Citrus Sinensis ID: 004461

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750--

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHcccccEEEEccccccHHHHHcccccccccccHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccc

cccccEEEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHccccccccHccccccccEEEEEEEccccccHHHHHHHHHHccccccccEEEEEEEEEEcccccccEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccHHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccccccccHHHccccccccHHEEcccccccEEEEEEEcccccccccccccccccccccccccc

masvghacpapmkptsngvfqgdspldfaLPLAILQICLVILLTRGLAfilrplrqprviaeitggillgpsalgrserflqavfppksqtVLDTLANLGLIFFMFLVGleldpkslrQTGKKALGIAIAGISLpfalgigssfLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALsgsgqsslvPVWVFLSGCVFVICltlfvpptfkwmarqchegpfANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKParrarvadykhrtverknsKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRnglpfwnrgrqsnpnHIVVAFEAFQQLsrvsvrpmtaissmsDMHEDICTTAESKRAAIIILpfhkhqrldgslettrsdfRWVNqrvlkhapcsvgilidrglggttqvsasNVSYTITVLFFGGRDDREALACGarmaehpgisFIVIRFLLAADaigntvsvdmagnasmdEEVLSEFKlktsrngsvryeeRLVRNTAETIAVIREVSRCNLllvgrmpdGELALALSTrsdclelgpvgslltsleFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARrarvadykhrtverknskaQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPfhkhqrldgsLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEfklktsrngsvryeerlvrntaetiaVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASeleedspdkgsdlsn

MASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRmamsaaavndvaawillalavalsgsgqsslvPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNLASELEEDSPDKGSDLSN

**********************DSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPMTAI******HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAG********************SVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSDRVFMNL*****************

****GHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP************************ILACFHSARNIPSTINLLEAL*******GLCVYALHLMELSERSSA************************HIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHK*************DFRWVNQRVLKHAPCSVGILIDRGL************YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA********************EVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPD***********DCLELGPVGSLLTSLEFSTASVLIIQ***************************

****GHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFKWMARQCHEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKA************QSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAI***VSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQYSD***********************

ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		752	2.2.26 [Sep-21-2011]
Q9FFR9		810	Cation/H(+) antiporter 18	yes	no	0.989	0.918	0.661	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.966	0.886	0.607	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.980	0.921	0.585	0.0
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.956	0.886	0.534	0.0
Q9SIT5		821	Cation/H(+) antiporter 15	no	no	0.960	0.879	0.456	0.0
Q9M353		842	Cation/H(+) antiporter 20	no	no	0.948	0.846	0.474	1e-180
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.933	0.809	0.349	1e-115
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.933	0.843	0.323	1e-100
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.969	0.879	0.308	2e-98
O22920		831	Cation/H(+) symporter 13	no	no	0.940	0.850	0.301	2e-86

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function desciption

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/804 (66%), Positives = 626/804 (77%), Gaps = 60/804 (7%)

Query: 6   HACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITG 65
            ACPAPMK TSNGVFQGD+P+DFALPLAILQI +VI+LTR LA++LRPLRQPRVIAE+ G
Sbjct: 7   KACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVIG 66

Query: 66  GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKAL 125
           GI+LGPS LGRS+ FL AVFP KS TVL+TLANLGL+FF+FL GLE+D K+LR+TGKKAL
Sbjct: 67  GIMLGPSLLGRSKAFLDAVFPKKSLTVLETLANLGLLFFLFLAGLEIDTKALRRTGKKAL 126

Query: 126 GIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLL 185
           GIA+AGI+LPFALGIGSSF+L+ TISKGV+ST+FLVFMGVALSITAFPVLARILAELKLL
Sbjct: 127 GIALAGITLPFALGIGSSFVLKATISKGVNSTAFLVFMGVALSITAFPVLARILAELKLL 186

Query: 186 TADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPT 245
           T ++GR+AMSAAAVNDVAAWILLALA+ALSGS  S LV +WVFLSGC FVI  +  +PP 
Sbjct: 187 TTEIGRLAMSAAAVNDVAAWILLALAIALSGSNTSPLVSLWVFLSGCAFVIGASFIIPPI 246

Query: 246 FKWMARQCHEG--------------------------------------------PFANA 261
           F+W++R+CHEG                                            PFA A
Sbjct: 247 FRWISRRCHEGEPIEETYICATLAVVLVCGFITDAIGIHSMFGAFVVGVLIPKEGPFAGA 306

Query: 262 LVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS 321
           LVEKVEDLVSG+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+GT  VSL+
Sbjct: 307 LVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILGTLGVSLA 366

Query: 322 FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 381
           FK+P+REA+ LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+TTP+VMA
Sbjct: 367 FKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFITTPVVMA 426

Query: 382 VYKPARRARV-ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 440
           VYKPARRA+   +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI+K EGLC
Sbjct: 427 VYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGIEKGEGLC 486

Query: 441 VYALHLMELSERSSAILMVHKARRNGLPFWNR-GRQSNPNHIVVAFEAFQQLSRVSVRPM 499
           VYALHL ELSERSSAILMVHK R+NG+PFWNR G  ++ + +VVAF+AFQQLSRV+VRPM
Sbjct: 487 VYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLSRVNVRPM 546

Query: 500 TAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 559
           TAISSMSD+HEDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RVL  APCS
Sbjct: 547 TAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRVLLQAPCS 606

Query: 560 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 619
           VGI +DRGLGG++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   V RF+++
Sbjct: 607 VGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLTVFRFVVS 666

Query: 620 ADAIGN---------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI- 669
            + +G                  N   DEE++SE +  +S + SV++ E+ + N A  + 
Sbjct: 667 PERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVR 726

Query: 670 AVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 728
           + I EV R NL LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASVL+IQQY+
Sbjct: 727 SAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASVLVIQQYN 786

Query: 729 DR-VFMNLASELEE--DSPDKGSD 749
              +  +L +   E   S DK SD
Sbjct: 787 GTGIAPDLGAAETEVLTSTDKDSD 810

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function description

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		752
255537655		805	Na(+)/H(+) antiporter, putative [Ricinus	0.994	0.929	0.723	0.0
225426078		796	PREDICTED: cation/H(+) antiporter 18 [Vi	0.992	0.937	0.721	0.0
224053817		804	cation proton exchanger [Populus trichoc	0.980	0.916	0.699	0.0
356497291		806	PREDICTED: cation/H(+) antiporter 18-lik	0.993	0.926	0.659	0.0
357481511		800	Na+/H+ antiporter-like protein [Medicago	0.989	0.93	0.662	0.0
356540416		805	PREDICTED: cation/H(+) antiporter 18-lik	0.992	0.926	0.651	0.0
357481513		803	Cation proton exchanger [Medicago trunca	0.989	0.926	0.658	0.0
449513592		799	PREDICTED: cation/H(+) antiporter 18-lik	0.980	0.922	0.675	0.0
449457680		799	PREDICTED: cation/H(+) antiporter 18-lik	0.980	0.922	0.672	0.0
297801398		810	ATCHX18 [Arabidopsis lyrata subsp. lyrat	0.988	0.917	0.672	0.0

>gi\|255537655\|ref\|XP_002509894.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223549793\|gb\|EEF51281.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1153 bits (2982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/799 (72%), Positives = 655/799 (81%), Gaps = 51/799 (6%)

Query: 2   ASVGHACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPL-RQPRVI 60
           ASVGH CP+PMKP SNGVFQGDSPLDF+LPL ILQICLV++LTR LAF LR L RQPRVI
Sbjct: 5   ASVGHTCPSPMKPASNGVFQGDSPLDFSLPLVILQICLVLVLTRALAFPLRRLLRQPRVI 64

Query: 61  AEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 120
           AEI GGILLGPSALGRSE++L AVFPPKS  VLDTLAN+GL++F+FLVGLELD KSLR+T
Sbjct: 65  AEIIGGILLGPSALGRSEKYLHAVFPPKSLPVLDTLANIGLLYFLFLVGLELDLKSLRKT 124

Query: 121 GKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 180
           GKKAL IAIAGISLPF +GIGSSF+LR TISKGV+STSFL+FMGVALSITAFPVLARILA
Sbjct: 125 GKKALAIAIAGISLPFGMGIGSSFILRATISKGVNSTSFLLFMGVALSITAFPVLARILA 184

Query: 181 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTL 240
           ELKLLT DVGRMAMSAAAVNDVAAWILLALA+ALSGS  S +  +WV L G VFVIC TL
Sbjct: 185 ELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSNHSPITSLWVLLCGFVFVICSTL 244

Query: 241 FVPPTFKWMARQCHEG-------------------------------------------- 256
            +PP FK + R+CHEG                                            
Sbjct: 245 VLPPIFKLITRRCHEGEPVEETYVCATLAAVLVAGFITDAIGIHAMFGAFVIGVLVPKEG 304

Query: 257 PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 316
           PFA ALVEK+EDLVSG+FLPLYFVSSGLKT+IATI GLQSWGLLALV  TAC GKIVGTF
Sbjct: 305 PFARALVEKIEDLVSGLFLPLYFVSSGLKTDIATISGLQSWGLLALVTFTACFGKIVGTF 364

Query: 317 VVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTT 376
           +VSL+ KVPLREALA+G LMNTKGLVELIVLNIGKD+KVLNDQ FAIM+LMA+ TTF+TT
Sbjct: 365 LVSLACKVPLREALAMGFLMNTKGLVELIVLNIGKDKKVLNDQTFAIMVLMALFTTFITT 424

Query: 377 PLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKS 436
           PLVMAVYKPAR++RVADYKHRT+ERKNS  Q RILACFHSARNIPSTINLLEA RG+QK+
Sbjct: 425 PLVMAVYKPARKSRVADYKHRTIERKNSSMQLRILACFHSARNIPSTINLLEASRGVQKA 484

Query: 437 EGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSV 496
           EGLCVYA+HLMELSERSSAILMVHKAR+NGLP WN+G + + N+++VAFEAF+QLS+V V
Sbjct: 485 EGLCVYAMHLMELSERSSAILMVHKARKNGLPTWNKGSKPDSNNVIVAFEAFRQLSQVMV 544

Query: 497 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA 556
           R MTAISSMSD+HEDICTTAE KRAAIIILPFHKHQRLDGSLETTR DFRWVN+RVL+HA
Sbjct: 545 RSMTAISSMSDIHEDICTTAERKRAAIIILPFHKHQRLDGSLETTRIDFRWVNRRVLEHA 604

Query: 557 PCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRF 616
           PCSVGIL+DRGLGGT+ V AS+VSY ITVLFFGGRDDREALA GARMAEHPGIS  VIRF
Sbjct: 605 PCSVGILVDRGLGGTSHVPASDVSYLITVLFFGGRDDREALAYGARMAEHPGISLKVIRF 664

Query: 617 LLAADAIGNTVSVDMAGN-----ASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAV 671
           L+A DA G    V+M  +      S DE+ L EFK KT ++ SV+YEE+ +RNTA  + V
Sbjct: 665 LVAPDAQGEITQVNMESSINTKLGSWDEQFLLEFKQKTCKDSSVKYEEKAIRNTAGAMDV 724

Query: 672 IREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFS-TASVLIIQQYSDR 730
           I EV+ CNL LVGRMP+GE+A+AL+  ++C ELGPVGSLL +  FS TASVL+IQQY  +
Sbjct: 725 IHEVNHCNLFLVGRMPEGEIAIALNRWNECPELGPVGSLLATSNFSTTASVLVIQQYDSQ 784

Query: 731 VFMNLASELEEDSPDKGSD 749
           V ++LAS   +D   + S+
Sbjct: 785 VSLDLASHAGDDQVGRDSE 803

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225426078\|ref\|XP_002272080.1\| PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224053817\|ref\|XP_002297994.1\| cation proton exchanger [Populus trichocarpa] gi\|222845252\|gb\|EEE82799.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356497291\|ref\|XP_003517494.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481511\|ref\|XP_003611041.1\| Na+/H+ antiporter-like protein [Medicago truncatula] gi\|355512376\|gb\|AES93999.1\| Na+/H+ antiporter-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356540416\|ref\|XP_003538685.1\| PREDICTED: cation/H(+) antiporter 18-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481513\|ref\|XP_003611042.1\| Cation proton exchanger [Medicago truncatula] gi\|355512377\|gb\|AES94000.1\| Cation proton exchanger [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449513592\|ref\|XP_004164366.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449457680\|ref\|XP_004146576.1\| PREDICTED: cation/H(+) antiporter 18-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297801398\|ref\|XP_002868583.1\| ATCHX18 [Arabidopsis lyrata subsp. lyrata] gi\|297314419\|gb\|EFH44842.1\| ATCHX18 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		752
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.658	0.611	0.671	1.8e-262
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.534	0.490	0.640	1.5e-236
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.651	0.612	0.578	1.2e-221
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.627	0.581	0.517	4.2e-195
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.621	0.568	0.465	2.3e-172
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.416	0.371	0.545	3.3e-161
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.662	0.574	0.363	1.5e-104
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.652	0.592	0.332	4.7e-97
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.623	0.564	0.319	4.4e-90
TAIR\|locus:2172631		822	CHX3 "cation/H+ exchanger 3" [	0.642	0.587	0.312	6e-72

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1687 (598.9 bits), Expect = 1.8e-262, Sum P(2) = 1.8e-262
 Identities = 343/511 (67%), Positives = 410/511 (80%)

Query:   255 EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVG 314
             EGPFA ALVEKVEDLVSG+FLPLYFV+SGLKTN+ATIQG QSWGLL LV  TAC GKI+G
Sbjct:   300 EGPFAGALVEKVEDLVSGLFLPLYFVASGLKTNVATIQGAQSWGLLVLVTATACFGKILG 359

Query:   315 TFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFM 374
             T  VSL+FK+P+REA+ LG LMNTKGLVELIVLNIGKDRKVLNDQ FAIM+LMA+ TTF+
Sbjct:   360 TLGVSLAFKIPMREAITLGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMALFTTFI 419

Query:   375 TTPLVMAVYKPARRARV-ADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGI 433
             TTP+VMAVYKPARRA+   +YKHR VER+N+  Q RIL CFH A +IPS INLLEA RGI
Sbjct:   420 TTPVVMAVYKPARRAKKEGEYKHRAVERENTNTQLRILTCFHGAGSIPSMINLLEASRGI 479

Query:   434 QKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNR-GRQSNPNHIVVAFEAFQQLS 492
             +K EGLCVYALHL ELSERSSAILMVHK R+NG+PFWNR G  ++ + +VVAF+AFQQLS
Sbjct:   480 EKGEGLCVYALHLRELSERSSAILMVHKVRKNGMPFWNRRGVNADADQVVVAFQAFQQLS 539

Query:   493 RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRV 552
             RV+VRPMTAISSMSD+HEDICTTA  K+AAI+ILPFHKHQ+LDGSLETTR D+RWVN+RV
Sbjct:   540 RVNVRPMTAISSMSDIHEDICTTAVRKKAAIVILPFHKHQQLDGSLETTRGDYRWVNRRV 599

Query:   553 LKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFI 612
             L  APCSVGI +DRGLGG++QVSA +VSY++ VLFFGG DDREALA G RMAEHPGI   
Sbjct:   600 LLQAPCSVGIFVDRGLGGSSQVSAQDVSYSVVVLFFGGPDDREALAYGLRMAEHPGIVLT 659

Query:   613 VIRFLLAADAIGNTVSVDMAGNAS---------MDEEVLSEFKLKTSRNGSVRYEERLVR 663
             V RF+++ + +G  V+V+++ N +          DEE++SE +  +S + SV++ E+ + 
Sbjct:   660 VFRFVVSPERVGEIVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIE 719

Query:   664 NTAETI-AVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASV 721
             N A  + + I EV R NL LVGRMP GE+ALA+   S+C ELGPVGSLL S E ST ASV
Sbjct:   720 NAAVDVRSAIEEVRRSNLFLVGRMPGGEIALAIRENSECPELGPVGSLLISPESSTKASV 779

Query:   722 LIIQQYSDR-VFMNL-ASELEE-DSPDKGSD 749
             L+IQQY+   +  +L A+E E   S DK SD
Sbjct:   780 LVIQQYNGTGIAPDLGAAETEVLTSTDKDSD 810

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0005770 "late endosome" evidence=IDA

GO:0006885 "regulation of pH" evidence=IMP

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFR9	CHX18_ARATH	No assigned EC number	0.6616	0.9893	0.9185	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002503001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (796 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		752
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	6e-52
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-49
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	2e-26
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	1e-09
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	1e-06
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	2e-06
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	1e-05
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	7e-04

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  760 bits (1964), Expect = 0.0
 Identities = 381/783 (48%), Positives = 524/783 (66%), Gaps = 69/783 (8%)

Query: 8   CPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGI 67
           C APM  T+NG++QGD+PLDF+LPL ILQ+ LV++ TR L FIL+P RQPRVI+EI GG+
Sbjct: 19  CYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGV 78

Query: 68  LLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGI 127
           +LGPS LG+SE F   +FP +S  VL+T+ANLGL++F+FLVG+E+D   +R+TGKKAL I
Sbjct: 79  ILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAI 138

Query: 128 AIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 187
           AIAG++LPF +G+  SF+  + +S+ V   +F++F+GVALS+TAFPVLARILAE+KL+  
Sbjct: 139 AIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINT 197

Query: 188 DVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTFK 247
           ++GR+AMSAA VND+ AWILLALA+AL+ +  +SL  +WV LS   FV+     V P   
Sbjct: 198 ELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIW 257

Query: 248 WMARQCHEG-------------------------------------------PFANALVE 264
           W+ R+  EG                                           P    L+E
Sbjct: 258 WIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIE 317

Query: 265 KVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV 324
           K+ED VSG+ LPL+F  SGLKTN+  IQG  +WGLL LVI+ A  GKI+GT +++  + +
Sbjct: 318 KLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTM 377

Query: 325 PLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 384
           P RE + LG LMNTKGLVE+IVLN+G+D++VL+D+ FA+M+L+AV  T + TP+V  VY+
Sbjct: 378 PFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437

Query: 385 PARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL 444
           PAR  R+  YK RT++R    A+ R+L C H+ RN+P+ INLLEA    ++S  +C+Y L
Sbjct: 438 PAR--RLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP-ICIYVL 494

Query: 445 HLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQ-LSRVSVRPMTAIS 503
           HL+EL+ R+SA+L+VH  R++G P  NR  Q+  +HI+ AFE ++Q    VSV+P+TAIS
Sbjct: 495 HLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAIS 553

Query: 504 SMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 563
             S MHED+C  AE KR ++II+PFHK Q +DG +E T   FR VNQ VL +APCSVGIL
Sbjct: 554 PYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGIL 613

Query: 564 IDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAI 623
           +DRGL G T+++++ VS+ + VLFFGG DDREALA   RM+EHPGI+  V+RF+   DA 
Sbjct: 614 VDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAA 673

Query: 624 GN--------------TVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETI 669
                           TV  D      +DEE ++EF+ + + N S+ Y E++V N  ET+
Sbjct: 674 PTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETV 733

Query: 670 AVIREV-SRCNLLLVGRMPDGE---LALALSTRSDCLELGPVGSLLTSLEFS-TASVLII 724
           A IR + S  +L +VGR   G    L   L+  S+C ELG +G LL S +F+ T SVL++
Sbjct: 734 AAIRSMDSAHDLFIVGRGQ-GMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVV 792

Query: 725 QQY 727
           QQY
Sbjct: 793 QQY 795

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		752
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	99.97
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	99.97
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	99.96
PRK11175		305	universal stress protein UspE; Provisional	99.91
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.9
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.9
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.88
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.81
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.81
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.68
PRK15456		142	universal stress protein UspG; Provisional	99.61
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.61
PRK15005		144	universal stress protein F; Provisional	99.58
PRK15118		144	universal stress global response regulator UspA; P	99.55
PRK09982		142	universal stress protein UspD; Provisional	99.55
cd01987		124	USP_OKCHK USP domain is located between the N-term	99.47
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.44
PF00582		140	Usp: Universal stress protein family; InterPro: IP	99.43
PRK10116		142	universal stress protein UspC; Provisional	99.43
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.38
PRK11175		305	universal stress protein UspE; Provisional	99.33
cd00293		130	USP_Like Usp: Universal stress protein family. The	99.2
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.12
COG0589		154	UspA Universal stress protein UspA and related nuc	99.11
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.99
PRK15005		144	universal stress protein F; Provisional	98.94
PRK09982		142	universal stress protein UspD; Provisional	98.87
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.83
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	98.81
PRK15456		142	universal stress protein UspG; Provisional	98.79
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.78
PRK15118		144	universal stress global response regulator UspA; P	98.67
PRK10116		142	universal stress protein UspC; Provisional	98.66
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.65
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	98.65
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	98.6
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	98.43
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	98.42
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	98.4
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	98.37
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.36
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	98.33
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	98.32
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	98.06
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.02
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	97.98
COG0589		154	UspA Universal stress protein UspA and related nuc	97.95
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	97.94
PRK10490		895	sensor protein KdpD; Provisional	97.84
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.75
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.66
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.66
COG0385		319	Predicted Na+-dependent transporter [General funct	97.45
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	97.42
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.35
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	97.3
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	97.04
TIGR00841		286	bass bile acid transporter. Functionally character	96.96
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.88
TIGR00698		335	conserved hypothetical integral membrane protein.	96.79
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.75
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.67
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	96.52
PRK10490		895	sensor protein KdpD; Provisional	96.05
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.69
PRK03818		552	putative transporter; Validated	95.68
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.36
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	95.34
PRK03562		621	glutathione-regulated potassium-efflux system prot	95.27
PRK03659		601	glutathione-regulated potassium-efflux system prot	95.07
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	94.49
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.45
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	94.37
TIGR00930		953	2a30 K-Cl cotransporter.	94.35
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	94.1
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	93.9
PRK04972		558	putative transporter; Provisional	93.78
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	93.53
PRK10669		558	putative cation:proton antiport protein; Provision	93.43
PLN03159		832	cation/H(+) antiporter 15; Provisional	92.42
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	92.33
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.04
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.86
TIGR00698		335	conserved hypothetical integral membrane protein.	91.74
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	91.23
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	91.02
COG2985		544	Predicted permease [General function prediction on	90.87
COG2855		334	Predicted membrane protein [Function unknown]	90.57
TIGR03136		399	malonate_biotin Na+-transporting malonate decarbox	90.19
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	89.3
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	89.12
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	88.59
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	88.04
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	87.71
PF03977		360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	87.16
PRK04972		558	putative transporter; Provisional	86.69
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	86.5
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	85.29
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	85.29
PRK03818		552	putative transporter; Validated	84.03
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	83.46
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	83.17
PRK04288		232	antiholin-like protein LrgB; Provisional	81.85
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	80.45
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	80.26

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=7.8e-136  Score=1205.34  Aligned_cols=717  Identities=52%  Similarity=0.914  Sum_probs=645.9

Q ss_pred             CCCCCCcCCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccccCchhhhhhccCC
Q 004461            7 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFP   86 (752)
Q Consensus         7 ~c~~~~~~~~~~~~~~~~pl~~~~~~~l~~i~lil~~~~~~~~ll~rl~~P~iv~~IlaGiilGP~~lg~~~~~~~~lfp   86 (752)
                      +|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus        18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            59965578999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccChhhHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHH
Q 004461           87 PKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA  166 (752)
Q Consensus        87 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~  166 (752)
                      .++.+.+++++++|++|+||++|+|+|++.+|+++|+++.+|++++++|+++|+++++++.. ...........+++|++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a  176 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA  176 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999988887743 21112222457899999


Q ss_pred             HhhccHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004461          167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPTF  246 (752)
Q Consensus       167 ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~~  246 (752)
                      +|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......+|.++..+++++++.+++||++
T Consensus       177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~  256 (832)
T PLN03159        177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI  256 (832)
T ss_pred             HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876654443334566777778888889999999999


Q ss_pred             HHHHHhcCC-------------------------------------------CchHHHHHHHHHHHHHHhhHHHHHHHhh
Q 004461          247 KWMARQCHE-------------------------------------------GPFANALVEKVEDLVSGIFLPLYFVSSG  283 (752)
Q Consensus       247 ~~~~~~~~e-------------------------------------------g~~~~~l~~kl~~~~~~~~~piFFv~~G  283 (752)
                      .|+.++.++                                           +++++.+.+|++++++++|+|+||+++|
T Consensus       257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vG  336 (832)
T PLN03159        257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISG  336 (832)
T ss_pred             HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999998743                                           3567899999999999999999999999


Q ss_pred             ccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHhhhccCCCCHHHHHH
Q 004461          284 LKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAI  363 (752)
Q Consensus       284 l~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~l~~~~~~~~~i~~~~~~~  363 (752)
                      +++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++.+.|+++++.|++
T Consensus       337 l~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~  416 (832)
T PLN03159        337 LKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAV  416 (832)
T ss_pred             heeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhH
Confidence            99999888754456666777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchhhhhhhccccccccccCCCCCcceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEE
Q 004461          364 MILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYA  443 (752)
Q Consensus       364 lv~~~lv~t~i~~pl~~~l~~~~~~~~~~~~~~~~i~~~~~~~e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~  443 (752)
                      ++++++++|.+++|++.++|+|+||+.  .|++|++|+.++++|+|||+|+|++++++.++++++.++++ +++|.++|+
T Consensus       417 lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy~  493 (832)
T PLN03159        417 MVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIYV  493 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEEE
Confidence            999999999999999999999999998  99999999999999999999999999999999999999999 999999999


Q ss_pred             EEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHHHhhhc-cceEEEEeEEecCCCChHHHHHHHHHhcCcc
Q 004461          444 LHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAA  522 (752)
Q Consensus       444 Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~v~~~~~v~~~~~~~~~I~~~A~e~~ad  522 (752)
                      +|++|+++|+++.+++|+.+++..+..++ ...++++++++|+.|+++ ++++++++++++|+++||+|||+.|+|++++
T Consensus       494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~s  572 (832)
T PLN03159        494 LHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVS  572 (832)
T ss_pred             EEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCC
Confidence            99999999999999999865433321111 124579999999999976 5899999999999999999999999999999


Q ss_pred             EEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEEccCCcchHHHHHHHHH
Q 004461          523 IIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGAR  602 (752)
Q Consensus       523 LIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~ddreAL~~a~~  602 (752)
                      +||+|||++|+.||.+++.+..+|.+|++||++||||||||||||..+..+.......+||+++|.|||||||||+||+|
T Consensus       573 lIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~r  652 (832)
T PLN03159        573 LIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWR  652 (832)
T ss_pred             EEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999976433334445678999999999999999999999


Q ss_pred             HhhCCCeEEEEEEEeecccccCCcc--------------ccCCcCccccHHHHHHHHHhhcCCCCCeEEEEEEecChHHH
Q 004461          603 MAEHPGISFIVIRFLLAADAIGNTV--------------SVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAET  668 (752)
Q Consensus       603 ma~~~~~~ltvl~v~~~~~~~~~~~--------------~~~~~~~~~~d~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~  668 (752)
                      ||+||++++||+||++.++...+.+              ..++++|+++||++++||+.++..++++.|.|++|+||+|+
T Consensus       653 ma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~  732 (832)
T PLN03159        653 MSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEET  732 (832)
T ss_pred             HhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHH
Confidence            9999999999999997644321000              01235688899999999999988888999999999999999


Q ss_pred             HHHHHhccC-CCEEEEccCC--CccccccccCCCCCCccccchhhhccCCCCc-eeEEEEEeec
Q 004461          669 IAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS  728 (752)
Q Consensus       669 ~~~i~~~~~-~DLiivG~~~--~~~~~~gl~~w~e~peLG~igd~las~~~~~-~svLvvqq~~  728 (752)
                      ++++|++++ |||++|||+|  ++++++||+||+||||||+|||+|||+||++ +||||||||+
T Consensus       733 ~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~  796 (832)
T PLN03159        733 VAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV  796 (832)
T ss_pred             HHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence            999999998 9999999988  5899999999999999999999999999999 9999999998

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		752
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.1 bits (168), Expect = 4e-12
 Identities = 81/581 (13%), Positives = 176/581 (30%), Gaps = 190/581 (32%)

Query: 78  ERFLQAVFPPKSQTVLDTLANLG----LIFFMFLVGLELDPKSLRQTGKKALGIAIAGIS 133
           +   +++    S+  +D +            +F          L    ++ +   +    
Sbjct: 39  QDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWT--------LLSKQEEMVQKFVEE-- 85

Query: 134 LPFALGIGSSFLL----RETISKGVDSTSFL----VFMGVALSITAFPVLARILAELKLL 185
               L I   FL+     E     + +  ++               + V +R+   LKL 
Sbjct: 86  ---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKL- 140

Query: 186 TADVGRMAMSAAAVNDVAAWILLALAVALSGSGQSSLVPVWVFLSGCVFVICLTLFVPPT 245
                R A+        A  +L+     + GSG++ +      L  C+            
Sbjct: 141 -----RQALLEL---RPAKNVLI---DGVLGSGKTWVA-----LDVCLSYKVQCKMDFKI 184

Query: 246 FKWM-ARQCHEGPFANALVEKVEDLVSGI---FLPLYFVSSGLKTNIATIQG-----LQS 296
           F W+  + C+       ++E ++ L+  I   +      SS +K  I +IQ      L+S
Sbjct: 185 F-WLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 297 W----GLLAL--V----ILTA----CLGKI-VGTFVVSLSFKVPLREALALGILMNTKGL 341
                 LL L  V       A    C  KI + T    ++  +       + +  ++  L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 342 -----VELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR---ARVAD 393
                  L++  +    + L  +V                P  +++   + R   A   +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTN------------PRRLSIIAESIRDGLATWDN 346

Query: 394 YKHRTVERKNS--------------KAQFRILACFHSARNIPSTINLLEALRGIQKSEGL 439
           +KH   ++  +              +  F  L+ F  + +IP+ +              L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--------------L 392

Query: 440 CVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQLSRVSVRPM 499
            +                            W    +S+   +V       + S V  +P 
Sbjct: 393 SLI---------------------------WFDVIKSDVMVVV---NKLHKYSLVEKQPK 422

Query: 500 TAISSMSDMHEDICTTAESKRA--AIII--------------------------LPFH-K 530
            +  S+  ++ ++    E++ A    I+                          +  H K
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 531 HQRLDGSLETTRS---DFRWVNQRVLKH---APCSVGILID 565
           +      +   R    DFR++ Q+ ++H   A  + G +++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILN 522

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		752
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.92
3olq_A		319	Universal stress protein E; structural genomics, P	99.91
3loq_A		294	Universal stress protein; structural genomics, PSI	99.9
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.9
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.88
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.72
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.6
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.59
3fdx_A		143	Putative filament protein / universal stress PROT;	99.58
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.57
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.57
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	99.54
2z08_A		137	Universal stress protein family; uncharacterized c	99.53
3tnj_A		150	Universal stress protein (USP); structural genomic	99.53
3dlo_A		155	Universal stress protein; unknown function, struct	99.53
3fg9_A		156	Protein of universal stress protein USPA family; A	99.53
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	99.51
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.48
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	99.48
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.32
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	99.3
3olq_A		319	Universal stress protein E; structural genomics, P	99.23
3loq_A		294	Universal stress protein; structural genomics, PSI	99.18
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.09
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.08
3dlo_A		155	Universal stress protein; unknown function, struct	99.01
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.01
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.99
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	98.99
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	98.98
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.93
3fdx_A		143	Putative filament protein / universal stress PROT;	98.92
2z08_A		137	Universal stress protein family; uncharacterized c	98.92
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	98.89
3tnj_A		150	Universal stress protein (USP); structural genomic	98.89
3fg9_A		156	Protein of universal stress protein USPA family; A	98.86
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	98.77
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	98.67
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	98.61
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	98.04
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	96.45

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

Probab=99.92  E-value=2.1e-24  Score=228.19  Aligned_cols=263  Identities=12%  Similarity=0.060  Sum_probs=190.3

Q ss_pred             cceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCCCCCCCCCcchHHHHHH
Q 004461          407 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE  486 (752)
Q Consensus       407 e~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  486 (752)
                      -.|||+|+|+++.+..+++.|..++.   ..+.+++++|+++.                 .        + .++.++.+.
T Consensus         7 ~~~ILv~~D~s~~s~~al~~A~~la~---~~~a~l~ll~v~~~-----------------~--------~-~~~~l~~~~   57 (290)
T 3mt0_A            7 IRSILVVIEPDQLEGLALKRAQLIAG---VTQSHLHLLVCEKR-----------------R--------D-HSAALNDLA   57 (290)
T ss_dssp             CCEEEEECCSSCSCCHHHHHHHHHHH---HHCCEEEEEEECSS-----------------S--------C-CHHHHHHHH
T ss_pred             hceEEEEeCCCccchHHHHHHHHHHH---hcCCeEEEEEeeCc-----------------H--------H-HHHHHHHHH
Confidence            35899999999999999999999994   47788999999861                 0        0 133444444


Q ss_pred             HhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCceEEEecC
Q 004461          487 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR  566 (752)
Q Consensus       487 ~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~V~Ilv~r  566 (752)
                      +.....+++++.....+  +++++.|++.|++.++||||||+||+.++++.+      +||+.++|++++||||.++...
T Consensus        58 ~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~  129 (290)
T 3mt0_A           58 QELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTA  129 (290)
T ss_dssp             HHHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCC
T ss_pred             HHHhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCC
Confidence            44345678888877644  589999999999999999999999998888887      9999999999999998765322


Q ss_pred             CCCCCcccccCCcceEEEEEccCCcc-------hHHHHHHHHHHhhCCCeEEEEEEEeecccccCCccc-cCCcCccccH
Q 004461          567 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VDMAGNASMD  638 (752)
Q Consensus       567 g~~~~~~~~~~~~~~~I~v~~~gg~d-------dreAL~~a~~ma~~~~~~ltvl~v~~~~~~~~~~~~-~~~~~~~~~d  638 (752)
                       .       +. ..++|+++++|+++       ++.|+++|.++|+..+++++++++.++......... ...+..++..
T Consensus       130 -~-------~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~  200 (290)
T 3mt0_A          130 -R-------PW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARY  200 (290)
T ss_dssp             -S-------CS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHH
T ss_pred             -C-------CC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHH
Confidence             1       12 57899999999998       899999999999999999999999875332100000 0001112223


Q ss_pred             HHHHHHHHhhcCCCCCeEEEEEEecChHHHHHHHHhccCCCEEEEccCCCccccccccCCCCCCccccchhhhccCCCCc
Q 004461          639 EEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST  718 (752)
Q Consensus       639 ~~~l~e~~~~~~~~~~v~~~e~~v~~g~~~~~~i~~~~~~DLiivG~~~~~~~~~gl~~w~e~peLG~igd~las~~~~~  718 (752)
                      ++.++++..++... .+. .....++..+.+....+..++|||+||+|+    .+|+.+|    .+|++.+.++..--  
T Consensus       201 ~~~l~~~~~~~g~~-~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~~~--  268 (290)
T 3mt0_A          201 REACRTFQAEYGFS-DEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDTLE--  268 (290)
T ss_dssp             HHHHHHHHHHHTCC-TTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTTCS--
T ss_pred             HHHHHHHHHHcCCC-cce-EEEeccCHHHHHHHHHHhcCCCEEEECCCC----CcCCcce----ecchHHHHHHhcCC--
Confidence            45555665554221 111 122345666655544444459999999999    7888887    79999999998432  


Q ss_pred             eeEEEEEee
Q 004461          719 ASVLIIQQY  727 (752)
Q Consensus       719 ~svLvvqq~  727 (752)
                      +|||||..+
T Consensus       269 ~pVLvv~~~  277 (290)
T 3mt0_A          269 SDVLVLKPD  277 (290)
T ss_dssp             SEEEEECCH
T ss_pred             CCEEEECCC
Confidence            799999754

PyMOL of 3mt0

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		752
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.66
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.63
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.54
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.51
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.51
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.28
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.07
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.06
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.85
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.83
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.79
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.42

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=1.3e-16  Score=150.30  Aligned_cols=147  Identities=17%  Similarity=0.163  Sum_probs=102.6

Q ss_pred             ceEEEEeecCCChhHHHHHHHHhcCCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCC-CCCCCC----C---CCCcc
Q 004461          408 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGL-PFWNRG----R---QSNPN  479 (752)
Q Consensus       408 ~rILv~v~~s~~~~~~i~la~~la~~~~~~~~~v~~Lhvvel~~~~~~~~~~~~~~~~~~-~~~~~~----~---~~~~~  479 (752)
                      .|||+|+|+|+.+..+++.+..++   +..+.+++++|+++................... ...+..    .   .++.+
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la---~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFK---TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC---CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHH---HhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999   558889999999977543222110000000000 000000    0   00112


Q ss_pred             hHHHHHHHhhhccceEEEEeEEecCCCChHHHHHHHHHhcCccEEEecCCcccccCCccccccchhHHHHHHHhhcCCCc
Q 004461          480 HIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS  559 (752)
Q Consensus       480 ~i~~~~~~~~~~~~v~v~~~~~v~~~~~~~~~I~~~A~e~~adLIImg~hg~~~~~g~~~~~~~~~gsv~~~Vl~~ApC~  559 (752)
                      +.++.+.+..++.+++++..+..+   ++.+.||++|++.++||||||+||++++.+.+      +||++++|++++|||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCcccccc------cCcHHHHHHhcCCCC
Confidence            222222222334778888888877   89999999999999999999999999999988      999999999999999


Q ss_pred             eEEEecC
Q 004461          560 VGILIDR  566 (752)
Q Consensus       560 V~Ilv~r  566 (752)
                      |.|+..+
T Consensus       152 VlvV~~~  158 (160)
T d1mjha_         152 VLVVKRK  158 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9776544

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure