Citrus Sinensis ID: 004543

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-----
MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN
cEEEHHHcccEEEEEEcccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHccccccccccccccEEEEEccEEEcccccHHHHccccccHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEcccccccccccccccHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccEEEEEcccEEEEEccccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEcccHHHccccccHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHccccEEEEEEccccccccccHHHHHHHHccccHHHcccccHHHHHHHHHHHHcccccccEEccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHccccccccHHcHccccccccccccc
MLAAVLWLGNVSFtvidnenhvepvadegLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVgkrrtgrsisildiygfesfdrnSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDwakvdfednkdclnlfekkplgllslldeestfpngtdlTFANKLKqhlnsnpcfrgerdksftvshyageviydttgfleknrdllhldsiellsscschlpqifasnmlsqsnkpvvgplykaggadsqkLSVATKFKGQLFQLMQRLesttphfircikpnnfqspglyeQGLVLQQLRCCGVLEVVRIsrsgfptrmshQKFARRYGFLLLEsvasqdplSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRrcsgdicllksveskgndsdevLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKslaiddsernsdasvnasdeveyswdtgsnckgqesngvrpmsaGLSVISRLAEEFdqrsqvfgddaKFLVEVKSgqveaslnpDKELRRLKQMFEAWKKDYGSRLRETKVILNKlgseegaidrvkkkwwgrrnstrin
MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIvqnltlsqatDTRDALAKSIYACLFEWLVEQINKSlavgkrrtgrsiSILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRIsrsgfptrmshQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVAlqsfirgekiRKEYALVLQRHRAAVVIQRQIKSRvarqklknikyssimIQSVIRGWLVRRCSGDICLLKsveskgndsdevLVKASFLAELQRRVLKAEAAlrekeeendilhqrLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKslaiddsernsdasvnasdeveyswdtgsnckgqesngvrpMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVksgqveaslnpdkelRRLKQMFEAWkkdygsrlrETKVilnklgseegaidrvkkkwwgrrnstrin
MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVlkaeaalrekeeeNDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN
**AAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQ**KPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVE*******EVLVKASFLAELQRRVL**********************************************************************************************************************VFGDDAKFLVEV*****************LKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWG********
MLAAVLWLGNVSF***************GLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAV**RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFA********************************KGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA**DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK*************VKASFLAEL*************************************************************************************************************************************************************EAWKKD***************************************
MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK******************LSIAKKSLAI*******************SWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN
MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFAS*************************SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSI*********************************************SAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLG***********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query745 2.2.26 [Sep-21-2011]
Q02440 1829 Unconventional myosin-Va yes no 0.681 0.277 0.399 1e-108
Q9Y4I1 1855 Unconventional myosin-Va yes no 0.681 0.273 0.407 1e-108
Q9QYF3 1828 Unconventional myosin-Va yes no 0.677 0.276 0.410 1e-107
Q99104 1853 Unconventional myosin-Va yes no 0.677 0.272 0.409 1e-107
Q9NQX4 1742 Unconventional myosin-Vc no no 0.676 0.289 0.403 1e-100
P21271 1818 Unconventional myosin-Vb no no 0.681 0.279 0.387 4e-98
P54697 2245 Myosin-J heavy chain OS=D yes no 0.786 0.261 0.342 6e-98
P70569 1846 Unconventional myosin-Vb no no 0.683 0.275 0.379 2e-96
Q9ULV0 1848 Unconventional myosin-Vb no no 0.684 0.275 0.370 2e-96
O94477 1516 Myosin-52 OS=Schizosaccha yes no 0.763 0.375 0.330 2e-92
>sp|Q02440|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1 Back     alignment and function desciption
 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 316/531 (59%), Gaps = 23/531 (4%)

Query: 1   MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
           +LA +L LGNV F   D+++   P   + L     L+G D  E+   L  RK+    +T 
Sbjct: 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETY 387

Query: 61  VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
           ++ ++   A + RDALAK IYA LF W+V+ +NK+L    ++    I +LDIYGFE+F+ 
Sbjct: 388 IKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHS-FIGVLDIYGFETFEI 446

Query: 121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
           NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W  +DF DN+ C+NL E K +G+
Sbjct: 447 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 505

Query: 181 LSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFL 237
           L LLDEE   P G+D T+A KL   HLN    F   R  +K+F + H+A +V Y   GFL
Sbjct: 506 LDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL 565

Query: 238 EKNRDLLHLDSIELLSSCSCH--LPQIF-------------ASNMLSQSNKPVVGPLYKA 282
           EKN+D ++ + I++L S      LP++F              S  +  S  PV     + 
Sbjct: 566 EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARP 625

Query: 283 G-GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCC 341
           G  +   K +V  +F+  L  LM+ L +TTPH++RCIKPN+F+ P  +++   +QQLR C
Sbjct: 626 GQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRAC 685

Query: 342 GVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVG 401
           GVLE +RIS +GFP+R ++Q+F  RY  L+ +     D       +L +  +  + YQ G
Sbjct: 686 GVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFG 745

Query: 402 YTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEK 460
            TK+FFRAGQ+  LE  R   L    +R+Q   RG   R     +RR  + +Q ++RG +
Sbjct: 746 KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQ 805

Query: 461 IRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVR 511
            R  YA  L+R RAA++IQ+  +  V R++ + ++ ++I +Q+++RG+LVR
Sbjct: 806 ARC-YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVR 855
Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. May be involved in melanosome transport, or alternatively, it may be required for some polarization process involved in dendrite formation.
Gallus gallus (taxid: 9031)
>sp|Q9Y4I1|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2 Back     alignment and function description
>sp|Q9QYF3|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1 Back     alignment and function description
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2 Back     alignment and function description
>sp|Q9NQX4|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2 Back     alignment and function description
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2 Back     alignment and function description
>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2 Back     alignment and function description
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1 Back     alignment and function description
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3 Back     alignment and function description
>sp|O94477|MYO52_SCHPO Myosin-52 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=myo52 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query745
224083870 1173 predicted protein [Populus trichocarpa] 0.997 0.633 0.895 0.0
224096506 1174 predicted protein [Populus trichocarpa] 0.997 0.632 0.885 0.0
255565536 1181 myosin vIII, putative [Ricinus communis] 0.995 0.628 0.884 0.0
225463689 1197 PREDICTED: myosin-J heavy chain-like [Vi 1.0 0.622 0.869 0.0
297742765 1135 unnamed protein product [Vitis vinifera] 1.0 0.656 0.869 0.0
147844473 1161 hypothetical protein VITISV_032704 [Viti 1.0 0.641 0.869 0.0
356536431 1106 PREDICTED: myosin-J heavy chain-like [Gl 1.0 0.673 0.857 0.0
356530262 1177 PREDICTED: myosin-J heavy chain-like [Gl 1.0 0.632 0.855 0.0
356576949 1176 PREDICTED: myosin-J heavy chain-like [Gl 0.998 0.632 0.853 0.0
449458801 1175 PREDICTED: myosin-J heavy chain-like [Cu 0.995 0.631 0.858 0.0
>gi|224083870|ref|XP_002307152.1| predicted protein [Populus trichocarpa] gi|222856601|gb|EEE94148.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1392 bits (3604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/744 (89%), Positives = 709/744 (95%), Gaps = 1/744 (0%)

Query: 1    MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
            MLAAVLWLGNVSF+++DNENHVEP+ADEGL TVAKLIGC++GELKLALSTRKMRVGNDTI
Sbjct: 428  MLAAVLWLGNVSFSIVDNENHVEPLADEGLTTVAKLIGCNVGELKLALSTRKMRVGNDTI 487

Query: 61   VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
            VQ L+LSQA DTRDALAKSIY+CLF+WLVEQ+NKSLAVGKRRTGRSISILDIYGFESF+R
Sbjct: 488  VQKLSLSQAIDTRDALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILDIYGFESFER 547

Query: 121  NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
            NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW KVDF+DN+DCLNLFEKKPLGL
Sbjct: 548  NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLNLFEKKPLGL 607

Query: 181  LSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKN 240
            LSLLDEESTFPNGTDLTFANKLKQHLNSN CFRGER K+F+VSHYAGEV YDTTGFLEKN
Sbjct: 608  LSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVSHYAGEVTYDTTGFLEKN 667

Query: 241  RDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 300
            RDLLHLDSI+LLSSCSCHLPQIFASNML+QS KPVVGPLYKAGGADSQKLSVATKFKGQL
Sbjct: 668  RDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKPVVGPLYKAGGADSQKLSVATKFKGQL 727

Query: 301  FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 360
            FQLMQRLE+TTPHFIRCIKPNN QSPG YEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH
Sbjct: 728  FQLMQRLENTTPHFIRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 787

Query: 361  QKFARRYGFLLLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 419
            QKFARRYGFLLLESVA SQDPLS+SVAILHQF+ILPEMYQVGYTKLFFR GQIG+LEDTR
Sbjct: 788  QKFARRYGFLLLESVAYSQDPLSISVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTR 847

Query: 420  NRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQ 479
            N TLHGILRVQSCFRGHQAR  L+EL+RGI  LQSF+RGEKIRKEYA+  QRHRAAVVIQ
Sbjct: 848  NHTLHGILRVQSCFRGHQARAYLRELKRGICVLQSFVRGEKIRKEYAVSQQRHRAAVVIQ 907

Query: 480  RQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASF 539
            R IKS +  +K K++  +SIMIQSVIRGWLVRR SGD+ LLKS  +KGN+SDEVLVKASF
Sbjct: 908  RHIKSTICGKKYKDMHQASIMIQSVIRGWLVRRFSGDVGLLKSGATKGNESDEVLVKASF 967

Query: 540  LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 599
            LAELQRRVLKAEAALREKEEEND+LHQRLQQYE+RWSEYE KMKSMEEVWQKQMRSLQSS
Sbjct: 968  LAELQRRVLKAEAALREKEEENDVLHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSS 1027

Query: 600  LSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAE 659
            LSIAKKSLAIDDSERNSDASVNASDE E+SWDTGSN +GQESN  RPMSAGLSVISR+AE
Sbjct: 1028 LSIAKKSLAIDDSERNSDASVNASDEREFSWDTGSNHRGQESNSARPMSAGLSVISRMAE 1087

Query: 660  EFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILN 719
            EF+QRSQVFGDDAKFLVEVKSGQVEASLNPD+ELRRLKQMFEAWKKDYGSRLRETKVILN
Sbjct: 1088 EFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSRLRETKVILN 1147

Query: 720  KLGSEEGAIDRVKKKWWGRRNSTR 743
            KLG+EEGA+DRVK+KWWGRRNSTR
Sbjct: 1148 KLGTEEGALDRVKRKWWGRRNSTR 1171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224096506|ref|XP_002310637.1| predicted protein [Populus trichocarpa] gi|222853540|gb|EEE91087.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565536|ref|XP_002523758.1| myosin vIII, putative [Ricinus communis] gi|223536970|gb|EEF38607.1| myosin vIII, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225463689|ref|XP_002273898.1| PREDICTED: myosin-J heavy chain-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742765|emb|CBI35399.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147844473|emb|CAN82090.1| hypothetical protein VITISV_032704 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536431|ref|XP_003536741.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356530262|ref|XP_003533701.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356576949|ref|XP_003556592.1| PREDICTED: myosin-J heavy chain-like [Glycine max] Back     alignment and taxonomy information
>gi|449458801|ref|XP_004147135.1| PREDICTED: myosin-J heavy chain-like [Cucumis sativus] gi|449503518|ref|XP_004162042.1| PREDICTED: myosin-J heavy chain-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query745
TAIR|locus:20119221153 VIIIA [Arabidopsis thaliana (t 0.994 0.642 0.781 2e-310
TAIR|locus:21625501220 ATM2 "myosin 2" [Arabidopsis t 0.974 0.595 0.513 1.8e-190
UNIPROTKB|F1NK42 1853 MYO5A "Unconventional myosin-V 0.348 0.140 0.455 4.6e-104
UNIPROTKB|F1NK41 1857 MYO5A "Unconventional myosin-V 0.348 0.140 0.455 4.6e-104
UNIPROTKB|F1LV42 1853 F1LV42 "Uncharacterized protei 0.350 0.140 0.471 5.5e-104
RGD|3143 1828 Myo5a "myosin VA" [Rattus norv 0.350 0.142 0.471 1.3e-103
UNIPROTKB|Q02440 1829 MYO5A "Unconventional myosin-V 0.348 0.142 0.453 1.8e-103
UNIPROTKB|F1NQB6 1832 MYO5A "Unconventional myosin-V 0.348 0.141 0.453 1.9e-103
UNIPROTKB|Q9NQX4 1742 MYO5C "Unconventional myosin-V 0.675 0.288 0.409 1.9e-99
UNIPROTKB|F1RZD2 1896 MYO5A "Uncharacterized protein 0.413 0.162 0.417 1.4e-98
TAIR|locus:2011922 VIIIA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2978 (1053.4 bits), Expect = 2.0e-310, P = 2.0e-310
 Identities = 582/745 (78%), Positives = 643/745 (86%)

Query:     1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
             MLAAVLWLGNVSFT+IDNENHVEP  DE L TVAKLIGC+I ELKLALS R MRV NDTI
Sbjct:   410 MLAAVLWLGNVSFTIIDNENHVEPEPDESLSTVAKLIGCNINELKLALSKRNMRVNNDTI 469

Query:    61 VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
             VQ LTLSQA D RDALAKSIYACLF+WLVEQINKSLAVGKRRTGRSISILDIYGFESF++
Sbjct:   470 VQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNK 529

Query:   121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
             NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW +VDFEDN++CL+LFEKKPLGL
Sbjct:   530 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDFEDNQECLSLFEKKPLGL 589

Query:   181 LSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKN 240
             LSLLDEESTFPNGTDLT ANKLKQHLN N CFRG+R K+FTV+HYAGEV Y+TTGFLEKN
Sbjct:   590 LSLLDEESTFPNGTDLTLANKLKQHLNDNSCFRGDRGKAFTVAHYAGEVTYETTGFLEKN 649

Query:   241 RDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 300
             RDLLH DSI+LLSSCSCHLPQ FAS+ML  S KP+VGPL+KAGGADSQ+LSVATKFKGQL
Sbjct:   650 RDLLHSDSIQLLSSCSCHLPQAFASSMLIYSEKPLVGPLHKAGGADSQRLSVATKFKGQL 709

Query:   301 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 360
             FQLMQRL +TTPHFIRCIKPNN QS GLYEQGLVLQQLRCCGVLEVVRISRSGFPTRM H
Sbjct:   710 FQLMQRLGNTTPHFIRCIKPNNVQSAGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMFH 769

Query:   361 QKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 420
              KFARRYGFLLLE++A++DPLSVSVAILHQFNILPEMYQVGYTKLFFR GQIG+LEDTRN
Sbjct:   770 HKFARRYGFLLLENIAAKDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRN 829

Query:   421 RTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQR 480
             RTLHGILR+QS FRGHQAR  LKEL+ GI  LQSF+RGEK+RKEY  +LQRHRA+  IQ 
Sbjct:   830 RTLHGILRLQSYFRGHQARCRLKELKTGITILQSFVRGEKMRKEYTELLQRHRASAAIQS 889

Query:   481 QIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFL 540
              +K R+A Q+ K    +S +IQS IRG LVRRC+GDI  L S  +K N+SDEVLVKAS+L
Sbjct:   890 HVKRRIASQQYKATVDASAVIQSAIRGELVRRCAGDIGWLSSGGTKRNESDEVLVKASYL 949

Query:   541 AELQRRVXXXXXXXXXXXXXNDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSL 600
             ++LQRRV             NDIL QR+QQY++RWSEYE KMKSMEE+WQKQM+SLQSSL
Sbjct:   950 SDLQRRVLRTEAALREKEEENDILRQRVQQYDNRWSEYETKMKSMEEIWQKQMKSLQSSL 1009

Query:   601 SIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEE 660
             SIAKKSL ++DS RNSDASVNASD  +   D+G +         R +  GLSVISRLAEE
Sbjct:  1010 SIAKKSLEVEDSARNSDASVNASDATDL--DSGGSHYQMGHGRSRSVGVGLSVISRLAEE 1067

Query:   661 FDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNK 720
             F QR+QVFGDD KFL+EVKSGQVEA+LNPD+ELRRLKQMFE WKKDYG RLRETK+IL+K
Sbjct:  1068 FGQRAQVFGDDRKFLMEVKSGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETKLILSK 1127

Query:   721 LGSEE--GAIDRVKKKWWGRRNSTR 743
             LGSEE  G+ ++VK  WWGR  STR
Sbjct:  1128 LGSEETGGSAEKVKMNWWGRLRSTR 1152
GO:0003774 "motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016459 "myosin complex" evidence=ISS
GO:0030048 "actin filament-based movement" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2162550 ATM2 "myosin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK42 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK41 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LV42 F1LV42 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|3143 Myo5a "myosin VA" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q02440 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQB6 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQX4 MYO5C "Unconventional myosin-Vc" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZD2 MYO5A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V000294
hypothetical protein (1173 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query745
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 0.0
smart00242677 smart00242, MYSc, Myosin 0.0
cd00124679 cd00124, MYSc, Myosin motor domain 1e-167
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 1e-142
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 1e-141
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 1e-139
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 1e-139
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-137
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-125
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 1e-118
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 1e-101
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 2e-99
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 8e-93
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 1e-90
PTZ00014821 PTZ00014, PTZ00014, myosin-A; Provisional 7e-64
cd01386767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 9e-21
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information 
 Score =  829 bits (2144), Expect = 0.0
 Identities = 358/419 (85%), Positives = 381/419 (90%), Gaps = 2/419 (0%)

Query: 1   MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
           MLAAVLWLGNVSFTVIDNENHVEPVADE L T AKLIGC+I +L LALSTRKM V ND I
Sbjct: 261 MLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNI 320

Query: 61  VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
           VQ LTL QA D RDALAKSIYA LF+WLVEQINKSL VGKRRTGRSISILDIYGFESFD+
Sbjct: 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDK 380

Query: 121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
           NSFEQFCINYANERLQQHFNRHLFKLEQEEY +DGIDW KV+FEDN++CL+LFEKKPLGL
Sbjct: 381 NSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGL 440

Query: 181 LSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKN 240
           LSLLDEESTFPN TDLTFANKLKQHL +N CFRGER  +FTV HYAGEV YDTTGFLEKN
Sbjct: 441 LSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKN 500

Query: 241 RDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 300
           RDLLH DSI+LLSSC C LPQ+FAS+ML QS  PVVGPLY A  ADSQKLSV TKFKGQL
Sbjct: 501 RDLLHSDSIQLLSSCKCQLPQLFASSMLIQS--PVVGPLYVASAADSQKLSVGTKFKGQL 558

Query: 301 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 360
           F+LMQ+LE+TTPHFIRCIKPNN Q PG+YEQGLVLQQLRCCGVLEVVRISRSG+PTRM+H
Sbjct: 559 FKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTH 618

Query: 361 QKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 419
           Q+FARRYGFLLLE++ASQDPLSVSVAIL QFNILPEMYQVGYTKLFFR GQIG LEDTR
Sbjct: 619 QEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 745
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014821 myosin-A; Provisional 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 100.0
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
KOG01621106 consensus Myosin class I heavy chain [Cytoskeleton 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 100.0
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 100.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.12
KOG0160862 consensus Myosin class V heavy chain [Cytoskeleton 98.04
KOG0520975 consensus Uncharacterized conserved protein, conta 97.9
COG5022 1463 Myosin heavy chain [Cytoskeleton] 97.38
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.32
KOG2128 1401 consensus Ras GTPase-activating protein family - I 97.07
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.95
KOG01641001 consensus Myosin class I heavy chain [Cytoskeleton 96.53
PTZ00014821 myosin-A; Provisional 96.03
smart0001526 IQ Short calmodulin-binding motif containing conse 95.97
smart0001526 IQ Short calmodulin-binding motif containing conse 95.88
KOG2128 1401 consensus Ras GTPase-activating protein family - I 94.99
KOG42291062 consensus Myosin VII, myosin IXB and related myosi 94.63
KOG0163 1259 consensus Myosin class VI heavy chain [Cytoskeleto 93.64
KOG0520975 consensus Uncharacterized conserved protein, conta 93.51
KOG09711243 consensus Microtubule-associated protein dynactin 90.02
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 88.23
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 87.66
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 86.5
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 85.16
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 84.51
PRK11637 428 AmiB activator; Provisional 84.27
PRK09039343 hypothetical protein; Validated 84.12
TIGR0244965 conserved hypothetical protein TIGR02449. Members 83.71
PRK13729 475 conjugal transfer pilus assembly protein TraB; Pro 83.48
COG3883265 Uncharacterized protein conserved in bacteria [Fun 82.83
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.25
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-121  Score=1065.96  Aligned_cols=495  Identities=41%  Similarity=0.685  Sum_probs=453.3

Q ss_pred             ChhHHHhhcCcEEEEeCCCCceeeCChHHHHHHHHHcCCCHHHHHHhhccceeeecCceEEecCChhhhHHHHHHHHHHH
Q 004543            1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI   80 (745)
Q Consensus         1 ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~Lt~~~~~~~~e~i~~~l~~~qA~~~rdaLak~L   80 (745)
                      |||||||||||+|..+. ++.+.+.+++.++.+|+|||||+..|.++|+.|.|++|+|.|.+++|..||...||+|||+|
T Consensus       326 iLAaILhiGNIef~~~r-~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~l  404 (1463)
T COG5022         326 ILAAILHIGNIEFKEDR-NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKAL  404 (1463)
T ss_pred             HHHHHHhhcceeeeecc-cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHH
Confidence            69999999999998654 45778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccceeeeeecccccccCcCchhhhHhhhhhhhHHHHHHHhhhhhhHHHhhhcCCcccc
Q 004543           81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK  160 (745)
Q Consensus        81 Y~~LF~wlV~~iN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQlcINyaNE~Lq~~f~~~~f~~eqeey~~EgI~w~~  160 (745)
                      |++||+|||++||.+|..+.. ..+|||||||||||+|++|||||||||||||||||+||+|||++|||||.+|||+|++
T Consensus       405 Y~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~  483 (1463)
T COG5022         405 YSNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSF  483 (1463)
T ss_pred             HHHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            999999999999999997644 5689999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcHhHHHhhhc-CCCcccccchhhcCCCCCCcHHHHHHHHHHcC--CCCCccCCC--CCceEEEeccceeEEeccc
Q 004543          161 VDFEDNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTG  235 (745)
Q Consensus       161 i~~~dn~~~ldLie~-kp~Gil~lLdee~~~p~~td~~f~~kl~~~~~--~~~~~~~~~--~~~F~I~HyaG~V~Y~~~g  235 (745)
                      |+|.||++||||||+ .|.|||++|||||.+|.|||++|..||.+.+.  +++.|..+|  +..|+|+||||+|.|++.|
T Consensus       484 Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg  563 (1463)
T COG5022         484 IDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEG  563 (1463)
T ss_pred             cccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccc
Confidence            999999999999997 48899999999999999999999999999876  567788765  5689999999999999999


Q ss_pred             hhhhhcccccHHHHHHHhhcCCchh-HHhhhcccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCee
Q 004543          236 FLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHF  314 (745)
Q Consensus       236 fleKN~D~l~~~~~~ll~~S~~~~~-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~~L~~Lm~~L~~t~~hf  314 (745)
                      |++||+|+++.++++||..|+++++ .+|....... .             .+.++|++++|+.||+.||++|++|+|||
T Consensus       564 ~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~-~-------------K~~~pT~gs~~K~sl~~Lm~tl~sTqphy  629 (1463)
T COG5022         564 FLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE-S-------------KGRFPTLGSRFKESLNSLMSTLNSTQPHY  629 (1463)
T ss_pred             hhhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc-c-------------cCCCCcHHHHHHHHHHHHHHHHHhcCCce
Confidence            9999999999999999999999864 7887332111 1             13569999999999999999999999999


Q ss_pred             eeecCCCCCCCCCCcchHHHHHHHhhcCccceeeeeecCCCCccchhhHHHhhccccccccCC------CChHHHHHHHH
Q 004543          315 IRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAIL  388 (745)
Q Consensus       315 IrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~------~d~~~~~~~ll  388 (745)
                      |||||||..|+|+.||..+|++|||||||+|+|||+|+|||.|++|+||+.||++|.|...-.      .|.+.+|..||
T Consensus       630 IRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL  709 (1463)
T COG5022         630 IRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSIL  709 (1463)
T ss_pred             eEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999964421      26789999999


Q ss_pred             HHcCcCCcceeeccccccccccccccccccccccch-hhhhhhhhhhccccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004543          389 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYAL  467 (745)
Q Consensus       389 ~~~~~~~~~y~vG~tkVFlr~g~l~~Le~~r~~~l~-aa~~IQ~~~Rg~~~R~~~~~~r~a~i~iQs~~Rg~~aRr~~~~  467 (745)
                      ....+|+..||+|.|||||+.|+++.||++|...+. .++.||+.|||+..|++|....+.+..+|...+|+..|+....
T Consensus       710 ~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~  789 (1463)
T COG5022         710 EELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY  789 (1463)
T ss_pred             HhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc
Confidence            999999999999999999999999999999999887 5678999999999999999999999999999999999877654


Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 004543          468 VLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ-SVIRGWLVRR  512 (745)
Q Consensus       468 ~~~~~~Aa~~IQ~~~R~~~~R~~~~~~~~a~i~IQ-s~~R~~~aRr  512 (745)
                      -. ..++++.||+.|+....|..|+.....++.+| ..++....+-
T Consensus       790 ~~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~  834 (1463)
T COG5022         790 EL-KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE  834 (1463)
T ss_pred             ch-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            33 44689999999999999999998888888888 6666555554

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query745
2dfs_A1080 3-D Structure Of Myosin-V Inhibited State Length = 1e-109
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 1e-95
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 7e-93
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 1e-85
1g8x_A1010 Structure Of A Genetically Engineered Molecular Mot 3e-85
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-85
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 7e-85
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 8e-85
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 8e-85
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 1e-84
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 1e-84
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 1e-84
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 1e-84
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 2e-84
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 2e-84
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 2e-84
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 4e-84
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 4e-84
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 5e-84
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 5e-84
2y0r_X758 Structural Basis For The Allosteric Interference Of 6e-84
2y9e_X758 Structural Basis For The Allosteric Interference Of 2e-83
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 3e-83
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 3e-83
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 4e-83
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 4e-83
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 4e-83
1b7t_A835 Myosin Digested By Papain Length = 835 4e-83
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 5e-83
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 1e-82
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 2e-82
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 5e-82
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 2e-79
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 8e-78
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 1e-77
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 8e-76
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 8e-76
3dtp_A971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 9e-75
3dtp_B973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 1e-74
1i84_S1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 2e-74
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 3e-74
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 3e-73
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 7e-72
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 2e-71
2ycu_A995 Crystal Structure Of Human Non Muscle Myosin 2c In 3e-71
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 1e-70
2bki_A858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 6e-64
3l9i_A814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 8e-64
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 8e-64
4dbp_A814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 9e-64
2bkh_A814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 9e-64
2vas_A788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 9e-64
2x51_A789 M6 Delta Insert1 Length = 789 1e-63
4dbq_A788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 1e-63
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 1e-63
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 1e-63
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 1e-63
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 1e-63
4anj_A1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 2e-63
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 2e-63
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure 
Iteration: 1

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 316/531 (59%), Gaps = 23/531 (4%)
Query: 1   MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
           +LA +L LGNV F   D+++   P   + L     L+G D  E+   L  RK+    +T 
Sbjct: 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETY 387
Query: 61  VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
           ++ ++   A + RDALAK IYA LF W+V+ +NK+L    ++    I +LDIYGFE+F+ 
Sbjct: 388 IKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHS-FIGVLDIYGFETFEI 446
Query: 121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
           NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W  +DF DN+ C+NL E K +G+
Sbjct: 447 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGV 505
Query: 181 LSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFL 237
           L LLDEE   P G+D T+A KL   HLN    F   R  +K+F + H+A +V Y   GFL
Sbjct: 506 LDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL 565
Query: 238 EKNRDLLHLDSIELLSSCSCH--LPQIF-------------ASNMLSQSNKPVVGPLYKA 282
           EKN+D ++ + I++L S      LP++F              S  +  S  PV     + 
Sbjct: 566 EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARP 625
Query: 283 G-GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCC 341
           G  +   K +V  +F+  L  LM+ L +TTPH++RCIKPN+F+ P  +++   +QQLR C
Sbjct: 626 GQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRAC 685
Query: 342 GVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVG 401
           GVLE +RIS +GFP+R ++Q+F  RY  L+ +     D       +L +  +  + YQ G
Sbjct: 686 GVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFG 745
Query: 402 YTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEK 460
            TK+FFRAGQ+  LE  R   L    +R+Q   RG   R     +RR  + +Q ++RG +
Sbjct: 746 KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQ 805
Query: 461 IRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVR 511
            R  YA  L+R RAA++IQ+  +  V R++ + ++ ++I +Q+++RG+LVR
Sbjct: 806 ARC-YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVR 855
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query745
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 0.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 0.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 0.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 0.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 0.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 0.0
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 0.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 0.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 0.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 3e-09
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 2e-07
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 5e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 8e-05
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
 Score =  712 bits (1839), Expect = 0.0
 Identities = 220/651 (33%), Positives = 346/651 (53%), Gaps = 48/651 (7%)

Query: 1   MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
           +LA +L LGNV F   D+++   P   + L     L+G D  E+   L  RK+    +T 
Sbjct: 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETY 387

Query: 61  VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
           ++ ++   A + RDALAK IYA LF W+V+ +NK+L    ++    I +LDIYGFE+F+ 
Sbjct: 388 IKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQH-SFIGVLDIYGFETFEI 446

Query: 121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
           NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W  +DF DN+ C+NL E   +G+
Sbjct: 447 NSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEA-KMGV 505

Query: 181 LSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER--DKSFTVSHYAGEVIYDTTGFL 237
           L LLDEE   P G+D T+A KL   HLN    F   R  +K+F + H+A +V Y   GFL
Sbjct: 506 LDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL 565

Query: 238 EKNRDLLHLDSIELLSSCSC--HLPQIFASNMLSQS--------------NKPVVGPLYK 281
           EKN+D ++ + I++L S      LP++F     + S                        
Sbjct: 566 EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARP 625

Query: 282 AGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCC 341
              +   K +V  +F+  L  LM+ L +TTPH++RCIKPN+F+ P  +++   +QQLR C
Sbjct: 626 GQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRAC 685

Query: 342 GVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVG 401
           GVLE +RIS +GFP+R ++Q+F  RY  L+ +     D       +L +  +  + YQ G
Sbjct: 686 GVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFG 745

Query: 402 YTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEK 460
            TK+FFRAGQ+  LE  R   L    +R+Q   RG   R     +RR  + +Q ++RG +
Sbjct: 746 KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQ 805

Query: 461 IRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVR--------- 511
            R      L+R RAA++IQ+  +  V R++ + ++ ++I +Q+++RG+LVR         
Sbjct: 806 ARCYATF-LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864

Query: 512 --------RCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDI 563
                      G +  +    +              +A+ + + LK EA   E+ ++  I
Sbjct: 865 HKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHI 924

Query: 564 --------LHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 606
                   L +++ +    +    +KM ++E  +  +   L+S +   + S
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 745
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-135
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-131
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 1e-131
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 1e-127
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-124
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 1e-123
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  417 bits (1072), Expect = e-135
 Identities = 177/480 (36%), Positives = 261/480 (54%), Gaps = 21/480 (4%)

Query: 1   MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 60
             A++L +G + F     E   E         VA L G + G+L  AL   K++VG + +
Sbjct: 303 CTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMV 362

Query: 61  VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR 120
            +   ++Q  ++  ALAKS+Y  +F WLV ++NK+L   K +    I +LDI GFE FD 
Sbjct: 363 TKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT-KAKRNYYIGVLDIAGFEIFDF 421

Query: 121 NSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGL 180
           NSFEQ CINY NERLQQ FN H+F LEQEEY ++GI W  +DF  +        +KP+G+
Sbjct: 422 NSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGI 481

Query: 181 LSLLDEESTFPNGTDLTFANKL-KQHLNSNPCF--------RGERDKSFTVSHYAGEVIY 231
           LS+L+EE  FP   D +F +KL + H+  N  F          +    F + HYAG V Y
Sbjct: 482 LSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPY 541

Query: 232 DTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLS 291
             TG+LEKN+D ++ + + LL +          + +     +P  G   K  G  S   +
Sbjct: 542 SITGWLEKNKDPINENVVALLGASKEP----LVAELFKAPEEPA-GGGKKKKGKSSAFQT 596

Query: 292 VATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISR 351
           ++   +  L +LM+ L ST PHF+RCI PN  + PGL +  LVL QL+C GVLE +RI R
Sbjct: 597 ISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICR 656

Query: 352 SGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRA 409
            GFP+R+ + +F +RY  L   ++     D  +VS  IL    + P  Y++G TK+FF+A
Sbjct: 657 KGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKA 716

Query: 410 GQIGMLEDTRNRTLHG-ILRVQSCFRGHQAR---LCLKELRRGIVALQSFIRGEKIRKEY 465
           G +G LE+ R+  L   I   Q+  RG+  R     L++ R G+  +Q  IR   + + +
Sbjct: 717 GVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 776
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query745
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 98.33
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 98.3
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 90.96
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=0  Score=912.40  Aligned_cols=463  Identities=39%  Similarity=0.640  Sum_probs=408.0

Q ss_pred             CHHHHHHHCCCEEEEECCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             92478866291899728988200079689999999709998989985613264555825885079554378899999999
Q 004543            1 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI   80 (745)
Q Consensus         1 ilAaIL~LGNi~F~~~~~~~~~~~~~~~~l~~~a~LLGv~~~~L~~aL~~~~~~~~~e~i~~~l~~~~A~~~rdaLak~L   80 (745)
                      |||||||||||+|...++++.+.+.+.+.+..+|.||||++++|..+|+++++.++++.+++++++++|.++||+|||+|
T Consensus       303 ilaaILhLGni~F~~~~~~~~~~~~~~~~~~~~a~LLgi~~~~L~~~l~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~l  382 (789)
T d1kk8a2         303 CTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSL  382 (789)
T ss_dssp             HHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHH
T ss_conf             88987510440354158754221488689999998849997774203167777606674433799899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999998100345798776620256313665446757234567421134677899996523227776422985322
Q 004543           81 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK  160 (745)
Q Consensus        81 Y~~LF~wiV~~IN~~L~~~~~~~~~~I~iLDi~GFE~f~~NsfEQlciNyanE~Lq~~f~~~~f~~eqeey~~EgI~~~~  160 (745)
                      |++||+|||.+||..|.+.. ....+||||||||||+|+.|||||||||||||+||++|++++|+.||++|.+|||+|..
T Consensus       383 Y~~LF~wIV~~IN~~L~~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~  461 (789)
T d1kk8a2         383 YDRMFNWLVRRVNKTLDTKA-KRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEF  461 (789)
T ss_dssp             HHHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999987664307777-76527887302542304768699999999999999999899999999999861778557


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCC-CCCCCCC--------CCCCEEEEECCCEEEE
Q ss_conf             445795758885312877522143000079999807899999877079-9986578--------9995389830420278
Q 004543          161 VDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNS-NPCFRGE--------RDKSFTVSHYAGEVIY  231 (745)
Q Consensus       161 i~~~dn~~~ldlie~k~~Gll~lLdee~~~p~~td~~f~~kl~~~~~~-~~~~~~~--------~~~~F~I~HyaG~V~Y  231 (745)
                      |+|.||..++++|.++|.|||++|||||.+|++||.+|++++++.+.+ ++.|..+        .+..|+|+||||+|.|
T Consensus       462 i~~~~n~~~~~~l~~~~~Gll~lLdee~~~~~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y  541 (789)
T d1kk8a2         462 IDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPY  541 (789)
T ss_dssp             CCCCHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEE
T ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf             87578889999987087447889876515788877899999998744777553588865554468884367516885452


Q ss_pred             ECCCHHHHHCCCCCHHHHHHHHHCCCCHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             042020430020309899999424882368-8651001259998668775679988787548999999999999997125
Q 004543          232 DTTGFLEKNRDLLHLDSIELLSSCSCHLPQ-IFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLEST  310 (745)
Q Consensus       232 ~~~gflekN~D~l~~~~~~ll~~S~~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~sL~~Lm~~L~~t  310 (745)
                      +++||++||+|.++++++++|++|+++++. +|.......+..      .+..+.....+||+++|+.||+.||++|++|
T Consensus       542 ~v~gfleKN~D~l~~~l~~ll~~S~n~~i~~lf~~~~~~~~~~------~~~~~~~~~~~Tv~~~Fr~sL~~L~~~L~~t  615 (789)
T d1kk8a2         542 SITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGG------KKKKGKSSAFQTISAVHRESLNKLMKNLYST  615 (789)
T ss_dssp             CCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC------------------------CCHHHHHHHHHHHHHHHHTTE
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             1457587603044599999999576599999852732234456------7778877775308999999999999987547


Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf             9824660378998998876627999997421954223233027887545435998650132345678--99289999998
Q 004543          311 TPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAIL  388 (745)
Q Consensus       311 ~~hfIrCIkPN~~~~p~~fd~~~V~~QLr~~gile~i~i~r~Gyp~r~~~~eF~~Ry~~L~~~~~~~--~d~~~~~~~ll  388 (745)
                      .||||||||||+.+.|+.||..+|++||+|+||+|++++++.|||+|++|.+|+.||++|++...+.  .|+++.|+.+|
T Consensus       616 ~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvle~vrirr~Gyp~R~~f~eF~~ry~~L~~~~~~~~~~~~k~~~~~il  695 (789)
T d1kk8a2         616 HPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKIL  695 (789)
T ss_dssp             EEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             97699942775546875658799999998626499999997578740549999999987683400156788899999999


Q ss_pred             HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87186986525202110000233442322223331006665545302310011011123466677777889999999988
Q 004543          389 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALV  468 (745)
Q Consensus       389 ~~~~~~~~~~~iG~tkVFlr~~~~~~Le~~r~~~l~aai~IQ~~~Rg~~~R~~~~~~r~a~i~IQs~~Rg~~aRr~~~~~  468 (745)
                      ..+++++.+|++|+|+||||.+.+..||..|.+.+.                      .+++.||++||||++|++|.++
T Consensus       696 ~~~~~~~~~~qiGkTkVFlr~~~~~~LE~~r~~~l~----------------------~~~~~IQ~~~R~~~~Rk~y~k~  753 (789)
T d1kk8a2         696 AGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS----------------------KIISMFQAHIRGYLIRKAYKKL  753 (789)
T ss_dssp             HHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHEEECCCEEEECHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             966988120884388799776199999999999999----------------------9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             667899999877566799999989
Q 004543          469 LQRHRAAVVIQRQIKSRVARQKLK  492 (745)
Q Consensus       469 ~~~~~Aa~~IQ~~~R~~~~R~~~~  492 (745)
                      +....|+++||+.||+|++|+.|.
T Consensus       754 r~~~~ai~~iQ~~~R~~~~rr~~~  777 (789)
T d1kk8a2         754 QDQRIGLSVIQRNIRKWLVLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             999999999999999999980369
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure