~N~L~-~l~~~~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA-LPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLR 337 (353)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCS
T ss_pred hcccccccCccccccccCCCCCEEECCCCccC-cccc-ccCCCCEEECCCCcCC-ccccccCCCCEEECcCCcCC
Confidence 00111122467888888888877 4443 3467888888888887 56665444445777877765
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7e-17 Score=165.57 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=63.4
Q ss_pred ccccchhhhh-----cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHH
Q 004413 569 HGYLAPEYAM-----RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDK 643 (755)
Q Consensus 569 ~gy~aPE~~~-----~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~ 643 (755)
+.|||||++. ...++.|+|||||||+++||+||+.|+......+. . .... .+.. +.+ ..+..
T Consensus 174 ~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~---~---~~i~-~~~~-----~~~-~~~~~ 240 (288)
T d2jfla1 174 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRV---L---LKIA-KSEP-----PTL-AQPSR 240 (288)
T ss_dssp CTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH---H---HHHH-HSCC-----CCC-SSGGG
T ss_pred cccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHH---H---HHHH-cCCC-----CCC-Ccccc
Confidence 5699999984 45689999999999999999999999976544331 1 1111 1111 111 11122
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 644 EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 644 ~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+.++...|++.+|++|||+.|+++
T Consensus 241 ~s~~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 241 WSSNFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 2345677889999999999999999864
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.5e-16 Score=161.45 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=62.7
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+. ++++.|+|||||||++|||+||+.|+........ +...+..+..... +. .....++
T Consensus 177 ~~Y~aPE~~~-~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~------~~~~i~~~~~~~~----~~---~~~~~~~ 242 (270)
T d1t4ha_ 177 PEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ------IYRRVTSGVKPAS----FD---KVAIPEV 242 (270)
T ss_dssp CCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH------HHHHHTTTCCCGG----GG---GCCCHHH
T ss_pred ccccCHHHhC-CCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHH------HHHHHHcCCCCcc----cC---ccCCHHH
Confidence 5799999876 5699999999999999999999999975433221 1122222211111 11 1112346
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.+++..|++.+|++|||+.|+++
T Consensus 243 ~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 243 KEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCCHhHCcCHHHHhC
Confidence 77899999999999999999864
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=7.4e-17 Score=166.90 Aligned_cols=100 Identities=10% Similarity=-0.023 Sum_probs=68.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHH-HHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL-EWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||.+.+..++.|+|||||||+++||+||+.|+............ .+....... ..... ......+
T Consensus 177 ~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~p~~ 247 (299)
T d1ckia_ 177 ARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-PIEVL--------CKGYPSE 247 (299)
T ss_dssp SSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS-CHHHH--------TTTSCHH
T ss_pred ccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC-ChhHh--------ccCCCHH
Confidence 4699999999999999999999999999999999999765433322111 111111110 00000 1112345
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHHHHhccc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVAMLAGDI 677 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~~L~~~~ 677 (755)
+.+++..||+.+|++||++.++.+.|+...
T Consensus 248 ~~~li~~cl~~~p~~RP~~~~i~~~l~~~~ 277 (299)
T d1ckia_ 248 FATYLNFCRSLRFDDKPDYSYLRQLFRNLF 277 (299)
T ss_dssp HHHHHHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence 778899999999999999999999888653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-15 Score=152.18 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=150.2
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCC-cccccCCccCcEEEccc-cCCCCCCchhhhcCCCCCEEEcc
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL-PPEIGNLAKLEQLYLNS-WGAGGEIPSTYAKLRNMQTLWAS 78 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~ 78 (755)
++|+|++|.|+...+..|.++++|++|+|++|.+...+ +..|.+++++++|.+.. |.+....+..|.++++|++|++.
T Consensus 32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~ 111 (242)
T d1xwdc1 32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 111 (242)
T ss_dssp SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence 57999999998655668999999999999999987644 45688999999998864 67777777889999999999999
Q ss_pred CCCCCCCcc-hhhcCCCCCcEEEccCCCCCCCCCccccCCC-CCCeeecCCCCCCCCChhhhcCCCCCCEE-EeeCcccc
Q 004413 79 DAPFTGKIP-DFIGNWTKLKSLRFQGNSFQGPIPSSLSKLA-SLDSLRISDIYNVSSSLDFVMSLKNLTDL-SLRNALIT 155 (755)
Q Consensus 79 ~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L-~L~~n~l~ 155 (755)
+|.+....+ ..+..+..|..+...++.+....+..+..++ .++.|++.+|.+.......+. ..++..+ .+.+|+++
T Consensus 112 ~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~ 190 (242)
T d1xwdc1 112 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLE 190 (242)
T ss_dssp SCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCC
T ss_pred hhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccccc
Confidence 999874322 2344566677777778888755556666664 788999999888766655544 4455444 56788888
Q ss_pred CCCCccccCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEcc
Q 004413 156 GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLG 198 (755)
Q Consensus 156 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 198 (755)
...+..|..+++|+.|+|++|+++...+..+.++++|+.+++.
T Consensus 191 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 5555668999999999999999995444456666666665543
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=8.3e-17 Score=166.58 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=65.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+|||||||+++||+||+.|+......+ +.. .+..+... .-.+.....+ ..+
T Consensus 173 ~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~~~----~i~~~~~~-~~~~~~~~~s----~~~ 240 (307)
T d1a06a_ 173 PGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAK---LFE----QILKAEYE-FDSPYWDDIS----DSA 240 (307)
T ss_dssp CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHH----HHHTTCCC-CCTTTTTTSC----HHH
T ss_pred ccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHH---HHH----HHhccCCC-CCCccccCCC----HHH
Confidence 57999999999999999999999999999999999997654322 111 11122111 1111112223 356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 241 ~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 241 KDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCCHhHCcCHHHHhc
Confidence 78899999999999999999976
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.7e-17 Score=164.10 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=61.5
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||++.+..+ +.++||||+||+++||+||+.|++....... ....+ ...... .+.....+ ..
T Consensus 169 ~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~-~~~~~-----~~~~~~---~~~~~~~s----~~ 235 (271)
T d1nvra_ 169 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSDW-----KEKKTY---LNPWKKID----SA 235 (271)
T ss_dssp GGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSH-HHHHH-----HTTCTT---STTGGGSC----HH
T ss_pred cCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHH-HHHHH-----hcCCCC---CCccccCC----HH
Confidence 57999999988776 6789999999999999999999975433221 11111 111100 00011122 34
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++..+|++.+|++|||+.||++
T Consensus 236 ~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 236 PLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHcCCChhHCcCHHHHhc
Confidence 567888999999999999999853
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-16 Score=166.84 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=38.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCc
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSL 609 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~ 609 (755)
..|||||++.+..++.++||||+||+++||+||+.|+....
T Consensus 167 ~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~ 207 (322)
T d1s9ja_ 167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD 207 (322)
T ss_dssp SCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred ccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 57999999999999999999999999999999999997543
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-16 Score=163.55 Aligned_cols=87 Identities=9% Similarity=0.118 Sum_probs=64.2
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+||||+||+++||+||+.|+......+ + ...+.++.. .+ +......+
T Consensus 174 ~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~----~~~i~~~~~------~~---p~~~s~~~ 237 (288)
T d1uu3a_ 174 AQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYL---I----FQKIIKLEY------DF---PEKFFPKA 237 (288)
T ss_dssp GGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H----HHHHHTTCC------CC---CTTCCHHH
T ss_pred ccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHH---H----HHHHHcCCC------CC---CccCCHHH
Confidence 57999999999999999999999999999999999997643322 1 112222221 11 11112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|.+|||+.|+..
T Consensus 238 ~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 238 RDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp HHHHHTTSCSSGGGSTTSGGGTC
T ss_pred HHHHHHHccCCHhHCcCHHHHcC
Confidence 77889999999999999998753
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=4.8e-16 Score=158.71 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=69.0
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccc-cccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL-GLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~ 647 (755)
+.|||||.+.+..++.++|||||||+++||+||+.|+......+ ........+... .... ... ...
T Consensus 178 ~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~------~~~~~~~~~~~~~~~~~---~~~----s~~ 244 (277)
T d1o6ya_ 178 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS------VAYQHVREDPIPPSARH---EGL----SAD 244 (277)
T ss_dssp -TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHCCCCCGGGTS---SSC----CHH
T ss_pred ccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHH------HHHHHHhcCCCCCchhc---cCC----CHH
Confidence 57999999999999999999999999999999999997654322 122233322111 1111 122 235
Q ss_pred HHHHHHHhcccCCCCCC-CHHHHHHHHhcc
Q 004413 648 VIGVALLCTQASPMMRP-PMSRVVAMLAGD 676 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RP-sm~~v~~~L~~~ 676 (755)
+.++..+|++.+|.+|| |+.++...|.+.
T Consensus 245 l~~li~~~L~~dp~~R~~sa~~l~~~l~r~ 274 (277)
T d1o6ya_ 245 LDAVVLKALAKNPENRYQTAAEMRADLVRV 274 (277)
T ss_dssp HHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence 67788899999999999 899998888754
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.1e-16 Score=162.85 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=64.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
..|||||.+.+..++.|+|||||||+++||+||+.|+......+ .. ..+..+... ..+ ..+......+
T Consensus 180 ~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~~----~~i~~~~~~--~~~---~~~~~~s~~~ 247 (293)
T d1jksa_ 180 PEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TL----ANVSAVNYE--FED---EYFSNTSALA 247 (293)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHTTCCC--CCH---HHHTTSCHHH
T ss_pred CcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHH---HH----HHHHhcCCC--CCc---hhcCCCCHHH
Confidence 57999999999999999999999999999999999997654322 11 111111110 000 0001112356
Q ss_pred HHHHHHhcccCCCCCCCHHHHHH
Q 004413 649 IGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++...|++.+|++|||+.|+++
T Consensus 248 ~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 248 KDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHccCChhHCcCHHHHhc
Confidence 67889999999999999999875
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.2e-16 Score=162.58 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhc-Cc--c------c-ccc----C
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHEN-NQ--S------L-GLV----D 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~-~~--~------~-~~~----d 634 (755)
+.|||||++.+..++.|+||||+||+++||+||+.|+......+.... +...... .. . . ... .
T Consensus 179 ~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (305)
T d1blxa_ 179 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGK---ILDVIGLPGEEDWPRDVALPRQAFHSKSA 255 (305)
T ss_dssp CTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---HHHHHCCCCGGGSCTTCSSCGGGSCCCCC
T ss_pred hhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHH---HHHhhCCCchhcccccccchhhhhccccc
Confidence 579999999999999999999999999999999999986544332111 1111100 00 0 0 000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+..........+.++..+|++.||++|||+.|+++
T Consensus 256 ~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~ 292 (305)
T d1blxa_ 256 QPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292 (305)
T ss_dssp CCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 0001111112235667889999999999999999864
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=6e-16 Score=159.27 Aligned_cols=102 Identities=9% Similarity=0.052 Sum_probs=71.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.|+|||||||+++||+||+.|+..............+..........++ - ... +.++
T Consensus 177 ~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l-~---~~~----p~~l 248 (293)
T d1csna_ 177 ARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLREL-C---AGF----PEEF 248 (293)
T ss_dssp TTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHH-T---TTS----CHHH
T ss_pred hhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHh-c---CCC----CHHH
Confidence 4699999999999999999999999999999999999754433222222222211111111111 0 112 2457
Q ss_pred HHHHHHhcccCCCCCCCHHHHHHHHhcccc
Q 004413 649 IGVALLCTQASPMMRPPMSRVVAMLAGDIE 678 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~~v~~~L~~~~~ 678 (755)
.+++..|++.+|++||++..+.+.|+....
T Consensus 249 ~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~ 278 (293)
T d1csna_ 249 YKYMHYARNLAFDATPDYDYLQGLFSKVLE 278 (293)
T ss_dssp HHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence 778889999999999999999888876543
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.53 E-value=5.2e-16 Score=163.40 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=64.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
+.|||||++.+..++.++||||+||+++||+||+.|+......+ + .... ..+... .++.. ... ...
T Consensus 189 ~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~---~---~~~i-~~~~~~--~~~~~~~~~----s~~ 255 (350)
T d1koaa2 189 AEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE---T---LRNV-KSCDWN--MDDSAFSGI----SED 255 (350)
T ss_dssp TTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---H---HHHH-HHTCCC--SCCGGGGGC----CHH
T ss_pred ccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH---H---HHHH-HhCCCC--CCcccccCC----CHH
Confidence 57999999999999999999999999999999999997544322 1 1111 111110 11111 112 235
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.||++|||+.|+++
T Consensus 256 ~~~li~~~L~~dP~~R~t~~eil~ 279 (350)
T d1koaa2 256 GKDFIRKLLLADPNTRMTIHQALE 279 (350)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHhc
Confidence 667889999999999999999976
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=1e-15 Score=162.18 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=60.8
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHH
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~ 646 (755)
+.|||||++.. ..++.|+|||||||+|+||+||+.|+......+... +...... ..+.+ ..++ .
T Consensus 169 ~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~----~~~~~~~------~~~~~~~~~s----~ 234 (364)
T d1omwa3 169 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDRMTLT------MAVELPDSFS----P 234 (364)
T ss_dssp GGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHH----HHHHSSS------CCCCCCSSSC----H
T ss_pred cccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHH----HHHhccc------CCCCCCCCCC----H
Confidence 67999999975 468999999999999999999999997644322111 1111111 01111 1222 3
Q ss_pred HHHHHHHHhcccCCCCCCCH-----HHHH
Q 004413 647 RVIGVALLCTQASPMMRPPM-----SRVV 670 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPsm-----~~v~ 670 (755)
.+.++...|++.+|.+|||+ .|+.
T Consensus 235 ~~~~li~~~L~~dP~~R~t~~~~~a~eil 263 (364)
T d1omwa3 235 ELRSLLEGLLQRDVNRRLGCLGRGAQEVK 263 (364)
T ss_dssp HHHHHHHHHTCSSTTTSTTTSSSTHHHHH
T ss_pred HHHHHHHHHcccCHHHhCCCcccCHHHHH
Confidence 46778899999999999994 6665
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.7e-16 Score=162.64 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=63.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||++.+..++.|+|||||||+++||+||+.|+......+ +...+..+. +.+.. .....+
T Consensus 167 ~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~-------~~~~i~~~~------~~~p~---~~s~~~ 230 (320)
T d1xjda_ 167 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE-------LFHSIRMDN------PFYPR---WLEKEA 230 (320)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-------HHHHHHHCC------CCCCT---TSCHHH
T ss_pred CCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHH-------HHHHHHcCC------CCCCc---cCCHHH
Confidence 56999999999999999999999999999999999997654322 222222221 12211 112346
Q ss_pred HHHHHHhcccCCCCCCCHH-HHH
Q 004413 649 IGVALLCTQASPMMRPPMS-RVV 670 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPsm~-~v~ 670 (755)
.++...|++.+|.+||++. |+.
T Consensus 231 ~dli~~~L~~dP~~R~s~~~~l~ 253 (320)
T d1xjda_ 231 KDLLVKLFVREPEKRLGVRGDIR 253 (320)
T ss_dssp HHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHhcccCCCCCcCHHHHHH
Confidence 7888999999999999985 664
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=2.1e-15 Score=158.78 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++|||||||+++||+||+.|+....... +. ..+..+.. .. +......+
T Consensus 202 ~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~---~~----~~i~~~~~------~~---p~~~s~~~ 265 (350)
T d1rdqe_ 202 PEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQ---IY----EKIVSGKV------RF---PSHFSSDL 265 (350)
T ss_dssp GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHCCC------CC---CTTCCHHH
T ss_pred cccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHH---HH----HHHhcCCC------CC---CccCCHHH
Confidence 57999999999999999999999999999999999997543221 11 11122211 11 11122356
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++...|++.||.+|+ |+.|+.+
T Consensus 266 ~~li~~~L~~dP~kR~~~~r~t~~ell~ 293 (350)
T d1rdqe_ 266 KDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHHhhhCHHhccccccccHHHHHc
Confidence 7788999999999994 8888864
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.51 E-value=1.2e-15 Score=160.82 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=65.5
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
..|||||++.+..++.|+||||+||+++||+||+.|+......+ +.. .+..+... ..+.. ...+ ..
T Consensus 192 ~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---~~~----~i~~~~~~--~~~~~~~~~s----~~ 258 (352)
T d1koba_ 192 AEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE---TLQ----NVKRCDWE--FDEDAFSSVS----PE 258 (352)
T ss_dssp GGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HHH----HHHHCCCC--CCSSTTTTSC----HH
T ss_pred ccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH---HHH----HHHhCCCC--CCcccccCCC----HH
Confidence 57999999999999999999999999999999999997654322 111 11222111 11111 1222 35
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.+++..|++.+|.+|||+.|+++
T Consensus 259 ~~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 259 AKDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhHCcCHHHHhc
Confidence 677899999999999999999975
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=2e-15 Score=156.66 Aligned_cols=87 Identities=22% Similarity=0.207 Sum_probs=63.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||.+.+..++.++||||+||+++||+||+.|+......+. . ..+..+... +.+ ..+ ..+
T Consensus 165 ~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~------~-~~i~~~~~~--~p~---~~s----~~~ 228 (316)
T d1fota_ 165 PDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT------Y-EKILNAELR--FPP---FFN----EDV 228 (316)
T ss_dssp TTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH------H-HHHHHCCCC--CCT---TSC----HHH
T ss_pred ccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHH------H-HHHHcCCCC--CCC---CCC----HHH
Confidence 579999999999999999999999999999999999976543221 1 112222110 111 122 346
Q ss_pred HHHHHHhcccCCCCCC-----CHHHHHH
Q 004413 649 IGVALLCTQASPMMRP-----PMSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RP-----sm~~v~~ 671 (755)
.++..+|++.+|.+|| |+.|+.+
T Consensus 229 ~~li~~~L~~dp~~R~~~~r~t~~~il~ 256 (316)
T d1fota_ 229 KDLLSRLITRDLSQRLGNLQNGTEDVKN 256 (316)
T ss_dssp HHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHHHHHhhhCHHhccccchhhHHHHHc
Confidence 6788999999999996 7888764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.50 E-value=1.1e-12 Score=137.50 Aligned_cols=215 Identities=20% Similarity=0.229 Sum_probs=146.9
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
++|+|++|+|+ .+|.. +.+|+.|++++|.++ .++. + .+.|++|++++|.+. .+|. +..+++|++|++++|
T Consensus 61 ~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~ 130 (353)
T d1jl5a_ 61 ESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNN 130 (353)
T ss_dssp SEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSS
T ss_pred CEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeeccccc
Confidence 57999999999 66764 458999999999987 4442 1 146999999999986 4553 678999999999988
Q ss_pred CCCCCc------------------chhhcCCCCCcEEEccCCCCCCCC------------------CccccCCCCCCeee
Q 004413 81 PFTGKI------------------PDFIGNWTKLKSLRFQGNSFQGPI------------------PSSLSKLASLDSLR 124 (755)
Q Consensus 81 ~l~~~~------------------p~~~~~l~~L~~L~L~~n~l~~~~------------------p~~l~~l~~L~~L~ 124 (755)
.+.... ...+..++.++.|++++|.+.... ...+..++.|+.++
T Consensus 131 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~ 210 (353)
T d1jl5a_ 131 SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210 (353)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred cccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccccc
Confidence 776321 123555678888888887655211 11245578889999
Q ss_pred cCCCCCCCCChh----------------hhcCCCCCCEEEeeCccccC----------------CCCccccCCCCCCEEe
Q 004413 125 ISDIYNVSSSLD----------------FVMSLKNLTDLSLRNALITG----------------SIPSGIGELQNLQTLD 172 (755)
Q Consensus 125 l~~n~~~~~~~~----------------~l~~l~~L~~L~L~~n~l~~----------------~~p~~~~~l~~L~~L~ 172 (755)
+++|........ .......+..+++..+.+.+ .+......+++|++|+
T Consensus 211 l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 290 (353)
T d1jl5a_ 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 290 (353)
T ss_dssp CCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEE
Confidence 887765432210 00112234444444433321 1112223457999999
Q ss_pred CCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccc
Q 004413 173 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWV 232 (755)
Q Consensus 173 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~ 232 (755)
|++|+++ .+|.. +++|+.|+|++|+|+ .+|. ...+|+.|+|++|+|+ .+|...
T Consensus 291 Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~-~~~~L~~L~L~~N~L~-~lp~~~ 343 (353)
T d1jl5a_ 291 VSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE-LPQNLKQLHVEYNPLR-EFPDIP 343 (353)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC-CCTTCCEEECCSSCCS-SCCCCC
T ss_pred CCCCccC-ccccc---cCCCCEEECCCCcCC-cccc-ccCCCCEEECcCCcCC-CCCccc
Confidence 9999998 67753 678999999999998 4554 4578999999999998 677543
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.9e-15 Score=150.94 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=64.6
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccC----------CCC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVD----------PTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d----------~~l 637 (755)
..|||||.+..+ .++.|+|||||||+++||+||+.|+......+. ...+.+...........+ ...
T Consensus 164 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~---l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (299)
T d1ua2a_ 164 RWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ---LTRIFETLGTPTEEQWPDMCSLPDYVTFKSF 240 (299)
T ss_dssp CTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHHCCCCTTTSSSTTSSTTCCCCCCC
T ss_pred hhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHH---HHHHHHhcCCCChhhccchhccchhhhhccC
Confidence 469999998755 579999999999999999999999876543322 222222211100000000 000
Q ss_pred CCCCHH-----HHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDK-----EALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~-----~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.. ....+.++...|++.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~ 279 (299)
T d1ua2a_ 241 PGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 279 (299)
T ss_dssp CCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence 111111 1245778999999999999999999975
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.6e-16 Score=156.35 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=59.7
Q ss_pred ccccchhhhhcCCC-CccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHL-TEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~-t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 647 (755)
..|||||++....+ +.++||||+||+++||+||+.|+.... .+ . .+.. .+.+ .++ ..
T Consensus 173 ~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-----~i-------~-~~~~--~~~~---~~s----~~ 230 (273)
T d1xwsa_ 173 RVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-----EI-------I-RGQV--FFRQ---RVS----SE 230 (273)
T ss_dssp GGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-----HH-------H-HCCC--CCSS---CCC----HH
T ss_pred CCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-----HH-------h-hccc--CCCC---CCC----HH
Confidence 56999999987766 577899999999999999999986421 11 1 1111 1111 122 34
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++..+|++.+|++|||+.|+++
T Consensus 231 ~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 231 CQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCCHhHCcCHHHHhc
Confidence 667888999999999999999875
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.8e-15 Score=151.06 Aligned_cols=220 Identities=16% Similarity=0.170 Sum_probs=148.3
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCC-CchhhhcCCCCCEEEccC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE-IPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~ 79 (755)
+.|||+++.+.......+.. ..+..+.++.+.+.... .......+|++|+|++|.+... +...+.++++|++|+|++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46899988876433332322 24566777766654322 2334557889999988887643 344577888999999999
Q ss_pred CCCCCCcchhhcCCCCCcEEEccCC-CCCCC-CCccccCCCCCCeeecCCCCCCCC-Ch-hhh-cCCCCCCEEEeeCcc-
Q 004413 80 APFTGKIPDFIGNWTKLKSLRFQGN-SFQGP-IPSSLSKLASLDSLRISDIYNVSS-SL-DFV-MSLKNLTDLSLRNAL- 153 (755)
Q Consensus 80 n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~-~~-~~l-~~l~~L~~L~L~~n~- 153 (755)
|.++...+..++.+++|++|++++| .++.. +...+..+++|++|++++|..... .. ..+ ...++|+.|+++++.
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 9888777788888889999999885 45521 122245678899999988654322 11 123 335688999988753
Q ss_pred -ccCC-CCccccCCCCCCEEeCCCC-CCCCCCcccccCCCCCCEEEccCC-cCCCCCCcc--cCCCCCEEEeecC
Q 004413 154 -ITGS-IPSGIGELQNLQTLDLSFN-NLTGQIPRTLFNIGSLNYLFLGNN-SLSGTLPTQ--KSENLQNIDLSYN 222 (755)
Q Consensus 154 -l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~--~~~~L~~L~Ls~N 222 (755)
++.. +...+..+++|++|++++| .+++.....+..+++|++|++++| .+++..... ..++|+.|+++++
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 3322 2333456788999999886 477677778888899999999885 565433322 2478999999887
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.4e-14 Score=123.00 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=80.8
Q ss_pred CeEEecCCcCcCCCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 1 MLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
|+|+|++|+|+ .++ .+.++++|++|++++|.++ .+|+.|+.+++|++|++++|.++.. | .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence 67889999988 444 4788888999999999887 5777788888888998888888653 4 4788888888888888
Q ss_pred CCCCCc-chhhcCCCCCcEEEccCCCCC
Q 004413 81 PFTGKI-PDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 81 ~l~~~~-p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+++... ...+..+++|++|++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 887432 245777888888888888876
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.4e-15 Score=157.45 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=64.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCC-CCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTE-FNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~ 647 (755)
+.|||||++.+..++.|+||||+||+|+||+||+.|+....... ...........+. ..+.. ........
T Consensus 177 ~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~---~~~~~~~~i~~~~------~~~~~~~~~~~s~~ 247 (335)
T d2ozaa1 177 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA---ISPGMKTRIRMGQ------YEFPNPEWSEVSEE 247 (335)
T ss_dssp CSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC-----------CCCSCS------SSCCTTHHHHSCHH
T ss_pred cccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHH---HHHHHHHHHhcCC------CCCCCcccccCCHH
Confidence 57999999999999999999999999999999999986432211 1111111111111 01110 01122346
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+.++...|++.+|++|||+.|+++
T Consensus 248 ~~~li~~~L~~dP~~R~s~~eil~ 271 (335)
T d2ozaa1 248 VKMLIRNLLKTEPTQRMTITEFMN 271 (335)
T ss_dssp HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHHHc
Confidence 778999999999999999999986
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.2e-15 Score=154.70 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=62.6
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEALRV 648 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 648 (755)
+.|||||++.+..++.++||||+||+++||+||+.|+......+ +. .....+.. .+ +......+
T Consensus 169 ~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~---~~----~~i~~~~~------~~---p~~~s~~~ 232 (337)
T d1o6la_ 169 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER---LF----ELILMEEI------RF---PRTLSPEA 232 (337)
T ss_dssp GGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH----HHHHHCCC------CC---CTTSCHHH
T ss_pred HHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH---HH----HHHhcCCC------CC---CccCCHHH
Confidence 57999999999999999999999999999999999997654322 11 11222221 11 11112345
Q ss_pred HHHHHHhcccCCCCCCC-----HHHHHH
Q 004413 649 IGVALLCTQASPMMRPP-----MSRVVA 671 (755)
Q Consensus 649 ~~l~~~C~~~~p~~RPs-----m~~v~~ 671 (755)
.++...|++.+|.+||+ ..|+.+
T Consensus 233 ~dli~~~L~~dP~~R~~~~~~~~~eil~ 260 (337)
T d1o6la_ 233 KSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHHhhccCCchhhcccccccHHHHHc
Confidence 67889999999999995 666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-14 Score=148.01 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=158.8
Q ss_pred EecCCcCcCCCchhhcCCCCCCEEEccCccCCCC-CcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC-C
Q 004413 4 SVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGT-LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA-P 81 (755)
Q Consensus 4 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~ 81 (755)
.++...+...+. ......+|++|||++|.++.. +...+.++++|++|+|++|.+.+..+..+.++++|++|++++| .
T Consensus 29 rl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~ 107 (284)
T d2astb2 29 RCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107 (284)
T ss_dssp ECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS
T ss_pred eccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccc
Confidence 344444433222 234557999999999988743 3455788999999999999988777788999999999999996 4
Q ss_pred CCCC-cchhhcCCCCCcEEEccCC-CCCCC-CCccccC-CCCCCeeecCCCC--CCCCChh-hhcCCCCCCEEEeeCc-c
Q 004413 82 FTGK-IPDFIGNWTKLKSLRFQGN-SFQGP-IPSSLSK-LASLDSLRISDIY--NVSSSLD-FVMSLKNLTDLSLRNA-L 153 (755)
Q Consensus 82 l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~-l~~L~~L~l~~n~--~~~~~~~-~l~~l~~L~~L~L~~n-~ 153 (755)
++.. +...+.++++|++|++++| .++.. +...+.. .++|+.|+++++. +...... ....+++|++|++++| .
T Consensus 108 itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~ 187 (284)
T d2astb2 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187 (284)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence 5532 2333567899999999986 44421 1222333 4789999998753 2222222 3467899999999986 5
Q ss_pred ccCCCCccccCCCCCCEEeCCCC-CCCCCCcccccCCCCCCEEEccCCcCCCCCCcccCCCCCEEEeecCcCCCCCcccc
Q 004413 154 ITGSIPSGIGELQNLQTLDLSFN-NLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWV 232 (755)
Q Consensus 154 l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~g~ip~~~ 232 (755)
+++.....+..+++|++|+|++| .+++.....+..+++|+.|+++++ ++...-......+..|.+..+.+++..++.+
T Consensus 188 itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~~~~~~ 266 (284)
T d2astb2 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTI 266 (284)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCCCCCcc
Confidence 77777778889999999999995 677777778889999999999887 4321111112334445567777776555443
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.45 E-value=1.1e-14 Score=148.20 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=63.7
Q ss_pred ccccchhhhhc------CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCH
Q 004413 569 HGYLAPEYAMR------GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFND 642 (755)
Q Consensus 569 ~gy~aPE~~~~------~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~ 642 (755)
..|+|||++.+ ..++.|+||||+||+++||+||+.|+......+ +...+.++... ...+....++
T Consensus 173 ~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~-------~~~~i~~~~~~-~~~~~~~~~s- 243 (277)
T d1phka_ 173 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML-------MLRMIMSGNYQ-FGSPEWDDYS- 243 (277)
T ss_dssp GGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-------HHHHHHHTCCC-CCTTTGGGSC-
T ss_pred CCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHH-------HHHHHHhCCCC-CCCcccccCC-
Confidence 47999999863 457889999999999999999999998654322 11222222211 1111112223
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 643 KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 643 ~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.++.+++.+|++.+|.+|||+.||++
T Consensus 244 ---~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 244 ---DTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp ---HHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ---HHHHHHHHHHccCChhHCcCHHHHHc
Confidence 35778899999999999999999853
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-14 Score=151.17 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=63.6
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCC----CC-----C
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDP----TL-----T 638 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~----~l-----~ 638 (755)
..|+|||.+... .++.|+|||||||+++||+||+.|++.....+....................... .+ .
T Consensus 185 ~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T d3blha1 185 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQ 264 (318)
T ss_dssp GGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSC
T ss_pred HHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccc
Confidence 469999998765 6899999999999999999999999865543322211111100000000000000 00 0
Q ss_pred CCCHH-H------HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 EFNDK-E------ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ~~~~~-~------~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..... . ...+.++..+|++.||++|||+.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~ 304 (318)
T d3blha1 265 KRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 304 (318)
T ss_dssp CBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence 11111 1 123567899999999999999999974
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.3e-15 Score=153.18 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=62.9
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccC----------CCC
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVD----------PTL 637 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d----------~~l 637 (755)
..|+|||...... ++.++|||||||+++||+||+.|+......+. +.. +.... +...+... +..
T Consensus 166 ~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~--~~~-i~~~~--~~~~~~~~~~~~~~~~~~~~~ 240 (298)
T d1gz8a_ 166 LWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ--LFR-IFRTL--GTPDEVVWPGVTSMPDYKPSF 240 (298)
T ss_dssp CTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHH-HHHHH--CCCCTTTSTTGGGSTTCCTTS
T ss_pred ceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHH--HHH-HHHhc--CCCchhhcccccccccccccc
Confidence 5799999876654 58999999999999999999999976543321 111 11111 11111000 000
Q ss_pred ---CCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 ---TEFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ---~~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..... .....+.++...|++.+|.+|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~ 282 (298)
T d1gz8a_ 241 PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282 (298)
T ss_dssp CCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 00010 11245677889999999999999999975
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.44 E-value=9.5e-15 Score=149.70 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=63.3
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc------cccc--cCCCC--
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ------SLGL--VDPTL-- 637 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~------~~~~--~d~~l-- 637 (755)
..|+|||.+.. ..++.++||||+||+++||+||+.|+......+.. .. +........ ..+. .+...
T Consensus 164 ~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~--~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (286)
T d1ob3a_ 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQL--MR-IFRILGTPNSKNWPNVTELPKYDPNFTV 240 (286)
T ss_dssp CTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HH-HHHHHCCCCTTTSTTGGGSTTCCTTCCC
T ss_pred chhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHH--HH-HHHhhCCCChhhccchhhhhhccccccc
Confidence 46999998865 56799999999999999999999999765433221 11 111110000 0000 01101
Q ss_pred ------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 ------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..........+.++..+|++.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~ 280 (286)
T d1ob3a_ 241 YEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (286)
T ss_dssp CCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0111112245678899999999999999999863
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3e-15 Score=155.81 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCC-CCCCHHHHHH
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTL-TEFNDKEALR 647 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~ 647 (755)
..|+|||...+..++.|+||||+||+++||+||+.|+......+ +. .... ++... ++... ... ...
T Consensus 167 ~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~---~~---~~i~-~~~~~--~~~~~~~~~----s~~ 233 (321)
T d1tkia_ 167 PEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ---II---ENIM-NAEYT--FDEEAFKEI----SIE 233 (321)
T ss_dssp GGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---HHHH-HTCCC--CCHHHHTTS----CHH
T ss_pred cccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH---HH---HHHH-hCCCC--CChhhccCC----CHH
Confidence 57999999999999999999999999999999999997654322 11 1111 11110 01000 112 234
Q ss_pred HHHHHHHhcccCCCCCCCHHHHHH--HHhc
Q 004413 648 VIGVALLCTQASPMMRPPMSRVVA--MLAG 675 (755)
Q Consensus 648 ~~~l~~~C~~~~p~~RPsm~~v~~--~L~~ 675 (755)
+.++...|++.||.+|||+.|+++ .+.+
T Consensus 234 ~~~li~~~L~~dp~~R~s~~eil~hp~~~~ 263 (321)
T d1tkia_ 234 AMDFVDRLLVKERKSRMTASEALQHPWLKQ 263 (321)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHHSHHHHS
T ss_pred HHHHHHHHccCChhHCcCHHHHhcCHhhcc
Confidence 677899999999999999999986 4543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.41 E-value=1.8e-14 Score=151.72 Aligned_cols=235 Identities=20% Similarity=0.206 Sum_probs=160.4
Q ss_pred CchhhcCCCCCCEEEccCccCCCC----CcccccCCccCcEEEccccCCCCC----------CchhhhcCCCCCEEEccC
Q 004413 14 VPRELGNLKELTVLSFGNNNFSGT----LPPEIGNLAKLEQLYLNSWGAGGE----------IPSTYAKLRNMQTLWASD 79 (755)
Q Consensus 14 ~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~L~~ 79 (755)
+...+.+...|+.|+|++|.+... +...+...++|+.|+++++..... +...+..+++|++|+|++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 345567788899999999987532 334466778999999987755322 123345678899999999
Q ss_pred CCCCCC----cchhhcCCCCCcEEEccCCCCCCCCC----cc---------ccCCCCCCeeecCCCCCCCCChh----hh
Q 004413 80 APFTGK----IPDFIGNWTKLKSLRFQGNSFQGPIP----SS---------LSKLASLDSLRISDIYNVSSSLD----FV 138 (755)
Q Consensus 80 n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p----~~---------l~~l~~L~~L~l~~n~~~~~~~~----~l 138 (755)
|.++.. +...+...++|++|++++|.+..... .. ....+.|+.|.+++|.+...... .+
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l 182 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence 988754 34445567889999999887752111 11 13467888999888876654433 45
Q ss_pred cCCCCCCEEEeeCccccCC-----CCccccCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCCc-
Q 004413 139 MSLKNLTDLSLRNALITGS-----IPSGIGELQNLQTLDLSFNNLTGQ----IPRTLFNIGSLNYLFLGNNSLSGTLPT- 208 (755)
Q Consensus 139 ~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~- 208 (755)
...+.|+.|+|++|.+... +...+..+++|+.|+|++|.++.. +...+..+++|+.|+|++|.|++....
T Consensus 183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~ 262 (344)
T d2ca6a1 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262 (344)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence 6678899999999987642 344567788899999999988643 345667888999999999988753111
Q ss_pred -------ccCCCCCEEEeecCcCCCC----Cccccc----ccccccccccccccC
Q 004413 209 -------QKSENLQNIDLSYNHLSGP----FPSWVT----SNLQMNLVANNFTFD 248 (755)
Q Consensus 209 -------~~~~~L~~L~Ls~N~l~g~----ip~~~~----~~~~l~l~~n~~~~~ 248 (755)
.....|++||+++|.|+.. +...+. ....|++++|.+...
T Consensus 263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~ 317 (344)
T d2ca6a1 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317 (344)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence 1225789999999988742 222221 223478888887644
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.2e-13 Score=128.26 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 004413 18 LGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK 97 (755)
Q Consensus 18 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 97 (755)
+.++.+|+.|+|++|+|+ .++..+..+++|++|+|++|.|... +.|..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 456666777777777776 4455556666777777777766532 2356666677777777766643334445566666
Q ss_pred EEEccCCCCCCCCC--ccccCCCCCCeeecCCCC
Q 004413 98 SLRFQGNSFQGPIP--SSLSKLASLDSLRISDIY 129 (755)
Q Consensus 98 ~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~ 129 (755)
+|++++|+++. ++ ..+..+++|++|++++|.
T Consensus 91 ~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 91 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSG
T ss_pred cceeccccccc-cccccccccccccchhhcCCCc
Confidence 66666666652 22 223344444444444433
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=7.9e-13 Score=116.60 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=75.6
Q ss_pred CEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCC
Q 004413 25 TVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN 104 (755)
Q Consensus 25 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 104 (755)
|+|+|++|+++ .++ .+.++++|++|++++|.++ .+|..|..+++|+.|++++|.++. +| .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 57888888887 444 4788888888888888885 467778888888888888888884 44 4788888888888888
Q ss_pred CCCCCC-CccccCCCCCCeeecCCCCCC
Q 004413 105 SFQGPI-PSSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 105 ~l~~~~-p~~l~~l~~L~~L~l~~n~~~ 131 (755)
+++... ...+..+++|+.|++++|.+.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 887332 234666666666666666543
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8.4e-14 Score=146.67 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH-----HHhhcC----------ccccc
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW-----NLHENN----------QSLGL 632 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~-----~~~~~~----------~~~~~ 632 (755)
..|+|||.+.+ ..++.++||||+||+++||+||+.|+................ ..+... ...+.
T Consensus 182 ~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (346)
T d1cm8a_ 182 RWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 261 (346)
T ss_dssp GGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCC
T ss_pred ccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcc
Confidence 57999999876 457999999999999999999999997654332211111000 000000 00001
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 633 VDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 633 ~d~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
....+..........+.++...|++.+|.+|||+.|+++
T Consensus 262 ~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~ 300 (346)
T d1cm8a_ 262 EKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 300 (346)
T ss_dssp CCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 011111111111234567889999999999999999986
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3e-13 Score=125.45 Aligned_cols=112 Identities=22% Similarity=0.146 Sum_probs=69.6
Q ss_pred cccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCCCCC
Q 004413 41 EIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 120 (755)
Q Consensus 41 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 120 (755)
.|.++.+|++|+|++|+|+.. +..+..+++|+.|+|++|.++ .++ .|..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 355677788888888888543 555677788888888888777 343 46777788888888887774434444556666
Q ss_pred CeeecCCCCCCCCC-hhhhcCCCCCCEEEeeCcccc
Q 004413 121 DSLRISDIYNVSSS-LDFVMSLKNLTDLSLRNALIT 155 (755)
Q Consensus 121 ~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~ 155 (755)
+.|++++|.+.... ...+..+++|++|++++|.++
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCccc
Confidence 66666665554332 123444444444444444443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.38 E-value=5.5e-14 Score=148.00 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=165.9
Q ss_pred CeEEecCCcCcCC----CchhhcCCCCCCEEEccCccCCCC----------CcccccCCccCcEEEccccCCCCCC----
Q 004413 1 MLLSVAHNVFSGS----VPRELGNLKELTVLSFGNNNFSGT----------LPPEIGNLAKLEQLYLNSWGAGGEI---- 62 (755)
Q Consensus 1 ~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~L~~n~l~~~~---- 62 (755)
+.|+|++|.|+.. +-..+..+++|+.|+++++..... +...+..+++|++|+|++|.+....
T Consensus 34 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 113 (344)
T d2ca6a1 34 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 113 (344)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred CEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccch
Confidence 4799999998643 334567789999999998865421 2234567889999999999987653
Q ss_pred chhhhcCCCCCEEEccCCCCCCCcc----h---------hhcCCCCCcEEEccCCCCCCC----CCccccCCCCCCeeec
Q 004413 63 PSTYAKLRNMQTLWASDAPFTGKIP----D---------FIGNWTKLKSLRFQGNSFQGP----IPSSLSKLASLDSLRI 125 (755)
Q Consensus 63 p~~~~~l~~L~~L~L~~n~l~~~~p----~---------~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l 125 (755)
...+..+++|++|++++|.+...-. . .....+.|+.|++++|.++.. +...+..++.|+.|++
T Consensus 114 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L 193 (344)
T d2ca6a1 114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 193 (344)
T ss_dssp HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred hhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccc
Confidence 3445678999999999998752111 1 123567899999999988733 2334566889999999
Q ss_pred CCCCCCCCC-----hhhhcCCCCCCEEEeeCccccCC----CCccccCCCCCCEEeCCCCCCCCCCcc----ccc--CCC
Q 004413 126 SDIYNVSSS-----LDFVMSLKNLTDLSLRNALITGS----IPSGIGELQNLQTLDLSFNNLTGQIPR----TLF--NIG 190 (755)
Q Consensus 126 ~~n~~~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~--~l~ 190 (755)
++|.+.... ...+..+++|+.|+|++|.++.. +...+..+++|++|+|++|.+++.... .+. ..+
T Consensus 194 ~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~ 273 (344)
T d2ca6a1 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 273 (344)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred ccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCC
Confidence 998876432 23467789999999999998643 445677899999999999999864333 333 346
Q ss_pred CCCEEEccCCcCCCCC----Ccc---cCCCCCEEEeecCcCCC
Q 004413 191 SLNYLFLGNNSLSGTL----PTQ---KSENLQNIDLSYNHLSG 226 (755)
Q Consensus 191 ~L~~L~Ls~N~l~~~~----p~~---~~~~L~~L~Ls~N~l~g 226 (755)
.|+.|++++|.|+... ... ..++|+.|+|++|.|..
T Consensus 274 ~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 7999999999987421 111 23689999999999974
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7.5e-14 Score=147.19 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=63.4
Q ss_pred ccccchhhhhc-CCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHH-------HHhhc--CccccccCCCCC
Q 004413 569 HGYLAPEYAMR-GHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAW-------NLHEN--NQSLGLVDPTLT 638 (755)
Q Consensus 569 ~gy~aPE~~~~-~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~-------~~~~~--~~~~~~~d~~l~ 638 (755)
..|+|||.+.. ..++.|+||||+||+++||+||+.|+......+. +...+. +.+.. ....+..-+...
T Consensus 186 ~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~--l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 263 (350)
T d1q5ka_ 186 RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQ--LVEIIKVLGTPTREQIREMNPNYTEFKFPQIK 263 (350)
T ss_dssp TTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCC---CCCCCCCC
T ss_pred ccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHH--HHHHHHHhCCChHHhhhhhccchhhccccccc
Confidence 46999998764 5789999999999999999999999976543322 111111 00000 000000001110
Q ss_pred ------CCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 639 ------EFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 639 ------~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.........+.++..+|++.||++|||+.|+++
T Consensus 264 ~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 302 (350)
T d1q5ka_ 264 AHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 302 (350)
T ss_dssp CCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 011112235677889999999999999999975
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.4e-13 Score=142.37 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=66.1
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHH---------HH-------HHHHhhcCc-c--
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL---------EW-------AWNLHENNQ-S-- 629 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~---------~~-------~~~~~~~~~-~-- 629 (755)
..|+|||++.+..++.++||||+||+++||++|+.|+............ ++ ......... .
T Consensus 182 ~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
T d2b1pa1 182 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 261 (355)
T ss_dssp CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCC
T ss_pred ccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccc
Confidence 4699999999999999999999999999999999998654322111000 00 011111100 0
Q ss_pred ---ccccCCCC----CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 630 ---LGLVDPTL----TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 630 ---~~~~d~~l----~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+.... ..........+.++..+|++.||++|||+.||++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~ 310 (355)
T d2b1pa1 262 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 310 (355)
T ss_dssp CCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00010011 1112233456788999999999999999999974
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-13 Score=141.79 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=62.2
Q ss_pred ccccchhhhhcCC-CCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcC---c---cccccC-------
Q 004413 569 HGYLAPEYAMRGH-LTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENN---Q---SLGLVD------- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~-~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~---~---~~~~~d------- 634 (755)
..|+|||.+.... ++.|+||||+||+++||+||+.|+........ ...-+....... . .....+
T Consensus 165 ~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (292)
T d1unla_ 165 LWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMY 242 (292)
T ss_dssp GGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHH--HHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCC
T ss_pred cchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHH--HHHHHHhhcCCCChhhhhhhhhcccccccccc
Confidence 4689999887665 69999999999999999999999754433221 111111111110 0 000000
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 ---PTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ---~~l~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.............+.++..+|++.||.+|||+.||++
T Consensus 243 ~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~ 282 (292)
T d1unla_ 243 PATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0001111122235667888999999999999999864
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=7.2e-14 Score=145.23 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred ccccchhhhhcC--CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCccccccCCCCCCCCHHHHH
Q 004413 569 HGYLAPEYAMRG--HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLVDPTLTEFNDKEAL 646 (755)
Q Consensus 569 ~gy~aPE~~~~~--~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 646 (755)
..|+|||.+... .++.|+||||+||+|+||+||+.|+......+.. .-+.+..... .+.+ +.....
T Consensus 194 ~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~---~~i~~~~~~~------~~~~---~~~~s~ 261 (322)
T d1vzoa_ 194 IEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ---AEISRRILKS------EPPY---PQEMSA 261 (322)
T ss_dssp CTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH---HHHHHHHHHC------CCCC---CTTSCH
T ss_pred cccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHHHhcccC------CCCC---cccCCH
Confidence 569999998754 5788999999999999999999998654332211 1111111111 1111 122334
Q ss_pred HHHHHHHHhcccCCCCCCC-----HHHHH
Q 004413 647 RVIGVALLCTQASPMMRPP-----MSRVV 670 (755)
Q Consensus 647 ~~~~l~~~C~~~~p~~RPs-----m~~v~ 670 (755)
++.++...|++.+|.+||| +.|+.
T Consensus 262 ~~~~li~~~l~~dP~~R~s~~~~t~~eil 290 (322)
T d1vzoa_ 262 LAKDLIQRLLMKDPKKRLGCGPRDADEIK 290 (322)
T ss_dssp HHHHHHHHHTCSSGGGSTTSSTTTHHHHH
T ss_pred HHHHHHHHHcccCHHHcCCCCcccHHHHH
Confidence 6777889999999999995 66765
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.7e-13 Score=142.48 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=63.2
Q ss_pred ccccchhhhh-cCCCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCcc----------ccccCCCC
Q 004413 569 HGYLAPEYAM-RGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS----------LGLVDPTL 637 (755)
Q Consensus 569 ~gy~aPE~~~-~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~d~~l 637 (755)
..|+|||.+. ...++.|+||||+||+++||+||+.|+......+.......+......... ...-.+..
T Consensus 176 ~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (345)
T d1pmea_ 176 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHK 255 (345)
T ss_dssp GGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCC
T ss_pred ceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCcc
Confidence 3699999885 456789999999999999999999999765433222111111000000000 00000111
Q ss_pred CCCCHHH-----HHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 638 TEFNDKE-----ALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 638 ~~~~~~~-----~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
...+... ..++.++...|++.||.+|||+.|+++
T Consensus 256 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~ 294 (345)
T d1pmea_ 256 NKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 294 (345)
T ss_dssp CCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1111111 125678999999999999999999975
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=5.9e-13 Score=140.99 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=65.9
Q ss_pred ccccchhhhhcCCCCccceeeeehheeehhhhCCcCCCCCchhh----HHHHHHHHHHH-------hhcCc-cccccC--
Q 004413 569 HGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDME----KIYLLEWAWNL-------HENNQ-SLGLVD-- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~~~t~ksDVysfGvvllElltg~~p~~~~~~~~----~~~l~~~~~~~-------~~~~~-~~~~~d-- 634 (755)
..|+|||......++.|+||||+||+++||+||+.|+....... ...+..++... ...+. .....+
T Consensus 193 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 272 (362)
T d1q8ya_ 193 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 272 (362)
T ss_dssp GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC-
T ss_pred ccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccc
Confidence 47999999999999999999999999999999999986432211 11122211110 00000 000000
Q ss_pred ---CCC---------------CCCCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 ---PTL---------------TEFNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ---~~l---------------~~~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
..+ ..........+.++..+|++.||.+|||+.|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~ 327 (362)
T d1q8ya_ 273 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 327 (362)
T ss_dssp -CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred hhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 1223456677889999999999999999999975
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.3e-13 Score=141.30 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=62.1
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHHHHHHHHHHHhhcCc--c---------ccccC--
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ--S---------LGLVD-- 634 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~~l~~~~~~~~~~~~--~---------~~~~d-- 634 (755)
..|+|||..... .++.++||||+||+++||+||+.|+.......... .+........ . .....
T Consensus 182 ~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (348)
T d2gfsa1 182 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLK---LILRLVGTPGAELLKKISSESARNYIQSL 258 (348)
T ss_dssp HHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH---HHHHHHCCCCHHHHTTCCCHHHHHHHTTS
T ss_pred ccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHH---HHHHhcCCCChHHhhhccchhhhhhhhhc
Confidence 459999987665 56899999999999999999999997654322211 1111100000 0 00000
Q ss_pred CCCCCCCH-----HHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PTLTEFND-----KEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~l~~~~~-----~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
+....... .....+.++..+|++.||.+|||+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~ 300 (348)
T d2gfsa1 259 TQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 300 (348)
T ss_dssp CCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence 00111111 11234667889999999999999999975
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7e-14 Score=152.44 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=77.0
Q ss_pred CeEEecCCcCcCCC-chhhcCCCCCCEEEccCccCCC----CCcccccCCccCcEEEccccCCCCCC----chhhh-cCC
Q 004413 1 MLLSVAHNVFSGSV-PRELGNLKELTVLSFGNNNFSG----TLPPEIGNLAKLEQLYLNSWGAGGEI----PSTYA-KLR 70 (755)
Q Consensus 1 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~-~l~ 70 (755)
++||+++|++++.. ..-+..+++|++|+|++|.++. .++..+..+++|++|+|++|.|+... ...+. ...
T Consensus 5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~ 84 (460)
T d1z7xw1 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 84 (460)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCC
Confidence 47899999998543 3446678889999999998873 23455678889999999988875321 12222 234
Q ss_pred CCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCCCCC
Q 004413 71 NMQTLWASDAPFTGK----IPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 71 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+|++|+|++|+++.. ++..+..+++|++|+|++|.++
T Consensus 85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 799999999988743 4556777889999999888764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=2e-13 Score=131.20 Aligned_cols=113 Identities=20% Similarity=0.244 Sum_probs=57.9
Q ss_pred CcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCCCccccCC
Q 004413 38 LPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKL 117 (755)
Q Consensus 38 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 117 (755)
++..+..+++|++|+|++|+|+. ++ .+..+++|++|+|++|.++ .++..+..+++|++|++++|.++. + ..+..+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence 44555566666666666666543 22 3555666666666666655 344444444456666666665552 2 224444
Q ss_pred CCCCeeecCCCCCCCCC-hhhhcCCCCCCEEEeeCcccc
Q 004413 118 ASLDSLRISDIYNVSSS-LDFVMSLKNLTDLSLRNALIT 155 (755)
Q Consensus 118 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~ 155 (755)
++|+.|++++|.+.... ...+..+++|+.|+|++|.+.
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 55555555544443321 123445555555555555443
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.19 E-value=2.2e-12 Score=134.53 Aligned_cols=103 Identities=8% Similarity=0.008 Sum_probs=62.7
Q ss_pred ccccchhhhhcC-CCCccceeeeehheeehhhhCCcCCCCCchhhHH--HH---------HHHHHHHhhcC--ccccccC
Q 004413 569 HGYLAPEYAMRG-HLTEKADVFSFGVAALEIISGRANSDNSLDMEKI--YL---------LEWAWNLHENN--QSLGLVD 634 (755)
Q Consensus 569 ~gy~aPE~~~~~-~~t~ksDVysfGvvllElltg~~p~~~~~~~~~~--~l---------~~~~~~~~~~~--~~~~~~d 634 (755)
..|+|||.+... .++.++||||+||+++|+++|+.|+......... .+ .+|....-... .......
T Consensus 193 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 272 (328)
T d3bqca1 193 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG 272 (328)
T ss_dssp GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCC
T ss_pred ccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcc
Confidence 459999998765 4799999999999999999999998654432111 01 11111100000 0001110
Q ss_pred CC--------CCC-CCHHHHHHHHHHHHHhcccCCCCCCCHHHHHH
Q 004413 635 PT--------LTE-FNDKEALRVIGVALLCTQASPMMRPPMSRVVA 671 (755)
Q Consensus 635 ~~--------l~~-~~~~~~~~~~~l~~~C~~~~p~~RPsm~~v~~ 671 (755)
.. ... ........+.++..+|++.+|.+|||++|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~ 318 (328)
T d3bqca1 273 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 318 (328)
T ss_dssp CCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 00 000 00111235678899999999999999999964
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.18 E-value=3e-13 Score=130.01 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=95.8
Q ss_pred CCchhhcCCCCCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcC
Q 004413 13 SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGN 92 (755)
Q Consensus 13 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 92 (755)
.+|.++..+++|++|+|++|+|+ .++ .|.++++|++|+|++|.++ .+|..+..+++|++|++++|+++. + ..+.+
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 45678999999999999999998 454 5889999999999999996 456666667889999999999984 4 35888
Q ss_pred CCCCcEEEccCCCCCCCCC--ccccCCCCCCeeecCCCCCC
Q 004413 93 WTKLKSLRFQGNSFQGPIP--SSLSKLASLDSLRISDIYNV 131 (755)
Q Consensus 93 l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~~ 131 (755)
+++|+.|++++|+++. ++ ..+..+++|+.|++++|.+.
T Consensus 114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccccchhcc-ccccccccCCCccceeecCCCccc
Confidence 9999999999999984 33 46889999999999998754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.2e-12 Score=142.33 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=158.0
Q ss_pred CeEEecCCcCcC----CCchhhcCCCCCCEEEccCccCCCC----Cccccc-CCccCcEEEccccCCCCC----Cchhhh
Q 004413 1 MLLSVAHNVFSG----SVPRELGNLKELTVLSFGNNNFSGT----LPPEIG-NLAKLEQLYLNSWGAGGE----IPSTYA 67 (755)
Q Consensus 1 ~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~L~~n~l~~~----~p~~~~ 67 (755)
++|+|++|+|+. .+...+..+++|+.|+|++|.|+.. +...+. ...+|++|+|++|+++.. ++..+.
T Consensus 30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~ 109 (460)
T d1z7xw1 30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109 (460)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh
Confidence 578999999873 3456678899999999999988632 222232 235799999999998654 345677
Q ss_pred cCCCCCEEEccCCCCCCCcc---------------------------------hhhcCCCCCcEEEccCC----------
Q 004413 68 KLRNMQTLWASDAPFTGKIP---------------------------------DFIGNWTKLKSLRFQGN---------- 104 (755)
Q Consensus 68 ~l~~L~~L~L~~n~l~~~~p---------------------------------~~~~~l~~L~~L~L~~n---------- 104 (755)
.+++|++|++++|.++.... ..+.....++.++++++
T Consensus 110 ~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~ 189 (460)
T d1z7xw1 110 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 189 (460)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccc
Confidence 88999999999987642100 00111223444443332
Q ss_pred -------------------CCCC---------------------------------CCCccccCCCCCCeeecCCCCCCC
Q 004413 105 -------------------SFQG---------------------------------PIPSSLSKLASLDSLRISDIYNVS 132 (755)
Q Consensus 105 -------------------~l~~---------------------------------~~p~~l~~l~~L~~L~l~~n~~~~ 132 (755)
.+.. ...........|+.|++++|.+..
T Consensus 190 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~ 269 (460)
T d1z7xw1 190 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 269 (460)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccc
Confidence 1110 000111234578888888877654
Q ss_pred CCh----hhhcCCCCCCEEEeeCccccCCCCcc-----ccCCCCCCEEeCCCCCCCCCCcc----cccCCCCCCEEEccC
Q 004413 133 SSL----DFVMSLKNLTDLSLRNALITGSIPSG-----IGELQNLQTLDLSFNNLTGQIPR----TLFNIGSLNYLFLGN 199 (755)
Q Consensus 133 ~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~ 199 (755)
... ..+...+.++.+++++|.+++..... ......|+.+++++|.++..... .+..+++|+.|+|++
T Consensus 270 ~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~ 349 (460)
T d1z7xw1 270 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 349 (460)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred cccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheee
Confidence 332 24566788999999999886432211 12346899999999998864333 345667899999999
Q ss_pred CcCCCC----CCcc---cCCCCCEEEeecCcCCCC----Cccccc---cccccccccccccc
Q 004413 200 NSLSGT----LPTQ---KSENLQNIDLSYNHLSGP----FPSWVT---SNLQMNLVANNFTF 247 (755)
Q Consensus 200 N~l~~~----~p~~---~~~~L~~L~Ls~N~l~g~----ip~~~~---~~~~l~l~~n~~~~ 247 (755)
|++++. ++.. ..+.|++|+|++|.|+.. ++..+. ....|++++|+++.
T Consensus 350 N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence 998742 2211 235799999999999742 333332 23358999998764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=5.5e-11 Score=109.07 Aligned_cols=109 Identities=14% Similarity=0.045 Sum_probs=73.8
Q ss_pred CCCCCCEEEccCccCCCCCcccccCCccCcEEEccccC-CCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 004413 20 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 98 (755)
Q Consensus 20 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 98 (755)
.+...+.++.+++.+. ..|..+..+++|++|+|++|+ ++...+..|.++++|+.|+|++|+++...+..|.++++|++
T Consensus 6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 3445566777777776 456667777777777776553 65555566777777778888777777655667777777888
Q ss_pred EEccCCCCCCCCCccccCCCCCCeeecCCCCC
Q 004413 99 LRFQGNSFQGPIPSSLSKLASLDSLRISDIYN 130 (755)
Q Consensus 99 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 130 (755)
|+|++|+|+ .+|.......+|+.|+|++|.+
T Consensus 85 L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 85 LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp EECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred eeccCCCCc-ccChhhhccccccccccCCCcc
Confidence 888777777 4444433344677777776655
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.5e-10 Score=106.10 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=88.9
Q ss_pred eEEecCCcCcCCCchhhcCCCCCCEEEccCc-cCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCC
Q 004413 2 LLSVAHNVFSGSVPRELGNLKELTVLSFGNN-NFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDA 80 (755)
Q Consensus 2 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 80 (755)
.++.+++++. .+|..+..+++|+.|+|++| .++...+..|.++++|+.|+|++|+|+...+..|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 4778888887 56778999999999999866 588666778999999999999999998888889999999999999999
Q ss_pred CCCCCcchhhcCCCCCcEEEccCCCCC
Q 004413 81 PFTGKIPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 81 ~l~~~~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+++...+..|. ..+|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~~~-~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALESLSWKTVQ-GLSLQELVLSGNPLH 116 (156)
T ss_dssp CCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred CCcccChhhhc-cccccccccCCCccc
Confidence 99954444454 457999999999885
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.7e-08 Score=91.29 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCEEEccCccCCCCCcccccCCccCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCC--cchhhcCCCCCcEEE
Q 004413 23 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGK--IPDFIGNWTKLKSLR 100 (755)
Q Consensus 23 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ 100 (755)
+.+.|+++++... + .+..+..+..|+..++.. ..++..+.++++|++|+|++|+++.. ++..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC---c-hhhhccchhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 4566677665432 2 244444444454444333 23344456788888888888888743 345567788888888
Q ss_pred ccCCCCCCCCCccccCCCCCCeeecCCCCCCCCCh-------hhhcCCCCCCEEE
Q 004413 101 FQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSL-------DFVMSLKNLTDLS 148 (755)
Q Consensus 101 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-------~~l~~l~~L~~L~ 148 (755)
|++|.++...+-.+....+|+.|++++|.+..... ..+..+|+|+.||
T Consensus 98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred cccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 88888874322233345578888888887765432 2356788888775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.7e-07 Score=85.87 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=41.2
Q ss_pred cCcEEEccccCCCCCCchhhhcCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCCCCCCCC--CccccCCCCCCeee
Q 004413 47 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI--PSSLSKLASLDSLR 124 (755)
Q Consensus 47 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~ 124 (755)
..+.|+++++... ..+..+..+..|+..++... .++..+.++++|++|+|++|+++..- +..+..+++|+.|+
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence 3455666554321 12333333444444333222 33444456777777788877777421 23344555666666
Q ss_pred cCCCCCCCC
Q 004413 125 ISDIYNVSS 133 (755)
Q Consensus 125 l~~n~~~~~ 133 (755)
+++|.+...
T Consensus 98 Ls~N~i~~l 106 (162)
T d1koha1 98 LSGNELKSE 106 (162)
T ss_dssp CTTSCCCCG
T ss_pred cccCccccc
Confidence 665555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.61 E-value=1.4e-05 Score=72.91 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=55.2
Q ss_pred cCCCCCCEEEccCc-cCCCC----CcccccCCccCcEEEccccCCCC----CCchhhhcCCCCCEEEccCCCCCCC----
Q 004413 19 GNLKELTVLSFGNN-NFSGT----LPPEIGNLAKLEQLYLNSWGAGG----EIPSTYAKLRNMQTLWASDAPFTGK---- 85 (755)
Q Consensus 19 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~---- 85 (755)
.+.++|+.|+|+++ .++.. +-..+...++|++|+|++|.+.. .+...+...+.|++|+|++|.++..
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 34578888888764 45421 23345566778888888777753 2233455667777777777777632
Q ss_pred cchhhcCCCCCcEEEccCCCCC
Q 004413 86 IPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 86 ~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
+...+...++|++|+|++|.+.
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSC
T ss_pred HHHHHHhCCcCCEEECCCCcCC
Confidence 2334555566777777766554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.45 E-value=4.3e-05 Score=69.58 Aligned_cols=86 Identities=10% Similarity=0.173 Sum_probs=48.4
Q ss_pred CCccCcEEEcccc-CCCCC----CchhhhcCCCCCEEEccCCCCCC----CcchhhcCCCCCcEEEccCCCCCCC----C
Q 004413 44 NLAKLEQLYLNSW-GAGGE----IPSTYAKLRNMQTLWASDAPFTG----KIPDFIGNWTKLKSLRFQGNSFQGP----I 110 (755)
Q Consensus 44 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~ 110 (755)
+.++|++|+|+++ .+... +...+...+.|++|+|++|.+.. .+...+...+.|++|+|++|.++.. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4567888888763 34322 22345566777777777777652 2334445556777777777766632 1
Q ss_pred CccccCCCCCCeeecCCCC
Q 004413 111 PSSLSKLASLDSLRISDIY 129 (755)
Q Consensus 111 p~~l~~l~~L~~L~l~~n~ 129 (755)
...+...++|++|++++|.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhCCcCCEEECCCCc
Confidence 2234444555555555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.92 E-value=4e-05 Score=69.75 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=59.4
Q ss_pred hhcCCCCCCEEEccC-ccCCCC----CcccccCCccCcEEEccccCCCCC----CchhhhcCCCCCEEEccCCCCCCC--
Q 004413 17 ELGNLKELTVLSFGN-NNFSGT----LPPEIGNLAKLEQLYLNSWGAGGE----IPSTYAKLRNMQTLWASDAPFTGK-- 85 (755)
Q Consensus 17 ~l~~l~~L~~L~Ls~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-- 85 (755)
...+.+.|+.|+|++ +.++.. +-..+...++|++|+|++|.+... +...+...+.|+.|++++|.++..
T Consensus 12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~ 91 (166)
T d1io0a_ 12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 91 (166)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence 345667888888876 445421 233455667777777777776533 223345566777777777766532
Q ss_pred --cchhhcCCCCCcEEEcc--CCCCCC----CCCccccCCCCCCeeecC
Q 004413 86 --IPDFIGNWTKLKSLRFQ--GNSFQG----PIPSSLSKLASLDSLRIS 126 (755)
Q Consensus 86 --~p~~~~~l~~L~~L~L~--~n~l~~----~~p~~l~~l~~L~~L~l~ 126 (755)
+...+...++|+.++|+ +|.+.. .+...+...++|+.|++.
T Consensus 92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~ 140 (166)
T d1io0a_ 92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 140 (166)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence 22344555666654443 344432 122223344455555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.66 E-value=0.00016 Score=65.58 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=22.4
Q ss_pred hcCCCCCEEEccC-CCCCCC----cchhhcCCCCCcEEEccCCCCC
Q 004413 67 AKLRNMQTLWASD-APFTGK----IPDFIGNWTKLKSLRFQGNSFQ 107 (755)
Q Consensus 67 ~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 107 (755)
.+.++|++|+|++ +.++.. +...+...++|++|+|++|.++
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence 3456677777665 334421 2233445566666666666655
|