Citrus Sinensis ID: 004445

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750---

MIKMQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVSSILQCTTL

cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccc

cccEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccEEcccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHcccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHEEcccHHHcccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccc

mikmqeysnggggddggggggpaDLAKLQSIMHSIEIACSSIQMHVNPAAAEATILglcqspqpykaCQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMqhasspegyVQAKISSVAAQLMKRgwldftssdkeAFFSQVHQAVLGIHGVDTQFIGINFLESLvsefspstssamglprefHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWdfqfdtsgrkiSINVFSAgvrtetssskrseciivqpgpawcDALISSGHIVWLLNLYSALRQKfssegywldcpiAVSARKLIVQLCSltgtvfpsdngkmqEHHLLQLLSGilewvdppdVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLksirpfgtltLLSNLMCEVVKVLMMNnteegtwswEARDILLDTWTTLLVSLDstgrnvvlpLEVRNAAASLFALIVESELKVAsasamddngefnYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLhqgrgmidpteTLEELYSLLLITGhvladegegeipvvpnaiQTHFVDTIEAAKHPVVLLCGSIIKFaewsldpearasvfsPRLMEAIVWFLARWSQTylmpleefrdsstnlchdtgyqhqssTSRKALLSFFgehnqgkpvlDIIVRISMTtlvsypgekdlqELTCNQLLHALVRRKNVCVHLVALVSSILQCTTL

mikmqeysnggggddgggGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGvrtetssskrsecIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVssilqcttl

MIKMQEYSNggggddggggggPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVanarfqaaaairdaamrEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPtetleelyslllitGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVSSILQCTTL

*****************************SIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF*********LPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVR*********ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAI********MLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGY********KALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVSSILQC***

***************************LQSIMHSIEIAC************EATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTK*********SEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASA*AMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFA*************TLEELYSLLLITGHVLADEGEGEIPVVPNA**********AAKHPVVLLCGSIIKFAE***************LMEAIVWFLARWSQTYLMPLEEFRDSST**********************FGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVSSILQCTTL

********NGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE*********GLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG**********SECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT*********RKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALVSSILQCTTL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		753	2.2.26 [Sep-21-2011]
Q499Y0		1150	Exportin-4 OS=Xenopus lae	N/A	no	0.731	0.479	0.257	4e-38
Q802D3		1150	Exportin-4 OS=Danio rerio	yes	no	0.771	0.505	0.244	5e-36
Q9ESJ0		1151	Exportin-4 OS=Mus musculu	yes	no	0.844	0.552	0.250	2e-35
Q9C0E2		1151	Exportin-4 OS=Homo sapien	yes	no	0.844	0.552	0.250	4e-35
Q5ZMR9		1154	Exportin-4 OS=Gallus gall	yes	no	0.802	0.523	0.250	6e-34
Q54UP5		1133	Exportin-4 OS=Dictyosteli	yes	no	0.856	0.569	0.211	4e-19
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	no	0.393	0.272	0.214	5e-06
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	no	0.399	0.276	0.197	0.0002

>sp\|Q499Y0\|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1	Back alignment and function desciption

 Score =  160 bits (405), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 176/683 (25%), Positives = 306/683 (44%), Gaps = 132/683 (19%)

Query: 51  AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110
           AE   L   +S  P+  C+ ILE S+V    FQAA AI +A +REW  L     +SL  F
Sbjct: 36  AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95

Query: 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 170
            L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q
Sbjct: 96  LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152

Query: 171 FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 229
            +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +    +     +++ 
Sbjct: 153 TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211

Query: 230 IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 289
              +  A         L L +Q+L+W+F     GR   I +F +           S+ ++
Sbjct: 212 --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257

Query: 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349
           ++P  +W + L++S  +     ++  +R+         D  +A  + + + QL SL G +
Sbjct: 258 LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308

Query: 350 FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409
           FP +  + Q  +L   + G+L  ++        IE   SE+  +        I+ + T  
Sbjct: 309 FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352

Query: 410 VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 463
           VF R + +  P   F + +  L++L C   +   +     ++     EA D LL++W TL
Sbjct: 353 VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412

Query: 464 LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 506
           +       +                 ++  P   RN  A+  A     E +  +    DD
Sbjct: 413 VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469

Query: 507 NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 554
              F+          ++L+S  ++ R A D  +PLLT L  ER  RLH            
Sbjct: 470 RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519

Query: 555 -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 601
             G   ID  + L++LY     L+L+TG++LAD+ +GE P++P+ I      Q+  VD  
Sbjct: 520 SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578

Query: 602 -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 639
            T++    P               V+ L  ++++ +E     E+RA+      + SP++ 
Sbjct: 579 TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASE----VESRATRADLTHLLSPQMG 634

Query: 640 EAIVWFLARWSQTYLMPLEEFRD 662
           + IVWFL RW++TYL+  E+  D
Sbjct: 635 KDIVWFLKRWTKTYLLVDEKLYD 657

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Xenopus laevis (taxid: 8355)

>sp\|Q802D3\|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1	Back alignment and function description

>sp\|Q9ESJ0\|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2	Back alignment and function description

>sp\|Q9C0E2\|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZMR9\|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1	Back alignment and function description

>sp\|Q54UP5\|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		753
255561939		1165	protein with unknown function [Ricinus c	0.957	0.618	0.772	0.0
359488084		1123	PREDICTED: exportin-4-like [Vitis vinife	0.961	0.644	0.757	0.0
302143624		1176	unnamed protein product [Vitis vinifera]	0.956	0.612	0.754	0.0
356504127		1117	PREDICTED: exportin-4-like [Glycine max]	0.952	0.641	0.704	0.0
449449573		1121	PREDICTED: exportin-4-like [Cucumis sati	0.965	0.648	0.707	0.0
356571192		1117	PREDICTED: exportin-4-like [Glycine max]	0.961	0.648	0.693	0.0
334185076		1118	uncharacterized protein [Arabidopsis tha	0.944	0.635	0.687	0.0
297828948		1123	hypothetical protein ARALYDRAFT_317312 [	0.909	0.609	0.684	0.0
224145812		920	predicted protein [Populus trichocarpa]	0.819	0.670	0.674	0.0
7547108		1248	hypothetical protein [Arabidopsis thalia	0.810	0.488	0.621	0.0

>gi\|255561939\|ref\|XP_002521978.1\| protein with unknown function [Ricinus communis] gi\|223538782\|gb\|EEF40382.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/722 (77%), Positives = 629/722 (87%), Gaps = 1/722 (0%)

Query: 23  ADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARF 82
           AD+A+L S M +IE+ACSSIQMH+NPAAAEATI+ L QSP PYKACQFILENSQVANARF
Sbjct: 9   ADMAQLHSTMQAIELACSSIQMHMNPAAAEATIMSLNQSPHPYKACQFILENSQVANARF 68

Query: 83  QAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGW 142
           QAAAAIRDAA+REWSFLT D+KKSLI FCLC+VMQHA S +GYVQ K+SSVAAQL+KRGW
Sbjct: 69  QAAAAIRDAAIREWSFLTGDDKKSLISFCLCYVMQHAGSSDGYVQVKVSSVAAQLIKRGW 128

Query: 143 LDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 202
           LDFT+++KE FF QV+QAVLGIHG+D QF GINFLESLVSEFSPSTSSAMGLPREFHEQC
Sbjct: 129 LDFTAAEKETFFYQVNQAVLGIHGIDVQFSGINFLESLVSEFSPSTSSAMGLPREFHEQC 188

Query: 203 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTS 262
           R+SLEL+YLKTFYCWARDAA+ VTK+I ESD    EVK CTA LRL+ QI+NWDF+++  
Sbjct: 189 RMSLELNYLKTFYCWARDAAVGVTKKITESDNEVPEVKVCTAGLRLMLQIMNWDFRYNIP 248

Query: 263 GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSS 322
             K  I+VFS GVR ++SS KRSEC++VQ GPAW D LISSGH+ WLL LY+ALR KF+ 
Sbjct: 249 ATKAGIDVFSPGVRADSSSLKRSECVVVQLGPAWRDVLISSGHVGWLLGLYAALRGKFAC 308

Query: 323 EGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQA 382
            GYWLDCPIAVSARKLIVQ CSLTGT+F  DN  +QE HLL LLSGI++W+DPPD V+QA
Sbjct: 309 GGYWLDCPIAVSARKLIVQFCSLTGTIFHPDNELIQEQHLLLLLSGIIQWIDPPDAVSQA 368

Query: 383 IESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNN 442
           IESGKSESEMLDGCRALLS+ATVTTPF FD+LLKSIRPFGTL LLS LMCEV+KVLM NN
Sbjct: 369 IESGKSESEMLDGCRALLSMATVTTPFAFDQLLKSIRPFGTLALLSTLMCEVIKVLMTNN 428

Query: 443 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASAS 502
           T+E TWSWEARDILLDTWTTLL+S+D TG N +LP E   AA++LFALIVESEL+VASAS
Sbjct: 429 TDEETWSWEARDILLDTWTTLLMSMDGTGGNPLLPPEGILAASNLFALIVESELRVASAS 488

Query: 503 AMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDP 562
           AM+D  + +YLQASISAMDERLSSYALIARAA+D T+PLL RLFSE F+RLHQGRG+IDP
Sbjct: 489 AMNDKDDSDYLQASISAMDERLSSYALIARAAVDVTIPLLARLFSECFSRLHQGRGIIDP 548

Query: 563 TETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAE 622
           T TLEELYSLLLITGHVLADEGEGE P+VP+ IQTHFVDT+EA KHP V+L   IIKFAE
Sbjct: 549 TPTLEELYSLLLITGHVLADEGEGETPLVPHTIQTHFVDTVEADKHPTVVLSSLIIKFAE 608

Query: 623 WSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRK 682
            SLDPE R SVFSPRLMEA++WFLARWS TYLMP EEFRDS+ N  HD  YQ +   SRK
Sbjct: 609 QSLDPEMRTSVFSPRLMEAVIWFLARWSCTYLMP-EEFRDSNINAGHDNEYQFRQLQSRK 667

Query: 683 ALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVA 742
           ALLSFFGEHNQGKPVLD IVRIS+TTL+SYPGEKDLQ LTC QLLH+LVRRKN+C+HLV 
Sbjct: 668 ALLSFFGEHNQGKPVLDTIVRISVTTLLSYPGEKDLQGLTCYQLLHSLVRRKNICIHLVV 727

Query: 743 LV 744
           L+
Sbjct: 728 LI 729

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488084\|ref\|XP_002266608.2\| PREDICTED: exportin-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302143624\|emb\|CBI22377.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356504127\|ref\|XP_003520850.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449449573\|ref\|XP_004142539.1\| PREDICTED: exportin-4-like [Cucumis sativus] gi\|449479730\|ref\|XP_004155691.1\| PREDICTED: exportin-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356571192\|ref\|XP_003553763.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|334185076\|ref\|NP_187099.6\| uncharacterized protein [Arabidopsis thaliana] gi\|332640567\|gb\|AEE74088.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297828948\|ref\|XP_002882356.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi\|297328196\|gb\|EFH58615.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224145812\|ref\|XP_002325773.1\| predicted protein [Populus trichocarpa] gi\|222862648\|gb\|EEF00155.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|7547108\|gb\|AAF63780.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		753
TAIR\|locus:4515103505		130	AT4G38092 "AT4G38092" [Arabido	0.136	0.792	0.572	1.8e-25
RGD\|1312015		1152	Xpo4 "exportin 4" [Rattus norv	0.309	0.202	0.279	1.8e-25
MGI\|MGI:1888526		1151	Xpo4 "exportin 4" [Mus musculu	0.309	0.202	0.279	4.7e-25
UNIPROTKB\|Q9C0E2		1151	XPO4 "Exportin-4" [Homo sapien	0.312	0.204	0.277	1.6e-24
ZFIN\|ZDB-GENE-030131-3062		1152	xpo4 "exportin 4" [Danio rerio	0.262	0.171	0.284	1.7e-24
UNIPROTKB\|E2QUP6		1151	XPO4 "Uncharacterized protein"	0.312	0.204	0.277	2.6e-24
UNIPROTKB\|F1MVW4		1153	XPO4 "Uncharacterized protein"	0.274	0.179	0.277	3.5e-24
UNIPROTKB\|F1P157		1146	XPO4 "Exportin-4" [Gallus gall	0.301	0.198	0.291	3.9e-24
UNIPROTKB\|Q5ZMR9		1154	XPO4 "Exportin-4" [Gallus gall	0.338	0.220	0.281	3.9e-24
UNIPROTKB\|F1RVA6		1002	XPO4 "Uncharacterized protein"	0.326	0.245	0.247	1.6e-14

TAIR\|locus:4515103505 AT4G38092 "AT4G38092" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 298 (110.0 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 59/103 (57%), Positives = 72/103 (69%)

Query:    35 IEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVXXXXXXXXXXXXXXXXX 94
             ++I+ S +Q++ NP AAEATIL L QSPQPYKAC++ILENSQV                 
Sbjct:    27 LDISLSFVQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANARFQAAAAIRKSAIR 86

Query:    95 EWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQL 137
             EWSFL  D+K  LI FCL +VMQHA+S EGYV +K+SSVAAQL
Sbjct:    87 EWSFLATDDKGGLISFCLGYVMQHANSSEGYVLSKVSSVAAQL 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD\|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002233001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (1141 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		753
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	99.98
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.9
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.86
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.85
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.63
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.38
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.13
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.98
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.7
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.65
KOG2081		559	consensus Nuclear transport regulator [Intracellul	98.45
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.96
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.86
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.43
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.22
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.91
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.54
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	94.65
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	90.13

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.7e-113  Score=924.39  Aligned_cols=618  Identities=19%  Similarity=0.274  Sum_probs=550.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCH
Q 004445           25 LAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA  101 (753)
Q Consensus        25 ~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~  101 (753)
                      |++|    ++||.+|+.+|++.+   |.+||+.|.+|.++|+++++|+.||++++.||.++.|+++|.+.+.++- .+|.
T Consensus         1 m~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl   75 (1082)
T KOG1410|consen    1 MQSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPL   75 (1082)
T ss_pred             CccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcH
Confidence            3577    999999999999876   8999999999999999999999999999999999999999999999974 7999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCC---chhHHHHHHHHHHcccCCchhHHHHHHHHH
Q 004445          102 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLE  178 (753)
Q Consensus       102 ~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~---~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~  178 (753)
                      +||.+||+|++||+.++++++++||+..++|++|+|+|+||+|.++.   +|+ .+.++.++++. ++.+||++|+.||+
T Consensus        76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLs  153 (1082)
T KOG1410|consen   76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILS  153 (1082)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHH
Confidence            99999999999999999889999999999999999999999997653   465 88999999986 67999999999999


Q ss_pred             HHHhhhCCCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccc
Q 004445          179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ  258 (753)
Q Consensus       179 ~lv~Efs~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~  258 (753)
                      ++|+||+....   +.|..+|||.+.+|||+.|++||.+++.+|+...+..++..   .+.+++.++|.+..+||+|||+
T Consensus       154 qLvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~---~q~~L~~~vL~L~l~Cl~FDfi  227 (1082)
T KOG1410|consen  154 QLVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR---AQLGLLMQVLKLNLNCLNFDFI  227 (1082)
T ss_pred             HHHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH---hHhhHHHHHHHHHhhhcccccc
Confidence            99999999876   88999999999999999999999999999998774333322   2668999999999999999999


Q ss_pred             cCCCCccchhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHH
Q 004445          259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL  338 (753)
Q Consensus       259 ~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~c  338 (753)
                      |++.||+                  +||.+|||+|++||..|.|++++++||++|..           +||+++..+++|
T Consensus       228 Gss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~s-----------lp~~~S~~alsc  278 (1082)
T KOG1410|consen  228 GSSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHS-----------LPPELSELALSC  278 (1082)
T ss_pred             ccccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhcc-----------CCchhhHHHHHH
Confidence            9999998                  99999999999999999999999999999987           378999999999


Q ss_pred             HHHHhcccCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHhhhc
Q 004445          339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKS  417 (753)
Q Consensus       339 L~qLaSl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~l~rL~~~~~~~~l~~~~~~  417 (753)
                      |+|+||+||++|++.   +|.+|+.+++.|++.|+++|.        |+++ .|||||||+|+||++||++.++..+-++
T Consensus       279 lvqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y  347 (1082)
T KOG1410|consen  279 LVQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVECY  347 (1082)
T ss_pred             HHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCCc
Confidence            999999999999665   599999999999999999877        8887 8999999999999999965555544322


Q ss_pred             cCchhhHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhccccccCCCCCCChHHhhhHHHHHHHHHHhhcc
Q 004445          418 IRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK  497 (753)
Q Consensus       418 ~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~~~~~~~~~p~~l~~~~~~I~~~Yi~srL~  497 (753)
                         ..+        +.++++||+.+.+.|+|+++|++|||..|+|||.|+||+|++  .|+-+..|+|+|+++||.||++
T Consensus       348 ---~e~--------irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~  414 (1082)
T KOG1410|consen  348 ---PEV--------IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQ  414 (1082)
T ss_pred             ---HHH--------HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhh
Confidence               122        357889999999999999999999999999999999999875  6898999999999999999999


Q ss_pred             cccccccCCCCccchhhhcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcCC--CCCCc--chhhh-hHHHH
Q 004445          498 VASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGR--GMIDP--TETLE-ELYSL  572 (753)
Q Consensus       498 ~~~~~~~~d~d~de~~~~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~~~~~l~~~~--~~~~~--~~~~E-~LhWL  572 (753)
                      .++..+.|+   -|++.||.+...+||+.++.+|||.|++||.+|+++|++..+.|++..  ++.++  ..+.| +|.||
T Consensus       415 sV~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wl  491 (1082)
T KOG1410|consen  415 SVEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWL  491 (1082)
T ss_pred             hhheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhh
Confidence            999877554   234556678999999999999999999999999999999999998742  22232  46778 99999


Q ss_pred             HHHHHhHhccCCCCcccccchhhhhhhhhhcccccChH-HHHHHHHHHHHHHhcCccccccCCCHHHHHHHHHHHHHHHH
Q 004445          573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPV-VLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ  651 (753)
Q Consensus       573 vli~G~~Lad~~~Ge~p~iP~~i~~~~~~~~~~~~d~v-v~L~~~v~~l~~~~l~~~~~~~~~SP~L~~a~lwfl~r~~~  651 (753)
                      |+|+|+++++++.|           .|.+    .+|.+ ++|+++|++++++. |.+.. ..+..+|+.|++|||++|||
T Consensus       492 v~lvgtvV~gk~t~-----------~Std----~~d~mDgEL~arvlql~nlm-dsr~~-~~~n~rle~ail~f~eqFRk  554 (1082)
T KOG1410|consen  492 VYLVGTVVGGKTTA-----------TSTD----EHDAMDGELSARVLQLVNLM-DSRLP-LKGNERLELAILHFLEQFRK  554 (1082)
T ss_pred             HHHhHHHhcceecc-----------cccc----hhhhhhhHHHHHHHHHHHhh-hcccc-hhhhHHHHHHHHHHHHHHHH
Confidence            99999999998753           2222    45666 89999999999985 87665 33668999999999999999


Q ss_pred             hhcCcccccccCCCCcCCCCCcccccchhhhHhHhhhcCCCChhhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHh
Q 004445          652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV  731 (753)
Q Consensus       652 ~Yl~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~fG~~~~~~~vl~~lv~ki~~nL~~w~~e~~v~~~t~~~Ll~~L~  731 (753)
                      +|++++.. +       ++++|.        ++.+.+|. +++..||+.+|+||.+|||+|++.++|++.|++ ||.+|+
T Consensus       555 ~YvgDQ~~-r-------sSkvY~--------rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLs-lf~dLs  616 (1082)
T KOG1410|consen  555 AYVGDQIQ-R-------SSKVYA--------RLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTLS-LFNDLS  616 (1082)
T ss_pred             HHHHHHHH-H-------HHHHHH--------HHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHHH-HHHHHh
Confidence            99999944 4       566777        47899999 789999999999999999999999999999997 999999


Q ss_pred             ccccccchhhhcccc
Q 004445          732 RRKNVCVHLVALVSS  746 (753)
Q Consensus       732 ~~~~~~~~l~~l~~~  746 (753)
                      .||+.+|+|+|++.-
T Consensus       617 ~GY~~~kkL~kl~~V  631 (1082)
T KOG1410|consen  617 LGYSAVKKLVKLDAV  631 (1082)
T ss_pred             hhHHHHHHHhcchhh
Confidence            999999999999973

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		753
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	1e-09
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	7e-09
2x19_B		963	Importin-13; nuclear transport, protein transport;	5e-08
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	6e-08
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-07
2x1g_F		971	Cadmus; transport protein, developmental protein,	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.0 bits (165), Expect = 9e-12
 Identities = 103/630 (16%), Positives = 192/630 (30%), Gaps = 166/630 (26%)

Query: 197 EFHEQCRISLEL---DYLKTFYCWARDAALSVTKQII---ESDAAASEVKACTAALRLLH 250
           E   Q +  L +    ++  F C  +D    + K I+   E D       A +  LRL  
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 251 QILNWD----FQFDTSGRKISINVFSAGVRTET-SSSKRSECIIVQPGPAWCDALISSGH 305
            +L+       +F     +I+     + ++TE    S  +   I Q    + D  + + +
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 306 IVWLLNLYSALRQ------------------------------------KFSSEGYWLDC 329
            V  L  Y  LRQ                                    K   + +WL+ 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 330 PIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE 389
               S   ++  L  L                L Q+        D    +   I S ++E
Sbjct: 190 KNCNSPETVLEMLQKL----------------LYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 390 SEML----DGCRALLSIATVTTPFV---FD---RLLKSIRPFGTLTLLSNLMCEVVKVLM 439
              L         LL +  V        F+   ++L + R       LS         + 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA---ATTTHIS 290

Query: 440 MNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVA 499
           +++        E + +LL  +  L            LP EV        ++I ES ++  
Sbjct: 291 LDHHSMTLTPDEVKSLLLK-Y--LDCRPQD------LPREVLTTNPRRLSIIAES-IR-- 338

Query: 500 SASAMDDNGEFNY------------LQASISAMD--ERLSSYALIARAAI---DATVP-- 540
                D    ++             +++S++ ++  E    +  +   ++    A +P  
Sbjct: 339 -----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTI 390

Query: 541 LLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFV 600
           LL+ ++ +            D    + +L+   L+       E    IP +   ++    
Sbjct: 391 LLSLIWFDVIKS--------DVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLE 440

Query: 601 DTIEAAKHPVVLLCGSIIK-FAEWSLDPEARASVFSPRLMEAIVWFLARWSQTY-LMPLE 658
           +  E A H  ++   +I K F    L P        P L +     +      + L  +E
Sbjct: 441 N--EYALHRSIVDHYNIPKTFDSDDLIP--------PYLDQYFYSHIG-----HHLKNIE 485

Query: 659 ------EFRDSSTN-------LCHDTGYQHQSSTSRKALLS---FFGEH-NQGKPVLDII 701
                  FR    +       + HD      +S S    L    F+  +     P  + +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 702 VRISMTTLVSYPGEKDLQELTCNQLLH-AL 730
           V   +  L     E++L       LL  AL
Sbjct: 545 VNAILDFLPKI--EENLICSKYTDLLRIAL 572

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		753
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.97
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.96
2x19_B		963	Importin-13; nuclear transport, protein transport;	99.94
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.94
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.92
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.92
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.89
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.36
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.34
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.04
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.77
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.28
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	85.8
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	80.78

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

Probab=99.97  E-value=2.1e-27  Score=290.07  Aligned_cols=425  Identities=14%  Similarity=0.158  Sum_probs=292.9

Q ss_pred             HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHhccCCchhHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 004445           33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF  110 (753)
Q Consensus        33 ~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~i~~~W~~l~~~~r~~lr~~  110 (753)
                      +.||+++.++|.|.+  |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+.+|+++|..||++
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~  107 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY  107 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence            788999999999854  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC-----CchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445          111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (753)
Q Consensus       111 ll~yl~~~~~~-----l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs  185 (753)
                      |++|+.+...+     .++.+++|+++++|.|.|++|++.    |++++.++.+.+.  .++.++..++.+|..+.+|..
T Consensus       108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~--~~~~~~~~~L~IL~~L~EEV~  181 (1073)
T 3gjx_A          108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASR--TSESLCQNNMVILKLLSEEVF  181 (1073)
T ss_dssp             HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHH
Confidence            99999985322     346778999999999999999984    9999999999997  377889999999999999965


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHhcccccccCCCCcc
Q 004445          186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK  265 (753)
Q Consensus       186 ~~~ss~~gl~~~~Hrk~k~sFe~~~L~~If~l~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~~~~~d~~  265 (753)
                      .....  .++-.+..+.|..++.. +..||+++..+|.+.           ....++..+|+++..+++|...+.     
T Consensus       182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~-----  242 (1073)
T 3gjx_A          182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY-----  242 (1073)
T ss_dssp             TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred             hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence            43211  23455677889999875 999999888887631           245788999999999999997654     


Q ss_pred             chhhhcccccccccCCCCCCccccccCCcchhHhhcccchHHHHHHHHHHHHhhcccCCCCCCcccHHHHHHHHHHHhcc
Q 004445          266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL  345 (753)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~cL~qLaSl  345 (753)
                                                        +.+++++++++..+  +          .++.++..|.+||.++++.
T Consensus       243 ----------------------------------i~~~~ll~~L~~~~--L----------~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          243 ----------------------------------IFETKLISTLIYKF--L----------NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             ----------------------------------HHSSSHHHHHHHHT--S----------SSHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------------hccchHHHHHHHHh--c----------CChHHHHHHHHHHHHHHhc
Confidence                                              56778888774222  1          1477999999999999998


Q ss_pred             cCccccCCChhhHHHHHHHHHHHHHHhcCCchhhHHHhhhCCCh-hhHH-HHHHHHHHHHhhcChhhHHHhhhcc-Cchh
Q 004445          346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEML-DGCRALLSIATVTTPFVFDRLLKSI-RPFG  422 (753)
Q Consensus       346 ~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~-e~cr~l~rL~~~~~~~~l~~~~~~~-~~~~  422 (753)
                      +.+    +....-.+.+..+|..+..+++....+..++..|..+ +++. .+||.+..+..+|.     .++... ....
T Consensus       277 ~~~----~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~~~~  347 (1073)
T 3gjx_A          277 SVS----QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLNLRE  347 (1073)
T ss_dssp             CSG----GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGGGHH
T ss_pred             ccc----chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCccchH
Confidence            532    1222334566677777777886555567777666443 4554 58888877777762     122111 1111


Q ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHhhcccc----ccCCCC---------CCChHHhhhHHHHHH
Q 004445          423 TLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNV---------VLPLEVRNAAASLFA  489 (753)
Q Consensus       423 ~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~s~~----~~~~~~---------~~p~~l~~~~~~I~~  489 (753)
                      .+...-++   ++..    +..+   -.|.+.+++++|..|++.+-    +.....         .+|.....| ..|+.
T Consensus       348 ~l~~~l~~---ll~~----s~~~---d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~  416 (1073)
T 3gjx_A          348 ALMEALHY---MLLV----SEVE---ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLS  416 (1073)
T ss_dssp             HHHHHHHH---HHHH----TTCS---CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHH
T ss_pred             HHHHHHHH---HHHH----hCCC---cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHH
Confidence            22111111   1111    1111   35899999999999988641    110000         122211112 23333


Q ss_pred             HH---HHhhcccccccccCCCCccchh-----h-hcHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHH
Q 004445          490 LI---VESELKVASASAMDDNGEFNYL-----Q-ASISAMDERLSSYALIARAAIDATVPLLTRLFSE  548 (753)
Q Consensus       490 ~Y---i~srL~~~~~~~~~d~d~de~~-----~-~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~ll~~  548 (753)
                      ..   +-+|+..|+.....|+|+.|-.     + ++...|+-.=+++..+....++.+...+.+.+.+
T Consensus       417 ~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~  484 (1073)
T 3gjx_A          417 KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQN  484 (1073)
T ss_dssp             HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            22   4589998875432222222211     1 1223343333444666777788888877766654

PyMOL of 3gjx

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		753
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.27
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.73
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.43

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=5e-09  Score=124.16  Aligned_cols=146  Identities=10%  Similarity=0.138  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHhccCCch-hHHHHHHHHHHHHHhhcccc------CCHHHHH
Q 004445           33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF------LTADEKK  105 (753)
Q Consensus        33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~s~~~~~~c~~ILe~S~~~-y~~f~A~~~L~~~i~~~W~~------l~~~~r~  105 (753)
                      +++-++..+-..|..|++||+.|.++.++|+.+..+..|+.+.+.+ .++..|+-.|++.|.+.|..      +|+++|.
T Consensus         5 ~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~   84 (959)
T d1wa5c_           5 ETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE   84 (959)
T ss_dssp             HHHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence            4455555554455459999999999999999999999999877765 69999999999999999964      9999999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHHcccCCchhHHHHHHHHHHHHhhhC
Q 004445          106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (753)
Q Consensus       106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~i~ei~~~l~~~~s~~~~~~gl~iL~~lv~Efs  185 (753)
                      .||+.+++.+.+    .++-++++++.+++.|.+..|++    +|+++++.+.+.+++ +++.....++.+|..++.+|.
T Consensus        85 ~Ik~~ll~~l~~----~~~~ir~~l~~~i~~I~~~d~p~----~Wp~ll~~l~~~l~s-~~~~~~~~~L~~l~~i~k~~~  155 (959)
T d1wa5c_          85 LIKKEIVPLMIS----LPNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWR  155 (959)
T ss_dssp             HHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCcc----ccHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            999999998864    34679999999999999999987    499999999999985 677888899999999999986


Q ss_pred             CC
Q 004445          186 PS  187 (753)
Q Consensus       186 ~~  187 (753)
                      ..
T Consensus       156 ~~  157 (959)
T d1wa5c_         156 PL  157 (959)
T ss_dssp             TS
T ss_pred             hh
Confidence            53

PyMOL of d1wa5c_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure