Citrus Sinensis ID: 004523

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------
MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGHITVEE
cccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccHHccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHcHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHcEEEEcccEEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccc
cEEEEEEccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccEcccccccccccccccccccEEEEEEcccccEEEEcccccccccccccccccccHHHcccccccccccccEEccccccccEEEEEEcccccccccccccEEEEEcccccccccHHHHHHcccccccccHHHHHHHHccccccEcccEEEEEEccccccccccccEEEEEEccHHHHHHccccccccccccccHHHHHHHcccccccEEEEEccccccHHccccccccEEccccccccccccHHcccccEEEHHHHcccccccccccccccccccccccccccccccEcccEcccccccccccccccccccHHHcccHHHHHccccccccccHcHHcHEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccEcEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHcHEEEcHHHccccccccccccccHHHHHHHHHHHcHEEccccEEEEEcccccHHHHHHHHHHHHHcccccEEcccccccccccccEccccEEccHHHcccccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEcccccccccEEcccccccccHHHHHHcccccccEEEcccHHHHHHHHHHHHcccccccc
migylfcssyevepsendlldhmpisreAAERDKDLANSKFLLSFManhpetntfhedvrttekpkvivdwnededservdkdenYFAVCAIcddggdvtfcdgrclrSFHATITAGKNALCQslgytqaqidavpnflcqncvyqehqcfacgmlgssdksssqevfpcvsatcgqfyhpecvskllhpdneSLAEELRERIaagesftcpvhkcfvcqqsedmnVEDLQLAICRrcpkayhrkclpteitfsdadenNFQRAWVDLLPNNRILIYCLEHKIIselktpardhlkfpgvegkrkkEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEvysgadvgmsnseikkrwprqdvhslkkpnitdtgrKSLKDiadkskpslrkdstllksrsfvvkpghrnidgskmknsisdrrrmkkvnisqpsvDAEMEKELLALIKDstssfneeefmkshivpithahhskHLLEKSITLGLVEGSVKAVRAALEMLdggcdiedakavcppeilCQIFQWKRKLDVYlapflhgmrytsfgrhftkVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEqmgkscsfrnydliqpkndfsfekrdwmtvrpeelpdgsqlimglnppfgvKASLANKFISQALKFKPKLIVLIVpqetrrldqkASYNLiwednevlsgksfylpgsldvhdnqleqwnckppplylwsradwTASHKKIalgrghitvee
MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHpetntfhedvrttekpkvivdwnededservdkdeNYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTeitfsdadenNFQRAWVDLLPNNRILIYCLEHKIiselktpardhlkfpgvegkrkkedLELLLteekdvaskrnivsesfvadktvvkkLKLAevysgadvgmsnseikkrwprqdvhslkkpnitdtgrkslkdiadkskpslrkdstllksrsfvvkpghrnidgskmknsisdrrrmkkvnisqpsvdaeMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLivpqetrrldqKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIalgrghitvee
MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGkrkkedlelllteekDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGHITVEE
**GYLFCSSY******************************FLLSFMA******************KVIVDW***********DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLG********EVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLK***************L**********RNIVSESFVADKTVVKKLKLAEVYSGADV****************************************************************************************************************FMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGH*****
*IGYLFCSSYE***************************************************************************FAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLG*SDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISE*************************************************************************************************************************************************************************************************************EGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKI***********
MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLG**********FPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGHITVEE
MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANH**********************************ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSD*SSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRN********************************************************************SLRKDSTLLKSRSFVVKPG************************SQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGR*******
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MIGYLFCSSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEKPKVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIISELKTPARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRLDQKASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGHITVEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query747 2.2.26 [Sep-21-2011]
Q55FD6688 PHD finger-containing pro yes no 0.207 0.225 0.322 5e-18
Q6P2L6 1439 Histone-lysine N-methyltr yes no 0.163 0.084 0.325 9e-13
O88491 2588 Histone-lysine N-methyltr no no 0.203 0.058 0.280 5e-12
Q8BVE81365 Histone-lysine N-methyltr no no 0.200 0.109 0.301 1e-11
Q96L73 2696 Histone-lysine N-methyltr no no 0.203 0.056 0.280 1e-11
Q9BZ95 1437 Histone-lysine N-methyltr no no 0.163 0.084 0.306 2e-11
O960281365 Histone-lysine N-methyltr no no 0.164 0.090 0.305 1e-10
>sp|Q55FD6|Y8158_DICDI PHD finger-containing protein DDB_G0268158 OS=Dictyostelium discoideum GN=DDB_G0268158 PE=4 SV=1 Back     alignment and function desciption
 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 28/183 (15%)

Query: 70  DWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQ 129
           + N+D+  +R  K+E   AVC  C+  G++  CDG CLRSFH +    +N    S     
Sbjct: 122 ETNDDDKPKRPRKNE---AVCTFCEKPGELLMCDGLCLRSFHISCLKARNLYNPSSSSIS 178

Query: 130 --AQIDAVPNFLCQNCVYQEHQCFAC---GMLGSSDKSSSQEVFPCVSATCGQFYHPECV 184
               ID    + C +CV  ++ CF+C   G++G        ++  C    CG+FYH +CV
Sbjct: 179 PVTTIDGTVRWECNDCVSSQNSCFSCKKRGIIGI-------DLMKCKVHQCGKFYHYKCV 231

Query: 185 SKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHR 244
           +      +  LA+ +  +      F CP+H C VC+ S D      Q   C RCP AYH 
Sbjct: 232 A------DYKLAKLINTKTPR---FNCPLHYCSVCEVSGDGK----QSVHCFRCPTAYHV 278

Query: 245 KCL 247
            C+
Sbjct: 279 ICM 281

Dictyostelium discoideum (taxid: 44689)
>sp|Q6P2L6|NSD3_MOUSE Histone-lysine N-methyltransferase NSD3 OS=Mus musculus GN=Whsc1l1 PE=1 SV=2 Back     alignment and function description
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BVE8|NSD2_MOUSE Histone-lysine N-methyltransferase NSD2 OS=Mus musculus GN=Whsc1 PE=1 SV=2 Back     alignment and function description
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BZ95|NSD3_HUMAN Histone-lysine N-methyltransferase NSD3 OS=Homo sapiens GN=WHSC1L1 PE=1 SV=1 Back     alignment and function description
>sp|O96028|NSD2_HUMAN Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens GN=WHSC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query747
225446989 1216 PREDICTED: uncharacterized protein LOC10 0.981 0.602 0.568 0.0
359494102 1260 PREDICTED: uncharacterized protein LOC10 0.973 0.576 0.557 0.0
147814981 2238 hypothetical protein VITISV_020586 [Viti 0.973 0.324 0.557 0.0
297739138 1025 unnamed protein product [Vitis vinifera] 0.874 0.637 0.589 0.0
297737514 1201 unnamed protein product [Vitis vinifera] 0.915 0.569 0.549 0.0
255576262 1249 protein binding protein, putative [Ricin 0.975 0.583 0.526 0.0
356569700 1225 PREDICTED: uncharacterized protein LOC10 0.974 0.594 0.509 0.0
357512983 1054 hypothetical protein MTR_8g009000 [Medic 0.888 0.629 0.526 0.0
356499417 1065 PREDICTED: uncharacterized protein LOC10 0.966 0.677 0.488 0.0
357459829 1289 hypothetical protein MTR_3g055370 [Medic 0.975 0.565 0.468 0.0
>gi|225446989|ref|XP_002268363.1| PREDICTED: uncharacterized protein LOC100248222 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/763 (56%), Positives = 557/763 (73%), Gaps = 30/763 (3%)

Query: 8   SSYEVEPSENDLLDHMPISREAAERDKDLANSKFLLSFMANH--------------PETN 53
           SSYE EPSENDLLDHMP+ +EA +R++DL  SK +L+++                   +N
Sbjct: 137 SSYEFEPSENDLLDHMPLIQEAVKREEDLLKSKCMLTYLPEKTGGETALYEGSLVLSSSN 196

Query: 54  TFHEDVRTTEKPKVIVDWNEDEDSERVDKDEN--YFAVCAICDDGGDVTFCDGRCLRSFH 111
               DV T  +   I D +++++ E  D+D +  + +VCAICD+GG++  C+GRCLRSFH
Sbjct: 197 IPSSDVHTMRRYTFIDDRDDNDEDEENDEDNDELFDSVCAICDNGGELLCCEGRCLRSFH 256

Query: 112 ATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCV 171
           AT+ AG  + C+SLG++ AQ++A+ NFLC+NC YQ+HQCF CGMLGSS++SS  EVF C 
Sbjct: 257 ATVDAGTESFCESLGFSDAQVEAIQNFLCKNCQYQQHQCFVCGMLGSSNESSGAEVFRCA 316

Query: 172 SATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNVEDLQ 231
           SATCG+FYHP CV+K LHP N  LA+ L+ +IA G SFTCP+HKCFVC++ E+  V+DLQ
Sbjct: 317 SATCGRFYHPYCVAKRLHPMNNILAKHLQNKIAGGVSFTCPLHKCFVCKRGENKGVDDLQ 376

Query: 232 LAICRRCPKAYHRKCLPTEITFS-DADENNFQRAWVDLLPNNRILIYCLEHKIISELKTP 290
            A+CRRCPKAYHRKCLP  I+F    +EN  QRAW+ LLPN RILIYC+EHKI  +L+TP
Sbjct: 377 FALCRRCPKAYHRKCLPGNISFECIYNENIMQRAWIGLLPN-RILIYCMEHKINRKLRTP 435

Query: 291 ARDHLKFPGVEGKRKKEDLELLLTEEKDVASKRNIVSESFVADKTVVKKLKLAEVYSGAD 350
            R+H++FP  E K KK   EL  + EK ++ KRNIVSE F A+ T VK  KL EV+    
Sbjct: 436 ERNHIRFPDPESKGKKHVSELPSSNEKVMSKKRNIVSEIFPAESTAVKMTKL-EVHRVVK 494

Query: 351 VGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKP-----SLRKDSTLLKSRS 405
              S    +KR   Q      K  I D  +K L+D   KS P     S+    T    R+
Sbjct: 495 DVDSTKFFEKRCSSQGFDPPTKQKINDATKKFLRDNV-KSVPVKICASVAVKGTQSSLRN 553

Query: 406 FVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLALIKDSTSSFNEEEFM 465
           + +KP  +NI  SK++   S +  MK+ + SQP +DAE+E  ++ L+K +TSSF+ EEF 
Sbjct: 554 YNIKPKQQNIP-SKVEKITSLKPSMKRASSSQPLMDAELETRIVDLMKSTTSSFSLEEFR 612

Query: 466 KSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQ 525
           +   V  ++   SK++L+ +IT G VE SVKA+R ALE L+ GC IEDAKAVC PE+L Q
Sbjct: 613 EKQKVLCSY---SKNVLDSTITQGKVEVSVKAIRTALEKLEKGCSIEDAKAVCEPEVLNQ 669

Query: 526 IFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGAND 585
           I +WKRKL VYLAPFLHGMRYTSFGRHFTKVEKL+E+VDRLHWYV+ GD IVDFCCG+ND
Sbjct: 670 IMRWKRKLKVYLAPFLHGMRYTSFGRHFTKVEKLREVVDRLHWYVQHGDMIVDFCCGSND 729

Query: 586 FSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSFEKRDWMTVRPEELPDGSQLIMGLNPPFG 645
           FSC+MK KL+++GKSCSF+NYDLIQPKNDFSFEKRDWM++  +ELP GSQLIMGLNPPFG
Sbjct: 730 FSCLMKEKLDKVGKSCSFKNYDLIQPKNDFSFEKRDWMSIHLDELPAGSQLIMGLNPPFG 789

Query: 646 VKASLANKFISQALKFKPKLIVLIVPQETRRLDQK-ASYNLIWEDNEVLSGKSFYLPGSL 704
           VKASLANKFI +AL F+PKL++LIVP+ET+RLD+K ++Y+LIWED ++LSGKSFYLPGS+
Sbjct: 790 VKASLANKFIDKALSFRPKLLILIVPKETKRLDEKDSAYDLIWEDEDILSGKSFYLPGSV 849

Query: 705 DVHDNQLEQWNCKPPPLYLWSRADWTASHKKIALGRGHITVEE 747
           D+HD QLEQWN  PP LYLWSR DWT+ HK +A   GHI++E+
Sbjct: 850 DMHDKQLEQWNLLPPLLYLWSRPDWTSRHKAVAQKCGHISIEQ 892

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359494102|ref|XP_002276879.2| PREDICTED: uncharacterized protein LOC100243584 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147814981|emb|CAN61366.1| hypothetical protein VITISV_020586 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739138|emb|CBI28789.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737514|emb|CBI26715.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576262|ref|XP_002529024.1| protein binding protein, putative [Ricinus communis] gi|223531504|gb|EEF33335.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356569700|ref|XP_003553034.1| PREDICTED: uncharacterized protein LOC100803073 [Glycine max] Back     alignment and taxonomy information
>gi|357512983|ref|XP_003626780.1| hypothetical protein MTR_8g009000 [Medicago truncatula] gi|355520802|gb|AET01256.1| hypothetical protein MTR_8g009000 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499417|ref|XP_003518537.1| PREDICTED: uncharacterized protein LOC100806429 [Glycine max] Back     alignment and taxonomy information
>gi|357459829|ref|XP_003600195.1| hypothetical protein MTR_3g055370 [Medicago truncatula] gi|355489243|gb|AES70446.1| hypothetical protein MTR_3g055370 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query747
TAIR|locus:2173857 1297 EDM2 "ENHANCED DOWNY MILDEW 2" 0.485 0.279 0.551 1.6e-186
TAIR|locus:2162667677 ELP1 "EDM2-like protein1" [Ara 0.400 0.441 0.596 6.5e-151
DICTYBASE|DDB_G0268158688 DDB_G0268158 "PHD zinc finger- 0.240 0.261 0.301 9.8e-18
MGI|MGI:12765741365 Whsc1 "Wolf-Hirschhorn syndrom 0.116 0.063 0.351 9.3e-09
RGD|1307748 2381 Nsd1 "nuclear receptor binding 0.121 0.038 0.342 2.7e-07
MGI|MGI:1276545 2588 Nsd1 "nuclear receptor-binding 0.121 0.035 0.342 3e-07
ZFIN|ZDB-GENE-080519-2 1873 nsd1b "nuclear receptor bindin 0.135 0.053 0.352 3.1e-07
UNIPROTKB|F1S8S01361 WHSC1 "Uncharacterized protein 0.113 0.062 0.330 5.1e-07
MGI|MGI:2142581 1439 Whsc1l1 "Wolf-Hirschhorn syndr 0.148 0.077 0.300 1.3e-06
UNIPROTKB|E1C6X8 1436 WHSC1L1 "Uncharacterized prote 0.255 0.133 0.266 2.2e-06
TAIR|locus:2173857 EDM2 "ENHANCED DOWNY MILDEW 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1025 (365.9 bits), Expect = 1.6e-186, Sum P(2) = 1.6e-186
 Identities = 203/368 (55%), Positives = 260/368 (70%)

Query:   379 GRKSLKDIADKSKPSLRKDSTLLKSRSFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQP 438
             G K  +D A KSK SL +           VKPG R I      N  +D    K+     P
Sbjct:   540 GVKEARD-AGKSKISLGERLFSYTQEPNPVKPG-RVIPVDSKHNK-TDSIASKEPGSEIP 596

Query:   439 SVDAEMEKELLALIKDSTSSFNEEEFMKSHIVPITHAHHS-KHLLEKSITLGLVEGSVKA 497
             ++D + ++ LLA++K +T        +K   +  T + HS +++++K+IT+G VEGSV+A
Sbjct:   597 TLDNDSQRRLLAVMKKATEEITMGTILKKFKIQSTMSTHSTRNVVDKTITMGKVEGSVQA 656

Query:   498 VRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVE 557
             +R AL+ L+ G +IEDAKAVC PE+L QI +WK KL VYLAPFLHG RYTSFGRHFT  E
Sbjct:   657 IRTALKKLEEGGNIEDAKAVCEPEVLSQILKWKDKLKVYLAPFLHGARYTSFGRHFTNPE 716

Query:   558 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPKNDFSF 617
             KL++IVDRLHWY   GD IVDFCCG+NDFSC+M  KLE+ GK C ++NYDL   KN+F+F
Sbjct:   717 KLQQIVDRLHWYADDGDMIVDFCCGSNDFSCLMNAKLEETGKKCLYKNYDLFPAKNNFNF 776

Query:   618 EKRDWMTVRPEELPDGSQLIMGLNPPFGVKASLANKFISQALKFKPKLIVLIVPQETRRL 677
             E++DWMTV  +EL  GS+LIMGLNPPFGV ASLANKFI++AL+F+PK+++LIVP ET RL
Sbjct:   777 ERKDWMTVSKDELEPGSKLIMGLNPPFGVNASLANKFITKALEFRPKILILIVPPETERL 836

Query:   678 DQK-ASYNLIWEDNEVLSGKSFYLPGSLDVHDNQLEQWNCKPPPLYLWSRADWTASHKKI 736
             D+K +SY LIWED   LSG SFYLPGS++  D QLE WN  PPPL LWSR+D+ A HKKI
Sbjct:   837 DKKKSSYVLIWEDKTFLSGNSFYLPGSVNEEDKQLEDWNLVPPPLSLWSRSDFAAKHKKI 896

Query:   737 ALGRGHIT 744
             A    H++
Sbjct:   897 AEKHCHLS 904
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0007165 "signal transduction" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
TAIR|locus:2162667 ELP1 "EDM2-like protein1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268158 DDB_G0268158 "PHD zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1276574 Whsc1 "Wolf-Hirschhorn syndrome candidate 1 (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307748 Nsd1 "nuclear receptor binding SET domain protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1276545 Nsd1 "nuclear receptor-binding SET-domain protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080519-2 nsd1b "nuclear receptor binding SET domain protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8S0 WHSC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2142581 Whsc1l1 "Wolf-Hirschhorn syndrome candidate 1-like 1 (human)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6X8 WHSC1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027233001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (1259 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 747
COG5141669 PHD zinc finger-containing protein [General functi 97.88
KOG4443694 consensus Putative transcription factor HALR/MLL3, 97.73
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 97.63
KOG4299613 consensus PHD Zn-finger protein [General function 97.61
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.51
KOG1973274 consensus Chromatin remodeling protein, contains P 97.49
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.49
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.49
KOG4299613 consensus PHD Zn-finger protein [General function 97.37
KOG1512381 consensus PHD Zn-finger protein [General function 97.18
PRK00274272 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 97.11
KOG1244336 consensus Predicted transcription factor Requiem/N 97.1
PHA03412241 putative methyltransferase; Provisional 97.06
KOG0954893 consensus PHD finger protein [General function pre 97.01
KOG4443694 consensus Putative transcription factor HALR/MLL3, 96.98
PF02384311 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T 96.91
KOG0956 900 consensus PHD finger protein AF10 [General functio 96.86
TIGR02987 524 met_A_Alw26 type II restriction m6 adenine DNA met 96.8
KOG0383696 consensus Predicted helicase [General function pre 96.59
KOG1244336 consensus Predicted transcription factor Requiem/N 96.45
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 96.39
TIGR00755253 ksgA dimethyladenosine transferase. Alternate name 96.27
PRK14896258 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 96.27
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 96.01
PF01170179 UPF0020: Putative RNA methylase family UPF0020; In 95.94
PTZ00338294 dimethyladenosine transferase-like protein; Provis 95.81
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 95.6
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.02
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 94.36
KOG1512381 consensus PHD Zn-finger protein [General function 93.86
PF00398262 RrnaAD: Ribosomal RNA adenine dimethylase; InterPr 93.71
KOG0383696 consensus Predicted helicase [General function pre 93.25
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 92.56
KOG0957707 consensus PHD finger protein [General function pre 92.4
PF13659117 Methyltransf_26: Methyltransferase domain; PDB: 3G 92.38
TIGR00479431 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. 92.0
PRK10909199 rsmD 16S rRNA m(2)G966-methyltransferase; Provisio 91.66
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 91.39
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 91.37
smart00650169 rADc Ribosomal RNA adenine dimethylases. 91.21
COG2263198 Predicted RNA methylase [Translation, ribosomal st 90.48
KOG0825 1134 consensus PHD Zn-finger protein [General function 89.3
PRK13168443 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe 89.08
TIGR01177329 conserved hypothetical protein TIGR01177. This fam 88.33
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 88.04
PHA03411279 putative methyltransferase; Provisional 87.77
PF05175170 MTS: Methyltransferase small domain; InterPro: IPR 85.34
KOG1973274 consensus Chromatin remodeling protein, contains P 84.93
TIGR02085374 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer 84.39
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 83.79
TIGR03534251 RF_mod_PrmC protein-(glutamine-N5) methyltransfera 83.79
PF07669106 Eco57I: Eco57I restriction-modification methylase; 83.69
COG2265432 TrmA SAM-dependent methyltransferases related to t 82.44
KOG0957707 consensus PHD finger protein [General function pre 82.35
TIGR03704251 PrmC_rel_meth putative protein-(glutamine-N5) meth 82.15
PRK03522315 rumB 23S rRNA methyluridine methyltransferase; Rev 81.94
PF02475200 Met_10: Met-10+ like-protein; InterPro: IPR003402 81.45
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 81.12
KOG0956 900 consensus PHD finger protein AF10 [General functio 80.09
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information 
Probab=97.88  E-value=5e-06  Score=92.94  Aligned_cols=91  Identities=25%  Similarity=0.636  Sum_probs=65.9

Q ss_pred             CCCCcccccccCCC-----CCeeecCCccccccccccccCccccccccCCcccccCCCCceecccccccCcc---ccccc
Q 004523           83 DENYFAVCAICDDG-----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQ---CFACG  154 (747)
Q Consensus        83 dd~~DdVCaIC~dg-----GeLLcCdG~C~RsFH~~C~~g~~s~C~~LGlt~~ev~~~~~W~C~eC~~~~h~---CfvCg  154 (747)
                      +|..|+.|++|...     ..++.||| |.-+.|..|          .|+.-.   |+|.|+|..|.++.++   |.-|-
T Consensus       189 ~d~~d~~C~~c~~t~~eN~naiVfCdg-C~i~VHq~C----------YGI~f~---peG~WlCrkCi~~~~~i~~C~fCp  254 (669)
T COG5141         189 SDEFDDICTKCTSTHNENSNAIVFCDG-CEICVHQSC----------YGIQFL---PEGFWLCRKCIYGEYQIRCCSFCP  254 (669)
T ss_pred             chhhhhhhHhccccccCCcceEEEecC-cchhhhhhc----------ccceec---CcchhhhhhhcccccceeEEEecc
Confidence            44678999999765     34999997 999999996          676432   6799999999987653   55554


Q ss_pred             cCCCC-----CC--------------------------------------------CCCCceecccCCCcCCCCcccccc
Q 004523          155 MLGSS-----DK--------------------------------------------SSSQEVFPCVSATCGQFYHPECVS  185 (747)
Q Consensus       155 k~Gss-----d~--------------------------------------------ss~aeV~kCsv~~CGKfYH~~CL~  185 (747)
                      ...-.     |+                                            .-++.-++|+..+|.+.||..|..
T Consensus       255 s~dGaFkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCAr  334 (669)
T COG5141         255 SSDGAFKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCAR  334 (669)
T ss_pred             CCCCceeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhh
Confidence            32110     00                                            013456789999999999999976


Q ss_pred             cc
Q 004523          186 KL  187 (747)
Q Consensus       186 ~~  187 (747)
                      ..
T Consensus       335 ra  336 (669)
T COG5141         335 RA  336 (669)
T ss_pred             hc
Confidence            53

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PHA03412 putative methyltransferase; Provisional Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>TIGR00755 ksgA dimethyladenosine transferase Back     alignment and domain information
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase Back     alignment and domain information
>PTZ00338 dimethyladenosine transferase-like protein; Provisional Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A Back     alignment and domain information
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA Back     alignment and domain information
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>smart00650 rADc Ribosomal RNA adenine dimethylases Back     alignment and domain information
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed Back     alignment and domain information
>TIGR01177 conserved hypothetical protein TIGR01177 Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PHA03411 putative methyltransferase; Provisional Back     alignment and domain information
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific Back     alignment and domain information
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] Back     alignment and domain information
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific Back     alignment and domain information
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed Back     alignment and domain information
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query747
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 1e-06
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 9e-06
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 86/666 (12%), Positives = 180/666 (27%), Gaps = 212/666 (31%)

Query: 10  YEVEPSENDLL-----DHMPISREAAERDKDLANSKFLLSFMANHPETNTFHEDVRTTEK 64
            +V+     +L     DH+ +S++A         +  L   + +  E     + V    +
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSG------TLRLFWTLLSKQE-EMVQKFVEEVLR 88

Query: 65  P--KVIVDWNEDEDSERVDKDENYFAVCAICDDGGDVTFCDGRCLRSFHAT----ITAGK 118
              K ++   + E  +       Y        +  D  + D +    ++ +        +
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMY-------IEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 119 NALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSS----------SQEVF 168
            AL +        +    N L    +         G+LGS  K+            Q   
Sbjct: 142 QALLE--------LRPAKNVL----ID--------GVLGSG-KTWVALDVCLSYKVQCKM 180

Query: 169 PC-VS-ATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMN 226
              +          PE V ++L    + L  ++     +    +  +           + 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI----------KLR 226

Query: 227 VEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRIL----IYCLEHK 282
           +  +Q  + R      +  CL   +   +               N +      + C   K
Sbjct: 227 IHSIQAELRRLLKSKPYENCL---LVLLNV--------Q-----NAKAWNAFNLSC---K 267

Query: 283 IISELKTPARDHLKFPGVEGKRKK----EDLELLLTEEKDVASKRNIVSESFVADKTVVK 338
           I+  L T  R       +          +   + LT ++          +S +      +
Sbjct: 268 IL--LTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSLLLKYLDCR 314

Query: 339 KLKL-AEVYSG-----ADVGMSNSEIKKRWPRQDVHSLKKPNITDTGRKSLKDIADKSKP 392
              L  EV +      + +  S  +    W        K  N        L  I + S  
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDN-----WKHVNC-----DKLTTIIESSLN 364

Query: 393 SLRKDSTLLKSR--SFVVKPGHRNIDGSKMKNSISDRRRMKKVNISQPSVDAEMEKELLA 450
            L  +    +       V P                       +I  P+        LL+
Sbjct: 365 VL--EPAEYRKMFDRLSVFP--------------------PSAHI--PT-------ILLS 393

Query: 451 LIKDSTSSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEML--DGG 508
           LI       +    +               L + S    LVE   K    ++  +  +  
Sbjct: 394 LIWFDVIKSDVMVVVN-------------KLHKYS----LVEKQPKESTISIPSIYLELK 436

Query: 509 CDIEDAKAVCPPEILCQIFQWKRKLDVY--LAPFLHGMRYTSFGRHFTKVEKLKEIVDRL 566
             +E+  A+     +   +   +  D    + P+L    Y+  G H   +E  + +    
Sbjct: 437 VKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 567 HWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCS-----------FRNY-DLIQPKND 614
             +       +DF      F   ++ K+     + +            + Y   I   ND
Sbjct: 495 MVF-------LDF-----RF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DND 538

Query: 615 FSFEKR 620
             +E+ 
Sbjct: 539 PKYERL 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query747
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.45
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.38
d2okca1425 Type I restriction enzyme StySJI M protein {Bacter 97.79
d2ar0a1 524 M.EcoKI {Escherichia coli [TaxId: 562]} 97.5
d2f8la1328 Hypothetical protein Lmo1582 {Listeria monocytogen 97.39
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.31
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.17
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.16
d2ih2a1223 DNA methylase TaqI, N-terminal domain {Thermus aqu 97.15
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.13
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.06
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 96.91
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.71
d1wema_76 Death associated transcription factor 1, Datf1 (DI 96.52
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 96.36
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 96.2
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 95.5
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 95.41
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 94.83
d1ne2a_197 Hypothetical protein Ta1320 {Archaeon Thermoplasma 94.47
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 93.82
d1wy7a1201 Hypothetical protein PH1948 {Archaeon Pyrococcus h 93.39
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 91.49
d1wema_76 Death associated transcription factor 1, Datf1 (DI 88.21
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 87.8
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 87.47
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 84.24
d1yuba_245 rRNA adenine dimethylase {Streptococcus pneumoniae 83.78
d1uwva2358 rRNA (Uracil-5-)-methyltransferase RumA, catalytic 82.89
d2esra1152 Putative methyltransferase SPy1538 {Streptococcus 81.1
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.1e-08  Score=65.99  Aligned_cols=52  Identities=27%  Similarity=0.726  Sum_probs=40.0

Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf             7887543320277897020277434455453224753100026986312498986416546224
Q 004523           83 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ  146 (747)
Q Consensus        83 dd~~DdVCaIC~dgGeLLcCdG~C~RsFH~~C~~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~  146 (747)
                      ++.++++|.+|.++|+||.|++ |.++||..|+          ++....+ +.+.|+|+.|...
T Consensus         5 ~d~~~~~C~~C~~~g~lv~Cd~-C~~~~H~~C~----------~~~~~~~-~~~~W~C~~C~~~   56 (61)
T d1mm2a_           5 SDHHMEFCRVCKDGGELLCCDT-CPSSYHIHCL----------NPPLPEI-PNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCSSCTTTCCCSSCBCCSS-SCCCBCSSSS----------SSCCSSC-CSSCCCCTTTTTT
T ss_pred             CCCCCCCCCCCCCCCEEEEECC-CCCCCCHHHC----------CCCCCCC-CCCCEECCCCCCC
T ss_conf             6688689867899795888699-9960761145----------8885758-9976899788384
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Back     information, alignment and structure
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure