Citrus Sinensis ID: 004450

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750---
MEFEPLDIENGVIEFDEMRNSNGEDDSERPSDYYDHVLPDNSRNFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSGCQQHHSCSVDQDKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLKG
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHccEEEEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHcccccccccccccccccccHHHHHHcccccccHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHccccccccccccccHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccEEEEEEEEEcccEEEEEEcccEEcccccHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccc
cccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEcEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEHHEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccc
mefepldiengviefdemrnsngeddserpsdyydhvlpdnsrnfetlngdpnlepfegmefdseQAARIFYNSYARRIGFSTRVSVYQrsrrdgsiicRQIVcsregfrrgssenrskRQRTITRVGckaqmtvkkqgsgkWAVSKLIKEhnhelvppdkvhclrshrhvsgparSLIDTlqaagmgpsGVMSVLIKEsggvnnvgftKVDCqnymsssrqrtlgsgGQVVIDNLkqmqaedpsffcafqgdfenttgnifwadansrmnysyfgdtvtfdttyrmnryripfapftglnhhgqpvLFGCALLLNESEASFIWLFEAWLAAmsgrspnsittdQDRIIRAAVAqvfpgtrhrfckWNVFREAQERLSDvyqshphfeaEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKevkadydtvntepvlktpspmEKQVANLYTRKIFMKFQEELVETlaypativndtgSEIIYRVAKFGEEQKAHFVRYNIFekkascscqlfefsgiICRHILAVFRVtniltlpshyILKRWTRNAKSGVLLNGHVLGLassrqessaaRYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKkygpgvtqnslfsgcqqhhscsvdqdKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLKG
mefepldiengviefdemrnsngeddserpSDYYDHVLPDNSRNFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSvyqrsrrdgsiicrqivcsregfrrgssenrskrqrtitrvgckaqmtvkkqgsgkWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEkevkadydtvntepvlktpspmeKQVANLYTRKIFMKFQEELVETLAypativndtGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLassrqessaarYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSGCQQHHSCSVDQDKKIQELTVELENASQRCEAYRTKLLAVLKDmeeektkmlvkvenvrldlkg
MEFEPLDIENGVIEFDEMRNSNGEDDSERPSDYYDHVLPDNSRNFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYVEEGAESAHIYNMAMDVLREaakkvaaakkYGPGVTQNSLFSGCQQHHSCSVDQDKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLKG
*****************************************************************QAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSRE*******************VGCKAQMTV****SGKWAVSKLIKEHNHELVPPDKVHCLRSHRHV***ARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYM***********GQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGR**NSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIAS***************************QVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLA*******AARYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSGCQQHHSCSV*****IQELTVELENASQRCEAYRTKLLAVLKD*********************
*****************************************************LEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSR*******************RVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLN***************ARYDNLCREVIKYVEEGAESAHIYNMAMDVLRE**************************************************************************************
MEFEPLDIENGVIEFDEMRN*********PSDYYDHVLPDNSRNFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREG*****************RVGCKAQ***********AVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLAS********RYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSG***********DKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLKG
***************************************************PNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSRE*******************VGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSG***************ESSAARYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKY*********************DQDKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLK*
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MEFEPLDIENGVIEFDEMRNSNGEDDSERPSDYYDHVLPDNSRNFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYVEEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSGCQQHHSCxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLAVxxxxxxxxxxxxxxxxxxxxxLKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query753 2.2.26 [Sep-21-2011]
Q9SZL8788 Protein FAR1-RELATED SEQU yes no 0.929 0.888 0.582 0.0
Q9ZVC9 851 Protein FAR1-RELATED SEQU no no 0.826 0.730 0.480 1e-176
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.682 0.943 0.538 1e-168
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.818 0.744 0.369 1e-127
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.755 0.744 0.386 1e-122
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.758 0.724 0.372 1e-117
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.792 0.711 0.338 1e-110
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.796 0.819 0.333 1e-106
Q3EBQ3 807 Protein FAR1-RELATED SEQU no no 0.755 0.705 0.318 7e-97
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.799 0.856 0.317 1e-89
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function desciption
 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/716 (58%), Positives = 554/716 (77%), Gaps = 16/716 (2%)

Query: 53  NLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFR-- 110
           +LEP++G+EF+SE+AA+ FYNSYARRIGFSTRVS  +RSRRDG+II RQ VC++EGFR  
Sbjct: 70  DLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNM 129

Query: 111 --RGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSH 168
             + + +   KR RTITRVGCKA ++VK Q SGKW VS  +K+HNHELVPPD+VHCLRSH
Sbjct: 130 NEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSH 189

Query: 169 RHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSG 228
           R +SGPA++LIDTLQAAGMGP  +MS LIKE GG++ VGFT+VDC+NYM ++RQ+++   
Sbjct: 190 RQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIEGE 249

Query: 229 GQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMN 288
            Q+++D L+QM A++P+FF + QG  + + GN+FWAD  + M++++FGDTVTFDTTYR N
Sbjct: 250 IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSN 309

Query: 289 RYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRI 348
           RYR+PFAPFTG+NHHGQP+LFGCA ++NE+EASF+WLF  WLAAMS   P SITTD D +
Sbjct: 310 RYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAV 369

Query: 349 IRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCW 408
           IRAA+  VFPG RHRFCKW++ ++ QE+LS V+  HP FE++F +C+N+TE+V++FE CW
Sbjct: 370 IRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCW 429

Query: 409 ESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTN 468
            SL+ +Y L  +EWLQ++Y+ R+QWVPVYLRDTFF +MS+T  SD+INSYFDGYINASTN
Sbjct: 430 FSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTN 489

Query: 469 IQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELV 528
           +    K YEKA+ SR EKEVKADYDT+N+ PVLKTPSPMEKQ + LYTRK+FM+FQEELV
Sbjct: 490 LSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELV 549

Query: 529 ETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHIL 588
            TL + A+  +D G  + Y+VAK+GE  KAHFV++N+ E +A+CSCQ+FEFSGIICRHIL
Sbjct: 550 GTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHIL 609

Query: 589 AVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYV 648
           AVFRVTN+LTLP +YILKRWTRNAKS V+ + + L   ++  ES   RY+ L  +   +V
Sbjct: 610 AVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFV 669

Query: 649 EEGAESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQ-------NSLFSGCQQHHSCSV-- 699
           +E  +S +  ++A+  L+EAAK V+ A       T        +S+  G  Q    +   
Sbjct: 670 QEAGKSLYTCDVAVVALQEAAKTVSLAMNKEVRRTMANRHFKASSVTGGKHQQEVLAQPE 729

Query: 700 ---DQDKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLK 752
              + DKKI +L  ELE A+++CEAYRT LL+VLK+ME++K ++ +KV+N+++ LK
Sbjct: 730 PEDEMDKKINQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVSIKVQNIKISLK 785
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query753
359491925759 PREDICTED: protein FAR1-RELATED SEQUENCE 0.996 0.988 0.792 0.0
359476992773 PREDICTED: protein FAR1-RELATED SEQUENCE 0.994 0.968 0.632 0.0
356540888790 PREDICTED: protein FAR1-RELATED SEQUENCE 0.996 0.949 0.597 0.0
449453644790 PREDICTED: protein FAR1-RELATED SEQUENCE 0.925 0.882 0.603 0.0
147768753737 hypothetical protein VITISV_018182 [Viti 0.899 0.918 0.653 0.0
356553419777 PREDICTED: protein FAR1-RELATED SEQUENCE 0.929 0.900 0.601 0.0
225428354783 PREDICTED: protein FAR1-RELATED SEQUENCE 0.926 0.891 0.601 0.0
224104791751 predicted protein [Populus trichocarpa] 0.911 0.913 0.603 0.0
356498174776 PREDICTED: protein FAR1-RELATED SEQUENCE 0.929 0.902 0.595 0.0
357495685786 FAR1-related protein [Medicago truncatul 0.929 0.890 0.588 0.0
>gi|359491925|ref|XP_002273512.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1242 bits (3214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/762 (79%), Positives = 663/762 (87%), Gaps = 12/762 (1%)

Query: 1   MEFEPLDIENGVIEFDEMRNSNGED---DSERPSDY--YDHVLPDNS----RNFETLNGD 51
           M+FEPL+IEN V+EF     S  ED   D E   +Y  Y+  + +NS    R+   LNGD
Sbjct: 1   MDFEPLNIENEVMEF--AMGSGEEDNGLDLEHNDEYEGYNGEMMENSSAAGRDSLALNGD 58

Query: 52  PNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRR 111
           PNLEP EGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRR
Sbjct: 59  PNLEPSEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRR 118

Query: 112 GSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHV 171
              ENRSKRQRT+TRVGCKAQMTVKKQ SGKWAV+KL+KEHNH+LVPPDKVHCLRSHRHV
Sbjct: 119 EGGENRSKRQRTVTRVGCKAQMTVKKQNSGKWAVTKLVKEHNHDLVPPDKVHCLRSHRHV 178

Query: 172 SGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSGGQV 231
           SGPARSLIDTLQAAGMGPSGVMSVLIKESGG+NNVGFTKVDCQNYMSSSRQRTLGSGGQ 
Sbjct: 179 SGPARSLIDTLQAAGMGPSGVMSVLIKESGGINNVGFTKVDCQNYMSSSRQRTLGSGGQH 238

Query: 232 VIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMNRYR 291
           + D LK+MQ EDP FFCA QGD EN TGNIFWADANSR+NY YFGDTVTFDT YR NRYR
Sbjct: 239 IFDYLKRMQGEDPGFFCAVQGDSENPTGNIFWADANSRVNYQYFGDTVTFDTAYRTNRYR 298

Query: 292 IPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRIIRA 351
           +PFAPFTG NHHGQPVLFGCALLLNESE+SF+WLF+ WLAAMS   P SITTDQDRIIRA
Sbjct: 299 VPFAPFTGWNHHGQPVLFGCALLLNESESSFVWLFQTWLAAMSDHHPLSITTDQDRIIRA 358

Query: 352 AVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESL 411
           AVAQVFPGTRHRFCKWNVFREAQE+L  V QSH  FEAEFQRCIN+TET+DEFES WESL
Sbjct: 359 AVAQVFPGTRHRFCKWNVFREAQEKLFHVNQSHLTFEAEFQRCINLTETIDEFESSWESL 418

Query: 412 IRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQA 471
           + +YNL+ NEWLQSMYN RQQWVPVYLRDTFFGEMS+TQ +D+INS+FDGYINAST+IQ 
Sbjct: 419 LEKYNLLDNEWLQSMYNARQQWVPVYLRDTFFGEMSITQGTDSINSFFDGYINASTSIQV 478

Query: 472 LIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELVETL 531
           L+KQYEKA ASR+EKEVKADYDT+NT PVLKTPSPMEKQ ANLYTRKIF +FQEELVETL
Sbjct: 479 LLKQYEKATASRYEKEVKADYDTINTAPVLKTPSPMEKQAANLYTRKIFTQFQEELVETL 538

Query: 532 AYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHILAVF 591
           A PAT+++D GSE +YRVAKFGE+ KAHF+++N+FE+KASCSCQ+FEFSGIICRHILAVF
Sbjct: 539 ANPATVIDDGGSEALYRVAKFGEDHKAHFIKFNVFERKASCSCQMFEFSGIICRHILAVF 598

Query: 592 RVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYVEEG 651
           RVTN+LTLPSHYILKRWTRNAKSGV+L+ H LGL  S QES  ARY+NL RE IKYVEEG
Sbjct: 599 RVTNVLTLPSHYILKRWTRNAKSGVILDEHTLGLPGSSQESLTARYENLRREAIKYVEEG 658

Query: 652 AESAHIYNMAMDVLREAAKKVAAAKKYGPGVTQNSLFSGCQQHHSCSVDQDKKIQELTVE 711
           A S HIYN+AMD L EAAKKV AAKK G GVT ++    CQ   S SV+QDK+I+ELT E
Sbjct: 659 AASTHIYNVAMDALHEAAKKVYAAKKQGAGVTPSTSVKECQL-QSSSVEQDKRIEELTAE 717

Query: 712 LENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLKG 753
           LENASQRCEAYR  LLAVLKDMEEEK K+ VKV+N RL+LKG
Sbjct: 718 LENASQRCEAYRASLLAVLKDMEEEKLKIAVKVQNTRLNLKG 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476992|ref|XP_002263941.2| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540888|ref|XP_003538916.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] Back     alignment and taxonomy information
>gi|449453644|ref|XP_004144566.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis sativus] gi|449506920|ref|XP_004162884.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147768753|emb|CAN71534.1| hypothetical protein VITISV_018182 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356553419|ref|XP_003545054.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] Back     alignment and taxonomy information
>gi|225428354|ref|XP_002283202.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104791|ref|XP_002313567.1| predicted protein [Populus trichocarpa] gi|222849975|gb|EEE87522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498174|ref|XP_003517928.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] Back     alignment and taxonomy information
>gi|357495685|ref|XP_003618131.1| FAR1-related protein [Medicago truncatula] gi|355519466|gb|AET01090.1| FAR1-related protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query753
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.929 0.888 0.575 9.3e-233
TAIR|locus:2059304 851 FRS3 "FAR1-related sequence 3" 0.722 0.639 0.508 1e-148
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.683 0.944 0.522 3.4e-148
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.626 0.617 0.4 4.1e-119
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.811 0.738 0.373 7.7e-119
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.633 0.605 0.375 6.9e-115
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.786 0.808 0.333 1.4e-101
TAIR|locus:2062606 807 FRS2 "FAR1-related sequence 2" 0.573 0.535 0.340 6.1e-95
TAIR|locus:2090394839 FHY3 "far-red elongated hypoco 0.779 0.699 0.331 8.7e-95
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.786 0.842 0.319 5.4e-86
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2245 (795.3 bits), Expect = 9.3e-233, P = 9.3e-233
 Identities = 412/716 (57%), Positives = 548/716 (76%)

Query:    53 NLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFR-- 110
             +LEP++G+EF+SE+AA+ FYNSYARRIGFSTRVS  +RSRRDG+II RQ VC++EGFR  
Sbjct:    70 DLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNM 129

Query:   111 --RGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSH 168
               + + +   KR RTITRVGCKA ++VK Q SGKW VS  +K+HNHELVPPD+VHCLRSH
Sbjct:   130 NEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSH 189

Query:   169 RHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSG 228
             R +SGPA++LIDTLQAAGMGP  +MS LIKE GG++ VGFT+VDC+NYM ++RQ+++   
Sbjct:   190 RQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIEGE 249

Query:   229 GQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRMN 288
              Q+++D L+QM A++P+FF + QG  + + GN+FWAD  + M++++FGDTVTFDTTYR N
Sbjct:   250 IQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSN 309

Query:   289 RYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRI 348
             RYR+PFAPFTG+NHHGQP+LFGCA ++NE+EASF+WLF  WLAAMS   P SITTD D +
Sbjct:   310 RYRLPFAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAV 369

Query:   349 IRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCW 408
             IRAA+  VFPG RHRFCKW++ ++ QE+LS V+  HP FE++F +C+N+TE+V++FE CW
Sbjct:   370 IRAAIMHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCW 429

Query:   409 ESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTN 468
              SL+ +Y L  +EWLQ++Y+ R+QWVPVYLRDTFF +MS+T  SD+INSYFDGYINASTN
Sbjct:   430 FSLLDKYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTN 489

Query:   469 IQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFMKFQEELV 528
             +    K YEKA+ SR EKEVKADYDT+N+ PVLKTPSPMEKQ + LYTRK+FM+FQEELV
Sbjct:   490 LSQFFKLYEKALESRLEKEVKADYDTMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELV 549

Query:   529 ETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHIL 588
              TL + A+  +D G  + Y+VAK+GE  KAHFV++N+ E +A+CSCQ+FEFSGIICRHIL
Sbjct:   550 GTLTFMASKADDDGDLVTYQVAKYGEAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHIL 609

Query:   589 AVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYV 648
             AVFRVTN+LTLP +YILKRWTRNAKS V+ + + L   ++  ES   RY+ L  +   +V
Sbjct:   610 AVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFV 669

Query:   649 EEGAESAHIYNMAMDVLREXXXXXXXXXXYGPGVTQ-------NSLFSGCQQHHSCSV-- 699
             +E  +S +  ++A+  L+E               T        +S+  G  Q    +   
Sbjct:   670 QEAGKSLYTCDVAVVALQEAAKTVSLAMNKEVRRTMANRHFKASSVTGGKHQQEVLAQPE 729

Query:   700 ---DQDKKIQELTVELENASQRCEAYRTKLLAVLKDMEEEKTKMLVKVENVRLDLK 752
                + DKKI +L  ELE A+++CEAYRT LL+VLK+ME++K ++ +KV+N+++ LK
Sbjct:   730 PEDEMDKKINQLRNELELANRKCEAYRTNLLSVLKEMEDQKLQVSIKVQNIKISLK 785
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZL8FRS5_ARATHNo assigned EC number0.58240.92960.8883yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002947001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (758 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query753
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 1e-158
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 1e-35
pfam1055188 pfam10551, MULE, MULE transposase domain 3e-24
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 1e-07
pfam0443438 pfam04434, SWIM, SWIM zinc finger 7e-07
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  479 bits (1235), Expect = e-158
 Identities = 248/687 (36%), Positives = 375/687 (54%), Gaps = 54/687 (7%)

Query: 4   EPLDIENGVIEFDEMRNSNGEDDSERPSDYYDHVLPDNSRNFETLNG-------DPNLEP 56
           EP  ++N      E++  NG+ +     D  + VL  +  +  +  G       D NLEP
Sbjct: 18  EPNGVDN---MLSEVKLHNGDMEIGNVVDVAEEVLSIDGGDMNSPTGELVEFKEDTNLEP 74

Query: 57  FEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRR--GSS 114
             GMEF+S   A  FY  YAR +GF+T +   +RS+     I  +  CSR G +R    S
Sbjct: 75  LSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKS 134

Query: 115 ENRSK-RQ-----------RTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKV 162
            NR + RQ           R+  +  CKA M VK++  GKW +   +KEHNHEL+P    
Sbjct: 135 FNRPRARQTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA--- 191

Query: 163 HCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQ 222
                               QA       + + + ++     NV   K D ++     R 
Sbjct: 192 --------------------QAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRN 231

Query: 223 RTLGSG-GQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTF 281
             L +G  ++++D   QMQ  + +FF A     +    N+FW DA SR +Y  F D V+F
Sbjct: 232 LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSF 291

Query: 282 DTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSI 341
           DTTY  N+Y++P A F G+N H Q +L GCAL+ +ES A++ WL + WL AM G++P  I
Sbjct: 292 DTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVI 351

Query: 342 TTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETV 401
            TDQD+ +++ +++VFP   H F  W++  +  E L  V + H +F A+F++CI  + T 
Sbjct: 352 ITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTE 411

Query: 402 DEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQASDNINSYFDG 461
           +EF   W  ++ R+ L  +EW+QS+Y  R+QWVP Y+RD F   MS  Q S++IN++FD 
Sbjct: 412 EEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDK 471

Query: 462 YINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPMEKQVANLYTRKIFM 521
           Y++  T +Q  +KQYE  +  R+E+E KAD DT N +P LK+PSP+EK V+ +YT  +F 
Sbjct: 472 YVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFK 531

Query: 522 KFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSG 581
           KFQ E++  +A    + +   + I +RV  F + Q    V +N  + + SC C+LFE+ G
Sbjct: 532 KFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQD-FTVTWNQTKLEVSCICRLFEYKG 590

Query: 582 IICRHILAVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLC 641
            +CRH L V ++  +  +PS YILKRWT++AKS      H+LG  S + +S   RY++LC
Sbjct: 591 YLCRHALVVLQMCQLSAIPSQYILKRWTKDAKS-----RHLLGEESEQVQSRVQRYNDLC 645

Query: 642 REVIKYVEEGAESAHIYNMAMDVLREA 668
           +  +K  EE + S   YN+A   L EA
Sbjct: 646 QRALKLSEEASLSQESYNIAFRALEEA 672

Length = 846
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 753
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.86
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.83
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.65
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 99.21
COG3328379 Transposase and inactivated derivatives [DNA repli 98.96
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.83
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.78
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 98.22
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 96.78
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 94.12
PF13610140 DDE_Tnp_IS240: DDE domain 92.72
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 92.66
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 89.06
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 87.68
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 84.65
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-141  Score=1224.58  Aligned_cols=612  Identities=37%  Similarity=0.710  Sum_probs=561.1

Q ss_pred             CccccCCCCCCCCCCCCccCCHHHHHHHHHHHhhhcCcEEEEeeeeeccCCCceeEEEEEecCCCcccCCCc--------
Q 004450           44 NFETLNGDPNLEPFEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSE--------  115 (753)
Q Consensus        44 ~~~~~~~~~~~~P~~Gm~F~S~eea~~fy~~YA~~~GF~vr~~~s~r~k~~g~~~~~~f~C~r~G~~~~~~~--------  115 (753)
                      ..+...++...+|.+||+|+|+|||++||+.||+++||+||+.+++|++.+|.+++++|+|+|+|+++....        
T Consensus        62 ~~~~~~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~  141 (846)
T PLN03097         62 ELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRAR  141 (846)
T ss_pred             ccccccCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCccccccccccccc
Confidence            334445567899999999999999999999999999999999999999999999999999999998752110        


Q ss_pred             ------ccccccCcccccCCceEEEEEEeCCCcEEEEEeeccccCCCCCCCCcccccccccCCcchhhHHHHHHhcCCCC
Q 004450          116 ------NRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGP  189 (753)
Q Consensus       116 ------~~~~r~r~s~r~gCpa~i~v~~~~~~~W~V~~~~~~HNH~l~~~~~~~~l~shr~is~~~k~~i~~l~~~gi~~  189 (753)
                            ...+++|+.+||||||+|+|++..+|+|+|+.|+.+|||+|.|+..+.                       +.+
T Consensus       142 ~~k~~~~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~-----------------------~~~  198 (846)
T PLN03097        142 QTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVS-----------------------EQT  198 (846)
T ss_pred             ccccCcccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccc-----------------------hhh
Confidence                  011235667999999999999977899999999999999999874321                       123


Q ss_pred             cchhhhHhhhcCCcccccccccccchhhhhhhhhcc-CcChHHHHHHHHHhhhcCCccEEEEecCCCCCeeEEEecCcch
Q 004450          190 SGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTL-GSGGQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANS  268 (753)
Q Consensus       190 ~~I~~~l~~~~g~~~~~~~t~~Di~N~~~~~r~~~~-~gd~~~ll~~l~~~~~~np~f~y~~~~d~~~~~~~ifw~~~~~  268 (753)
                      +.++..+....++..+++++..|..|...+.|+..+ .||+++||+||+++|.+||+|||++++|++|++++|||+|++|
T Consensus       199 r~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~s  278 (846)
T PLN03097        199 RKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKS  278 (846)
T ss_pred             hhhHHHHHhhhhccccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHH
Confidence            445555556666677888888888888877776555 4999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcEEEecccccccccCCcccceEEeecCCceEEEEEEeecccchhHHHHHHHHHHHHhCCCCCceecchhhHH
Q 004450          269 RMNYSYFGDTVTFDTTYRMNRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNSITTDQDRI  348 (753)
Q Consensus       269 ~~~~~~f~dvv~~D~Ty~tn~y~~pl~~~~gvn~~~~~~~~g~al~~~Et~es~~W~~~~~~~~m~~~~p~~iitD~~~~  348 (753)
                      +.+|.+|||||+|||||+||+|++||++|+|||||+|+++||||||.+|+.+||.|||++|+++|+|++|.+||||+|.+
T Consensus       279 r~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~a  358 (846)
T PLN03097        279 RHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKA  358 (846)
T ss_pred             HHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCccccCCCchHHHHHHhhhhhccCCccHHHHHHHhhcCCCCHHHHHHHHHHHHHhhccCcChHHHHHHH
Q 004450          349 IRAAVAQVFPGTRHRFCKWNVFREAQERLSDVYQSHPHFEAEFQRCINMTETVDEFESCWESLIRRYNLVGNEWLQSMYN  428 (753)
Q Consensus       349 l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~l~~~~~~~~~~~~~~~~~v~~~~~~eeFe~~w~~l~~~~~l~~~~wL~~l~~  428 (753)
                      |.+||++|||+|.||+|.|||++|+.++|++++..++.|..+|.+||+.+++++|||..|..|+++|+|++|+||+.||+
T Consensus       359 m~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~  438 (846)
T PLN03097        359 MKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYE  438 (846)
T ss_pred             HHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            99999999999999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             HhccchhhhccccccccccccCCccchhhhhhcccCcCCCHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCChHH
Q 004450          429 VRQQWVPVYLRDTFFGEMSMTQASDNINSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADYDTVNTEPVLKTPSPME  508 (753)
Q Consensus       429 ~r~~W~~~y~~~~f~~g~~tt~r~Es~n~~~k~~v~~~~~l~~f~~~~~~~~~~~~~~e~~~d~~~~~~~p~l~~~~~~e  508 (753)
                      .|++|||+|+++.|++||.||+|+||+|++|++||++.++|..|+++|+++++.++++|+++|+++.++.|.+++++|||
T Consensus       439 ~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piE  518 (846)
T PLN03097        439 DRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLE  518 (846)
T ss_pred             hHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccHHHHHHHHHHHHHhcCcceEEEccCCceEEEEEeeecCccceEEEEEEecCceEEeeccccccCCceeeehh
Q 004450          509 KQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRVAKFGEEQKAHFVRYNIFEKKASCSCQLFEFSGIICRHIL  588 (753)
Q Consensus       509 ~qa~~~yT~~~f~~fq~e~~~s~~~~~~~~~~~~~~~~y~V~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~~GipC~Hil  588 (753)
                      +||+++|||+||++||+|+..+..|.+....++|...+|.|..... .+.|.|.+|...+.++|+|++||+.||||+|||
T Consensus       519 kQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaL  597 (846)
T PLN03097        519 KSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKGYLCRHAL  597 (846)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeecCccchhhHH
Confidence            9999999999999999999999999998888889999999987654 478999999999999999999999999999999


Q ss_pred             HHHhhhcccccCCcchhccccccccCCccccCcccCCCCcccCChHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 004450          589 AVFRVTNILTLPSHYILKRWTRNAKSGVLLNGHVLGLASSRQESSAARYDNLCREVIKYVEEGAESAHIYNMAMDVLREA  668 (753)
Q Consensus       589 ~Vl~~~~v~~iP~~yil~RWtk~ak~~~~~~~~~~~~~~~~~~s~~~Ry~~L~~~~~~~~~~~~~s~e~~~~a~~~l~e~  668 (753)
                      +||.++||.+||++|||+||||+||...+.+...     ....+.+.||+.||++++++|++|+.|.|.|..||++|+|+
T Consensus       598 kVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~-----~~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~  672 (846)
T PLN03097        598 VVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEES-----EQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEA  672 (846)
T ss_pred             HHHhhcCcccCchhhhhhhchhhhhhcccCcccc-----ccccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876554322     11235578999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccc
Q 004450          669 AKKVAAAKKYGPGVTQ  684 (753)
Q Consensus       669 ~~~~~~~~~~~~~~~~  684 (753)
                      .++++.+++.+...+.
T Consensus       673 ~~~~~~~~n~~~~~~~  688 (846)
T PLN03097        673 FGNCISMNNSNKSLVE  688 (846)
T ss_pred             HHHHHHhhccCCCccc
Confidence            9999988887666653

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query753
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 105/745 (14%), Positives = 217/745 (29%), Gaps = 240/745 (32%)

Query: 6   LDIENGVIEFDEMRNSNG------EDDSERPSDYYDHVLPDNSRN------FETLNGDPN 53
           +D E G     E +          ED      D  D  + D  ++       + +    +
Sbjct: 7   MDFETG-----EHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKD 59

Query: 54  LEP-----FEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREG 108
                   F  +    E+  + F      RI +   +S  +  +R  S++ R  +  R+ 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD- 117

Query: 109 FRRGSSENRSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVPPDKVHCLRSH 168
             R  ++N+   +  ++R+    ++              L++              LR  
Sbjct: 118 --RLYNDNQVFAKYNVSRLQPYLKLR-----------QALLE--------------LRPA 150

Query: 169 RHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGVNNVGFTKVDCQNYMSSSRQRTLGSG 228
           ++V          +   G+  SG  + +  +             C +Y            
Sbjct: 151 KNV---------LID--GVLGSG-KTWVALDV------------CLSY------------ 174

Query: 229 GQVVIDNLKQMQAEDPSFFCAFQGDFENTTGNIFWADANSRMNYSYFGDTVTFDTTYRM- 287
                                 Q   +     IFW +           +  + +T   M 
Sbjct: 175 --------------------KVQCKMDF---KIFWLN---------LKNCNSPETVLEML 202

Query: 288 -NRYRIPFAPFTGLNHHGQPVLFGCALLLNESEASFIWLFEAWLAAMSGRSPNS--ITTD 344
                     +T  + H   +     L ++  +A    L ++          N   +  +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSK------PYENCLLVLLN 252

Query: 345 -QD-RIIRAAVAQVFPGTRHRF---CKWNV---FREAQERLSDVYQSHPHFEAEFQRCIN 396
            Q+ +   A            F   CK  +   F++  + LS    +H   +       +
Sbjct: 253 VQNAKAWNA------------FNLSCKILLTTRFKQVTDFLSAATTTHISLD-------H 293

Query: 397 MTETVDEFESCWESLIRRYNLVGNEWLQSMYNVRQQWVPVYLRDTFFGEMSMTQAS--DN 454
            + T+   E   +SL+ +       +L    + R Q +P  +  T    +S+   S  D 
Sbjct: 294 HSMTLTPDEV--KSLLLK-------YL----DCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 455 INSYFDGYINASTNIQALIKQYEKAIASRHEKEVKADY-------DTVN-TEPVL----- 501
           + + +D + +   N   L    E ++      E +  +        + +    +L     
Sbjct: 341 LAT-WDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 502 -KTPSPMEKQVANLYTRKIFMKFQEELVETLAYPATIVNDTGSEIIYRV--AKFGEEQKA 558
               S +   V  L+   +  K  +E   T++ P+          IY     K   E   
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKE--STISIPS----------IYLELKVKLENEYAL 445

Query: 559 H--FV-RYNIFEKKASCSCQLFEFSGIICRHI---LAVFRVTNILTL-PSHYILKRWTRN 611
           H   V  YNI +   S              HI   L        +TL    ++  R+   
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 612 A--KSGVLLNGHVLGLASSRQE---------SSAARYDNLCREVIKYVEEGAESAHIYNM 660
                    N     + ++ Q+          +  +Y+ L   ++ ++ +  E+      
Sbjct: 506 KIRHDSTAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 661 AMDVLR------------EAAKKVA 673
             D+LR            EA K+V 
Sbjct: 565 -TDLLRIALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query753
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 92.48
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 90.16
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 89.02
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=92.48  E-value=0.62  Score=37.40  Aligned_cols=29  Identities=21%  Similarity=0.550  Sum_probs=25.8

Q ss_pred             CCceEEEEEEeC-CCcEEEEEeeccccCCC
Q 004450          128 GCKAQMTVKKQG-SGKWAVSKLIKEHNHEL  156 (753)
Q Consensus       128 gCpa~i~v~~~~-~~~W~V~~~~~~HNH~l  156 (753)
                      ||||+=.|.+.. +....++.+..+|||++
T Consensus        44 gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           44 GCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             TCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            999999999875 67888889999999985
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query753
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 93.24
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.24  E-value=0.085  Score=39.79  Aligned_cols=29  Identities=31%  Similarity=0.552  Sum_probs=25.4

Q ss_pred             CCceEEEEEEeC-CCcEEEEEeeccccCCC
Q 004450          128 GCKAQMTVKKQG-SGKWAVSKLIKEHNHEL  156 (753)
Q Consensus       128 gCpa~i~v~~~~-~~~W~V~~~~~~HNH~l  156 (753)
                      ||+|+=.|.+.. ++.-.++.+..+|||++
T Consensus        40 ~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          40 GCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            899999999876 67778888999999974