Citrus Sinensis ID: 004568
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJD4 | 720 | Long chain acyl-CoA synth | yes | no | 0.907 | 0.937 | 0.714 | 0.0 | |
| Q9CAP8 | 691 | Long chain acyl-CoA synth | no | no | 0.918 | 0.988 | 0.616 | 0.0 | |
| O95573 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.920 | 0.951 | 0.435 | 1e-166 | |
| Q5R668 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.920 | 0.951 | 0.434 | 1e-165 | |
| Q9CZW4 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.920 | 0.951 | 0.434 | 1e-165 | |
| Q63151 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.920 | 0.951 | 0.434 | 1e-164 | |
| O35547 | 670 | Long-chain-fatty-acid--Co | no | no | 0.866 | 0.962 | 0.437 | 1e-161 | |
| O60488 | 711 | Long-chain-fatty-acid--Co | no | no | 0.905 | 0.947 | 0.423 | 1e-161 | |
| Q9QUJ7 | 711 | Long-chain-fatty-acid--Co | no | no | 0.905 | 0.947 | 0.427 | 1e-161 | |
| O60135 | 676 | Long-chain-fatty-acid--Co | yes | no | 0.852 | 0.937 | 0.329 | 3e-97 |
| >sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/698 (71%), Positives = 590/698 (84%), Gaps = 23/698 (3%)
Query: 46 KKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRK 105
KK K+RGVP++VGGE GY +R+A+ PELV+VPW+GA+TM ALFEQSCK + +DR LG R+
Sbjct: 45 KKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTRE 104
Query: 106 LLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165
+ K+F+TASDGRKFEKLHLG+Y+WQ+YGEVF+R C+FASGLVN GHNVD R AI ++T
Sbjct: 105 FIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDTR 164
Query: 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT 225
EWFIAFQGCFRQSITVVTIY+SLGE+ALI+SLNET+V+TLICDSKQLKKLSA+ SSLKT
Sbjct: 165 AEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKT 224
Query: 226 IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285
+KN+IY E DG + S + + TVSS SEVEKLG+++ V P LPS+NGVAVIM+TSG
Sbjct: 225 VKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSG 284
Query: 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
STGLPKGVMITHGN+VATAA + ++P ++D Y+AYLPLAHV EL AE ++ +G AI
Sbjct: 285 STGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAI 344
Query: 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF 405
GYGS +T+TDTS+K+KKGTKGDVS LKPT+M AVPAI DRVREGV+KKVEEKGG+ K LF
Sbjct: 345 GYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTLF 404
Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
+ YKRRLAAV+GSWFGAWGLE+MLWDA+VFK +RAVLGG IRFM+ GGAPLS DSQRFI
Sbjct: 405 DFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRFI 464
Query: 466 NICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525
NICMG+PIGQ YGLTETCAG+TFSEWDDP+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPM
Sbjct: 465 NICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKPM 524
Query: 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDI 585
PRGEIVVGG +VTAGYFNN KT EVYKVDE+G WFYTGDIG+ +PDGCLE+IDRKKDI
Sbjct: 525 PRGEIVVGGNSVTAGYFNNQEKTDEVYKVDEKGTRWFYTGDIGRFHPDGCLEVIDRKKDI 584
Query: 586 VKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKY 645
VKLQHGEY+SLGKVEAAL SS+YVDNIM+HADP ++YCVALVVPS ALEKWA EA +K+
Sbjct: 585 VKLQHGEYVSLGKVEAALGSSNYVDNIMVHADPINSYCVALVVPSRGALEKWAEEAGVKH 644
Query: 646 EDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAK 705
+ +ELC K EAV EVQQ+L+KA KAAKL+KFE+PAK
Sbjct: 645 SEFAELCEKGEAVKEVQQSLTKA-----------------------GKAAKLEKFELPAK 681
Query: 706 IKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
IKL+ EPWTPE+GLVTAALKIKREQ+K+KFKD+L LY
Sbjct: 682 IKLLSEPWTPESGLVTAALKIKREQIKSKFKDELSKLY 719
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/712 (61%), Positives = 549/712 (77%), Gaps = 29/712 (4%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQS 91
+++P+ L+ +V + KK K+RGV V+VGGEPGYAIRN + E V W+ ST+ LFE S
Sbjct: 8 VIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEIS 67
Query: 92 CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151
C +H FLG RKL+ ++ T+ DG+ FEKLHLGDYEW T+G+ + C FASGLV G
Sbjct: 68 CNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIG 127
Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
H + R AI A+T EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC SK
Sbjct: 128 HKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSK 187
Query: 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSL 271
+LKKL +S L+T+K VI ++ E S V+ SNW +SF++V+KLG+ +PVDP+
Sbjct: 188 ELKKLMDISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNF 241
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE 331
P VAVIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LE
Sbjct: 242 PLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILE 301
Query: 332 LAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
LAAES+M G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR+GV
Sbjct: 302 LAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVR 361
Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
KKV+ KGGL+K LF+ Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++
Sbjct: 362 KKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLL 421
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV
Sbjct: 422 SGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLV 481
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY 571
W EGGY TSDKPMPRGEIV+GG N+T GYF N KT EVYKVDE+GM WFYTGDIG+ +
Sbjct: 482 DWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFH 541
Query: 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSH 631
PDGCLEIIDRKKDIVKLQHGEY+SLGKVEAAL S YV+NIM+HAD F++YCVALVV S
Sbjct: 542 PDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVALVVASQ 601
Query: 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQV 691
+E WA + I + + ELC K +AV EV +L KA
Sbjct: 602 HTVEGWASKQGIDFANFEELCTKEQAVKEVYASLVKA----------------------- 638
Query: 692 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
AK ++L+KFEIPAKIKL+ PWTPE+GLVTAALK+KR+ ++ +F +DL LY
Sbjct: 639 AKQSRLEKFEIPAKIKLLASPWTPESGLVTAALKLKRDVIRREFSEDLTKLY 690
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 318/730 (43%), Positives = 438/730 (60%), Gaps = 45/730 (6%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ ++ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
+F +GL G T AI ET EW IA Q CF + +VT+Y++LG A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE G+ V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGI-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
VE LG ++ ++ S P + +AVIMYTSGSTGLPKGVMI+H NI+A + IP
Sbjct: 258 AVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPE 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD S+LKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L D+
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTPLCDS 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T SE D
Sbjct: 432 FVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG +VT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTKADFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + VDNI
Sbjct: 552 EDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
+A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEA----- 665
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK
Sbjct: 666 ------------------AISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKT 707
Query: 734 KFKDDLQMLY 743
++ D++ +Y
Sbjct: 708 HYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins). Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 317/730 (43%), Positives = 437/730 (59%), Gaps = 45/730 (6%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ ++ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
+F +GL G T AI ET EW IA Q CF + +VT+Y++LG A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE G+ V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGI-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
VE LG ++ ++ S P + +AVIMYTSGSTGLPKGVMI+H NI+A + IP
Sbjct: 258 AVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPE 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD S+LKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L ++
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTPLCNS 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T SE D
Sbjct: 432 FVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG VT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTKADFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + VDNI
Sbjct: 552 EDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
+A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEA----- 665
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
A +A L+KFEIP KI+L PEPWTPE GLVT A K+KR++LK
Sbjct: 666 ------------------AISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKT 707
Query: 734 KFKDDLQMLY 743
++ D++ +Y
Sbjct: 708 HYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 317/730 (43%), Positives = 434/730 (59%), Gaps = 45/730 (6%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ I+ + IP ++K + + PV + Y N+ + L V + G
Sbjct: 26 IHFIISLYTILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINS-VDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
F +GL G AI ET EW IA Q CF + +VT+Y++LG A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE GV V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
V+ LG ++ V+ S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ + IP
Sbjct: 258 AVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L D
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T +E D
Sbjct: 432 FVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
+A+ +H+Y + VVP+ K L + A K ELCN +E NEV + LS+A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARTKGFK-GTWEELCNSSEMENEVLKVLSEA----- 665
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK
Sbjct: 666 ------------------AISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKT 707
Query: 734 KFKDDLQMLY 743
++ D++ +Y
Sbjct: 708 HYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1495), Expect = e-164, Method: Compositional matrix adjust.
Identities = 317/730 (43%), Positives = 432/730 (59%), Gaps = 45/730 (6%)
Query: 21 IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
I+ I+ + IP ++K + PV + Y N+ + L V + G
Sbjct: 26 IHFIISLYTILTYIPFYFLCESKQEKPNHIKAKPVSSKPDSAYRSVNS-MDGLASVLYPG 84
Query: 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85 CDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRA 144
Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
F +GL G AI ET EW IA Q CF + +VT+Y++LG A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204
Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
T+VT +I + L+ KL + S + ++++I + SE GV V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257
Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
V+ LG ++ VD S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ + IP
Sbjct: 258 AVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
TLMAAVP I DR+ + V+ KV E +NLF + Y ++ + + G L D
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T +E D
Sbjct: 432 FVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
+ GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT +
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKADFF 551
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI
Sbjct: 552 EDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNIC 611
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
+A+ +H+Y + VVP+ K L + A ELCN +E NEV + LS+A
Sbjct: 612 AYANSYHSYVIGFVVPNQKELTELARTKGFN-GTWEELCNSSEMENEVLKVLSEA----- 665
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
A +A L+KFEIP KI+L P+PWTPE GLVT A K+KR++LK
Sbjct: 666 ------------------AISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKT 707
Query: 734 KFKDDLQMLY 743
++ D++ +Y
Sbjct: 708 HYQADIERMY 717
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1469), Expect = e-161, Method: Compositional matrix adjust.
Identities = 303/693 (43%), Positives = 420/693 (60%), Gaps = 48/693 (6%)
Query: 59 GEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGR 118
G P ++ + ++++P GA T+ LF+ + + LG R++L ++ +G+
Sbjct: 15 GSPYRSVTHFDSLAVIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72
Query: 119 KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
F+KL LG+Y+W Y EV R +F SGL G AI ET EW IA Q CF+
Sbjct: 73 VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132
Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGS 237
+ +VT+Y++LG++A++H LNE++ + LI + L+ KL A + +K++IY +N
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTI 192
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
+ G + S VE+LG + S + PS P+ + +A++MYTSGSTG PKGVM
Sbjct: 193 NRAEYPEG----LEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVM 248
Query: 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT 354
+ H N++A IP G D Y+ YLPLAHVLEL AE GC IGY S LT++
Sbjct: 249 MHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLS 308
Query: 355 DTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
D SSKIKKG+KGD +VLKPTLMAAVP I DR+ + V+ KV+E + K LF IGY +L
Sbjct: 309 DQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLE 368
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
++ G + L + I+FK V+A+LGG +R M+ GGAPLS + RF+N+C PIG
Sbjct: 369 QIKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIG 422
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
Q YGLTE+C T +E D + GRVG P+ CC IKL W EGGY DKP PRGEIV+GG
Sbjct: 423 QGYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGG 482
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
N++ GYF N KT+E Y VDE G WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+
Sbjct: 483 QNISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYV 542
Query: 595 SLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCN- 653
SLGKVEAAL + +DNI A +Y ++ VVP+ K L A + ++ ++CN
Sbjct: 543 SLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVE-GSWVDICNN 601
Query: 654 ---KAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710
+AE + E+++A A A KL++FEIP K++L P
Sbjct: 602 PAMEAEILKEIREA---------------------------ANAMKLERFEIPIKVRLSP 634
Query: 711 EPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
EPWTPE GLVT A K+KR++LK + D++ +Y
Sbjct: 635 EPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 305/721 (42%), Positives = 424/721 (58%), Gaps = 47/721 (6%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
+ IP +K + +R +PG R+ L + GA T+ LF+
Sbjct: 26 IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85
Query: 91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
+ + LG R++L ++ +G+ F+KL LG+Y+W Y EV R +F SGL
Sbjct: 86 AVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTAL 145
Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
G AI ET EW IA Q CF+ + +VT+Y++LG++A++H LNE++ + LI
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSV 205
Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
+ L+ KL + +K++IY +N K G + + S VE+LG
Sbjct: 206 ELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FEIHSMQSVEELGSNPENLG 261
Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
+ PS P+ + +A++MYTSGSTG PKGVM+ H N++A IP G D Y+ YLPL
Sbjct: 262 IPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321
Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
AHVLEL AE GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381
Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
+ V+ KV+E + K LF IGY +L ++ G + L + ++FK V+A+LGG
Sbjct: 382 YKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLFKKVKALLGGN 435
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
+R M+ GGAPLS + RF+N+C PIGQ YGLTE+C T +E D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
IKL W EGGY +DKP PRGEIV+GG N++ GYF N KT+E Y VDE G WF TGD
Sbjct: 496 EIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSVDENGQRWFCTGD 555
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVAL 626
IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI A +Y ++
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISF 615
Query: 627 VVPSHKALEKWAHEASIKYEDLSELCN----KAEAVNEVQQALSKASTLVSRTEFFLSRR 682
VVP+ K L A + ++ ++CN +AE + E+++A
Sbjct: 616 VVPNQKRLTLLAQQKGVE-GTWVDICNNPAMEAEILKEIREA------------------ 656
Query: 683 YKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQML 742
A A KL++FEIP K++L PEPWTPE GLVT A K+KR++L+ + D++ +
Sbjct: 657 ---------ANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERM 707
Query: 743 Y 743
Y
Sbjct: 708 Y 708
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 308/721 (42%), Positives = 423/721 (58%), Gaps = 47/721 (6%)
Query: 32 LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
+ IP +K + +R +PG R+ L + GA T+ LF+
Sbjct: 26 IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85
Query: 91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
+ + LG R++L ++ +G+ F+KL LG+Y+W Y EV R +F SGL
Sbjct: 86 AVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGSGLTAL 145
Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
G AI ET EW IA Q CF+ + +VT+Y++LG +A++H LNE++ + LI
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSV 205
Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS---P 266
+ L+ KL A + +K++IY +N + G + S VE+LG +
Sbjct: 206 ELLESKLKAALVDINCVKHIIYVDNKTINRAEYPEG----LEIHSMQSVEELGAKPENLS 261
Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
V PS P+ + +A++MYTSGSTG PKGVM+ H N++A IP G D Y+ YLPL
Sbjct: 262 VPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321
Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
AHVLEL AE GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381
Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
+ V+ KV+E + K LF IGY +L ++ G + L + I+FK V+A+LGG
Sbjct: 382 YKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFKKVKALLGGN 435
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
+R M+ GGAPLS + RF+N+C PIGQ YGLTE+C T +E D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
IKL W EGGY DKP PRGEIV+GG N++ GYF N KT+E Y VDE G WF TGD
Sbjct: 496 EIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVDENGQRWFCTGD 555
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVAL 626
IG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL + +DNI A +Y ++
Sbjct: 556 IGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISF 615
Query: 627 VVPSHKALEKWAHEASIKYEDLSELCN----KAEAVNEVQQALSKASTLVSRTEFFLSRR 682
VVP+ K L A + ++ ++CN +AE + E+++A
Sbjct: 616 VVPNQKKLTLLAQQKGVE-GSWVDICNNPAMEAEILKEIREA------------------ 656
Query: 683 YKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQML 742
A A KL++FEIP K++L PEPWTPE GLVT A K+KR++LK + D++ +
Sbjct: 657 ---------ANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERM 707
Query: 743 Y 743
Y
Sbjct: 708 Y 708
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 230/699 (32%), Positives = 361/699 (51%), Gaps = 65/699 (9%)
Query: 66 RNAQIPE-LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVT-----ASDGRK 119
RNA P+ LVE T+ +F S K + +G R L+ + T DG K
Sbjct: 20 RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKMVTKVVDGEK 79
Query: 120 FE------KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ 173
E L DY + ++ +++D+A +A L G N + + A T W + +
Sbjct: 80 KEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAE 139
Query: 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233
C QS+T+VT Y +LGE+ L+HSL E+ V + + LK L +++++ +IY
Sbjct: 140 ACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIY-R 198
Query: 234 NDGSEKDSGVSGGIS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKG 292
ND E+D I N + F++ EK+ PS + IMYTSGSTGLPKG
Sbjct: 199 NDAKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEP--DPPSPEEICCIMYTSGSTGLPKG 256
Query: 293 VMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
V+++H N+VA AI +P D LAYLPLAH+LE A E+I L G IGY + T
Sbjct: 257 VILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWGGTIGYANVRT 316
Query: 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR 412
+ DT+ + KGD++ +PT+M VPA+++ VR+G++ K+ + +++F Y +
Sbjct: 317 LVDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTK 373
Query: 413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAV-LGGRIRFMICGGAPLSADSQRFINICMGA 471
+ + G+ L D VF +R++ GGR+R+ + GG+ LS D++RF++I +
Sbjct: 374 AKLMRHNLPGSCVL-----DTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-C 427
Query: 472 PIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
P+ YGLTE A + DD + G +PC +KLV +EG Y + P P
Sbjct: 428 PMLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-P 482
Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
RGEI + G ++T GY N + E + D WF TGD+G++ P+G L IIDRKK++V
Sbjct: 483 RGEIWLRGPSLTRGYLNRDKENKESFTPD----GWFRTGDVGELTPEGLLRIIDRKKNLV 538
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYE 646
K Q+GEYI+L K+E+ +S V NI ++AD +A++VP+ + K A E +
Sbjct: 539 KTQNGEYIALEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSP 598
Query: 647 DLS--ELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPA 704
D S E+C+ + V L +++ ++ E+
Sbjct: 599 DASWEEVCHNKKVRQLVYDDL-----------------------IRIGRSHHFANIELIQ 635
Query: 705 KIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
+ L+P +TPE GLVTAA K++R ++ +FK ++ Y
Sbjct: 636 NVVLVPIEFTPENGLVTAAQKLQRRKILDRFKKEIDAAY 674
|
Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | ||||||
| 255582880 | 730 | long-chain-fatty-acid CoA ligase, putati | 0.948 | 0.967 | 0.748 | 0.0 | |
| 224131896 | 679 | predicted protein [Populus trichocarpa] | 0.907 | 0.994 | 0.750 | 0.0 | |
| 225447498 | 719 | PREDICTED: long chain acyl-CoA synthetas | 0.920 | 0.952 | 0.730 | 0.0 | |
| 193290712 | 726 | putative long-chain acyl-CoA synthetase | 0.943 | 0.966 | 0.712 | 0.0 | |
| 356577566 | 725 | PREDICTED: long chain acyl-CoA synthetas | 0.951 | 0.976 | 0.716 | 0.0 | |
| 356547579 | 725 | PREDICTED: long chain acyl-CoA synthetas | 0.951 | 0.976 | 0.710 | 0.0 | |
| 317373793 | 711 | long-chain acyl-CoA synthetase 2 [Helian | 0.934 | 0.977 | 0.704 | 0.0 | |
| 449453754 | 732 | PREDICTED: long chain acyl-CoA synthetas | 0.951 | 0.967 | 0.693 | 0.0 | |
| 449511787 | 732 | PREDICTED: long chain acyl-CoA synthetas | 0.951 | 0.967 | 0.693 | 0.0 | |
| 357462487 | 727 | Annotation was added to scaffolds in Nov | 0.946 | 0.968 | 0.702 | 0.0 |
| >gi|255582880|ref|XP_002532212.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223528108|gb|EEF30181.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1143 bits (2957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/736 (74%), Positives = 630/736 (85%), Gaps = 30/736 (4%)
Query: 12 ELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQ-RGVPVEVGGEPGYAIRNAQI 70
+L EKG G YGI+GAAIVA+ +PVLLS++ +KKVK+ RGVPVEVGGE GYAIRNA+
Sbjct: 22 QLSVEKGYGTYGILGAAIVAIFLPVLLSIVFLGRKKVKKVRGVPVEVGGEAGYAIRNART 81
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDG--RKFEKLHLGDY 128
P L+EVPW+GA+TMAALFEQSCK H Q RFLG RKL+ ++F+TASDG RKFEKLHLGDY
Sbjct: 82 PGLIEVPWEGATTMAALFEQSCKKHSQYRFLGTRKLVSREFITASDGSGRKFEKLHLGDY 141
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
EWQTYG+VFDRAC+FASGL+ HN D RAAI +ET EW IA QGC RQ+I+VVTIYSS
Sbjct: 142 EWQTYGQVFDRACNFASGLIRLEHNEDARAAIFSETREEWLIALQGCMRQNISVVTIYSS 201
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
LG+DAL+HSLNET+V TLICDSKQLKKL+A+SS L TIKNVIYFE++GS + +S
Sbjct: 202 LGDDALVHSLNETEVQTLICDSKQLKKLAAISSRLTTIKNVIYFEDEGS----AMPQSMS 257
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
NWTVSSF EVEK+GK +P+ PSLPS++G+AVIMYTSGSTGLPKGVMITHGNI+AT AA+
Sbjct: 258 NWTVSSFPEVEKMGKTNPLLPSLPSKDGIAVIMYTSGSTGLPKGVMITHGNIIATIAAVM 317
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
T IP G +DVYLAYLPLAHVLELAAES+ML AGCAIGYGS LT+TDT++KIKKGTKGD
Sbjct: 318 TTIPKLGTNDVYLAYLPLAHVLELAAESVMLTAGCAIGYGSALTLTDTANKIKKGTKGDA 377
Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
S+LKPTLMAAVP I DRVREGV KKV+EKGGL K LF+IGYKRR AA+EGSWFGAWGLER
Sbjct: 378 SMLKPTLMAAVPTILDRVREGVQKKVDEKGGLAKKLFDIGYKRRQAAIEGSWFGAWGLER 437
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
+LWDAIVF+++RA LGG IRFM+CGGAPLS DSQRFINICMGA IGQAYGLTETCAG+ F
Sbjct: 438 VLWDAIVFRTIRAGLGGHIRFMLCGGAPLSGDSQRFINICMGAIIGQAYGLTETCAGAAF 497
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
S+WDD SVGRVGPPVPCCYIKLVSW+EGGY+ SDKPMPRGEIVVGGF+VT+GYF + KT
Sbjct: 498 SDWDDTSVGRVGPPVPCCYIKLVSWEEGGYRISDKPMPRGEIVVGGFSVTSGYFKSHEKT 557
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS Y
Sbjct: 558 NEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSGY 617
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKA 668
VDNIM++ADP NYCVALVVPSH+ALEKWA I+Y++ SELCNK E++ EVQQ+L
Sbjct: 618 VDNIMLYADPLKNYCVALVVPSHQALEKWAQGVGIEYQNFSELCNKDESITEVQQSL--- 674
Query: 669 STLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKR 728
L+V KAAKLDKFEIPAKIKL+P+PWTPE+GLVTAALKIKR
Sbjct: 675 --------------------LKVGKAAKLDKFEIPAKIKLLPDPWTPESGLVTAALKIKR 714
Query: 729 EQLKAKFKDDLQMLYQ 744
EQLK+KFK++LQ LY+
Sbjct: 715 EQLKSKFKEELQKLYE 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131896|ref|XP_002321205.1| predicted protein [Populus trichocarpa] gi|222861978|gb|EEE99520.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/698 (75%), Positives = 597/698 (85%), Gaps = 23/698 (3%)
Query: 45 KKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKR 104
KKKVKQRGVPVEVGGE GYA+RNA+ ELVEVPWKGA+TMAALFEQSC+ H +RFLG R
Sbjct: 3 KKKVKQRGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQSCRKHSPERFLGTR 62
Query: 105 KLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164
KL+ K+FVTASDGRKFEKLHLGDYEWQTYG+VFDR C+FASGL+ GHN D RAAI A+T
Sbjct: 63 KLISKEFVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDARAAIFADT 122
Query: 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK 224
EW IAFQGCFRQ+ITVVT+Y+SLG DALIHSLNETQV+TLICD KQLK L+A+SS +
Sbjct: 123 RAEWLIAFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKIT 182
Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
TIKNVIYFE+ + D G+S S W VSSFSEVE+LGK S V PSLP++NG+AV+MYTS
Sbjct: 183 TIKNVIYFEDGETTNDLGLSASTSYWKVSSFSEVEELGKNSHVPPSLPTKNGIAVVMYTS 242
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCA 344
GSTG PKGVMITHGNIVATAAA+ T+IP +DVYLAYLPLAHV ELAAES+ML GCA
Sbjct: 243 GSTGQPKGVMITHGNIVATAAAVMTVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCA 302
Query: 345 IGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
IGYGS LT+TDTS+KIKKGTKGD S+L PTLM AVPAI DRVR+GV+KKVEEKGGL K L
Sbjct: 303 IGYGSALTLTDTSNKIKKGTKGDASMLNPTLMLAVPAILDRVRDGVLKKVEEKGGLAKKL 362
Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
FNIG KRR+AA+EGSWFG LERMLWD I FK +RA+LG R++F++CGGAPLS DSQRF
Sbjct: 363 FNIGCKRRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQFILCGGAPLSGDSQRF 422
Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
NICMGA IGQAYGLTETCAG+ ++EWDDPSVGRVGPP+PCCY+KLVSW+EGGY +DKP
Sbjct: 423 TNICMGAIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKP 482
Query: 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
MPRGE+VVGGF+VTAGYFN KT+EVYKVDERGM WFYTGDIGQ +PDGCLEIIDRKKD
Sbjct: 483 MPRGEVVVGGFSVTAGYFNYQEKTNEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKD 542
Query: 585 IVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIK 644
IVKLQHGEYISLGKVEAAL SSDYVDNIM+HA+PFHNYCVAL+VPSH+ LEKWA EA I+
Sbjct: 543 IVKLQHGEYISLGKVEAALTSSDYVDNIMVHANPFHNYCVALIVPSHRILEKWAQEAGIQ 602
Query: 645 YEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPA 704
+++ SELCN+A+AV+EV+Q+LSK VAKA +LDKFE PA
Sbjct: 603 HQNFSELCNEADAVSEVEQSLSK-----------------------VAKALRLDKFETPA 639
Query: 705 KIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQML 742
KIKL+P+PWTPE+GLVTAALKIKREQLK+KFKD+LQ L
Sbjct: 640 KIKLLPDPWTPESGLVTAALKIKREQLKSKFKDELQKL 677
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447498|ref|XP_002267417.1| PREDICTED: long chain acyl-CoA synthetase 8 [Vitis vinifera] gi|296085053|emb|CBI28468.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/710 (73%), Positives = 604/710 (85%), Gaps = 25/710 (3%)
Query: 35 PVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKS 94
P+L S+++ KKKVKQRGVPVEVG E G+A+RN++ ELVEVPW+GA+T+AALFEQSC
Sbjct: 32 PLLFSIILVGKKKVKQRGVPVEVGDELGFAMRNSRYTELVEVPWEGATTIAALFEQSCGK 91
Query: 95 HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154
H +D FLG RKL+ ++F+TA DGRKFEK+HLG+Y+W+TY E+F+RAC+FASGL+ GHNV
Sbjct: 92 HSRDPFLGTRKLINREFITAGDGRKFEKVHLGEYQWETYEEIFNRACNFASGLIKLGHNV 151
Query: 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK 214
D+ AI ++T EW IAFQGCFRQ+IT+VTIY+SLGEDALIHSLNETQ++TLICDSKQLK
Sbjct: 152 DSHVAIFSDTQAEWLIAFQGCFRQNITIVTIYASLGEDALIHSLNETQISTLICDSKQLK 211
Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
KL+++SS L+ IKNVIYF+N S DS SG +SNWTVS+FSEVEKLGK +PV P LPS+
Sbjct: 212 KLASISSRLEMIKNVIYFDNAAS--DSDFSGDMSNWTVSTFSEVEKLGKENPVHPRLPSK 269
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
+AV+MYTSGSTGLPKGVM+THGNIVATAAA+ T+IP G D+YLAYLPLAHV ELAA
Sbjct: 270 TDIAVVMYTSGSTGLPKGVMMTHGNIVATAAAVMTVIPELGSKDIYLAYLPLAHVFELAA 329
Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
E++M+ AGCAIGYGS LT+TDTS+KI+KGTKGD S+LKPTLMA VPAI DRVR+GV+K+V
Sbjct: 330 ETVMMAAGCAIGYGSALTLTDTSNKIQKGTKGDASMLKPTLMATVPAILDRVRDGVLKQV 389
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
E KGGL K LFNIGYKRRLAAVEGS FGAWGLER+ WDAIVFK +R++LGG IRFM+CGG
Sbjct: 390 EAKGGLVKKLFNIGYKRRLAAVEGSCFGAWGLERVFWDAIVFKKIRSLLGGHIRFMLCGG 449
Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
APLS D+QRFINICMGAPIGQ YGLTETCAG+TF+E DDP+VG VGPP+PC YIKLVSW+
Sbjct: 450 APLSGDTQRFINICMGAPIGQGYGLTETCAGATFTEPDDPNVGHVGPPLPCAYIKLVSWE 509
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
EGGYKTSDKPMPRGE+VVGG+++TAGYFNN KT E YKVDERGM WFYTGDIGQ P+G
Sbjct: 510 EGGYKTSDKPMPRGEVVVGGYSITAGYFNNEEKTKEAYKVDERGMRWFYTGDIGQFQPNG 569
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKAL 634
CLEIIDRKKDIVKLQHGEYISLGKVEAAL+ S+YVDNIM++ADP HNYCVALVVPSH+ L
Sbjct: 570 CLEIIDRKKDIVKLQHGEYISLGKVEAALMGSNYVDNIMVYADPLHNYCVALVVPSHQVL 629
Query: 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKA 694
EKWA A IKY+D SELCNK E V EVQQ+LSK VAKA
Sbjct: 630 EKWAEAAGIKYKDFSELCNKEETVGEVQQSLSK-----------------------VAKA 666
Query: 695 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744
AKLDKFE PAKIKL+ E WTPE+GLVTAALK+KREQ+K KFKDDL LY+
Sbjct: 667 AKLDKFETPAKIKLVAEQWTPESGLVTAALKLKREQIKTKFKDDLVKLYE 716
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|193290712|gb|ACF17664.1| putative long-chain acyl-CoA synthetase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/728 (71%), Positives = 617/728 (84%), Gaps = 26/728 (3%)
Query: 17 KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
K G G+ GA +A+++P++LSM++ KKK KQRGVPV+VGGE G A+RN + LVEV
Sbjct: 25 KNYGSSGVTGAVFIAIIMPIILSMLLMGKKKAKQRGVPVQVGGEAGLAMRNVKSARLVEV 84
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
PW+GA+T+ ALFEQSCK H DR LG RKL+ +DFVTASDGRKFEKLHLG+Y+W++YG+V
Sbjct: 85 PWEGATTVPALFEQSCKKHSSDRCLGTRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQV 144
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
FDR C+FASGL+ FGH+VDT AAI AET EW IAFQGCFRQ+ITVVTIY+SLG+DALIH
Sbjct: 145 FDRTCNFASGLIKFGHDVDTHAAICAETRPEWIIAFQGCFRQNITVVTIYASLGDDALIH 204
Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
SLNETQV+TLICD+KQLKK+++VSSSLKTIKNVIYFE+D + DS I +W +SSFS
Sbjct: 205 SLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETAIDST---NIDSWRMSSFS 261
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
VEKLGK SP+ P LP + +AVIMYTSGSTGLPKGVMITHGNIVAT+AA+ T+IPN G
Sbjct: 262 AVEKLGKNSPIQPRLPIKEDIAVIMYTSGSTGLPKGVMITHGNIVATSAAVMTVIPNLGS 321
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
SDVYLAYLPLAHV ELAAE++ML AG IGYGS LT+TDTS+K+ KGTKGD +VLKPTLM
Sbjct: 322 SDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLM 381
Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
AAVPAI DRVR+GV+KKVEEK G K LF+IG+ RRLAA+EGSWFGAWGLE+ LWD I+F
Sbjct: 382 AAVPAILDRVRDGVMKKVEEKAGSAKKLFHIGFNRRLAAMEGSWFGAWGLEKQLWDIIIF 441
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
K VRAVLGG IRFM+CGGAPLS D+QRFINICMGAPIGQ YGLTET AG+TFSEWDDPSV
Sbjct: 442 KKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGATFSEWDDPSV 501
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
GRVGPP+PC YIKLV+W+EGGY+ DKPMPRGE+VVGG ++TAGYFNN KT+EVYKVDE
Sbjct: 502 GRVGPPLPCSYIKLVTWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEDKTNEVYKVDE 561
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
RGM WFYTGDIG+ +PDGC+EIIDRKKDI+KLQHGEYISLGKVEAAL+SSDYV++IM++A
Sbjct: 562 RGMRWFYTGDIGRFHPDGCIEIIDRKKDIIKLQHGEYISLGKVEAALLSSDYVESIMVYA 621
Query: 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTE 676
DPFH+YCVALVVPS + LEKW+ E SI+++D SELC+KAE+VNE++Q++SK
Sbjct: 622 DPFHSYCVALVVPSRQVLEKWSQENSIQHKDFSELCDKAESVNEIKQSISK--------- 672
Query: 677 FFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736
VAKAA+L+KFE+PAKI L+PE WTPE GLVTAALK+KRE LKA++K
Sbjct: 673 --------------VAKAARLEKFELPAKINLIPESWTPETGLVTAALKLKREPLKARYK 718
Query: 737 DDLQMLYQ 744
++L+ LYQ
Sbjct: 719 NELEKLYQ 726
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577566|ref|XP_003556895.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/733 (71%), Positives = 608/733 (82%), Gaps = 25/733 (3%)
Query: 11 SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
S++ K G YG + A ++++L+PVL S + KKK K RGVPVEVGGE +A+RNA+
Sbjct: 17 SDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
ELVEVPWKGA TMA LFEQSC + +RFLG RKL+ K+ VT+SDGRKFEKLHLGDYEW
Sbjct: 77 TELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEW 136
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+TYGEVF R +FASGL+ GHN D+R AI ++T EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
EDALIHSLNET+V+TLICDSKQLKKL A+ S L +++N+IYFE+D E SG S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEE--DAFSGSSSGW 254
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
IPN G DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+ YKRRLAAV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLM 434
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
WD IVFK +R+ LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
WDD SVGRVGPP+PCCYIKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N KT+E
Sbjct: 495 WDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNE 554
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL S DYVD
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALSSCDYVD 614
Query: 611 NIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKAST 670
NIM++ADPFHNYCVALVV S ++LEKWA +A I Y+D +LCNK E V EV Q++SK
Sbjct: 615 NIMVYADPFHNYCVALVVASQQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISK--- 671
Query: 671 LVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQ 730
VAK+AKL+K EIPAKIKL+P+PWTPE+GLVTAALKIKREQ
Sbjct: 672 --------------------VAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQ 711
Query: 731 LKAKFKDDLQMLY 743
LKAKFKDDLQ LY
Sbjct: 712 LKAKFKDDLQKLY 724
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547579|ref|XP_003542188.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/733 (71%), Positives = 608/733 (82%), Gaps = 25/733 (3%)
Query: 11 SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
S++ KG G YG + A ++++L+PVL S + KKK K RGVPVEVGGE +A+RNA+
Sbjct: 17 SDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76
Query: 71 PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
ELVEVPWKGA TMA LFEQSC + +++FLG RK++ K+FVT+SDGRKFEKLHLGDYEW
Sbjct: 77 TELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEW 136
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+TYGEVF R +FASGL+ GHN D+R AI ++T EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
EDALIHSLNET+V+TLICDSKQ KKL A+ S L +++NVIYFE+D E SG S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEE--DAFSGSSSGW 254
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
IPN G DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+ YKRRL AV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLM 434
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
WD IVFK +R LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
WDD SVGRVGPP+PCC+IKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N KT E
Sbjct: 495 WDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKE 554
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V+KVDE+GM WFYTGDIGQ +PDGCLEIIDRKKDIVKLQHGEYISLGK+EAAL S D+VD
Sbjct: 555 VFKVDEKGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKIEAALSSCDHVD 614
Query: 611 NIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKAST 670
NIM++ADPFHNYCVALVV SH++LEKWA +A I Y+D +LCNK E V EV Q++SK
Sbjct: 615 NIMVYADPFHNYCVALVVASHQSLEKWAQQAGIDYQDFPDLCNKPETVTEVLQSISK--- 671
Query: 671 LVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQ 730
VAK+AKL+K EIPAKIKL+P+PWTPE+GLVTAALKIKREQ
Sbjct: 672 --------------------VAKSAKLEKTEIPAKIKLLPDPWTPESGLVTAALKIKREQ 711
Query: 731 LKAKFKDDLQMLY 743
LKAKFKD+LQ LY
Sbjct: 712 LKAKFKDELQKLY 724
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317373793|gb|ADV16379.1| long-chain acyl-CoA synthetase 2 [Helianthus annuus] | Back alignment and taxonomy information |
|---|
Score = 1084 bits (2803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/722 (70%), Positives = 606/722 (83%), Gaps = 27/722 (3%)
Query: 22 YGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGA 81
YG A + A+ +P++LS M KKKVKQRGVPVEVGGEPG+ +RN + +LV+VPW+GA
Sbjct: 16 YGAAIAVLFAVAVPLVLSSMFVGKKKVKQRGVPVEVGGEPGFGMRNVRSKKLVDVPWEGA 75
Query: 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRAC 141
+TMAALFEQSCK H Q RFLG RKL+ + F+ S GRKFEKLHLG+YEW+T+G+VF+R C
Sbjct: 76 TTMAALFEQSCKKHSQHRFLGTRKLIERSFIDGSGGRKFEKLHLGEYEWETFGQVFERVC 135
Query: 142 SFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201
+FASGL+ GH+ DTR AI ++T EW IAF+GCFRQ+ITVVTIY+SLG+DALIHSLNET
Sbjct: 136 NFASGLIQLGHDPDTRIAIFSDTRAEWLIAFEGCFRQNITVVTIYASLGDDALIHSLNET 195
Query: 202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
+V+TLICDSK LKK+++VSSSL+T+ NVIYFE+D +E S I +W +SSFSEVEK+
Sbjct: 196 KVSTLICDSKLLKKVASVSSSLETVTNVIYFESDNTEALSK----IGDWQISSFSEVEKM 251
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321
G+ SPV LP + +AVIMYTSGSTGLPKGVM+THGN+VATAAA+ T+IP G SDVY+
Sbjct: 252 GRNSPVKARLPIKKDIAVIMYTSGSTGLPKGVMMTHGNVVATAAAVMTVIPGIGTSDVYM 311
Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
AYLPLAH+ ELAAE++M+ AG +IGYGS LT+TDTS+KIKKGT GD + LKPTLMA+VPA
Sbjct: 312 AYLPLAHIFELAAETVMITAGSSIGYGSALTLTDTSNKIKKGTMGDATALKPTLMASVPA 371
Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
I DRVR+GVVKKVEEKGGLT LFNI Y+RRL AV+GSW GAWGLE++LWDAIVFK +++
Sbjct: 372 ILDRVRDGVVKKVEEKGGLTTKLFNIAYQRRLLAVDGSWLGAWGLEKLLWDAIVFKKIQS 431
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501
VLGG++RFM+CGGAPL+AD+QRFIN+C+GAPIGQ YGLTETCAG+ FSE DD SVGRVGP
Sbjct: 432 VLGGKMRFMLCGGAPLAADTQRFINVCIGAPIGQGYGLTETCAGAAFSEADDNSVGRVGP 491
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
P+PC YIKLVSWDEGGY TSDKPMPRGE+VVGG++VTAGYFNN KT EV+KVDE GM W
Sbjct: 492 PLPCVYIKLVSWDEGGYLTSDKPMPRGEVVVGGYSVTAGYFNNEEKTKEVFKVDESGMRW 551
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621
FYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL SS YV+N+M+HADPFH+
Sbjct: 552 FYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALASSKYVENVMLHADPFHS 611
Query: 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSR 681
YCVALVVP H+ LE+WA A I Y+D ++LC+K E+V+EV Q+L+K
Sbjct: 612 YCVALVVPPHQVLEQWAQSAGISYKDFADLCDKKESVSEVLQSLNK-------------- 657
Query: 682 RYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQM 741
VAK AKLDKFEIPAKIKLMPEPWTPE+GLVTAALK+KREQLKAKFKDDLQM
Sbjct: 658 ---------VAKDAKLDKFEIPAKIKLMPEPWTPESGLVTAALKLKREQLKAKFKDDLQM 708
Query: 742 LY 743
LY
Sbjct: 709 LY 710
|
Source: Helianthus annuus Species: Helianthus annuus Genus: Helianthus Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453754|ref|XP_004144621.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/731 (69%), Positives = 602/731 (82%), Gaps = 23/731 (3%)
Query: 14 LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
L +G GI GIVG + +LI +LL +V KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25 LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84
Query: 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
+VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85 SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
GEVF+RAC+FASGLV GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
L+HSLNET+V+TLIC+SKQL+KL +SSSL T++N+IYFE+ G E D S S W V
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
SFSEV KLG +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE+G+ WFYTGDIG +PDGCLEIIDRKKDIVKLQHGEYISLGK EAAL+SS YVDN+M
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGKAEAALLSSKYVDNVM 624
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
++ADPFHNYCVA+VVP ALE+WA EA I Y D S+LC E ++EVQ++LSK
Sbjct: 625 VYADPFHNYCVAVVVPLRPALEEWAKEAGINYGDFSQLCENGEIISEVQRSLSK------ 678
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
V K AKL KFEIP KI L P+PWTPE+GLVTAALKIKREQ+KA
Sbjct: 679 -----------------VGKDAKLQKFEIPEKIVLAPDPWTPESGLVTAALKIKREQVKA 721
Query: 734 KFKDDLQMLYQ 744
KFKD LQ LY+
Sbjct: 722 KFKDQLQQLYK 732
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511787|ref|XP_004164053.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/731 (69%), Positives = 602/731 (82%), Gaps = 23/731 (3%)
Query: 14 LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
L +G GI GIVG + +LI +LL +V KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25 LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84
Query: 74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
+VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85 SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
GEVF+RAC+FASGLV GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
L+HSLNET+V+TLIC+SKQL+KL +SSSL T++N+IYFE+ G E D S S W V
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
SFSEV KLG +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324
Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504
Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613
DE+G+ WFYTGDIG +PDGCLEIIDRKKDIVKLQHGEYISLGK EAAL+SS YVDN+M
Sbjct: 565 DDEKGIRWFYTGDIGAFHPDGCLEIIDRKKDIVKLQHGEYISLGKAEAALLSSKYVDNVM 624
Query: 614 IHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVS 673
++ADPFHNYCVA+VVP ALE+WA EA I Y D S+LC E ++EVQ++LSK
Sbjct: 625 VYADPFHNYCVAVVVPLRPALEEWAKEAGINYGDFSQLCENGEIISEVQRSLSK------ 678
Query: 674 RTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
V K AKL KFEIP KI L P+PWTPE+GLVTAALKIKREQ+KA
Sbjct: 679 -----------------VGKDAKLQKFEIPEKIVLAPDPWTPESGLVTAALKIKREQVKA 721
Query: 734 KFKDDLQMLYQ 744
KFKD LQ LY+
Sbjct: 722 KFKDQLQQLYK 732
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462487|ref|XP_003601525.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357469953|ref|XP_003605261.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355490573|gb|AES71776.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355506316|gb|AES87458.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1067 bits (2760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/727 (70%), Positives = 599/727 (82%), Gaps = 23/727 (3%)
Query: 17 KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
K G G V A ++ +++PVL S+ KKK K RGVPVEV GE GYA+RNA+ ELVEV
Sbjct: 23 KDHGELGTVFAIVIGIIVPVLFSVFFLGKKKGKVRGVPVEVSGESGYAVRNARYSELVEV 82
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
PWKGA TMA LFEQSCK H +RFLG RKL+GK+FVT+SDGRKFEK+HLG+YEW+TYGEV
Sbjct: 83 PWKGAPTMAHLFEQSCKKHTHNRFLGTRKLIGKEFVTSSDGRKFEKVHLGEYEWETYGEV 142
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
F R +FASGL+ GH++D+ AI ++T EWFIA QGCFRQ+ITVVTIY+SLGEDALIH
Sbjct: 143 FARVSNFASGLLKLGHDIDSHVAIFSDTRAEWFIALQGCFRQNITVVTIYASLGEDALIH 202
Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
SLNETQV+TLICD K L KL A+ S L +++N+IYFE+D E+ + G SN ++SF
Sbjct: 203 SLNETQVSTLICDVKLLNKLDAIRSKLTSLQNIIYFEDDSKEEHTFSEGLSSNCKIASFD 262
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
EVEKLGK SPV+PSLPS+N VAV+MYTSGSTGLPKGVMITHGNIVAT AA+ T+IPN G
Sbjct: 263 EVEKLGKESPVEPSLPSKNAVAVVMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGS 322
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
DVYLAYLPLAHV E+AAES+ML AG AIGYGS +T+TDTS+K+KKGTKGDV+VLKPTL+
Sbjct: 323 KDVYLAYLPLAHVFEMAAESVMLAAGVAIGYGSPMTLTDTSNKVKKGTKGDVTVLKPTLL 382
Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
AVPAI DR+R+GVVKKVEEKGGL KNLF I YKRRLAAV+GSW GAWG+E+++WD I+F
Sbjct: 383 TAVPAIIDRIRDGVVKKVEEKGGLAKNLFQIAYKRRLAAVKGSWLGAWGVEKLVWDTIIF 442
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
K +R VLGG +RFM+CGGAPLS DSQ+FINIC+GAPIGQ YGLTET AG+ FSE DD SV
Sbjct: 443 KKIRTVLGGNLRFMLCGGAPLSGDSQQFINICVGAPIGQGYGLTETFAGAAFSEADDYSV 502
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
GRVGPP+PCCYIKLVSW+EGGY +SDKPMPRGE+VVGGF+VTAGYF N KT EV+KVDE
Sbjct: 503 GRVGPPLPCCYIKLVSWEEGGYLSSDKPMPRGEVVVGGFSVTAGYFKNQDKTDEVFKVDE 562
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
+G+ WFYTGDIG+ +PDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL S DYVD+IM+HA
Sbjct: 563 KGVRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALASGDYVDSIMVHA 622
Query: 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTE 676
DPFH+YCVALVV SH++LEKWA E I+Y+D +LCNK EAV EV Q++SKA+
Sbjct: 623 DPFHSYCVALVVASHQSLEKWAQETGIEYKDFPDLCNKPEAVTEVLQSISKAAK------ 676
Query: 677 FFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736
AAKL K E+PAKIKL+ +PWTPE+GLVTAALK+KREQLKAKF
Sbjct: 677 -----------------AAKLQKTEVPAKIKLLADPWTPESGLVTAALKLKREQLKAKFN 719
Query: 737 DDLQMLY 743
DDLQ LY
Sbjct: 720 DDLQKLY 726
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 744 | ||||||
| TAIR|locus:2058384 | 720 | LACS8 "AT2G04350" [Arabidopsis | 0.928 | 0.959 | 0.632 | 2.6e-261 | |
| TAIR|locus:2204765 | 691 | LACS9 "AT1G77590" [Arabidopsis | 0.850 | 0.916 | 0.598 | 6.2e-227 | |
| UNIPROTKB|O95573 | 720 | ACSL3 "Long-chain-fatty-acid-- | 0.797 | 0.823 | 0.454 | 5.2e-149 | |
| UNIPROTKB|J9P9G0 | 720 | ACSL3 "Uncharacterized protein | 0.797 | 0.823 | 0.445 | 9.6e-148 | |
| UNIPROTKB|F1MEX9 | 720 | ACSL3 "Uncharacterized protein | 0.797 | 0.823 | 0.440 | 2.5e-147 | |
| MGI|MGI:1921455 | 720 | Acsl3 "acyl-CoA synthetase lon | 0.797 | 0.823 | 0.447 | 5.3e-147 | |
| RGD|70552 | 720 | Acsl3 "acyl-CoA synthetase lon | 0.797 | 0.823 | 0.447 | 5.3e-147 | |
| UNIPROTKB|F1SR72 | 720 | ACSL3 "Uncharacterized protein | 0.798 | 0.825 | 0.446 | 1.4e-146 | |
| UNIPROTKB|F1P451 | 720 | ACSL3 "Uncharacterized protein | 0.838 | 0.866 | 0.421 | 1.8e-146 | |
| UNIPROTKB|F1MBW3 | 722 | ACSL4 "Uncharacterized protein | 0.778 | 0.801 | 0.441 | 3.3e-145 |
| TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2318 (821.0 bits), Expect = 2.6e-261, Sum P(2) = 2.6e-261
Identities = 442/699 (63%), Positives = 532/699 (76%)
Query: 17 KGS--GIYXXXXXXXXXXXXXXXXSMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELV 74
KGS G+Y S+++ KK K+R Y +R+A+ PELV
Sbjct: 14 KGSDFGVYGIIGGGIVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELV 73
Query: 75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYG 134
+VPW+GA+TM ALFEQSCK + +DR LG R+ + K+F+TASDGRKFEKLHLG+Y+WQ+YG
Sbjct: 74 DVPWEGAATMPALFEQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYG 133
Query: 135 EVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL 194
EVF+R C+FASGLVN GHNVD R AI ++T EWFIAFQGCFRQSITVVTIY+SLGE+AL
Sbjct: 134 EVFERVCNFASGLVNVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEAL 193
Query: 195 IHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSS 254
I+SLNET+V+TLICD T+KN+IY E DG + S + + TVSS
Sbjct: 194 IYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSS 253
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
SEVEKLG+++ V P LPS+NGVAVIM+TSGSTGLPKGVMITHGN+VATAA + ++P
Sbjct: 254 ISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKL 313
Query: 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374
++D Y+AYLPLAHV EL AE ++ +G AIGYGS +T+TDTS+K+KKGTKGDVS LKPT
Sbjct: 314 DKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPT 373
Query: 375 LMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
+M AVPAI DRVR + K LF+ YKRRLAAV+GSWFGAWGLE+MLWDA+
Sbjct: 374 IMTAVPAILDRVREGVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDAL 433
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
VFK +RAVLGG IRFM+ GGAPLS DSQRFINICMG+PIGQ YGLTETCAG+TFSEWDDP
Sbjct: 434 VFKKIRAVLGGHIRFMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDP 493
Query: 495 SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPMPRGEIVVGG +VTAGYFNN KT EVYKV
Sbjct: 494 AVGRVGPPLPCGYVKLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
DE+G WFYTGDIG+ +PDGCLE+IDRKKDIVKLQHGEY+SLGKVEAAL SS+YVDNIM+
Sbjct: 554 DEKGTRWFYTGDIGRFHPDGCLEVIDRKKDIVKLQHGEYVSLGKVEAALGSSNYVDNIMV 613
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674
HADP ++YCVALVVPS ALEKWA EA +K+ + +ELC K EAV EVQQ+L+KA
Sbjct: 614 HADPINSYCVALVVPSRGALEKWAEEAGVKHSEFAELCEKGEAVKEVQQSLTKAGKAAKL 673
Query: 675 TEFFLSRRYK------TTLCLQVAKAAKLDKFEIPAKIK 707
+F L + K T V A K+ + +I +K K
Sbjct: 674 EKFELPAKIKLLSEPWTPESGLVTAALKIKREQIKSKFK 712
|
|
| TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2029 (719.3 bits), Expect = 6.2e-227, Sum P(2) = 6.2e-227
Identities = 383/640 (59%), Positives = 473/640 (73%)
Query: 39 SMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQD 98
+ +V + KK K+R YAIRN + E V W+ ST+ LFE SC +H
Sbjct: 15 TFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEISCNAHSDR 74
Query: 99 RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158
FLG RKL+ ++ T+ DG+ FEKLHLGDYEW T+G+ + C FASGLV GH + R
Sbjct: 75 VFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIGHKTEERV 134
Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXX 218
AI A+T EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC
Sbjct: 135 AIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSKELKKLMD 194
Query: 219 XXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVA 278
T+K VI ++ E S V+ SNW +SF++V+KLG+ +PVDP+ P VA
Sbjct: 195 ISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNFPLSADVA 248
Query: 279 VIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
VIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LELAAES+M
Sbjct: 249 VIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILELAAESVM 308
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR
Sbjct: 309 ATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVRKKVDAKG 368
Query: 399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
L+K LF+ Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++ GGAPLS
Sbjct: 369 GLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLLSGGAPLS 428
Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV W EGGY
Sbjct: 429 GDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLVDWAEGGY 488
Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
TSDKPMPRGEIV+GG N+T GYF N KT EVYKVDE+GM WFYTGDIG+ +PDGCLEI
Sbjct: 489 LTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFHPDGCLEI 548
Query: 579 IDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWA 638
IDRKKDIVKLQHGEY+SLGKVEAAL S YV+NIM+HAD F++YCVALVV S +E WA
Sbjct: 549 IDRKKDIVKLQHGEYVSLGKVEAALSISPYVENIMVHADSFYSYCVALVVASQHTVEGWA 608
Query: 639 HEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFF 678
+ I + + ELC K +AV EV +L KA+ SR E F
Sbjct: 609 SKQGIDFANFEELCTKEQAVKEVYASLVKAAKQ-SRLEKF 647
|
|
| UNIPROTKB|O95573 ACSL3 "Long-chain-fatty-acid--CoA ligase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 5.2e-149, Sum P(2) = 5.2e-149
Identities = 277/610 (45%), Positives = 368/610 (60%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H+LNET+VT +I ++++I DG S GI
Sbjct: 197 AIVHALNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGI--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + VE LG ++ ++ P S P + +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 AERIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRN 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
SE D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG +VT GY+ N K
Sbjct: 486 ISEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFEPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
VDNI +A+ +H+Y + VVP+ K L + A + +K ELCN E NEV + LS+
Sbjct: 606 LVDNICAYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSE 664
Query: 668 ASTLVSRTEF 677
A+ S +F
Sbjct: 665 AAISASLEKF 674
|
|
| UNIPROTKB|J9P9G0 ACSL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 272/610 (44%), Positives = 365/610 (59%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + + LG R++L +D +G+ F+K+ LG+Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKDKKLLGTREILSEDDEVQPNGKIFKKVILGNYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ + P S P +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVQALGAKASTENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 AERIPGLGEGDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
++LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TTMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFVLAYNYKMEQISR------GHG 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D +F+ VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+C T
Sbjct: 426 TPLCDRFIFRKVRGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTIGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLS 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
VDNI +A+ +H+Y + +VP+ K L + A + ++ ELCN E NEV + LS+
Sbjct: 606 LVDNICAYANSYHSYVIGFIVPNQKELTELARKKGLQ-GTWEELCNSCEMENEVLKVLSE 664
Query: 668 ASTLVSRTEF 677
A+ S +F
Sbjct: 665 AAISASLEKF 674
|
|
| UNIPROTKB|F1MEX9 ACSL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1289 (458.8 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 269/610 (44%), Positives = 364/610 (59%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMHAKNKFKDKRLLGTREILNEEDEVQPNGKVFKKVILGSYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA +F +GL G T AI ET EW +A Q CF + +VT+Y++LG
Sbjct: 137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMVAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V LG ++ ++ P S P+ + +AVIMYTSGSTG+PKGVMI+H NI+A +
Sbjct: 252 IVHTMAAVRALGAKASMENKPLSKPAPSDIAVIMYTSGSTGIPKGVMISHSNIIAGITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D KIKKG+KGD
Sbjct: 312 AERIPELGEKDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQVFKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GHS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D+ +F+ VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+C T
Sbjct: 426 TPLCDSFIFRKVRGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A + + ELCN E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARRKGL-HGTWEELCNSCEMENEVLKVLSE 664
Query: 668 ASTLVSRTEF 677
A+ S +F
Sbjct: 665 AAISASLEKF 674
|
|
| MGI|MGI:1921455 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1290 (459.2 bits), Expect = 5.3e-147, Sum P(2) = 5.3e-147
Identities = 273/610 (44%), Positives = 363/610 (59%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA F +GL G AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ V+ S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ +
Sbjct: 252 IVHTMAAVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
SVLKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDRFVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKTDFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A K ELCN +E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFK-GTWEELCNSSEMENEVLKVLSE 664
Query: 668 ASTLVSRTEF 677
A+ S +F
Sbjct: 665 AAISASLEKF 674
|
|
| RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1290 (459.2 bits), Expect = 5.3e-147, Sum P(2) = 5.3e-147
Identities = 273/610 (44%), Positives = 362/610 (59%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + R LG R++L ++ +G+ F+K+ LG Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y +VF RA F +GL G AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
A++H LNET+VT +I ++++I DG S G+
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251
Query: 251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + + V+ LG ++ VD S P + +AVIMYTSGSTG+PKGVMI+H NI+A+ +
Sbjct: 252 IVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371
Query: 368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
SVLKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
L D VF++VR +LGG IR ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 426 TPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N K
Sbjct: 486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T + DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 546 TKADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLP 605
Query: 608 YVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+DNI +A+ +H+Y + VVP+ K L + A ELCN +E NEV + LS+
Sbjct: 606 LIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFN-GTWEELCNSSEMENEVLKVLSE 664
Query: 668 ASTLVSRTEF 677
A+ S +F
Sbjct: 665 AAISASLEKF 674
|
|
| UNIPROTKB|F1SR72 ACSL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1282 (456.3 bits), Expect = 1.4e-146, Sum P(2) = 1.4e-146
Identities = 272/609 (44%), Positives = 362/609 (59%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
L V + G T+ +F + LG R++L ++ +G+ F+K+ LG+Y W +
Sbjct: 77 LASVLYPGCDTLDKVFMHAKNKFKDKSLLGTREVLNEEDEVQPNGKIFKKVILGNYNWLS 136
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y EVF RA +F +GL G T AI ET EW IA Q CF + +VT+Y++LG
Sbjct: 137 YEEVFVRASNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
A++H LNET+VT +I ++++I DG K S
Sbjct: 197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DG--KPPAWSEFPKGVI 252
Query: 252 VSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
V + + V+ LG ++ V+ P S P +AVIMYTSGSTGLPKGVMI+H NI+A +
Sbjct: 253 VHTMAAVQALGAKASVENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMA 312
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
IP G DVY+ YLPLAHVLEL+AE + L GC IGY S T+ D SSKIKKG+KGD
Sbjct: 313 ERIPELGEKDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDA 372
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
S+LKPTLMAAVP I DR+ +NLF + Y ++ + G
Sbjct: 373 SMLKPTLMAAVPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GCST 426
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
L D +F+ VR++LGG R ++CGGAPLSA +QRF+NIC P+GQ YGLTE+ T
Sbjct: 427 PLCDRFIFRKVRSLLGGNTRLLLCGGAPLSAATQRFMNICFCCPVGQGYGLTESSGAGTI 486
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
+E D + GRVG P+ CC IKL +W+EGGY +DKP PRGEI++GG NVT GY+ N KT
Sbjct: 487 TEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKT 546
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ DE G W TGDIG+ PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 547 KADFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPL 606
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKA 668
+DNI +A+ +H+Y + VVP+ K L + A + + ELCN E NEV + LS+A
Sbjct: 607 IDNICAYANSYHSYVIGFVVPNQKELTELARKKGLT-GTWEELCNSREMENEVLKVLSEA 665
Query: 669 STLVSRTEF 677
+ S +F
Sbjct: 666 AISASLEKF 674
|
|
| UNIPROTKB|F1P451 ACSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 270/640 (42%), Positives = 379/640 (59%)
Query: 42 VARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFL 101
+A+ K+VK R Y N+ + L V + G T+ +F+ + + + L
Sbjct: 45 IAKSKQVKARPVNNRPGGA--YRSVNS-LHCLASVLYPGCDTLDKVFKYAKTKYKDKKLL 101
Query: 102 GKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161
G R++L ++ G+ F+K+ LG Y W +Y +V+ +A +F +GL G T AI
Sbjct: 102 GTREILKEEDEIQPSGKVFKKVILGKYTWLSYEDVYIKAVNFGNGLAVLGQQPKTNIAIF 161
Query: 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXX 221
ET EW IA Q CF + +VT+Y++LG A++H LNET+VTT+I
Sbjct: 162 CETRAEWMIAAQACFMCNYQLVTLYATLGGAAIVHGLNETEVTTIITSKELMQTKLKEIV 221
Query: 222 XXXT-IKNVIYFENDGSEKD-SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV 279
++++I DG S G+ T++S + + P + +AV
Sbjct: 222 SQIPRLRHIITV--DGKPTTWSEFPKGVIVHTMASVQAMGAKADSGNKQQARPVPSDIAV 279
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIML 339
IMYTSGSTG+PKGVMI+H NI+A + IPN G D+Y+ YLPLAHVLEL+AE + L
Sbjct: 280 IMYTSGSTGIPKGVMISHCNIIAGITGMAERIPNLGEKDIYIGYLPLAHVLELSAELVCL 339
Query: 340 CAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXX 399
GC IGY S T+ D SSKIKKG+KGDV+ LKPTLMAAVP I DR+
Sbjct: 340 SHGCRIGYSSPQTLADQSSKIKKGSKGDVTTLKPTLMAAVPEIMDRIYKNVMNKVNEMTS 399
Query: 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
+NLF + Y ++ + G L D+++F+ VR +LGG+IR ++CGGAPLSA
Sbjct: 400 FQRNLFILAYNYKMEQISK------GYTTPLCDSLIFRKVRMLLGGKIRILLCGGAPLSA 453
Query: 460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
+QRF+NIC P+GQ YGLTE+ T +E D + GRVG P+ CC IKL++W+EGGY
Sbjct: 454 ATQRFMNICFCCPVGQGYGLTESAGAGTITEVWDYTTGRVGAPLVCCEIKLLNWEEGGYY 513
Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
+DKP PRGEI++GG NVT GY+ N G+T + + +DE G W +TGDIG+ + DGCL+II
Sbjct: 514 NTDKPYPRGEILIGGQNVTVGYYKNEGRTRKDFTIDENGQRWLHTGDIGEFHQDGCLKII 573
Query: 580 --DRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKW 637
DRKKD+VKLQ GEY+SLGKVEAAL + VDNI +A FH+Y + VVP+ K L +
Sbjct: 574 AIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYASSFHSYVIGFVVPNQKELAEL 633
Query: 638 AHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEF 677
A + K E+CN +E EV + L++A+ + +F
Sbjct: 634 ARKKGFK-GTWEEICNSSEMEKEVLKVLAEAAMAANLEKF 672
|
|
| UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1276 (454.2 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 265/600 (44%), Positives = 363/600 (60%)
Query: 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
++++P GA T+ LF+ + + LG R++L ++ +G+ F+KL LG+Y+W
Sbjct: 81 VIDIP--GADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLN 138
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
Y EV R +F SGL G + AI ET EW IA Q CF+ + +VT+Y++LG +
Sbjct: 139 YLEVNRRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGRE 198
Query: 193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
A++H LNE++ T LI +K++IY +N K G +
Sbjct: 199 AVVHGLNESEATYLITSVELLESKLKTALIDINCVKHIIYVDNKTINKAEYPEG----FE 254
Query: 252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ S VE+LG + V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A
Sbjct: 255 IHSMQSVEELGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 314
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
IP G D Y+ YLPLAHVLEL AE GC IGY S LT++D SSKIKKG+KGD
Sbjct: 315 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 374
Query: 369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
+VLKPTLMAAVP I DR+ + K LF IGY +L ++ G +
Sbjct: 375 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 428
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
L + I+FK V+A+LGG +R M+ GGAPLS +QRF+N+C P+GQ YGLTETC T
Sbjct: 429 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTV 488
Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
+E D + GRVG P+ CC IKL W EGGY DKP PRGEIV+GG N++ GYF N KT
Sbjct: 489 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKT 548
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+E Y VDE G WF TGDIG+ +PDGCL+IIDRKKD+VKLQ GEY+SLGKVEAAL +
Sbjct: 549 AEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPL 608
Query: 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCN----KAEAVNEVQQA 664
+DNI A +Y ++ VVP+ + L A + ++ + ++CN +AE + E+++A
Sbjct: 609 IDNICAFAKSDQSYVISFVVPNQQKLTLLAQQKGVEGTWV-DICNNPAMEAEILKEIREA 667
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O95573 | ACSL3_HUMAN | 6, ., 2, ., 1, ., 3 | 0.4356 | 0.9206 | 0.9513 | yes | no |
| Q63151 | ACSL3_RAT | 6, ., 2, ., 1, ., 3 | 0.4342 | 0.9206 | 0.9513 | yes | no |
| Q9CZW4 | ACSL3_MOUSE | 6, ., 2, ., 1, ., 3 | 0.4342 | 0.9206 | 0.9513 | yes | no |
| Q55DR6 | FCSA_DICDI | 6, ., 2, ., 1, ., 3 | 0.3171 | 0.8333 | 0.9295 | yes | no |
| Q9SJD4 | LACS8_ARATH | 6, ., 2, ., 1, ., 3 | 0.7148 | 0.9072 | 0.9375 | yes | no |
| Q5R668 | ACSL3_PONAB | 6, ., 2, ., 1, ., 3 | 0.4342 | 0.9206 | 0.9513 | yes | no |
| P30624 | LCF1_YEAST | 6, ., 2, ., 1, ., 3 | 0.3197 | 0.8615 | 0.9157 | yes | no |
| O60135 | LCF1_SCHPO | 6, ., 2, ., 1, ., 3 | 0.3290 | 0.8521 | 0.9378 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.976 |
| 3rd Layer | 6.2.1.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 744 | |||
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-151 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-144 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-133 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-116 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-113 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-111 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 2e-96 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-93 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-68 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-57 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-51 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-46 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 3e-44 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-44 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 6e-44 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-40 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-38 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-36 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 1e-34 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-32 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 5e-32 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-31 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-29 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-29 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 5e-28 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-27 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-26 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-26 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-25 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 5e-25 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-24 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-24 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-24 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-24 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-22 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-22 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-22 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 4e-22 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-22 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 8e-22 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-21 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-19 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-19 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-19 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 3e-19 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 5e-19 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 5e-19 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-18 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 5e-18 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 8e-18 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-17 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-17 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 6e-17 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-16 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 4e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-16 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 5e-16 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 5e-16 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-16 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 1e-15 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-15 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-15 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-15 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-15 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 5e-15 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-14 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-14 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-14 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-14 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 9e-14 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-13 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 2e-13 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-13 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-13 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 7e-13 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-12 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-12 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-12 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-12 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 6e-12 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-11 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-11 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-11 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-11 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-11 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 5e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 6e-11 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 8e-11 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-10 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-10 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-10 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-10 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-10 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-10 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-10 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-10 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-10 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-10 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 7e-10 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-10 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 9e-10 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-09 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-09 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-09 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-09 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 3e-09 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-09 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-09 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-09 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 6e-09 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 7e-09 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-08 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-08 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 2e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-08 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-08 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-08 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-08 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 7e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-08 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 7e-08 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-07 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-07 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-07 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 4e-07 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 6e-07 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 8e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-06 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-06 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-06 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-06 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 5e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 5e-06 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 5e-06 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 6e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 7e-06 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-06 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 9e-06 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 9e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 1e-05 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 2e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-05 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-05 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 4e-05 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 5e-05 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 5e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 5e-05 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 7e-05 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 8e-05 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 9e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 9e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-04 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-04 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 1e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 2e-04 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 2e-04 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 4e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-04 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 5e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-04 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-04 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 0.001 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.001 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 0.001 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.001 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.001 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.002 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.002 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.002 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.002 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 0.003 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.003 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 0.003 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.004 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 1354 bits (3506), Expect = 0.0
Identities = 521/720 (72%), Positives = 606/720 (84%), Gaps = 24/720 (3%)
Query: 25 VGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTM 84
+GA IV +L+P+LL++++ KK K+RGVPV+VGGEPGYAIRNA+ PELVE PW+GA+T+
Sbjct: 1 MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60
Query: 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
AALFEQSCK + R LG RKL+ ++F T+SDGRKFEKLHLG+YEW TYG+VF+R C+FA
Sbjct: 61 AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120
Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
SGLV GHN + R AI A+T EW IA QGCFRQ+ITVVTIY+SLGE+AL HSLNET+VT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180
Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
T+ICDSKQLKKL +SS L+T+K VIY +++G + DS +SG SNWTVSSFSEVEKLGK
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGS-SNWTVSSFSEVEKLGKE 239
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
+PVDP LPS N +AVIMYTSGSTGLPKGVM+THGNIVAT A + T++P G++DVYLAYL
Sbjct: 240 NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYL 299
Query: 325 PLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384
PLAH+LELAAES+M G AIGYGS LT+TDTS+KIKKGTKGD S LKPTLM AVPAI D
Sbjct: 300 PLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILD 359
Query: 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
RVR+GV KKV+ KGGL K LF+I YKRRLAA+EGSWFGAWGLE++LWDA+VFK +RAVLG
Sbjct: 360 RVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
GRIRFM+ GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG+TFSEWDD SVGRVGPP+P
Sbjct: 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLP 479
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
CCY+KLVSW+EGGY SDKPMPRGEIV+GG +VT GYF N KT EVYKVDERGM WFYT
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCV 624
GDIGQ +PDGCLEIIDRKKDIVKLQHGEY+SLGKVEAAL S YVDNIM+HADPFH+YCV
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCV 599
Query: 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYK 684
ALVVPS +ALEKWA +A I Y + +ELC K EAV EVQQ+LSKA
Sbjct: 600 ALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKA---------------- 643
Query: 685 TTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744
AKAA+L+KFEIPAKIKL+PEPWTPE+GLVTAALK+KREQ++ KFKDDL+ LY+
Sbjct: 644 -------AKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696
|
Length = 696 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 745 bits (1925), Expect = 0.0
Identities = 260/619 (42%), Positives = 346/619 (55%), Gaps = 81/619 (13%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G YEW +Y EV +RA + SGL G + I AE EW I Q CF QS+ +V +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
Y +LGE+A+ + LNET+++ + CD+
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
V SF E+E+LGK++ V P+ P +A IMYTSG+TG PKGVM+THGNIVA A
Sbjct: 86 ----VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141
Query: 306 AIKTLIPN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
I ++P G +DVY++YLPLAH+ E E++ L G IGY S T +G
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
KGD+ LKPT+ VP + DR+ +G++ KV KGGL + LFN Y +LAA+
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH---- 248
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
G LWD +VFK ++A LGGR+R M+ GGAPLS D+Q F+ + +G P+ Q YGLTETCA
Sbjct: 249 GYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCA 308
Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
G T S+ D + G VGPP+PCC IKLV E GY D P PRGEI + G NV GY+ N
Sbjct: 309 GGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKN 367
Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
P KT+E + D G WF+TGDIG+ PDG L+IIDRKK++ KL GEY++L K+E
Sbjct: 368 PEKTAEAFDED--G--WFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYK 423
Query: 605 SSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664
SS VD I ++ D ++ VA+VVP LEKWA E D ELCN + + +
Sbjct: 424 SSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKD 483
Query: 665 LSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAAL 724
L ++ K L FEI I L PEP+TPE GL+T
Sbjct: 484 L-----------------------NEIGKENGLKGFEIVKAIHLTPEPFTPENGLLTPTF 520
Query: 725 KIKREQLKAKFKDDLQMLY 743
K+KR QLK ++K ++ +Y
Sbjct: 521 KLKRPQLKKRYKKEIDEMY 539
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 453 bits (1168), Expect = e-151
Identities = 192/638 (30%), Positives = 300/638 (47%), Gaps = 71/638 (11%)
Query: 116 DGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGC 175
DG LG +E TY E+++R + ASGL++ G R AI A EW IA
Sbjct: 31 DGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAI 90
Query: 176 FRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235
V IYS+ + L + LNE++ + ++++L L + D
Sbjct: 91 LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIID 150
Query: 236 GSEKDSGVSGGISNWTVSS-----FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
V V ++ G + P P + +A I+YTSG+TG P
Sbjct: 151 --LVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAP--PKPDDLATIIYTSGTTGTP 206
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
KGVM+TH N++A A I ++P G D L++LPLAH+ E A E + YG
Sbjct: 207 KGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGV 260
Query: 351 LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN---- 406
+ + D+ ++PT+M VP ++++V +G+++KV + + + LF
Sbjct: 261 TVLFKEDPRT---LLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317
Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
+ YK+ A+ G +W L + D +VF+ +R LGGRIR+ + GGAPLS + F
Sbjct: 318 VAYKKISRALLGGGPLSWLL---VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374
Query: 467 ICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
+G PI + YGLTET A + + D +G VG P+P +K+
Sbjct: 375 S-LGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419
Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GEI+V G NV GY+ NP T+E E G WF TGD+G++ DG L I RKK+++
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEA--FTEDG--WFRTGDLGELDEDGYLVITGRKKELI 475
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAH-EASIKY 645
KL +G+ I+ +E+ L S ++ I + D + VAL+VP ALEKWA +
Sbjct: 476 KLSNGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVIS 534
Query: 646 EDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAK 705
EL + + + ++K +L FE K
Sbjct: 535 ASREELARDPKLLKLILPRVNKG-------------------------NKRLFGFEQIKK 569
Query: 706 IKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
L+P+ +TPE G +T LK+KR + ++KD+++ +Y
Sbjct: 570 FVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVY 607
|
Length = 613 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 436 bits (1122), Expect = e-144
Identities = 231/705 (32%), Positives = 339/705 (48%), Gaps = 83/705 (11%)
Query: 60 EPGYAI--------------RNAQIP-ELVEV--PWKGASTMAALFEQSCKSHPQDRFLG 102
E GY++ R+A+ P +LV T+ F + ++ ++LG
Sbjct: 5 EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLG 64
Query: 103 KRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162
R DG +G+Y+W TYGE + SGLV G +
Sbjct: 65 TR--------IRVDGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYF 110
Query: 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS 222
EW I C S V +Y +LG DA+ +N +V + C + L L + S
Sbjct: 111 INRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE 170
Query: 223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282
+ +++ ++ S SG + + ++S++ G+ SP P VA I Y
Sbjct: 171 IPSVRLIVVVGGADEPLPSLPSG--TGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICY 228
Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
TSG+TG PKGV++THGN++A A SDV+++YLPLAH+ E + +ML G
Sbjct: 229 TSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVNQIVMLHYG 287
Query: 343 CAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400
A+G+ G L + D D++ L+PT+ +VP +++R+ +G+ V+E GGL
Sbjct: 288 VAVGFYQGDNLKLMD-----------DLAALRPTIFCSVPRLYNRIYDGITNAVKESGGL 336
Query: 401 TKNLFNIGYK-RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
+ LFN Y ++ A G +WD +VF ++A LGGR+RFM G +PLS
Sbjct: 337 KERLFNAAYNAKKQALENGKNPSP------MWDRLVFNKIKAKLGGRVRFMSSGASPLSP 390
Query: 460 DSQRFINICMGAPIGQAYGLTET-CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
D F+ IC G + + YG+TET C S E D G VG P P C +KLV E Y
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNY 449
Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEI 578
+ D+P PRGEI V G + GY+ + +T EV +DE G W +TGDIG P G L+I
Sbjct: 450 TSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV--IDEDG--WLHTGDIGLWLPGGRLKI 505
Query: 579 IDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWA 638
IDRKK+I KL GEYI+ K+E +V ++ D ++ VA+VV + L+ WA
Sbjct: 506 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWA 565
Query: 639 HEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLD 698
IKYEDL +LCN V + V + A+L
Sbjct: 566 ASEGIKYEDLKQLCNDPRVRAAVLADM-----------------------DAVGREAQLR 602
Query: 699 KFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
FE + L+PEP+T E GL+T K+KR Q KA F + +Y
Sbjct: 603 GFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMY 647
|
Length = 651 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 410 bits (1056), Expect = e-133
Identities = 217/686 (31%), Positives = 342/686 (49%), Gaps = 73/686 (10%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRK--FEKLHLGDYEWQTY 133
W E+ CK R L R + + K+ V +DG++ E H + + TY
Sbjct: 65 WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITY 124
Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
E+++R +F GL G + AI ET EW + G + QS+ T+Y++LGEDA
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184
Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKN--VIYFENDGSEKDSGVSGGISNWT 251
L ++L ET+ ++C+ K + L + S + N +IY ++ + D+
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKS-GGMPNTTIIYLDSLPASVDTE------GCR 237
Query: 252 VSSFSEVEKLGKR--SPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ ++++V G S ++P N +A+IMYTSG+TG PKGVM THG++ A A++
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297
Query: 309 ----TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
LI P + Y +YLPLAH++E +I L G IG+GS T+TDT ++
Sbjct: 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----P 353
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
GD++ +P + VP IFD +++ V K+ G L + +F+ Y+ RL A++
Sbjct: 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------ 407
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
G + W+ VF + RAVLGGR+R M+ GG PLSA +Q F+N+ G + Q +GLTET
Sbjct: 408 GKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
D VG + +KL+ +E YK +D P PRGEI++ G + GY+
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQ 524
Query: 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
T EV +DE G WF+TGD+G + +G L II R K + K GEYI+L +EA
Sbjct: 525 EELTREV--LDEDG--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL-- 578
Query: 605 SSDYVDN-------IMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEA 657
Y N + + P +Y ALV+ +A E I+ E + E
Sbjct: 579 ---YGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGE-YPAILKDPEF 634
Query: 658 VNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEA 717
+ ++L + A+AA FEI ++++ + WTPE
Sbjct: 635 QKKATESLQE-----------------------TARAAGRKSFEIVRHVRVLSDEWTPEN 671
Query: 718 GLVTAALKIKREQLKAKFKDDLQMLY 743
G++TAA+K+KR + ++ D ++ L+
Sbjct: 672 GVLTAAMKLKRRVIDERYADLIKELF 697
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 356 bits (917), Expect = e-116
Identities = 164/603 (27%), Positives = 261/603 (43%), Gaps = 150/603 (24%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G ++ T+ E+ +R A+GL+ G R AILAE EW IA V I
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
Y + + +V ++ DS A V++ E+ +
Sbjct: 61 YPTSSPE---------EVAYILNDSG------AR---------VVFVEDKPDD------- 89
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
+A ++YTSG+TG PKGVM+TH N++A AA
Sbjct: 90 -------------------------------LATLIYTSGTTGNPKGVMLTHRNLLAQAA 118
Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTK 365
A+ +IP D L++LPLAHV E L + G+ + ++ + +
Sbjct: 119 ALLEVIP-LSPGDRVLSFLPLAHVFEQ-----RLGEYLPLSSGARVNFAESPETLLE--- 169
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
D+ ++PT+ AVP +++++ G+ KV G L + LF W
Sbjct: 170 -DLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLF-----------------RW- 210
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
A+ GGR+RF + GGAPL + F +G PI + YGLTET
Sbjct: 211 ---------------ALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGV 254
Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
+T + D +G VG P+P +++ GEI+V G NV GY+ NP
Sbjct: 255 ATVNRPGDIRIGTVGKPLPGVEVRIA--------------EDGEILVRGPNVMKGYYKNP 300
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T+E +DE G W +TGDIG++ DG L I DRKKD++ G+ I+ +E AL +
Sbjct: 301 EATAEA--LDEDG--WLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKA 356
Query: 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665
S Y+ ++ D Y AL+V +ALEKWA + + + ++L E +++ +
Sbjct: 357 SPYISQAVVVGDD-RPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEV 415
Query: 666 SKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALK 725
+A+ A+L + E K L+P+ ++ E G +T +K
Sbjct: 416 EEAN-------------------------ARLARVEQIKKFVLLPKEFSIEDGELTPTMK 450
Query: 726 IKR 728
++R
Sbjct: 451 LRR 453
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-113
Identities = 214/693 (30%), Positives = 332/693 (47%), Gaps = 95/693 (13%)
Query: 69 QIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDY 128
+P ++ PW+ F + K +P ++ LG+R++ +D + +G Y
Sbjct: 37 DLPADIDSPWQ-------FFSDAVKKYPNNQMLGRRQV--------TDSK------VGPY 75
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
W TY EV+D A S + + G N R I C EW IA + C Q IT V +Y +
Sbjct: 76 VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAV----SSSLKTIKNVIYFENDGSEKDSGVS 244
LG +A+ +N +V+ ++ + + SS+LKTI V + + +K+
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTI--VSFGDVSSEQKEEAEE 193
Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQ--NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
G+S ++ FS + L D LP + + IMYTSG+TG PKGV++T+ I+A
Sbjct: 194 LGVSCFSWEEFSLMGSL------DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA 247
Query: 303 TAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDT 356
+ L+ R D Y +YLPLAHV + E+ + G +IG+ G + +
Sbjct: 248 EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME- 306
Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
DV LKPT+ VP ++DR+ G+++K+ G L K LF+ Y +L +
Sbjct: 307 ----------DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356
Query: 417 EGSWFGAWGLERM----LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472
GL++ D +VF ++ LGGR+R ++ G APL + F+ + +
Sbjct: 357 RK------GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSV 410
Query: 473 IGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKT-SDKPMPRGEI 530
+ Q YGLTE+C G S + VG VG P+ +L S E GY SD +PRGEI
Sbjct: 411 LSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD--VPRGEI 468
Query: 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590
+ G + +GY T EV +D WF+TGDIG+ P+G ++IIDRKK+I KL
Sbjct: 469 CLRGNTLFSGYHKRQDLTEEVL-IDG----WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQ 523
Query: 591 GEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSE 650
GEY+++ +E + +I ++ + F ++ VA+VVP +ALE WA + K D
Sbjct: 524 GEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWA-ANNNKTGDFKS 582
Query: 651 LCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710
LC +A + L+ K +L FE+ I L P
Sbjct: 583 LCKNLKARKYILDELN-----------------------STGKKLQLRGFEMLKAIHLEP 619
Query: 711 EPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
P+ E L+T K+KR QL +KD + LY
Sbjct: 620 NPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 351 bits (902), Expect = e-111
Identities = 208/670 (31%), Positives = 335/670 (50%), Gaps = 75/670 (11%)
Query: 87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASG 146
+F +S + +P ++ LG R+++ DG+ +G Y W+TY EV++ S
Sbjct: 47 IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVYEEVLQIGSA 92
Query: 147 LVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206
L G +R I C +W +A + C S+ V +Y +LG A+ + ++ ++ +
Sbjct: 93 LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152
Query: 207 ICDSKQLKK-LSAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSSFSEVEKLGKR 264
K++K+ L S K +K ++ F + E D G+ + S+ + +GK
Sbjct: 153 FVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY---SWIDFLHMGKE 209
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----PGRSDVY 320
+P + + P + IMYTSG++G PKGV++TH + + + DVY
Sbjct: 210 NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVY 269
Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378
L++LPLAH+L+ E G ++GY G + D D+ LKPTL+A
Sbjct: 270 LSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------DLMELKPTLLAG 318
Query: 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM---LWDAIV 435
VP +F+R+ EG+ K ++E + +FN YK +LA W + + D +
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA-----WMNRGYSHKKASPMADFLA 373
Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
F+ V+A LGGR+R +I GGAPLS + + F+ + A + Q YGLTET +T D+
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433
Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
+G VG P ++L E GY +P PRGEI V G + +GY+ NP T EV K
Sbjct: 434 MLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMKD 492
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
WF+TGDIG++ P+G L+IIDRKK+++KL GEY++L +E + V++I +
Sbjct: 493 G-----WFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWV 547
Query: 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674
+ D F + VA+VVP+ + KWA + ELC ++ E++
Sbjct: 548 YGDSFKSMLVAVVVPNEENTNKWAKDNGFT-GSFEELC----SLPELK------------ 590
Query: 675 TEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734
E LS K+T A+ KL FE + L +P+ E LVTA LK +R L
Sbjct: 591 -EHILS-ELKST-----AEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKY 643
Query: 735 FKDDLQMLYQ 744
++ ++ +Y+
Sbjct: 644 YQVEIDEMYR 653
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 2e-96
Identities = 210/683 (30%), Positives = 333/683 (48%), Gaps = 81/683 (11%)
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
P +G + +F S + +P + LG+R++ DG+ G Y WQTY EV
Sbjct: 40 PIEGMDSCWDVFRMSVEKYPNNPMLGRREI--------VDGKP------GKYVWQTYQEV 85
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
+D + L + G + + I EW I+ + C + V +Y +LG A+
Sbjct: 86 YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEF 145
Query: 197 SLNETQVTTLICDSKQLKKL-SAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSS 254
++ ++V+ + + K++ +L +S + +K V+ F E K+ + G+ + +
Sbjct: 146 IISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGL---VIYA 202
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
+ E KLG+ D + ++ + IMYTSG+TG PKGVMI++ +IV A + L+ +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 315 GRS----DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
+ DVYL+YLPLAH+ + E + G AIG+ D I+ D+
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG----DVKLLIE-----DLGE 313
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY-------KRRLAAVEGSWFGA 423
LKPT+ AVP + DRV G+ KK+ + G L K +F+ + K+ + VE S
Sbjct: 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPL-- 371
Query: 424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483
D +VF V+ LGG +R ++ G APL++ + F+ + + Q YGLTE+C
Sbjct: 372 -------CDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424
Query: 484 AGSTFSEWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541
AG TF D +G VGPPVP I+L S E Y PRGEI + G + +GY
Sbjct: 425 AG-TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGY 482
Query: 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 601
+ T EV +D W +TGD+G+ P+G ++IIDRKK+I KL GEY+++ +E
Sbjct: 483 YKREDLTKEVL-IDG----WLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIEN 537
Query: 602 ALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEV 661
VD++ ++ + F ++ VA+ P+ + LE+WA E + D + LC +A
Sbjct: 538 IYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVS-GDYNALCQNEKA---- 592
Query: 662 QQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 721
EF L K AK K+ FEI I L P P+ E L+T
Sbjct: 593 -------------KEFILGELVKM------AKEKKMKGFEIIKAIHLDPVPFDMERDLLT 633
Query: 722 AALKIKREQLKAKFKDDLQMLYQ 744
K KR QL ++ + +Y+
Sbjct: 634 PTFKKKRPQLLKYYQSVIDEMYK 656
|
Length = 666 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = 2e-93
Identities = 129/487 (26%), Positives = 189/487 (38%), Gaps = 79/487 (16%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +RA A+ L G R AIL EW +A + V + SL
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L +++ LI D + L KL V L + +I +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV--------------GDDGE 106
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ E L S P+ P + +A I+YTSG+TG PKGVM+TH N++A AA +
Sbjct: 107 GLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAER 166
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
D L LPL + L AG TL + + +
Sbjct: 167 FG-LTPGDRVLLLLPLHFDGSVWEIFGPLLAGG------TLVLVPKFTLDPARLLDLIEK 219
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
K T++ VP + + L+
Sbjct: 220 YKVTVLYGVPTLLRLL---------------------------------------LKAPE 240
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS 489
S+R V + GG PL + +R G P+ YG TET +T +
Sbjct: 241 EKKYDLSSLRLV--------LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292
Query: 490 EWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
DP G +G P+P +K++ DE G P GE+ + G V GY N+P
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVL--DEEG--EPVPPGEVGELCIRGPGVARGYLNDPEL 348
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
T+E + E G + TGD+G+ DG LEI+ RK D VK+ GE I G++EA L+
Sbjct: 349 TAERF--VEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI-RGERIEPGEIEAVLLEHP 405
Query: 608 YVDNIMI 614
V +
Sbjct: 406 GVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 2e-68
Identities = 142/536 (26%), Positives = 207/536 (38%), Gaps = 103/536 (19%)
Query: 82 STMAALFEQSCKSHPQD---RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFD 138
T+A+L E++ + +P FLG+ L TY E+
Sbjct: 11 LTLASLLERAARRNPDRPALIFLGRGGRL------------------------TYRELDR 46
Query: 139 RACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSL 198
RA A+ L G R AIL E+ IAF R V + L L + L
Sbjct: 47 RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYIL 106
Query: 199 NETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEV 258
N+ LI ++ L AV+ +L + V+ + G + + +
Sbjct: 107 NDAGAKVLITSAEFAALLEAVAEALPVVLVVL------------LVGDADDRLPITLEAL 154
Query: 259 EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317
G D + +A ++YTSG+TGLPKGV++TH N++A AA I L
Sbjct: 155 AAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD 214
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
DV L++LPL H+ L I+ +G G TL + + + K T+++
Sbjct: 215 DVVLSWLPLFHIFGL----IVGLLAPLLG-GGTLVLLSPEPFDPEEVLWLIEKYKVTVLS 269
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
VP R L +
Sbjct: 270 GVPTFL---------------------------RELLD--------------NPEKDDDD 288
Query: 438 SVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
L +R ++ GGAPL + +RF I + YGLTET T + DD
Sbjct: 289 -----LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343
Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
G VG P+P +++V +GG P GEI V G NV GY+N P T+E +
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGG---EVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE 399
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
D W TGD+G V DG L I+ R KD++ GE I ++EA L V
Sbjct: 400 D----GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVA 450
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 1e-57
Identities = 167/660 (25%), Positives = 281/660 (42%), Gaps = 109/660 (16%)
Query: 126 GDYEWQ--TYGEVFDRACSFASGLVNFG----HNVDTRAAILAETCVEWFIAFQGCFRQS 179
G W TY + ++ A + G H+V IL EWFIA G
Sbjct: 2 GKDGWHTLTYKQYYEACRQAAKAFLKLGLERFHSV----GILGFNSPEWFIAAVGAIFAG 57
Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDS-KQLKKLSAVSSSLKTIKNVIYFENDGSE 238
V IY++ +A + ++ L+ D+ KQL+K+ A+ L +K +I + E
Sbjct: 58 GIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKE 117
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQ--NGVAVIMYTSGSTGLPKGV 293
K+ + S+ E +LG+ P +D + SQ N ++YTSG+TG+PKGV
Sbjct: 118 KEPNLY---------SWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGV 168
Query: 294 MITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
M++H NI TA A K + + ++YLPL+H+ AA+ + + I G +
Sbjct: 169 MLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLP--ISVGGCVY 223
Query: 353 MTDTSSKIKKGTKGDVSVL---KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF---- 405
+ KGT V L +PT VP ++++++E + + GL + +
Sbjct: 224 FAQPDA--LKGTL--VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAK 279
Query: 406 NIGYKRRLAAVEGSW--FGAWGLERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQ 462
+G + L + G + L + L VFK VR LG R + G AP+S ++
Sbjct: 280 GVGLETNLKLMGGESPPPMCFRLAKKL----VFKKVRKALGLDRCQKFFTGAAPISRETL 335
Query: 463 RF---INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
F +NI PI + YG++ET T S + + G +P C K+ + D G
Sbjct: 336 EFFLSLNI----PIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI- 390
Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
GEI + G +V GY N KT E +DE G W ++GD+G + DG L I
Sbjct: 391 --------GEICIWGRHVFMGYLNMEEKTEE--AIDEDG--WLHSGDLGFLDDDGFLYIT 438
Query: 580 DRKKDIVKLQHGEYISLGKVEAALISS-DYVDNIMIHADPFHNYCVALV------VPSHK 632
R K+++ GE + +E A+ + N M+ D + L + +
Sbjct: 439 GRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPETGE 498
Query: 633 ALEKWAHEA-------SIKYEDLSELCN-KAEAVNE-VQQALSKASTLVSRTEFFLSRRY 683
L+ EA +SE+ K V E +++ + + +
Sbjct: 499 PLDNLTEEAIEFCRLLGSHATTVSEILAGKDPLVYEAIEEGIKRVNK------------- 545
Query: 684 KTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
++ A K+ K+ I + + ++ G + +K+KR + K+KD++ LY
Sbjct: 546 -----EAISNAQKVQKWVI------LEKDFSVPGGELGPTMKLKRPVVAKKYKDEIDKLY 594
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-51
Identities = 155/610 (25%), Positives = 257/610 (42%), Gaps = 119/610 (19%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ +V D+A A+ L + G R AIL++ C EW IA + V +Y +L
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 192 DALIHSLNETQVTTLIC---DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
+ + + L + L D K + V L TI I F +
Sbjct: 68 ETIRYVLEHSDAKALFVGKLDDWDAMK-AGVPEGLPTI---ILFPYSTLKDHY------- 116
Query: 249 NWTVSSFSEVEKLGKRSPVDPS-LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
+ ++ L P+ LP +A I+YTSG+TG PKGVM++ G A
Sbjct: 117 -----KWDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKG 366
+I +D L+YLPLAH+ E E L +G + + +L DT +
Sbjct: 170 IEII-GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAA------- 218
Query: 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
D+ +PT+ +VP ++ + ++G++ K+ + L I
Sbjct: 219 DLQRARPTVFFSVPRLWTKFQQGILAKLPPE--KLNLLLKI------------------- 257
Query: 427 ERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
+ ++V K + LG + R G AP+ + +G PI + YG+TE A
Sbjct: 258 --PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAY 314
Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
ST + D +G VG P+P +K+ E G EI++ + +GY+ +P
Sbjct: 315 STLNYPGDRRIGTVGKPIPGVELKI---SEDG-----------EILIRSPGLMSGYYKDP 360
Query: 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
KT+E + D G W +TGD G++ DG L+I R K++ K G+Y++ +E L +
Sbjct: 361 EKTAEAFTED--G--WLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSA 416
Query: 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQAL 665
+ +V+ + + VALVV LSE + E EV+++L
Sbjct: 417 NPHVEQVCVVGSGLPQ-PVALVV-------------------LSEAADPLER-EEVEESL 455
Query: 666 SKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALK 725
+ TL ++L+ E + + ++ E WT E GL+T LK
Sbjct: 456 QQ--TLAKVN-------------------SELESHERLSALVVVKEAWTVENGLLTPTLK 494
Query: 726 IKREQLKAKF 735
IKR ++ +
Sbjct: 495 IKRNVVEKHY 504
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 4e-46
Identities = 128/514 (24%), Positives = 192/514 (37%), Gaps = 152/514 (29%)
Query: 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
A L E++ + P + +T GRK TY E+ + + FA
Sbjct: 2 ADLLERAARRFP-----------DRPALT-FFGRKL-----------TYAELDELSDRFA 38
Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
+ L G R A++ C ++ IA+ G + VV + L H LN++
Sbjct: 39 AYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAK 98
Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
LI SF + G
Sbjct: 99 VLIV-------------------------------------------AISFEDALASGAP 115
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS-DVYLAY 323
P+ P S + +AV+ YT G+TG+PKG M+TH N+VA I + + D +L
Sbjct: 116 LPL-PVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174
Query: 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLK------PTLMA 377
LPL H+ L + + G+T + ++VLK T+
Sbjct: 175 LPLFHIFGL-----TVNMLLGLRLGATNVLVPNFR--------PINVLKEIKRYRFTIFP 221
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
VP +++ L N ++ F
Sbjct: 222 GVPTLYNA------------------LLN----------------HPEFKKYD-----FS 242
Query: 438 SVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
S+R I GGAPL + ++RF GAP+ + YGLTET +T + D
Sbjct: 243 SLRLC--------ISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGERK 293
Query: 496 VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY 552
G +G P+P +K+V DEG +P GE+VV G V GY+N P +T+EV
Sbjct: 294 PGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346
Query: 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W TGDIG + DG I+DRKKD++
Sbjct: 347 TDG-----WLRTGDIGYMDEDGYFYIVDRKKDMI 375
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 3e-44
Identities = 100/377 (26%), Positives = 155/377 (41%), Gaps = 69/377 (18%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I+YTSG+TG PKGV+++H N++A A A+ I DV L+ LPL HV+
Sbjct: 2 PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGDVLLSVLPLFHVVGG---- 56
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
A+ G T+ + + + + + T++ VP ++D + K E
Sbjct: 57 -GSGLLGALLAGGTVVLYEGFPFPLSFLE-LIEQYRVTVLFGVPTLYDALA-----KAAE 109
Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
G L+ +R +I GG P
Sbjct: 110 DRG-----------YDLS-------------------------------SLRLLISGGEP 127
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDE 515
LS + GAPI + YGLTET ++ + + G VG PVP +++V +E
Sbjct: 128 LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVD-EE 186
Query: 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGC 575
G + GE+VV G V GY+NNP +T+ E G W+ TGD+G + +G
Sbjct: 187 GKPLPPGEV---GELVVRGPWVMKGYWNNPPETT--AAATEDG--WYRTGDLGYLDEEGY 239
Query: 576 LEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI--HADPFHNYCVALVV---PS 630
L I R KD++K+ GE + +VE+ L+ V + D + V P
Sbjct: 240 LYITGRSKDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPG 298
Query: 631 HKALEKWAHEASIKYED 647
AL + +
Sbjct: 299 ADALAEELKAHLRERLA 315
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 3e-44
Identities = 119/465 (25%), Positives = 186/465 (40%), Gaps = 94/465 (20%)
Query: 132 TYGEVFDRACSFASGLVNFG---HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
TY E+ A+GL G +V +L+ +E+ + F V T
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDV---VLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
+ + ++ I S+ +KL++++ + V+ DS G +
Sbjct: 91 YTPAEIAKQVKDSGAKLAITTSELAEKLASLAL-----EPVVLL-------DSADDGSAA 138
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+ E E V Q+ VA + Y+SG+TG KGVM+TH N++A A +
Sbjct: 139 IDDLLFADEPEP---PVVVIK----QDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLV 191
Query: 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTK 365
PN R DV L LP+ H+ L +++L A +G + + M D +
Sbjct: 192 AGEGPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAA--- 244
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
+ K T + VP I V+ L K+ I K L+++
Sbjct: 245 --IEKYKVTHLPVVPPI-------VL-------ALVKH--PIVDKYDLSSL--------- 277
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCA 484
+ + G APL + ++ F G +GQ YG+TE+
Sbjct: 278 ----------------------KQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315
Query: 485 GST--FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
+T DP G VG VP K+V + G S P GE+ V G V GY
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
NNP T+E +D+ G W +TGD+G DG L I+DR K+++K
Sbjct: 373 NNPEATAET--IDKDG--WLHTGDLGYFDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 6e-44
Identities = 119/496 (23%), Positives = 187/496 (37%), Gaps = 113/496 (22%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R A+ L G R A+ E+ A+ + + I L
Sbjct: 33 TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + + LN+ + ++ DS+ + L+A+ L T++ VI E DG
Sbjct: 93 EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIV-EGDGPAAPLAP-------E 144
Query: 252 VSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
V + E+ L S +N A ++YTSG+TG PKGV+++H N+ + A+
Sbjct: 145 VGEYEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW 202
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTDTSSKIKKGT 364
+ R DVYL +P+ HV + L AG + L + +T
Sbjct: 203 L-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIET-------- 253
Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
+ T AVP I+ + ++K R F +
Sbjct: 254 ------ERVTFFFAVPTIW----QMLLK----------------APR----AYFVDFSSL 283
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGL 479
R +I GGA L ++F G + Q YG+
Sbjct: 284 -----------------------RLVIYGGAALPPALLREFKEKF-----GIDLVQGYGM 315
Query: 480 TETCAGSTFS--EWDDPSV----GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----G 528
TET + E P G P+P ++V D+ G +P G
Sbjct: 316 TETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIV--DDDG-----DELPPDGGEVG 368
Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
EI+V G + GY+N P T+E W +TGD+G + DG L I DR KD++
Sbjct: 369 EIIVRGPWLMQGYWNRPEATAETIDGG-----WLHTGDVGYIDEDGYLYITDRIKDVII- 422
Query: 589 QHGEYISLGKVEAALI 604
GE I ++E AL
Sbjct: 423 SGGENIYPRELEDALY 438
|
Length = 521 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-40
Identities = 99/348 (28%), Positives = 144/348 (41%), Gaps = 88/348 (25%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I YTSG+TG PKG M+TH N++ +I D L +PL HV L
Sbjct: 4 PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-ARRLGLTEGDRTLVPVPLFHVFGLVL-G 61
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV-SVL------KPTLMAAVPAIFDRVREG 389
++ + G+TL + + K D + L + T + VP +F +
Sbjct: 62 VLAS----LTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIAL--- 105
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
LE +D S+R
Sbjct: 106 ------------------------------------LEHPDFDKFDLSSLR--------T 121
Query: 450 MICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPC 505
I GGAP+ + R I A I YG+TET T + DDP G VG P+P
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181
Query: 506 CYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+K+V +GG +P GEI V G++V GY+N+P T+E D G W
Sbjct: 182 VEVKIVD-PDGG------EVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDAD--G--WL 230
Query: 563 YTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
+TGD+G + DG L I+ R KD++ + GE I ++E AL++ V
Sbjct: 231 HTGDLGYMDEDGYLRIVGRIKDMII-RGGENIYPAEIEEALLTHPAVA 277
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 1e-38
Identities = 117/492 (23%), Positives = 178/492 (36%), Gaps = 103/492 (20%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
I+ + V +A V + + GE+ L + + + T+I L+KL
Sbjct: 33 NIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKL 92
Query: 217 SAV-SSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV------SSFSEVEKLGKRSPVDP 269
L ++Y E+ + IS + + P
Sbjct: 93 KLEGLVVLLEGVRIVYLED--------LRAKISKADKLKAFLAAKLPPALLRLFLAGAKP 144
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
P AVI++TSGS GLPKGV+++H N++A I +I DV L LPL H
Sbjct: 145 DDP-----AVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-LNTEDVLLGALPLFHA 198
Query: 330 LELAAESIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388
L ++ L G + Y +++ + K T++ P
Sbjct: 199 FGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL-------IRDYKATILCGTPTFLR---- 247
Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
GY R F S+R V
Sbjct: 248 -------------------GYARN------------------AHPEDFSSLRLV------ 264
Query: 449 FMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507
+ G L + F G I + YG TE + + G VG P+P
Sbjct: 265 --VAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 508 IKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYT 564
+++VS + + + +P GE ++V G NV +GY NN KTSEV + + W+ T
Sbjct: 322 VRIVSPE------THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDG---WYDT 372
Query: 565 GDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCV 624
GDIG++ DG L I+ R K K+ GE +SL VE L P +
Sbjct: 373 GDIGKIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEELL----------SEILPEDSLHA 421
Query: 625 ALVVPSHKALEK 636
A+ VP K EK
Sbjct: 422 AVEVPDEKKGEK 433
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 103/350 (29%), Positives = 146/350 (41%), Gaps = 106/350 (30%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I+YTSG+TG PKGVM+TH N++A A + DVYL PL H +
Sbjct: 3 PALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHA------A 55
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD-VSVL------KPTLMAAVPAIFDRVREG 389
L A+ G T+ + K D +VL + T VP +F
Sbjct: 56 GGLFLLPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMF------ 100
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
+RL + + S+R
Sbjct: 101 ---------------------QRLLRLPD------------FARYDLSSLR--------L 119
Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVP 504
+I G AP+ A+ +R + G Q YG+TET +T +D SVGR PVP
Sbjct: 120 IIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR---PVP 176
Query: 505 CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+++V DE G + +P GEIVV G V AGY+N P T+E + G W
Sbjct: 177 GVEVRIV--DEDG-----RELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR---DG--W 224
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG------KVEAALIS 605
+TGD+G + DG L I+DRKKD++ IS G +VE L++
Sbjct: 225 LHTGDLGYLDEDGYLYIVDRKKDMI-------ISGGENIYPAEVENVLLA 267
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-34
Identities = 135/582 (23%), Positives = 236/582 (40%), Gaps = 138/582 (23%)
Query: 132 TYGEVFDRACSFASGLVNF-GHNVDTRA-------------AILAETCVEWFIAFQGCFR 177
TYG F + SF+ L + G + + + + W +A C
Sbjct: 93 TYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACML 152
Query: 178 QSITVVTIYSSLGEDALIHSLNETQ----------VTTLICDSKQ---LKKLSAVSSSLK 224
+T + ++S D ++ LNET+ V L+ + LKKL + + +K
Sbjct: 153 SGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIK 212
Query: 225 TIKNVIYFE--NDGSE-KDSGVSGGISNWTVSSFS-------------EVEKL------- 261
+ + I E N+GS ++G + S + EKL
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK 272
Query: 262 ------------------GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
K + + + I+YTSG++G PKGVM+++ N+
Sbjct: 273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNL--- 329
Query: 304 AAAIKTLIP----------NPGRSDVYLAYLPLAHVLE--LAAESIMLCAGCAIGYGSTL 351
T++P NP +L+YLP++H+ E +A S ML G T+
Sbjct: 330 ---YNTVVPLCKHSIFKKYNP---KTHLSYLPISHIYERVIAYLSFML--------GGTI 375
Query: 352 TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE----KGGLTKNLFNI 407
+ SK D+ K ++A VP +F+R+ ++ ++ K L K + ++
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432
Query: 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467
R+ + F + LE + + ++ + + ++ GG LS +++
Sbjct: 433 ---RK--SNNNGGFSKF-LEGITH---ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSV 483
Query: 468 CMGAPIGQAYGLTETCAGSTF----SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK 523
+ Q YGLTET G F + + S+G GP P K+ +W+ YK +D
Sbjct: 484 LLNVNYYQGYGLTET-TGPIFVQHADDNNTESIG--GPISPNTKYKVRTWET--YKATDT 538
Query: 524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
P+GE+++ ++ +GYF +T + D +F TGDI Q+ +G L +DR K
Sbjct: 539 L-PKGELLIKSDSIFSGYFLEKEQTKNAFTEDG----YFKTGDIVQINKNGSLTFLDRSK 593
Query: 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVA 625
+VKL GEYI E ++++ Y F N+CV
Sbjct: 594 GLVKLSQGEYI-----ETDMLNNLYSQ------ISFINFCVV 624
|
Length = 746 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-32
Identities = 107/382 (28%), Positives = 158/382 (41%), Gaps = 76/382 (19%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A+I+YTSG+TG PKGV++THGN+ A A A+ SDV L LPL HV
Sbjct: 90 PALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLHHV-----HG 143
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP-TLMAAVPAIFDRVREGVVKKVE 395
+ C + G+++ + + + +L T+ VP I
Sbjct: 144 LFNALHCPLWAGASVEFL---PRFDPQERDALRLLPRITVFMGVPTI------------- 187
Query: 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
Y R L E F A +R + G A
Sbjct: 188 -------------YTRLLEHYE------------------FDDAAAAAARNLRLFVSGSA 216
Query: 456 PLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
L +R+ G + + YG+TET + + G VG P+P +++V +
Sbjct: 217 ALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVD-E 274
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+GG + + GEI V G NV + Y+N P T+E + E G WF TGD+G V DG
Sbjct: 275 DGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAF--TEDG--WFKTGDVGVVDEDG 328
Query: 575 CLEIIDRKK-DIVKLQHGEY-ISLGKVEAALISSDYVDNIMIHADPFHNY---CVALVVP 629
I+ RK DI+K G Y +S ++E AL+ V + + P ++ VA+VVP
Sbjct: 329 YYRILGRKSDDIIK--SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVP 386
Query: 630 ------SHKALEKWAHEASIKY 645
+ L WA E Y
Sbjct: 387 EAGAALTLAELRAWAREKLAPY 408
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 5e-32
Identities = 106/497 (21%), Positives = 174/497 (35%), Gaps = 108/497 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E+ +RA A L G R A+L E E +A + V + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
+ L L + L+ DS + + +G+ +
Sbjct: 61 AERLAFILEDAGARLLLTDS------------------------ALASRLAGLVLPVILL 96
Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
+ ++ P D + + +A ++YTSGSTG PKGV++TH ++V A +
Sbjct: 97 DPLELAALDDAPAPPPPD-APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155
Query: 311 IPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
D L + L+ V E+ L AG + + + +
Sbjct: 156 YGLDPD-DRVLQFASLSFDASVEEIFGA---LLAG-----ATLVVPPEDEERDDAALLAA 206
Query: 368 V-SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
+ + T++ P++ +
Sbjct: 207 LIAEHPVTVLNLTPSLLALL---------------------------------------- 226
Query: 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS 486
S+R V+ + G A A R+ GA + YG TET S
Sbjct: 227 --AAALPPALASLRLVI-------LGGEALTPALVDRWRARGPGARLINLYGPTETTVWS 277
Query: 487 TFSEWDDPSVGR-----VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVT 538
T + D R +G P+ + ++ D+ +P+P GE+ +GG V
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVL--DDDL-----RPVPVGVVGELYIGGPGVA 330
Query: 539 AGYFNNPGKTSEVYKVD----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
GY N P T+E + D G + TGD+ + PDG LE + R D VK+ G I
Sbjct: 331 RGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRI 389
Query: 595 SLGKVEAALISSDYVDN 611
LG++EAAL+ V
Sbjct: 390 ELGEIEAALLRHPGVRE 406
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-31
Identities = 120/515 (23%), Positives = 198/515 (38%), Gaps = 113/515 (21%)
Query: 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
+ G TY + + R A+ L + G R A LA +
Sbjct: 17 RTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAV 76
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
+ T+ L + + + +N + + D L L A++ L T+K V+ +++ + S
Sbjct: 77 LHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETS 136
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
V ++ E+ L + SP P L +N A + YTSG+TG PKGV+ +H +
Sbjct: 137 LP-------NVYAYEEL--LEEESPEYEWPELD-ENTAAGLCYTSGTTGNPKGVVYSHRS 186
Query: 300 IV--ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
+V A+A+ + SD L +P+ HV + Y +T+
Sbjct: 187 LVLHTLASALPDSL-GLSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAK-- 232
Query: 358 SKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYK 410
+ G D + L K T+ A VP I+ GL L
Sbjct: 233 -LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW--------------LGLLNYL------ 271
Query: 411 RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470
++ L R ++ G A + ++ G
Sbjct: 272 --------------------------EANGKDLSSLRRVVVGGSALPRSLIEKLEE--RG 303
Query: 471 APIGQAYGLTETCAGSTFS-------EWDDPSVGRV----GPPVPCCYIKLVSWDEGGYK 519
+ A+G+TET T S + + + G PVP +++V D+ G
Sbjct: 304 VEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV--DDEG-- 359
Query: 520 TSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+P GE+VV G VT Y+ +P KT E+ G WF TGD+ + DG
Sbjct: 360 ---NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL---TRDG--WFRTGDVAVIDEDG 411
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
++I DR KD++K GE+IS ++E AL++ V
Sbjct: 412 YIQITDRAKDVIK-SGGEWISSVELENALMAHPAV 445
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 7e-29
Identities = 122/504 (24%), Positives = 190/504 (37%), Gaps = 133/504 (26%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
+ + T+ E+ + S A L G R A+L + +E + + V +
Sbjct: 24 EEKKV-TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L+ L++ +V LI D KL S
Sbjct: 83 NTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK---------------------- 120
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN--IVAT 303
F+E+ K + VA IMYTSG+TG PKGV+ T+GN A
Sbjct: 121 ---------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAV 171
Query: 304 AAAIKTLIPNPGRS--DVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDT--S 357
+A+ N G + D +LA +P+ H+ L + S++ YG + + + +
Sbjct: 172 GSAL-----NLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDA 218
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
KI K + T+++ V +
Sbjct: 219 EKINKLLQTG----GVTIISVVSTM----------------------------------- 239
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGR-----IRFMICGGAPLSADSQRFINICM--G 470
L+R+L LG R M+ GG P + C G
Sbjct: 240 --------LQRLL----------ERLGEGTYPSSFRCMLLGGGPAPKP---LLEQCKEKG 278
Query: 471 APIGQAYGLTETCAG-STFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
P+ Q+YG+TET + T S E +G G P+ C +K+ +G P G
Sbjct: 279 IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDG---VVVPPFEEG 333
Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
EIVV G NVT GY N T E + + G WF TGDIG + +G L ++DR+ D++ +
Sbjct: 334 EIVVKGPNVTKGYLNREDATRETF---QDG--WFKTGDIGYLDEEGFLYVLDRRSDLI-I 387
Query: 589 QHGEYISLGKVEAALISSDYVDNI 612
GE I ++E L+S V
Sbjct: 388 SGGENIYPAEIEEVLLSHPGVAEA 411
|
Length = 483 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-29
Identities = 111/466 (23%), Positives = 172/466 (36%), Gaps = 146/466 (31%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I++TSGSTG PK V+ T GN +A+A + D +L LPL HV LA
Sbjct: 79 PATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVSGLA--- 134
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
I++ + G L + D + + + T ++ VP
Sbjct: 135 IVM--RSLL-AGGALVLPD-KFDAEAIAE-ALENHGVTHISLVPTQ-------------- 175
Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML--WDAIVFKSVRAVLGGRIRFMICGG 454
L+R+L A S+RAVL GG
Sbjct: 176 -----------------------------LQRLLESLGARWLSSLRAVL--------LGG 198
Query: 455 APLSADSQRFINIC--MGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPVPCCYIKL 510
AP+ + G P+ YG+TET + + DD +G VG P+P +++
Sbjct: 199 APIPPS---LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRI 255
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
V+ + GEI+V G ++ GY G T +DE G WF+TGD+G +
Sbjct: 256 VNPQD------------GEILVRGPSLFLGYLPQGGLTPP---LDEDG--WFHTGDLGYL 298
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI--HADP-FHNYCVALV 627
+G L ++ R+ D++ + GE I ++EA L+ V+ + D + VA V
Sbjct: 299 DAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFV 357
Query: 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTL 687
VP+ + V E+Q L
Sbjct: 358 VPNDDPVS----------------------VEELQAFL---------------------- 373
Query: 688 CLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733
A KL K++ P + +PE A+ KI R L+
Sbjct: 374 ------ADKLAKYKRPKRWYPLPE------LPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-28
Identities = 89/339 (26%), Positives = 135/339 (39%), Gaps = 85/339 (25%)
Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-V 319
G S V P+ + VA+I+YTSG+TG PKG +TH N+ A AA K +P G
Sbjct: 205 GGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264
Query: 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS------SKIKKGTKGDVSVLKP 373
LA LP+ H A + LC A+ G L + +KK P
Sbjct: 265 VLAALPMFH-----AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP--------P 311
Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
T + VP ++++ + + EE+G
Sbjct: 312 TWLPGVPPLYEK----IAEAAEERG----------------------------------- 332
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSE 490
+ +R G L + G + + YGLTET G+ S
Sbjct: 333 VDLSG--------VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS- 383
Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
DD G VG P P +++V + D+ MP GE++V G V GY+N P +
Sbjct: 384 -DDRRPGYVGVPFPDTEVRIVDPE-----DPDETMPDGEEGELLVRGPQVFKGYWNRPEE 437
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
T++ + WF TGD+ + DG + I+DR K+++
Sbjct: 438 TAKSFLDG-----WFRTGDVVVMEEDGFIRIVDRIKELI 471
|
Length = 573 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 58/235 (24%), Positives = 91/235 (38%), Gaps = 22/235 (9%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
+ A G + T+ ++ +A A GL G A+++ +E+
Sbjct: 2 LIDADTGTEL-----------TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPP 50
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
F GC V S D L H L ++ + CD +L K+ + L + +I
Sbjct: 51 VFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRII 110
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ GV +E E + A ++Y+SG+TGLP
Sbjct: 111 VLDS----APDGVLRIEDLLEPRLGAEDEFRPTPLIDGK-----DDTAALLYSSGTTGLP 161
Query: 291 KGVMITHGNIVATAA-AIKTLIPNP-GRSDVYLAYLPLAHVLELAAESIMLCAGC 343
KGVM++H NI+A + TL NP +DV L +LP H L L G
Sbjct: 162 KGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGA 216
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 137/632 (21%), Positives = 223/632 (35%), Gaps = 159/632 (25%)
Query: 129 EWQ--TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI- 185
EW+ TY E + + A L++ G + + IL+ +E + + V +
Sbjct: 22 EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81
Query: 186 --YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN--------D 235
YS L +D KL + L ++ E+
Sbjct: 82 PAYSLLSKD--------------------FAKLRHIFDLLT--PGAVFAEDGAAFARALA 119
Query: 236 GSEKDSG---VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLP 290
G +F+ + + VD + + VA ++TSGSTGLP
Sbjct: 120 ALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLP 179
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGS 349
K V+ TH + A A I P V + +LP H + G
Sbjct: 180 KAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF--GGNHNF---NMVLYNGG 234
Query: 350 TLTMTD---TSSKIKKGTKG--DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
TL + D ++ + +VS PT+ VP F+ + V +E L +
Sbjct: 235 TLYIDDGKPVPGLFEETLRNLREVS---PTVYFNVPKGFEML----VDALERDAALRRRF 287
Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
F +RL + ++ L + +WD + +VR G RI
Sbjct: 288 F-----KRLRLL---FYAGAALPQDVWDRLQALAVRTT-GERIPMT-------------- 324
Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
G TET +TF W G +G P P +KLV
Sbjct: 325 ----------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV------------- 361
Query: 525 MPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ-VYPDGCLEIID 580
P G E+ V G NVT GY+ +P T+E + DE G ++ GD + V PD D
Sbjct: 362 -PNGGKLEVRVKGPNVTPGYWRDPELTAEAF--DEEG--FYRIGDAVRFVDPD------D 410
Query: 581 RKKDIV---------KLQHGEYISLGKVEAALIS--SDYVDNIMIHADPFHNYCVALVVP 629
++ +V KL G ++S+G + AL++ + V + ++ A + LV P
Sbjct: 411 PERGLVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVV-AGHDRDEIGLLVFP 469
Query: 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL 689
+ A + A A ED+ EA+ A ++A+T +R
Sbjct: 470 NLAACRRLAGLAEASAEDVLAHPAVREALAARLAAHNRAATGSTR--------------- 514
Query: 690 QVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 721
+ L+ EP + +AG +T
Sbjct: 515 -------------VTRALLLAEPPSIDAGEIT 533
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-26
Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+R + G APLS + Q I Q YG+TET +T + D G VG VP
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
K+V DE G S P RGE+ V G + GY NNP T E +DE G W +TG
Sbjct: 325 VEAKIV--DEDG-GKSLGPNERGELCVKGPQIMKGYLNNPEATKET--IDEDG--WLHTG 377
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN 611
DIG DG I+DRKK+++K + G + ++EA L+ V +
Sbjct: 378 DIGYFDEDGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVAD 422
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 99/499 (19%), Positives = 164/499 (32%), Gaps = 106/499 (21%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
E TYG++ A+ L + G R AI E IA R +
Sbjct: 37 LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS---SLKTIKNVIYFENDGSEKDSG 242
L +A+ + + LI D + ++ + + +V+ G D
Sbjct: 96 SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEA 155
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-V 301
V S E E L DP ++YTSG+TG PKG++ +HG V
Sbjct: 156 VE------KASEKFEFEPL---PADDP--------LFLLYTSGTTGKPKGIVHSHGGYLV 198
Query: 302 ATAAAIKT---LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGY-GSTLTMTD 355
K L+P D + + L + S + + Y G +
Sbjct: 199 EHRLTAKFHGDLLPG----DRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPE 254
Query: 356 TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR-EGVVKKVEEKGGLTKNLFNIGYKRRLA 414
+ + K T+ P R+ G+ +
Sbjct: 255 RLWEA-------LEKYKVTIFGTSPTFLRRLMKLGLGEP--------------------- 286
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
+D S+R + G PL+ ++ + +G I
Sbjct: 287 ----------------YD---LSSLRVLG--------SAGEPLNPEAFEWFYSALGVWIL 319
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVV 532
YG TET G + G G P+P + D+ G P+P GE+VV
Sbjct: 320 DIYGQTETGMG-FIAGRPPVKNGSSGLPLPG--YAVRRVDDEG-----NPVPPGVGELVV 371
Query: 533 GGFN--VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQH 590
+ Y+N+P + E Y W+ TGD + DG + R D++K+
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYFGR-----WYRTGDWAERDEDGYFWLHGRSDDVIKVS- 425
Query: 591 GEYISLGKVEAALISSDYV 609
G+ I ++E+ L++ V
Sbjct: 426 GKRIGPLEIESVLLAHPAV 444
|
Length = 528 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 99/482 (20%), Positives = 176/482 (36%), Gaps = 118/482 (24%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ ++ A A L G +R A++ + +E + C + + + L E
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + L + V L+ DS E + DS
Sbjct: 61 NERTNQLEDLDVQLLLTDSL--------------------LEEKDFQADS---------- 90
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ---NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
++++ + SL + + +A +M+TSG+TG PK V T N A+A K
Sbjct: 91 ------LDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK 144
Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
+ D +L LPL H+ L+ + + G+TL + D +++ + +
Sbjct: 145 ENLGF-TEDDNWLLSLPLYHISGLSI--LFRW----LIEGATLRIVDKFNQLLEMIANE- 196
Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
+ T ++ VP L R
Sbjct: 197 ---RVTHISLVPTQ-------------------------------------------LNR 210
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-T 487
+L + +++R +L G G+ + A G PI +YG+TETC+ T
Sbjct: 211 LLDEGGHNENLRKILLG--------GSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
+ + VG P+ IK+ D GEI+V G N+ GY
Sbjct: 262 ATPEMLHARPDVGRPLAGREIKI---------KVDNKEGHGEIMVKGANLMKGYLYQ--- 309
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
+++G WF TGDIG++ +G L ++ R+ D++ + GE I ++E L
Sbjct: 310 GELTPAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLI-ISGGENIYPEEIETVLYQHP 366
Query: 608 YV 609
+
Sbjct: 367 GI 368
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 2e-24
Identities = 130/515 (25%), Positives = 205/515 (39%), Gaps = 91/515 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ D+ FA+ L G R AI+ C + I + G VV E
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--------------IKNVIYFENDGS 237
L + L+++ ++C +++ V S+ K KN++Y
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170
Query: 238 EKDSGVSGGISNWTVSSFSEVEK---LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
+ + V S T+ ++ VEK G P DP +N +A++ YT G+TG PKGVM
Sbjct: 171 QSNLVVKVSESE-TIHLWNSVEKEVNTGVEVPCDP----ENDLALLQYTGGTTGFPKGVM 225
Query: 295 ITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
+TH N+V+ T ++ L +V L LP HV YG T M
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMTAVM 268
Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL 413
++S+++ M +P FD K +F K ++
Sbjct: 269 -------------NLSIMQGYKMVLIPK-FD----------------MKMVFEAIKKHKV 298
Query: 414 AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473
G A + L ++ + K IR I G APL + Q G +
Sbjct: 299 TLFPG----APTIYIALLNSPLLKEYDI---SSIRACISGSAPLPVEVQEKFETVTGGKL 351
Query: 474 GQAYGLTET--CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV 531
+ YGLTE+ S F W+ G +G P P ++S + G + P GEIV
Sbjct: 352 VEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETG---EALPPGEIGEIV 407
Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
V G + GY+N P +T+ V + W +TGD+G + DG + DRKKD++ + G
Sbjct: 408 VKGPQIMKGYWNKPEETAAVLQDG-----WLHTGDVGYMDEDGFFYVKDRKKDMI-VASG 461
Query: 592 EYISLGKVEAALISSDYVDNIMIHA--DPFHNYCV 624
+ +VE L + V ++ DP+ V
Sbjct: 462 FNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETV 496
|
Length = 563 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 103/486 (21%), Positives = 163/486 (33%), Gaps = 103/486 (21%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
+ TY E+ RA A L++ G AILA+ +E +A + V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L +++ T L+ + L L + ++ SE
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQAH----LRVDDVGL----PGLALDDALSEIPDTD-- 357
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
P+ +L +A I+YTSGSTG PKGV I H +
Sbjct: 358 --------------------PIPQALLGDA-LAYIIYTSGSTGQPKGVRIEHRALANLLN 396
Query: 306 AIKTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
D LA L A V E+ L G + L D ++
Sbjct: 397 DAGARFGLDAD-DRVLALASLSFDASVFEIFG---ALLEGARLVLAPALLQVDPAA---- 448
Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
+ T++ VP
Sbjct: 449 -LLELLEAQGITVLLLVPL----------------------------------------- 466
Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD--SQRFINICMGAPIGQAYGLT 480
L R+L A + + + R+R ++ GG L + + + YG T
Sbjct: 467 ---LLRLLLLAALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPT 522
Query: 481 ETCAGSTFSEWDDPSVGRV--GPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNV 537
E + RV G PV + ++ D+G P+ GE+ + G +
Sbjct: 523 EATLDAPSFPISAELESRVPIGRPVANTQLYIL--DQGL---RPLPLGVPGELYIAGLGL 577
Query: 538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
GY N P T+E + + TGD+ + DG LE + RK VK++ G I LG
Sbjct: 578 ALGYLNRPDLTAERFIALR----LYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELG 632
Query: 598 KVEAAL 603
++EAAL
Sbjct: 633 EIEAAL 638
|
Length = 642 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 101/379 (26%), Positives = 148/379 (39%), Gaps = 123/379 (32%)
Query: 266 PVDPSLP------------------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DPS P + +A ++YTSGSTG PKGV ++H +V ++
Sbjct: 66 PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSM 125
Query: 308 KTLIPNPGRSDVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
P G SD LA ++ VLEL + G+T+ + T
Sbjct: 126 ARR-PGLGASDRLLAVTTISFDISVLELLLPLL---------SGATVVIASAE------T 169
Query: 365 KGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
D L + T+M A PA
Sbjct: 170 VRDPERLARLIADERITIMQATPA------------------------------------ 193
Query: 418 GSWFGAWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAP 472
+W RML W +S+ A +CGG L D ++R ++ GA
Sbjct: 194 -TW-------RMLLAAGWRGR--ESLTA---------LCGGEALPRDLAERLLS--TGAE 232
Query: 473 IGQAYGLTETCAGSTFS--EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--- 527
+ YG TET ST + D V +G P+ + ++ DE +P+P
Sbjct: 233 LWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVL--DEDL-----QPVPPGVP 284
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584
GE+ +GG V GY P T+E + D + G + TGD+ + PDG LE + R D
Sbjct: 285 GELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADD 344
Query: 585 IVKLQHGEYISLGKVEAAL 603
VK+ G I LG++EAAL
Sbjct: 345 QVKI-RGFRIELGEIEAAL 362
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 78/314 (24%), Positives = 120/314 (38%), Gaps = 61/314 (19%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAE 335
+A +T G+TG PK +H N VA A L PG DV L LPL HV
Sbjct: 4 LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG--DVLLNGLPLFHVGGAIVT 61
Query: 336 SIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
+ L G + + + + + V + TL++AVP +
Sbjct: 62 GLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTV------------ 107
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
LAA+ L+ L DA + +R+ + G
Sbjct: 108 ------------------LAAL---------LQVPLGDADISS---------LRYALTGA 131
Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSW 513
APL + R G P+ + YG+TE S + G VG +P +++
Sbjct: 132 APLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKL 191
Query: 514 DEGGYKTSD-KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
D GG D P G + + G NV GY N + ++++ W TGD+G++
Sbjct: 192 DAGGALGRDCAPGEVGVLAIRGPNVFPGYLN--DAHNAGARLEDG---WLNTGDLGRIDA 246
Query: 573 DGCLEIIDRKKDIV 586
DG L + R KD++
Sbjct: 247 DGYLWLTGRAKDLI 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 128/494 (25%), Positives = 195/494 (39%), Gaps = 88/494 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY + +R + ASGL G R AI + +E A G V I L
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + H L + V L+ S++L L ++ +I S G
Sbjct: 87 EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIV--GDPAHASEGHPGEE--- 141
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+S+ ++ LG P P + S +A I+YTSGSTG PKGV+++H N+VA A ++ T +
Sbjct: 142 PASWPKLLALGDADPPHPVIDSD--MAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199
Query: 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVS 369
N P D LA LPL + YG + LT G
Sbjct: 200 ENRPD--DRLLAVLPL-----------------SFDYGFNQLTTAFYV--------GATV 232
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
VL L+ R+ V+K +E K G+T LAAV W L ++
Sbjct: 233 VLHDYLL---------PRD-VLKALE-KHGITG----------LAAVPPLWAQ---LAQL 268
Query: 430 LWDAIVFKSVR--AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
W S+R GG + A LS N A + YGLTE ST
Sbjct: 269 DWPESAAPSLRYLTNSGGAMP-----RATLSRLRSFLPN----ARLFLMYGLTEAFR-ST 318
Query: 488 F--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
+ E D +G +P + LV ++G + GE+V G V GY+N+P
Sbjct: 319 YLPPEEVDRRPDSIGKAIPNAEV-LVLREDGSECAPGEE---GELVHRGALVAMGYWNDP 374
Query: 546 GKTSEVYKVDER--------GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
KT+E ++ + ++GD + +G L + R+ +++K G +S
Sbjct: 375 EKTAERFRPLPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432
Query: 598 KVEAALISSDYVDN 611
+VE ++ V
Sbjct: 433 EVEEVAYATGLVAE 446
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 127/591 (21%), Positives = 222/591 (37%), Gaps = 133/591 (22%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVT 184
G + TY E +R + A L++ G + + IL+ +E +A +
Sbjct: 65 GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL-AAMYAGVPYAP 123
Query: 185 I---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG----- 236
+ YS + +D KL V L+ + + F +DG
Sbjct: 124 VSPAYSLVSQD--------------------FGKLRHV---LELLTPGLVFADDGAAFAR 160
Query: 237 ---SEKDSGV-----SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGS 286
+ + V G + + F+ + + VD + + +A ++TSGS
Sbjct: 161 ALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220
Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAI 345
TGLPK V+ TH + A + P V + +LP H + G +
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF--GGNHNL---GIVL 275
Query: 346 GYGSTLTMTD---TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402
G TL + D T + T ++ + PT+ VP + E +V +E L +
Sbjct: 276 YNGGTLYIDDGKPTPGGFDE-TLRNLREISPTVYFNVPKGW----EMLVPALERDAALRR 330
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
F + ++ ++ L + +WD + + A G RIR M
Sbjct: 331 RFF--------SRLKLLFYAGAALSQDVWDRL-DRVAEATCGERIRMM------------ 369
Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
G+TET +TF+ G +G P P C +KLV GG
Sbjct: 370 ------------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGG----- 410
Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQ-VYPDGCLEIIDR 581
+ E+ V G NVT GY+ P T+E + DE G ++ +GD + V P D
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAF--DEEG--YYRSGDAVRFVDPA------DP 456
Query: 582 KKDIV---------KLQHGEYISLGKVEAALIS--SDYVDNIMIHADPFHNYCVALVVPS 630
++ ++ KL G ++S+G + A +S + V +++I + LV P+
Sbjct: 457 ERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVI-TGHDRDEIGLLVFPN 515
Query: 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK-------ASTLVSR 674
A + A + L+E+ ++ L++ +ST V+R
Sbjct: 516 LDACRRLAGLLA--DASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVAR 564
|
Length = 614 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 98/377 (25%), Positives = 146/377 (38%), Gaps = 115/377 (30%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A I ++SGSTG PKGV++TH N++ A I+ DV+L+++PL H + L
Sbjct: 109 AFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEIT--SEDVFLSWMPLTHDMGL---- 162
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
IG+ T T + + + L P ++ + K +
Sbjct: 163 --------IGFHLTPTALGINQYL----------MPTRLFIRRPLLW-------LDKASQ 197
Query: 397 -KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
+ + + N GYK L + W L SVR +I GA
Sbjct: 198 HRATILSSP-NFGYKYLLKHFKTEKIIDWDL----------SSVR---------LIFNGA 237
Query: 456 -PLSAD-SQRFINICMGAPIGQA-------YGLTETCAGSTFSEWDDP----SVGR---- 498
P+SAD + F+ AP G YGL E +F + +P + R
Sbjct: 238 EPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLK 295
Query: 499 --------------------VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
VG P+ C I++V D+ G D+ + G I + G NVT
Sbjct: 296 VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV--DDAGEVLPDRTI--GHIQIKGDNVT 351
Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV------------ 586
+GY+NNP T + D W TGD+G + +G L I R KDI+
Sbjct: 352 SGYYNNPEATKKSITPDG----WLKTGDLGFLR-NGRLVITGRAKDIIIVNGQNYYPHDI 406
Query: 587 --KLQHGEYISLGKVEA 601
+ E I LG+V A
Sbjct: 407 ERVAEQVEGIKLGRVAA 423
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-22
Identities = 116/492 (23%), Positives = 186/492 (37%), Gaps = 117/492 (23%)
Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E FA+ L+ R A++ C+++ IA G R +TVV +
Sbjct: 52 TYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYT 111
Query: 191 EDALIHSLNETQVTTLI-----CDSKQ---------------------LKKLSAVSSSLK 224
L H L ++ + L+ + Q K + V+ +K
Sbjct: 112 PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVK 171
Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
+K ++ + ++G I F E LG++ + + +A + YT
Sbjct: 172 YVKKLV--------PEYRINGAIR------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESI--M 338
G+TG+ KG M+TH N+VA + G+ +V + LPL H+ L A + M
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFM 277
Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398
GC + M G V LK T A +
Sbjct: 278 KIGGCNHLISNPRDM-----------PGFVKELKKTRFTAFTGV---------------- 310
Query: 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
LFN L G +D I F S++ LGG G A
Sbjct: 311 ---NTLFN-----GLLNTPG------------FDQIDFSSLKMTLGG-------GMAVQR 343
Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLVSWDEGG 517
+ ++R+ + G + +AYGLTET + + G +G P+P S D
Sbjct: 344 SVAERWKQV-TGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIP-------STDACI 395
Query: 518 YKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
+ + GEI + G V GY+ P +T++V +D G W +TGDI ++ G
Sbjct: 396 KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV--MDADG--WLHTGDIARMDEQG 451
Query: 575 CLEIIDRKKDIV 586
+ I+DRKKD++
Sbjct: 452 FVYIVDRKKDMI 463
|
Length = 560 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 4e-22
Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---GRVGPP 502
R+RF+ APL + G P+ +AYG+TE A S P V G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
+ ++ D+ G +P+P GEIV+ G NVTAGY NNP E ++
Sbjct: 178 A-GVEVAIL--DDDG-----RPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDG---- 225
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
WF TGD+G + DG L + R K+++ + GE IS +VE L+ V
Sbjct: 226 -WFRTGDLGYLDEDGYLFLTGRIKELIN-RGGEKISPREVEEVLLRHPAVA 274
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 8e-22
Identities = 105/358 (29%), Positives = 145/358 (40%), Gaps = 80/358 (22%)
Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI----KTLIPNPGR 316
V + Q+ VA IMY+SG+TG KGV++TH N++A + PG
Sbjct: 184 KEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGS 243
Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSKIKKGTKGDVS---V 370
+VYLA LP+ H+ L+ + L + GST+ + D S +K + V+ V
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGL-----LSLGSTIVVMRRFDASDMVKVIDRFKVTHFPV 298
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
+ P LMA + KK + G
Sbjct: 299 VPPILMA------------LTKKAKGVCGE------------------------------ 316
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST-- 487
V KS++ V CG APLS Q F+ Q YG+TE+ A T
Sbjct: 317 ----VLKSLKQV--------SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG 364
Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
F+ VG P K+V W G P GE+ + G V GY NNP
Sbjct: 365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKA 421
Query: 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T +D+ G W TGDI DG L I+DR K+I+K + G I+ +EA LIS
Sbjct: 422 TQS--TIDKDG--WLRTGDIAYFDEDGYLYIVDRLKEIIKYK-GFQIAPADLEAVLIS 474
|
Length = 560 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 4e-21
Identities = 113/485 (23%), Positives = 187/485 (38%), Gaps = 99/485 (20%)
Query: 125 LGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV 183
+ + E TY ++ + A+ L+ R AIL++ +E+ + + V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 184 TIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243
+ L E+ LI L ++ T L + K ++ S++ K S V
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVE----KTFQNMALSMQ--------------KVSYV 123
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
IS ++S E+E R + +++ +I YTSG+TG PKG ++T N+
Sbjct: 124 QRVIS---ITSLKEIED---RKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWN 177
Query: 304 AAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
A T + D + LPL H+ + L A + AG I T S I+
Sbjct: 178 ALN-NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF-AGGVIIVPRKFEPTKALSMIE 235
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
K K T++ VP I + T NL ++
Sbjct: 236 KH--------KVTVVMGVPTIHQALINCSKF-------ETTNLQSV-------------- 266
Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLT 480
R ++ GGAP + + FI+ G GQ +G+T
Sbjct: 267 ------RWFYN--------------------GGAPCPEELMREFID--RGFLFGQGFGMT 298
Query: 481 ETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
ET +D VG +G PV C +L+ ++ + GE+++ G NV
Sbjct: 299 ETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV----EVGEVGELLIRGPNVM 354
Query: 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK 598
Y+N P T E + W TGD+ +V DG + I+ RKK+++ + GE I +
Sbjct: 355 KEYWNRPDATEETIQDG-----WLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLE 408
Query: 599 VEAAL 603
VE +
Sbjct: 409 VEQVI 413
|
Length = 496 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-19
Identities = 124/517 (23%), Positives = 187/517 (36%), Gaps = 110/517 (21%)
Query: 112 VTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA---ETCVEW 168
VT S R+ +T E D S A+GL+ G AI A + +EW
Sbjct: 25 VTISGNRR-----------RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEW 73
Query: 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIK 227
+A C + + S E ++ + L+ D + L ++
Sbjct: 74 LLAV-ACAGGIVAPLNYRWSFEEAKS--AMLLVRPVMLVTDETCSSWYEELQNDRLPSLM 130
Query: 228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLP---SQNGVAVIMYTS 284
++ E+ S ++ SF E L +R+ L + + +I +TS
Sbjct: 131 WQVFLESPSSSVFIFLN---------SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTS 181
Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG-C 343
G+TG PKGV I+H ++ + A K I G DVYL PL H+ L++ ML G C
Sbjct: 182 GTTGRPKGVTISHSALIVQSLA-KIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGAC 240
Query: 344 AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF-DRVREGVVKKVEEKGGLTK 402
+ L D + ++ + +V T M VPA+ D +
Sbjct: 241 HV----LLPKFDAKAALQAIKQHNV-----TSMITVPAMMADLIS--------------- 276
Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-S 461
L +W F SVR +L G G LS+
Sbjct: 277 ----------LTRKSMTWKV-------------FPSVRKILNG--------GGSLSSRLL 305
Query: 462 QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---------------GRVGPPVPCC 506
+ A + AYG+TE C+ TF DP++ V P C
Sbjct: 306 PDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVC 365
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566
K E D+ G I+ G +V GY+ +T+ V D W TGD
Sbjct: 366 VGKPAPHVELKIG-LDESSRVGRILTRGPHVMLGYWGQNSETASVLSND----GWLDTGD 420
Query: 567 IGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
IG + G L +I R D +K GE + +VEA L
Sbjct: 421 IGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456
|
Length = 563 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-19
Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 29/201 (14%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY----S 187
TY E+ RA + A+ L G D R +LA +++ AF GC V
Sbjct: 25 TYAELDRRARAIAARLQALGAPGD-RVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83
Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
L L + ++ S L L A ++ + ++ +D + +
Sbjct: 84 GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAA----- 138
Query: 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P + +A + YTSGSTG PKGVM+THGN++A AI
Sbjct: 139 -----------------DWRPPPPDP-DDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 308 KTLIPNPGRSDVYLAYLPLAH 328
DV +++LPL H
Sbjct: 181 ARAFG-LDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 3e-19
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV--GRVGP 501
+R +CGGAP+ + ++R +GA + +AYG+TE + + D G
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGR 266
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
PVP +++V D+ +P GE+ V G + GY + P T + G
Sbjct: 267 PVPGVEVRIV--DD-----DGNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAF---TDDG 316
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618
WF TGD+G++ DG L I RKKDI+ ++ GE IS ++E L+ V + + A P
Sbjct: 317 --WFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAVVAMP 373
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-19
Identities = 133/653 (20%), Positives = 226/653 (34%), Gaps = 172/653 (26%)
Query: 44 RKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGK 103
R K + VE + I++ ++ L + P +L +
Sbjct: 17 RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70
Query: 104 RKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163
R+ ++ K+ TYGE + A L++ G + IL+
Sbjct: 71 RE---------PGHGQWRKV--------TYGEAKRAVDALAQALLDLGLDPGRPVMILSG 113
Query: 164 TCVEWFIAFQGCFRQSITVVTI---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS 220
+E + + + + YS + D H+ +LK L +
Sbjct: 114 NSIEHALMTLAAMQAGVPAAPVSPAYSLMSHD---HA--------------KLKHLFDL- 155
Query: 221 SSLKTIKNVIYFENDGSEKDSG-------------VSGGISNWTVSSFSEVEKLGKRSPV 267
+K + F G+ V+G +F+++ + V
Sbjct: 156 -----VKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAV 210
Query: 268 DPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGRSDVYLA 322
++ + + VA ++TSGSTG+PK V+ T + A A + L P+P V L
Sbjct: 211 AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP-VSLD 269
Query: 323 YLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTD---TSSKIKKGTKG--DVSVL 371
++P H G + G TL + D ++ + ++S
Sbjct: 270 WMPWNH-----------TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS-- 316
Query: 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
PT+ VPA + + E + K + KNL + Y G L L+
Sbjct: 317 -PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAY------------GGATLSDDLY 363
Query: 432 DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW 491
+ + +VR G RI F YG TET +T + W
Sbjct: 364 ERMQALAVRTT-GHRIPFY------------------------TGYGATETAPTTTGTHW 398
Query: 492 DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKT 548
D VG +G P+P +KL P G E+ V G NVT GY +P T
Sbjct: 399 DTERVGLIGLPLPGVELKLA--------------PVGDKYEVRVKGPNVTPGYHKDPELT 444
Query: 549 SEVYKVDERGMCWFY-TGDIGQ-VYPDGCLEIIDRKKDIV---------KLQHGEYISLG 597
+ + DE G FY GD + V PD D +K ++ KL G ++S+G
Sbjct: 445 AAAF--DEEG---FYRLGDAARFVDPD------DPEKGLIFDGRVAEDFKLSTGTWVSVG 493
Query: 598 KVEAALI--SSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDL 648
+ + S + + ++ A + L P+ A + A + ED+
Sbjct: 494 TLRPDAVAACSPVIHDAVV-AGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDV 545
|
Length = 624 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 5e-19
Identities = 97/344 (28%), Positives = 143/344 (41%), Gaps = 81/344 (23%)
Query: 254 SFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT---AAAIKT 309
SF G+R V P L +A + YT G+TG+ KG M+TH N++A A A
Sbjct: 185 SFRSALHKGRRMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG 243
Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
+ +PG+ V A LPL H+ L ++ I+ G +
Sbjct: 244 PLLHPGKELVVTA-LPLYHIFALTVNCLLF--------------------IELGGQN--- 279
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG--SWFGAWGLE 427
L+ P R G VK+++ K A+ G + F A L
Sbjct: 280 -----LLITNP----RDIPGFVKELK--------------KYPFTAITGVNTLFNAL-LN 315
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE-----T 482
+ + F S++ +GG G A A ++R++ + G + + YGLTE +
Sbjct: 316 NEEFQELDFSSLKLSVGG-------GMAVQQAVAERWVKL-TGQYLLEGYGLTECSPLVS 367
Query: 483 CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
+ G +G PVP IKLV D+G +P GE+ V G V GY+
Sbjct: 368 VNPYDLDYYS----GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYW 419
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
P T EV K G W TGDI + +G L I+DRKKD++
Sbjct: 420 QRPEATDEVIK---DG--WLATGDIAVMDEEGFLRIVDRKKDMI 458
|
Length = 560 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 5e-19
Identities = 90/380 (23%), Positives = 147/380 (38%), Gaps = 82/380 (21%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGN--IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
VA+ + G+TGLPK + TH + A A+A + +PG VYLA LP AH L++
Sbjct: 141 VALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL-DPG--TVYLAVLPAAHNFTLSS 197
Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
++ A+ G T+ + P+ A P I RE V
Sbjct: 198 PGLL----GALLAGGTVVLHHP----------------PSPDVAFPLI---EREKVT--- 231
Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
A+ + W LE WD S+R + GG
Sbjct: 232 ------------------HTALVPALLNLW-LEAAEWDQADLSSLRVIQ--------VGG 264
Query: 455 APLSADSQRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVS 512
APLS + R + +G P+ Q +G+ E + + D + G P+ P I++V
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIV- 323
Query: 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
D+ G + GE++ G GY+ P + + D ++ TGD+ ++
Sbjct: 324 -DDQGEPVPPGEV--GELLTRGPYTIRGYYRAPEHNARAFTDD----GFYRTGDLVRIDA 376
Query: 573 DGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPF--HNYCVALVV 628
DG ++ R KD + + GE IS ++E L+S V + ++ D C +V
Sbjct: 377 DGYYRVVGRIKDQIN-RGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVV- 434
Query: 629 PSHKALEKWAHEASIKYEDL 648
A+ +L
Sbjct: 435 --------PRGGAAPTLAEL 446
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 4e-18
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 18/202 (8%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS 188
TY E+ R A+ L G R AI A W IA G + VV T Y++
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
E A I L L L + ++ L +++V+ E + + +
Sbjct: 92 -DEAAYI--LARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK--- 145
Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
+F++ G + P + + VA I++TSG+TG PKG M+TH +++ AA
Sbjct: 146 -----TFTDFLAAGDPAERAPEVDPDD-VADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199
Query: 309 TLIP-NPGRSDVYLAYLPLAHV 329
+ G D YLA P HV
Sbjct: 200 EYLGLTEG--DRYLAANPFFHV 219
|
Length = 513 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-18
Identities = 119/504 (23%), Positives = 179/504 (35%), Gaps = 119/504 (23%)
Query: 127 DYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY 186
Y+ ++ E+ R+ + A GL G RA ++ +E+F F+ V +
Sbjct: 38 AYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVD 97
Query: 187 SSLGEDALIHSLNETQVTTLICDSK-QLKK--LSAVSSSLKTIKNVIYFENDGSEKDSGV 243
+G L L E Q I K L + S++ + V
Sbjct: 98 PGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTV-------------- 143
Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
GG W ++ + + + G +P + + + +A I++TSGSTG PKGV+ THG A
Sbjct: 144 -GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQ 202
Query: 304 AAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
A++ PG D L PL + A L MT
Sbjct: 203 IEALREDYGIEPGEID--LPTFPLFALFGPA-----------------LGMT-------- 235
Query: 363 GTKGDVSVLKPTLMAAVPA------IFDRVREGVVKKVEEKGGLTKNLF-NIGYKRRLAA 415
SV+ P + PA +F + E+ G+T NLF + RL
Sbjct: 236 ------SVI-PDMDPTRPATVDPAKLFAAI---------ERYGVT-NLFGSPALLERL-- 276
Query: 416 VEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPI 473
G +G I S+R V I GAP+ +RF + A I
Sbjct: 277 ------GRYGEAN----GIKLPSLRRV--------ISAGAPVPIAVIERFRAMLPPDAEI 318
Query: 474 GQAYGLTE-----TCAGST--FSEWDDPSVGR---VGPPVPCCYIKLV--------SWDE 515
YG TE + F+ G VG PV ++++ WD+
Sbjct: 319 LTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDD 378
Query: 516 GGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
+ GEIVV G VT Y+N P T D +G W GD+G +
Sbjct: 379 ------ALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA 432
Query: 573 DGCLEIIDRKKDIVKLQHGEYISL 596
G L RK V+ G ++
Sbjct: 433 QGRLWFCGRKAHRVETAGGTLYTI 456
|
Length = 552 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 8e-18
Identities = 121/498 (24%), Positives = 181/498 (36%), Gaps = 134/498 (26%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
R A+ + ++W IA C + I + I H LN+ LI D
Sbjct: 26 RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDA--A 83
Query: 217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG 276
SA+ + T+ +Y + S LP+ G
Sbjct: 84 SALHTPFATLGEDLYIAL----------------------------RPSANPVELPA--G 113
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE-LAAE 335
A I YTSGSTG PKGV ++ + A ++ I + +L LPLA +LE +A
Sbjct: 114 TAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI-AILEPERHLCLLPLATLLENIAGV 172
Query: 336 SIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393
L G + + L ++ +S +S +P + VP
Sbjct: 173 YAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQ------------ 220
Query: 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR--AVLGGRIRFMI 451
L L +AAVE G +S+R AV G R+
Sbjct: 221 ------LLMAL--------VAAVEQ------GPLP-------PESLRFVAVGGARV---- 249
Query: 452 CGGAPL--SADSQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSVGRVGPPVPC 505
L A + +G P+ + YGL+E CA S S D P G VG P+P
Sbjct: 250 --SPSLLQRARA-------LGLPVYEGYGLSE-CA-SVVSLNTPGADRP--GSVGKPLPH 296
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
+ + GEI+V G ++ GY P T + W+ TG
Sbjct: 297 VQVSIA--------------NDGEILVRG-SLMLGYLGEPPATDD----------WWATG 331
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD--PFHNYC 623
D+G + +G L I RKK+++ G +S VE+ L + + ++ D PF
Sbjct: 332 DLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVFGDAQPF---L 388
Query: 624 VALVVP----SHKALEKW 637
VAL+VP S LE
Sbjct: 389 VALIVPAPNISDDQLEAA 406
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-17
Identities = 57/196 (29%), Positives = 78/196 (39%), Gaps = 55/196 (28%)
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
++ + L +R M G P A ++ +G + YGLTET T EW
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKP--- 328
Query: 497 GRVGPPVPCCYIKLVSWDEG--------------GYKTSD----------KPMPR----- 527
WD Y + K +PR
Sbjct: 329 ---------------EWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTI 373
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GEIV+ G V GY+ NP T E + G WF++GD+ V+PDG +EI DR KDI+
Sbjct: 374 GEIVMRGNTVMKGYYKNPEATEEAFA---GG--WFHSGDLAVVHPDGYIEIKDRSKDII- 427
Query: 588 LQHGEYISLGKVEAAL 603
+ GE IS +VE L
Sbjct: 428 ISGGENISSIEVEGVL 443
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 64/198 (32%), Positives = 87/198 (43%), Gaps = 22/198 (11%)
Query: 449 FMICG----GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR-----V 499
F+ CG A +RF N A I YG TE T E + R +
Sbjct: 219 FLFCGEVLPKKLAKALRRRFPN----ARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
G P P ++ DE G P GE+V+ G V+ GY NNP KT++ + DE G
Sbjct: 275 GYPKPGLRALIL--DEDG--RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDE-GQ 329
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHA 616
W+ TGD+ + DG L + RK +KL HG I L ++EAAL + V+ + +
Sbjct: 330 RWYRTGDLVYLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPK 388
Query: 617 DPFHNYCVALVVPSHKAL 634
VA VV AL
Sbjct: 389 GEKVVRLVAFVVGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 6e-17
Identities = 108/425 (25%), Positives = 155/425 (36%), Gaps = 99/425 (23%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
A+IM+T G+TGLPK V TH NI ++ AI T D +A +PL H L A +
Sbjct: 179 AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALL 237
Query: 338 MLCAGC------AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
A A G S T D D+ + T AVP I + E
Sbjct: 238 ATLASGGAVLLPARGRFSAHTFWD-----------DIKAVGATWYTAVPTIHQILLE--- 283
Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
AA E A L RF+
Sbjct: 284 ---------------------RAATEP-----------------SGRKPAAL----RFIR 301
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETC--AGSTFSEW----DDPS-----VGRVG 500
APL+A++ + + AP+ A+G+TE +T E ++P VGR
Sbjct: 302 SCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
I++V D GE+ + G V GY +P T+ +
Sbjct: 362 GA----QIRIVGSDGL----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDG----- 408
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620
W TGD+G + G L I R K+++ + GE IS +VE L S V + P
Sbjct: 409 WLRTGDLGSLSAAGDLSIRGRIKELIN-RGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467
Query: 621 NY---CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEF 677
Y A++VP A E+L + C + A E+ + +AS L +
Sbjct: 468 LYGEAVAAVIVPRES--------APPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKG 519
Query: 678 FLSRR 682
L RR
Sbjct: 520 SLDRR 524
|
Length = 534 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
++ + GG L + G I + YG+TET + + VG +G PVP
Sbjct: 327 ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPS 386
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
K++ D+G + GE+ V G V GY+ P T E+ +D G W TG
Sbjct: 387 TLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEI--LDSDG--WLKTG 438
Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
DI + DG + I+DRKKD++
Sbjct: 439 DIALIQEDGYMRIVDRKKDMI 459
|
Length = 562 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGA L + G + YGLTET + F+ D P +G PV +++
Sbjct: 206 GGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVI 265
Query: 512 SWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
+ G + +P GEIVV G V GY+N P T+E + + G +F TGD+G
Sbjct: 266 DPETG------EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELD-GKRFFRTGDLG 318
Query: 569 QVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
+ +G +DR K ++ + G + +VEA L
Sbjct: 319 YIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALL 352
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-16
Identities = 65/209 (31%), Positives = 95/209 (45%), Gaps = 36/209 (17%)
Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF-------SEWDDPSVG 497
+R +I GG L A+ +R+ + GA + AYG TET T+ + +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKV 554
R P+ + ++ DE +P+P GE+ +GG V GY N P T+E +
Sbjct: 269 R---PIANTRVYVL--DEDL-----RPVPVGVPGELYIGGAGVARGYLNRPELTAERFVP 318
Query: 555 D------ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607
D ER Y TGD+ + PDG LE + R D VK+ G I LG++EAAL++
Sbjct: 319 DPFGGPGER----LYRTGDLARWLPDGNLEFLGRADDQVKI-RGYRIELGEIEAALLAHP 373
Query: 608 YVDN---IMIHADPFHNYCVALVVPSHKA 633
V + VA VVP+ A
Sbjct: 374 GVREAVVVAREDGAGEKRLVAYVVPAAGA 402
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-16
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 29/207 (14%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLV 511
G A + A ++R+ + G I + YGLTET ++ + + + + +G VG PVP +K++
Sbjct: 342 GTALVKATAERWEQL-TGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI 400
Query: 512 SWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
D+G ++ P+ RGE+ + G V GY+ P T+E +D G WF TGDI +
Sbjct: 401 D-DDG----NELPLGERGELCIKGPQVMKGYWQQPEATAEA--LDAEG--WFKTGDIAVI 451
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPS 630
PDG + I+DRKKD++ + G + ++E D +M H P C A+ VP
Sbjct: 452 DPDGFVRIVDRKKDLI-IVSGFNVYPNEIE---------DVVMAH--PKVANCAAIGVPD 499
Query: 631 HKALEK-----WAHEASIKYEDLSELC 652
++ E A + + E+L C
Sbjct: 500 ERSGEAVKLFVVARDPGLSVEELKAYC 526
|
Length = 562 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-16
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVP 504
+R I G APL A++ R G I + YG+TET +T + +D G VG P+P
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNM-NTSNPYDGERRAGTVGFPLP 328
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+++ + G +P GE I V G NV GY+ P KT+E ++ D G +
Sbjct: 329 GVSLRVTDPETG------AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRAD--G--F 378
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIV 586
F TGD+G++ G + I+ R KD++
Sbjct: 379 FITGDLGKIDERGYVHIVGRGKDLI 403
|
Length = 504 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-16
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 477 YGLTETCAGSTF---SEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
YGLTE ST+ E D P +G +P + +V DE G + P GE+V
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRP--DSIGKAIPNVELWVV--DEDGNRC--APGEVGELVH 202
Query: 533 GGFNVTAGYFNNPGKTSEVYK-VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
G NV GY+N+P T+E + G YTGD+ ++ +G L + RK D++K + G
Sbjct: 203 RGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTR-G 261
Query: 592 EYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVP 629
+S ++E + + V + VP
Sbjct: 262 YRVSPTEIEEVICAHPLVAE-----------AAVIGVP 288
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 42/209 (20%)
Query: 413 LAAVE-----GSWFGAWGLERMLW----DAIVFKSVRAVLGG-------RIRFMICGGAP 456
LAA+E +W L R+L D S+ +GG RIR
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIR-------- 282
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWD 514
F + A AYGLTETC+G T E + +G G + I++
Sbjct: 283 ------DFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-G 335
Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDG 574
G + P +GEI + G VT GY+ +P KT+E + D WF +GD+G + +G
Sbjct: 336 AGRWLP---PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGD-----WFRSGDVGYLDEEG 387
Query: 575 CLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
L + DRKKD++ + GE I+ +VE +
Sbjct: 388 FLYLTDRKKDMI-ISGGENIASSEVERVI 415
|
Length = 497 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 34/209 (16%)
Query: 446 RIRFMICGGAPLSAD-------SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR 498
+R +I GG +R +N YG TE +T S
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
+G P+P ++ + +P GE+ +GG V GY N P T+E + D
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPD 313
Query: 556 -----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
G + TGD+ + DG LE + RK D VK+ G+ I LG++EA L + V
Sbjct: 314 PFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVV 372
Query: 611 N---IMIHADPFHNYCVALVVPSHKALEK 636
+++ DP VA + A +
Sbjct: 373 VAAVVLLLDDPGGKQLVAFLAVDGAAGGE 401
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-15
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 446 RIRFMICGGAPLSADSQ-----RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
+RF GAPL A RF G + + YG+TET + D G G
Sbjct: 197 PLRF--VFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGVP-IIAPGDPAPPGSCG 248
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV---GGFNVTAGYFNNPGKTSEVYKV 554
P P +++V DE + +P GE+VV + + GY+ P T++ +
Sbjct: 249 RPRPGVEVRIV--DED-----GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-- 299
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
R WF+TGD G+ DG L +DRKKD ++ + GE IS +VEAA+++ V +
Sbjct: 300 --RNG-WFHTGDRGRRDEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAV 355
Query: 615 HADP 618
A P
Sbjct: 356 VAVP 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 78/344 (22%), Positives = 118/344 (34%), Gaps = 85/344 (24%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPG-----RSDVYLAYLPLAHV 329
+A +YTSG+TG PKGVM H + + A A + L PG S ++ AY L +
Sbjct: 93 IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLGNS 151
Query: 330 LELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389
L + A+ T + + +PT++ VPA++ + E
Sbjct: 152 LLFP----LFSGASAVLLPGWPTPEAVLDLLAR--------HRPTVLFGVPALYRALLES 199
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
G + LF +SVR
Sbjct: 200 --------GAGSAPLF-------------------------------RSVRLC------- 213
Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTET----CAGSTFSEWDDPSVGRVGPPVPC 505
+ G L A G I G TE + + + GR P
Sbjct: 214 -VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFIS-NRPGAARPGTTGRPVPGYEA 271
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
LV + G + G++ V G ++ GY+N P KT + D W TG
Sbjct: 272 R---LVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR-DG----WLRTG 319
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D DG R D++K+ G+++S +VEAAL V
Sbjct: 320 DRFSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAV 362
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-15
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
G VG P+P +++V + + +P GE I++GG V GY +P KT+EV K
Sbjct: 960 GSVGMPLPGVAVRIVDPETF------EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
D G+ W+ TGD G + DG L I DR K+ GE + LG VE L
Sbjct: 1014 -DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVEEEL 1061
|
Length = 1146 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-15
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 476 AYGLTETCAGSTFSEWDDPSV---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
YGL+E +TF+ DD G +G + K+V +E G + +P GE
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIV--NELG-----EEVPVGEVGE 365
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
++V G NV GY+++P T+ D W +TGD+G++ +G L I+DRKKD+
Sbjct: 366 LLVRGPNVMKGYYDDPEATAAAIDADG----WLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-14
Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET------CAGSTFSE 490
RA + + M+ G AP +A + +G + YGLTET CA E
Sbjct: 289 AEWRAGIDHPVHAMVAGAAPPAAVIAKMEE--IGFDLTHVYGLTETYGPATVCAWQ--PE 344
Query: 491 WDDPSV-------GRVGPPVPCCYIKLVSWDEGGYKTSD----KPMPR-----GEIVVGG 534
WD + R G P + G D +P+P GEI+ G
Sbjct: 345 WDALPLDERAQLKARQGVRYPL---------QEGVTVLDPDTMQPVPADGETIGEIMFRG 395
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYI 594
V GY NP T E + G WF+TGD+ ++PDG ++I DR KDI+ + GE I
Sbjct: 396 NIVMKGYLKNPKATEEAF---AGG--WFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENI 449
Query: 595 SLGKVEAAL 603
S +VE L
Sbjct: 450 SSIEVEDVL 458
|
Length = 545 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-14
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLV 511
GGAPL + F G + +G+TETC+ T + P G +G +P + +V
Sbjct: 320 GGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVV 379
Query: 512 SWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
S D+ K +P GE + + G NVT GY+N P +++E + V +R F TGDIG
Sbjct: 380 SLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF-VGDR----FLTGDIG 429
Query: 569 QVYPDGCLEIIDRKKDIV 586
+ DG ++DRKKD++
Sbjct: 430 YMDTDGYFFLVDRKKDMI 447
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-14
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 22/120 (18%)
Query: 476 AYGLTETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-- 527
AYG+TET ST + DDP +VGR P + +K+V + G + +PR
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLE---VKIVDPETG------ETVPRGE 397
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GE+ G++V GY+N+P KT+E +D G W +TGD+ + +G + I+ R KD++
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA--IDADG--WMHTGDLAVMDEEGYVNIVGRIKDMI 453
|
Length = 559 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TYGE+ + + + L G + R ++ E+ AF G + V I + L
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D + LN+++ L+ + + L +++VI V GG
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI------------VVGGAGPGA 139
Query: 252 VSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
S+++ L + + + S + +A +Y+SGSTG PKGV+ H +++ TA A
Sbjct: 140 -LSYAQ---LIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 87/361 (24%), Positives = 133/361 (36%), Gaps = 92/361 (25%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
PS + V ++YTSG+TG PKGVM T NI A ++ G DV L P+A
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMA 246
Query: 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT----LMAAVPAIF 383
H M + +T + D + + +++ T MA+ P +
Sbjct: 247 HQ-----TGFMYGLMMPLILNATAVLQDIWNPARA-----AELIRETGVTFTMASTPFLT 296
Query: 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL 443
D R V+E G +LF
Sbjct: 297 DLCR-----AVKESGAPVPSLFT------------------------------------- 314
Query: 444 GGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVG 500
+C GAP+ +GA I A+G+TE T +E DD + G
Sbjct: 315 ------FLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEPDDALEKASTTDG 367
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDER 557
P+P +K++ + + +GE +V G + GY P S D
Sbjct: 368 RPLPGVEVKVIDAN-------GAKLSQGETGRLLVRGCSNFGGYLKRPHLNS----TDAE 416
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHAD 617
G WF TGD+ +G + I R KD++ ++ GE I + ++E L V + I A
Sbjct: 417 G--WFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 618 P 618
P
Sbjct: 474 P 474
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 3e-14
Identities = 100/494 (20%), Positives = 164/494 (33%), Gaps = 110/494 (22%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A L G + R AI AE E +A + V + +
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L ++ L+ L++L + G++
Sbjct: 2090 ERLAYMLEDSGAALLLTQRHLLERLP-------------------------LPAGVARLP 2124
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG----NIVATAAAI 307
+ +E +P L +N +A ++YTSGSTGLPKGV ++HG + A
Sbjct: 2125 LDRDAEWADYPDTAP-AVQLAGEN-LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY 2182
Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTK 365
+ +D L ++ + + A E L G + + D +
Sbjct: 2183 EL-----SPADCELQFMSFS--FDGAHEQWFHPLLNGAR------VLIRDDELWDPEQLY 2229
Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
++ T++ P ++ E E+ G + R FG
Sbjct: 2230 DEMERHGVTILDFPPVYLQQLAE-----HAERDGRPPAV------RVYC------FGG-- 2270
Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
+A+ S+R N YG TE
Sbjct: 2271 ------EAVPAASLRLAWEA-------------LRPVYLFN---------GYGPTEAVVT 2302
Query: 486 STF--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGY--KTSDKPMPR---GEIVVGGFNVT 538
DP G P I + Y + GE+ +GG +
Sbjct: 2303 PLLWKCRPQDPC-GAAYVP-----IGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLA 2356
Query: 539 AGYFNNPGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYIS 595
GY N PG T+E + D G + TGD+ + DG +E + R VK++ G I
Sbjct: 2357 RGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIR-GFRIE 2415
Query: 596 LGKVEAALISSDYV 609
LG++EA L + V
Sbjct: 2416 LGEIEARLQAHPAV 2429
|
Length = 5163 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 6e-14
Identities = 64/233 (27%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 447 IRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGR 498
+RF +CGG + QR I + YG TE+ DDP +
Sbjct: 304 LRFFLCGGTTIPKKVARECQQRGIKLL------SVYGSTESSP-HAVVNLDDPLSRFMHT 356
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G IK+V DE + K +P G E G NV GY + P T+ +D
Sbjct: 357 DGYAAAGVEIKVV--DE-----ARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA--LD 407
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615
E G W+Y+GD+ ++ G ++I RKKDI+ ++ GE IS +VE D ++ H
Sbjct: 408 EEG--WYYSGDLCRMDEAGYIKITGRKKDII-VRGGENISSREVE---------DILLQH 455
Query: 616 ADPFHNYCV-------------ALVVPSHKALEKWAHEASIKYEDLSE-LCNK 654
H+ CV A VV A S+ E++ K
Sbjct: 456 PK-IHDACVVAMPDERLGERSCAYVVLK-------APHHSLTLEEVVAFFSRK 500
|
Length = 547 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-14
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCC 506
R+ +CG APL + R G I + YGLTE S+ + D +G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 507 YIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
+++V D+ G D + G + + G NV +GY ++ +++ W TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLE-AAHNKGLW-LEDG---WLNTG 450
Query: 566 DIGQVYPDGCLEIIDRKKDIV 586
D+G++ DG + R KD++
Sbjct: 451 DLGRIDADGYFWLTGRAKDLI 471
|
Length = 632 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 53/213 (24%), Positives = 80/213 (37%), Gaps = 26/213 (12%)
Query: 123 LHLGDYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
L GD W TY E D A + A+ L++ G R A L + + + C R
Sbjct: 30 LVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAV 87
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
V + L + L + L+ + + D A + L V
Sbjct: 88 HVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP----VDTLILSLVLGGR 143
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
GG W F++ + G + D L + +A I+YTSG+ LPKG M+TH ++
Sbjct: 144 EAPGG---WL--DFADWAEAGSVAEPDVELADDD-LAQILYTSGTESLPKGAMLTHRALI 197
Query: 302 A------TAAAIKTLIPNPGRSDVYLAYLPLAH 328
A A + D+ L LPL H
Sbjct: 198 AEYVSCIVAGDMSA-------DDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 61/173 (35%), Positives = 79/173 (45%), Gaps = 29/173 (16%)
Query: 447 IRFMICGGAP----LSADSQRFINICMGAPIGQAYGLTETCAGSTF----SEWDDPSV-- 496
+ M G AP L A S++ G + YGL+ET ST EWD
Sbjct: 313 VHVMTAGAAPPPSVLFAMSEK------GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEE 366
Query: 497 -GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSE 550
R+ YI L D KT KP+P GEIV+ G V GY NP E
Sbjct: 367 QARLNARQGVRYIGLEGLDVVDTKTM-KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEE 425
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
+ G WF++GD+G +PDG +EI DR KDI+ + GE IS +VE +
Sbjct: 426 AF---ANG--WFHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVV 472
|
Length = 567 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-13
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 9/166 (5%)
Query: 181 TVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA--VSSSLKTIKNVIYFENDGSE 238
V + + E AL ++ + Q+ T+I K L+KL L VIY E D
Sbjct: 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKA 749
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
K S V ++ + L + A I+++SGS G PKGVM++H
Sbjct: 750 KISKVDK-LTALLAARLLPARLLKRLYGPTFKPDD---TATIIFSSGSEGEPKGVMLSHH 805
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGC 343
NI++ I + N DV L+ LP H L + L G
Sbjct: 806 NILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI 850
|
Length = 1146 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPV 503
+R +C GAP+ +GA I A+G+TE A + D + G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
P +++V D P+P G+I V G + GY P ++ D G
Sbjct: 373 PGVEVRVVDAD-------GAPLPAGQIGRLQVRGCSNFGGYLKRP----QLNGTDADG-- 419
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
WF TGD+ ++ DG + I R KD++ ++ GE I + ++EA L
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALL 461
|
Length = 547 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
+ G +++A ++Q+ ++ P K V + G + TY +
Sbjct: 19 YWGDASLADYWQQTARAMPD-----------KIAVVDNHGASY-----------TYSALD 56
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
A A+ L+ G R A E+ I + C + V + S E L+
Sbjct: 57 HAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWV 116
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
LN+ Q ++ + + + + L ++ ++ +
Sbjct: 117 LNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-------------T 163
Query: 253 SSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310
SS S + + P+ ++ + +A +++TSG+ GLPKGVM+TH NI+A+ A L
Sbjct: 164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL 223
Query: 311 IPNPGRSDVYLAYLPLAH 328
N DV++ PL H
Sbjct: 224 --NLTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 7e-13
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 469 MGAPIGQAYGLTETCAGSTFSEWDD-----PS------VGRVGPPVPCCYIKLVSWDEGG 517
+G + AYGLTE F EW D P R G + + L D
Sbjct: 323 LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI----LGLADVDVKN 378
Query: 518 YKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572
+T + +PR GEIV+ G ++ GY NP TSE +K W TGD+G ++P
Sbjct: 379 KETQ-ESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-----HGWLNTGDVGVIHP 432
Query: 573 DGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
DG +EI DR KDI+ + GE IS +VE L
Sbjct: 433 DGHVEIKDRSKDII-ISGGENISSVEVENVL 462
|
Length = 579 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRV 499
+ + GGAP +A+ + G P+ +G++E AG+ F D V G
Sbjct: 252 RHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAGAA 308
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
G P P ++V D+ G +D P +P GE+++ G N++ GY+ P T+ +
Sbjct: 309 GIPTPTVQTRVV--DDQG---NDCPAGVP-GELLLRGPNLSPGYWRRPQATARAF--TGD 360
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAAL 603
G WF TGDI + DG ++DRKKD+ + GE + ++EA L
Sbjct: 361 G--WFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVL 403
|
Length = 488 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)
Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+Y E+ + A A L G R + + ++ IA+ R + VV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI------YFENDGSEK----- 239
E+ L H + ++ I S+ K++ +L +++VI Y +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWL 155
Query: 240 ------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGV 293
+ GG+ W E L P + +AV+ YTSG+TG+PKG
Sbjct: 156 RAEPPLQALAPGGVVAWK-------EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGC 208
Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330
M TH ++A A L N V LA LPL HV
Sbjct: 209 MHTHRTVMANAVG-SVLWSNSTPESVVLAVLPLFHVT 244
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 3e-12
Identities = 99/520 (19%), Positives = 169/520 (32%), Gaps = 110/520 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ RA A L+ G + I E E + + V +
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPR 4637
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + + ++ L+ S L++L + G+++
Sbjct: 4638 ERLAYMMEDSGAALLLTQSHLLQRLP-------------------------IPDGLASLA 4672
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+ + E P P N +A ++YTSGSTG PKGV ++HG++V A
Sbjct: 4673 LDRDEDWEGFPAHDPAVRLHP-DN-LAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGER- 4729
Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
D L ++ + + + E + L G+++ + D S + ++
Sbjct: 4730 YELTPDDRVLQFMSFS--FDGSHEGLYHPLIN------GASVVIRDDSLWDPERLYAEIH 4781
Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
+ T++ P ++ E E G
Sbjct: 4782 EHRVTVLVFPPVYLQQLAEH----AERDGEPPS--------------------------- 4810
Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF 488
+R GG ++ S + YG TET
Sbjct: 4811 -----------------LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETT----- 4848
Query: 489 SEWDDPSVGRVGPPVPC----CYIKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTA 539
+ + C I + GY + P+P GE+ +GG V
Sbjct: 4849 ---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVAR 4905
Query: 540 GYFNNPGKTSEVY---KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
GY P T+E + G + TGD+ + DG ++ + R VK++ G I L
Sbjct: 4906 GYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIR-GFRIEL 4964
Query: 597 GKVEAALISSDYVDNIMIHAD--PFHNYCVALVVPSHKAL 634
G++EA L V ++ A V VVP AL
Sbjct: 4965 GEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPAL 5004
|
Length = 5163 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 49/195 (25%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINIC--MGAP---IGQAYGLTETCAGSTFS--------- 489
+R++I G + A +RF+ + G P I A+G++ETC+G T+S
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348
Query: 490 ---------------EWDDPSVGR---VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI- 530
D P +G P+P I++V DE +P GE+
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV--DE-----DGALLPEGEVG 401
Query: 531 --VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
V G VT+GY+ NP +E + D G WF TGD+G ++ DG L I R+KD++ +
Sbjct: 402 RLQVRGPTVTSGYYRNPEANAEAFTED--G--WFRTGDLGFLH-DGRLTITGREKDMIII 456
Query: 589 QHGEYISLGKVEAAL 603
+G ++EAA+
Sbjct: 457 -NGVNYYNHEIEAAV 470
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 91/464 (19%), Positives = 159/464 (34%), Gaps = 94/464 (20%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +++ + A GL+ G A+LA + +A + ++ + +
Sbjct: 76 TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L V L+ D + LSA+ L ++ +D S T
Sbjct: 136 PQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS---------T 186
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
+ ++ +P P + G VI+ TSG+TG PKG + +A A + + +
Sbjct: 187 DETLDDLIAGSSTAP--LPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRV 243
Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK-KGTKGDVSV 370
P L P+ H A A+ GST+ + + + T D++
Sbjct: 244 PFRAGETTLLP-APMFHATGWA------HLTLAMALGSTVVL---RRRFDPEATLEDIAK 293
Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
K T + VP + R+ + + +V K +
Sbjct: 294 HKATALVVVPVMLSRILD-LGPEVLAKYDTS----------------------------- 323
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE--TCAGST 487
++ + G+ LS + + R + G + YG TE +T
Sbjct: 324 ---------------SLKIIFVSGSALSPELATRALEA-FGPVLYNLYGSTEVAFATIAT 367
Query: 488 FSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFN 543
+ + P VG P +K+ + +PRG I VG GY +
Sbjct: 368 PEDLAEAPGT--VGRPPKGVTVKI-------LDENGNEVPRGVVGRIFVGNGFPFEGYTD 418
Query: 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKD-IV 586
K +D G+ +GD+G DG L + R D IV
Sbjct: 419 GRDKQ----IID--GL--LSSGDVGYFDEDGLLFVDGRDDDMIV 454
|
Length = 549 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 5e-12
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DP+ P++ + +A ++YTSGSTG PKGVM+ H +V A +
Sbjct: 66 PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
Query: 308 KTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAG 342
+ D L + A V E+ L +G
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFP---PLLSG 159
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-12
Identities = 132/700 (18%), Positives = 242/700 (34%), Gaps = 153/700 (21%)
Query: 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
P G ++ ++E+S H R LG+ G+ EW TYG V
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS------------------ESGESEWLTYGTV 463
Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
RA SGL+ G + E I C T + + +G+ + +
Sbjct: 464 DARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMR 520
Query: 197 SL-NETQVTTLICDSKQLKK-LSAVSSSLKTIKNVIYF---ENDGSEKDSGVSGGISNWT 251
+L +E ++ + D + L+ S L+T+ F ++ +D + T
Sbjct: 521 TLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNI-------T 573
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY-----TSGSTGLPKGVMITHGNIVATAAA 306
+ + VE+ G+ PV P V Y TS S V +TH +++
Sbjct: 574 LIPYEFVEQKGRLCPV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVL---RD 629
Query: 307 IKTLI-----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
I TL+ P+ + + + + P A + + +GS + D + +
Sbjct: 630 ISTLVMTGVLPSSFKKHLMVHFTPFAMLFN------RVFVLGLFAHGSAVATVDAAHLQR 683
Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
K +PT++ A P++F R + + E + LF ++ R +
Sbjct: 684 AFVK-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLIN---- 734
Query: 422 GAWGLER---MLWDAIVFKSVRAVLGGRIR-FMICGGAPLSADS-QRFINICMGAPIGQA 476
+ R L I F++ + +LGG + ++C ++ S I++C + +
Sbjct: 735 ----IHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLREV 790
Query: 477 YGLTETCAGSTFSEWDDPSVGRV---GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
+ L PS G G P P + L +DE P +G
Sbjct: 791 FFL--------------PSEGVFCVDGTPAPSLQVDLEPFDE----------PSDGAGIG 826
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD---IGQVYPDGCLEIIDRKKDIVKLQH 590
+ K E + W +G P G L +
Sbjct: 827 QLVLA--------KKGEPRRTLPIAAQWKRDRTLRLLGP--PLGILLPV----------A 866
Query: 591 GEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALE-KW--AHEASIKYED 647
EY+ ++E S YV++I ++ADP +A+V P+ +E +W +H
Sbjct: 867 YEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGP 925
Query: 648 LSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQ----VAKAAKLDKFEIP 703
+ + TE Y ++L +AK L +P
Sbjct: 926 ---------------------ARQLGWTELV---AYASSLLTADFACIAKENGLHPSNVP 961
Query: 704 AKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743
+ L P + + +T KI+R+ + + F ++ Y
Sbjct: 962 EYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFY 1001
|
Length = 1452 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 64/218 (29%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDP------SVGRV 499
+R I GAP + R + M + AYG+TET S + D +VGR
Sbjct: 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRT 378
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
P + K+V D + GE+ G++V GY+NNP T+E +DE G
Sbjct: 379 QPHLEV---KVVDPDGATVPRGEI----GELCTRGYSVMKGYWNNPEATAES--IDEDG- 428
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619
W +TGD+ + G + I+ R KD++ ++ GE I ++E L + V ++ + P
Sbjct: 429 -WMHTGDLATMDEQGYVRIVGRSKDMI-IRGGENIYPREIEEFLFTHPAVADVQVFGVPD 486
Query: 620 HNY---CVALVV--PSHKALEKWAHEASIKYEDLSELC 652
Y VA V P H A E E+L E C
Sbjct: 487 EKYGEEIVAWVRLHPGHAASE----------EELREFC 514
|
Length = 558 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 20/178 (11%)
Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGR----- 498
+++ ++ APL+ + F G + +AYGLTE +C T DP G
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHG---DPEKGHGIAKK 360
Query: 499 --VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
VG +P +K + D G + P GE+ V V GY+NN +T +DE
Sbjct: 361 NSVGFILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEETDRT--IDE 415
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614
G W +TGDIG + DG + I+DR K+++K + G ++ ++EA L++ V++ +
Sbjct: 416 DG--WLHTGDIGYIDDDGDIFIVDRIKELIKYK-GFQVAPAELEAILLTHPSVEDAAV 470
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 3e-11
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 18/205 (8%)
Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
+ A ++ ++CGG L AD Q+ + G P+ YG TE T + +
Sbjct: 3302 LEEEDAHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEG 3359
Query: 496 VGR--VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSE 550
+G P+ ++ S +P+P G E+ +GG + GY N PG T+E
Sbjct: 3360 KDAVPIGRPIANRACYILD-------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412
Query: 551 VYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ D G + TGD+ + DG +E I R VK++ G I LG++EA L+ +
Sbjct: 3413 RFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIR-GFRIELGEIEARLLEHPW 3471
Query: 609 VDNIMIHADPFHNYCVALVVPSHKA 633
V ++ A VA VVP +A
Sbjct: 3472 VREAVVLAVDGRQL-VAYVVPEDEA 3495
|
Length = 5163 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 256 SEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
+E+L P P P++ + A+++ TSGSTG+PK V++TH NI+A +A +
Sbjct: 147 LAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAG-TVQVNGF 205
Query: 315 GRSDVYLAYLPLAHVLELAAESIM-LCAGCA 344
DV L ++PL HV + + + GC
Sbjct: 206 TPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQ 236
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-11
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR- 527
G PI + YGL+ET +T + D G +G P+P + + D+ G +D P+
Sbjct: 352 GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIR--DDDG---NDLPLGEP 406
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GEI + G V AGY+N P +T++V D +F TGD+G + G +I+DRKKD++
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADG----FFRTGDVGVMDERGYTKIVDRKKDMI 461
|
Length = 557 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GE+ +GG V GY+ +P T+E + G + TGD+G+ PDG +E + R VK
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386
Query: 588 LQHGEYISLGKVEAAL 603
++ G + LG++EAAL
Sbjct: 387 IR-GYRVELGEIEAAL 401
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 445 GRIRFMICGGAPLSA-DSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPP 502
R ++ G A L R + P+ + YG+TET ST ++ + G VG P
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPV-ERYGMTETLITLSTRAD-GERRPGWVGLP 298
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+ +LV ++GG D GE+ V G + GY N P T+ + D WF
Sbjct: 299 LAGVETRLVD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAFTADG----WF 352
Query: 563 YTGDIGQVYPDGCLEIIDRKK-DIVKLQHGEY-ISLGKVEAALI 604
TGD+ V PDG I+ R+ D++K G Y I G++E AL+
Sbjct: 353 RTGDVAVVDPDGMHRIVGRESTDLIKS--GGYRIGAGEIETALL 394
|
Length = 471 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 10/203 (4%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ + + FA+ L G R A+ C ++ I F G + V + E
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISN 249
L + LN+ L+ + + V + SL+ + + +E + +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRA 179
Query: 250 WTVSS------FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
+++ + P+ P P+ + +A + YT G+TG+PKG T ++V T
Sbjct: 180 PRLAAAGAIDLLPALRACTAPVPLPP--PALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 304 AAAIKTLIPNPGRSDVYLAYLPL 326
AAA + G V+L++LP
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 29/184 (15%)
Query: 441 AVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS-----EWDDP 494
L G +R ++ GG LS +R + C G + YG TE +TFS D
Sbjct: 237 EALAG-LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE---NTTFSTCHVITRLDE 292
Query: 495 SVGRV--GPPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
+ + G P+P YI DE G +P+P GE+ VGG + GY N P
Sbjct: 293 AADSIPIGRPIPNTTVYI----LDEEG-----QPVPIGVPGELYVGGDGLALGYLNRPEL 343
Query: 548 TSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
T+E + D G + TGD+ + PDG +E + R VK++ G I LG++E AL+
Sbjct: 344 TAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGEIEQALLQ 402
Query: 606 SDYV 609
V
Sbjct: 403 HPGV 406
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 63/198 (31%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ + A L G R A+ + ++ IA+ R VV + E
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L H L DSG I
Sbjct: 63 AELEHIL----------------------------------------NDSGARVLIV--- 79
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
SE++ VAVI YTSG+TGLPKG M TH ++ATAAA
Sbjct: 80 ---GSELDD----------------VAVIPYTSGTTGLPKGCMHTHRTVLATAAASA-AW 119
Query: 312 PNPGRSDVYLAYLPLAHV 329
V LA+LPL HV
Sbjct: 120 SGLTPDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 477 YGLTETCAGSTFSE-----WDDPSVGRVGPPVP--CCYIKLVSWDEGGYKTSDKPMPR-- 527
YG +E ST++E PS+GR P+ Y+ D +P+P
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTPSIGR---PLAGTQAYV----LDAHL-----QPVPVGV 293
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC---WFY-TGDIGQVYPDGCLEIIDRK 582
GE+ +GG V GY P T+E + + Y TGD+ + DG LE + R
Sbjct: 294 PGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRI 353
Query: 583 KDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPS 630
D VK++ G I LG++EAAL S V + I VA +V
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 25/124 (20%)
Query: 476 AYGLTETCAGSTFSEW---DD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
A+G+TET TF+ DD P VG PVP K+ ++ G + +P
Sbjct: 359 AWGMTETHTCDTFTAGFQDDDFDLLSQPVF--VGLPVPGTEFKICDFETG------ELLP 410
Query: 527 ---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GEIVV ++ GY+N P T+E G W +TGDIG++ G L + R+K
Sbjct: 411 LGAEGEIVVRTPSLLKGYWNKPEATAEAL---RDG--WLHTGDIGKIDEQGFLHYLGRRK 465
Query: 584 DIVK 587
+++K
Sbjct: 466 EMLK 469
|
Length = 567 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 447 IRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFS-------EWDDPSVGR 498
IR ++ G APL + + + A +GQ YG+TE AG + E G
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLAMCLAFAKEPFPVKSGS 357
Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G V +K+V + G +PR GEI + G + GY N+P T+ +D
Sbjct: 358 CGTVVRNAELKIVDPETG------ASLPRNQPGEICIRGPQIMKGYLNDPEATANT--ID 409
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
+ G W +TGDIG + D L I+DR K+++K + G ++ ++EA LIS
Sbjct: 410 KDG--WLHTGDIGYIDDDDELFIVDRLKELIKYK-GFQVAPAELEALLIS 456
|
Length = 537 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 46/231 (19%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVT---IYSS 188
TY +V + A+GL G +L C E+ +AF G R+ T Y+
Sbjct: 52 TYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP 111
Query: 189 LGEDALIHS-LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK----DSGV 243
A I + +I S + KL D D
Sbjct: 112 ----AEIAKQAKASGAKLIITQSCYVDKLKG-------------LAEDDGVTVVTIDDPP 154
Query: 244 SGGISNWTVSSFSEVEKLGKR-SPVDP-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
G + ++ E E SP D +LP Y+SG+TGLPKGVM+TH +V
Sbjct: 155 EGCLHFSELTQADENELPEVEISPDDVVALP---------YSSGTTGLPKGVMLTHKGLV 205
Query: 302 ATAAAIKTLIPNP----GRSDVYLAYLPLAHVLELAAESIMLC---AGCAI 345
T+ A + NP DV L LP+ H+ L S++LC G AI
Sbjct: 206 -TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSL--NSVLLCGLRVGAAI 253
|
Length = 537 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
+R ++ G PL+ + + G PI YG TET + G +G P P
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAP 256
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDER 557
+ ++ D+ G + P G+I V G F GY +P KT + D
Sbjct: 257 GYRVAII--DDEGNEL--PPGEEGDIAVRVKPRPPGLF---RGYLKDPEKTEATIRGD-- 307
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
W+ TGD DG + R D++K G I +VE+ALI
Sbjct: 308 ---WYLTGDRAIKDEDGYFWFVGRADDVIK-SSGYRIGPFEVESALI 350
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 188 SLGEDALIHSLNETQVTTLICDSKQL---KKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
S G ++ + QV T + S+ +L + +L+ +IY E+ V
Sbjct: 715 SAGIANILSACKAAQVKT-VLTSRAFIEKARLGPLIEALEFGIRIIYLED--------VR 765
Query: 245 GGISNWT------VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
I F V R P DP AVI++TSGS G PKGV+++H
Sbjct: 766 AQIGLADKIKGLLAGRFPLV-YFCNRDPDDP--------AVILFTSGSEGTPKGVVLSHR 816
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
N++A A + I D LP+ H L ++
Sbjct: 817 NLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVL 855
|
Length = 1140 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 23/226 (10%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L G W TY E A + A L G R A++ +E+ F GC
Sbjct: 40 LVFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V I ++L L H L + L+ ++ L L A + V
Sbjct: 99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW------------ 146
Query: 243 VSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI- 300
+ ++ +V + +S +P + A I+YTSG+TG KGV H
Sbjct: 147 LLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY 206
Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGC 343
+A ++ G DV LPL H L A L AG
Sbjct: 207 WWGRNSAEDLEI-----GADDVLYTTLPLFHTNALNAFFQALLAGA 247
|
Length = 542 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
+A I+YTSGSTG PKGVM++H N+ A A +I + D LA LP +
Sbjct: 4 LAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLEL-TEDDRILAVLPFSF 54
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA 218
A+L E E+ A+ G + V + + L HSLN LI + ++
Sbjct: 91 ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEE 150
Query: 219 VSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGV- 277
+ L ++ + D + ++ +P S++GV
Sbjct: 151 ARADL-ARPPRLWVAGGDTLDDPE-----------GYEDLAAAAAGAPTTN-PASRSGVT 197
Query: 278 ----AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA 333
A +YTSG+TGLPK +++H + L+ DV LPL H
Sbjct: 198 AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYH----- 251
Query: 334 AESIMLCAGCAIGYGSTL 351
+ + G+TL
Sbjct: 252 NTGGTVAWSSVLAAGATL 269
|
Length = 600 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-10
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 446 RIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPP 502
+R + G AP S R + A I A+G TE + +D +G VG
Sbjct: 291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKV 350
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
+P ++V DE +D P+ GEIV + +GY+NNP T+E + G W
Sbjct: 351 IPTVAARVV--DE---NMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF---AGG--W 400
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
F++GD+ + +G + ++DRKKD++ + GE I +VE L S
Sbjct: 401 FHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLAS 443
|
Length = 542 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-10
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-- 312
F++ G PV + P + VAV+ YT G+TG+ KG M+TH N+VA + L+
Sbjct: 187 FNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSN 246
Query: 313 -NPGRSDVYLAYLPLAHV 329
N G ++ +A LPL H+
Sbjct: 247 LNEGC-EILIAPLPLYHI 263
|
Length = 562 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 7e-10
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 447 IRFMICGGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTF------SEWDDPSVGRV 499
+R++I GAP+ AD +R + +G + Q +GL E T D P R+
Sbjct: 282 LRYVIYAGAPMYRADQKRALAK-LGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDA-RI 339
Query: 500 GPPVPCCY----IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
G C + +++ D+ G + P GEI V G V AGY+NNP ++ ++
Sbjct: 340 GT---CGFERTGMEVQIQDDEGREL--PPGETGEICVIGPAVFAGYYNNPEANAKAFRDG 394
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597
WF TGD+G + G L I R D+ YIS G
Sbjct: 395 -----WFRTGDLGHLDARGFLYITGRASDM-------YISGG 424
|
Length = 528 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 51/177 (28%)
Query: 447 IRFMICGGAPLS-ADSQRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP---- 494
+RF + G P+ AD + ++ GA G AYG+ E +FS
Sbjct: 278 LRFALNGAEPIDPADVEDLLD--AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVD 335
Query: 495 ----------------------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
+ +GPP+P +++V DE G + +P G
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV--DEDG-----QVLPPRGVGV 388
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
I + G +VT GY G + D G W TGD+G + +G + + R KD++
Sbjct: 389 IELRGESVTPGYLTMDG---FIPAQDADG--WLDTGDLGYLTEEGEVVVCGRVKDVI 440
|
Length = 545 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELA 333
+ A+I++TSG+TG PKGV +TH N++A+A I K+ P SD L +PL H+ L
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP--SDRCLNVMPLFHIHGLI 59
Query: 334 AESIM--LCAGCAI 345
S++ L AG ++
Sbjct: 60 V-SLLATLLAGGSV 72
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 17/207 (8%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
GD + TY E +DR AS L G A+LA A G +V +
Sbjct: 26 GDRRY-TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L D + LN ++ L D + L + L T K +I E + S
Sbjct: 85 NTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143
Query: 246 GISNWTVSSFSEVEKL---GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIV 301
+ E L G P+ + + YTSG+TG PKGV+ TH G +
Sbjct: 144 EG---------DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYL 194
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAH 328
+ + VYL LP+ H
Sbjct: 195 NALGNV--IEWGMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
P+DPS P++ + +A I++TSGSTG PKGV I+H N+ + +
Sbjct: 70 PLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWM 129
Query: 308 KTLIPNPGRSDVYLAYLPL 326
DV+ P
Sbjct: 130 VEDFDLTEG-DVFSNQAPF 147
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 34/174 (19%)
Query: 444 GGRIRFMICGGAP---LSADSQRFINICMGAPIGQAYGLTET---CAGSTFSEWDDPSVG 497
R+R + G P +A +RF G + YG TET A + G
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF-----GVDLLDGYGSTETNFVIAVT----HGSQRPG 343
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGG---FNVTAGYFNNPGKTSEV 551
+G P ++V DE D+ +P GE+++ F GYF P KT E
Sbjct: 344 SMGRLAPGFEARVV--DEH-----DQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
++ WF+TGD DG +DR KD ++ + GE IS +VE L+S
Sbjct: 397 WR-----NLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLS 444
|
Length = 542 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
V L P+DP ++ +A++ TSGSTG PK V ITHGN+ A A A+
Sbjct: 134 TVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVE 193
Query: 317 SDVYLAYLPLAH 328
+DV +++LPL H
Sbjct: 194 TDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI---YSS 188
TY E+ +RA A L+ G I A +E+ A G F+ V + Y
Sbjct: 30 TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV- 88
Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
ED L + L+++ L+ + + +++ V L ++ ++ E DGS D G +
Sbjct: 89 --EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVE-DGSGNDLL-PGAVD 144
Query: 249 NWTVSSFSEVEKL-GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
+ E+ G+RSP D ++YT G+TG+PKGVM +I
Sbjct: 145 YEDALAAGSPERDFGERSPDD---------LYLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPPVP 504
R+R + GG L + + +G + + YG TE + G +G PVP
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVP 267
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA-------GYFNNPGKTSEVYKVDER 557
+ +V D+ G +P+P GE VG V GY+NNP T+ + D
Sbjct: 268 GHEVAVV--DDAG-----RPVPPGE--VGEIAVKRPDPVMFLGYWNNPEATAAKFAGD-- 316
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W TGD+G+ DG L R D++K G I ++E L+ V
Sbjct: 317 ---WLLTGDLGRRDADGYLWFKGRADDVIK-SSGYRIGPAEIEECLLKHPAV 364
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 30/206 (14%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEW----DDPSVGRVGP 501
+R ++CGG L ++ R + + YG TET T W D GR
Sbjct: 1836 LRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTH--WTCRRKDLE-GRDSV 1892
Query: 502 PV--PCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY---- 552
P+ P + D S P+P GE+ +GG + GY N P T+E +
Sbjct: 1893 PIGQPIANLSTYILDA-----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADP 1947
Query: 553 --KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
V R + TGD+ + DG +E + R VK++ G I LG++EA L V
Sbjct: 1948 FGTVGSR---LYRTGDLARYRADGVIEYLGRIDHQVKIR-GFRIELGEIEARLREQGGVR 2003
Query: 611 N--IMIHADPFHNYCVALVVPSHKAL 634
++ VA VVP+ L
Sbjct: 2004 EAVVIAQDGANGKQLVAYVVPTDPGL 2029
|
Length = 3956 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 16/174 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+YGE+ + + L G + R +L V++ IAF G R I V + + L
Sbjct: 32 SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D + L +++ + + L + A +++ + V G
Sbjct: 92 DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV------------VVGRPEAGE 139
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
V E L S +Q + A +Y+SGSTG+PKGV+ TH N TA
Sbjct: 140 VQL---AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
F + + G+ + P + +AV+ YT G+TGL KG M+THGN+VA ++ +
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245
Query: 314 PGR---------SDVYLAYLPLAHVLELAAESI-MLCAG 342
G +V +A LPL H+ A + M+ +G
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSG 284
|
Length = 562 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 47/204 (23%), Positives = 68/204 (33%), Gaps = 44/204 (21%)
Query: 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
Y W+ + DR A GL+ G R I A C EW + R +V I
Sbjct: 46 YTWRQLADAVDR---LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102
Query: 188 SLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT-------------IKNV 229
+ L ++L ++ V +IC S L + L ++ V
Sbjct: 103 AYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGV 162
Query: 230 IYFENDGSEKDSGVSGGISNW--------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM 281
+ G W TVS + E+ DP I
Sbjct: 163 VSL-------APAPPPGFLAWHELQARGETVSREALAERQASLDRDDP--------INIQ 207
Query: 282 YTSGSTGLPKGVMITHGNIVATAA 305
YTSG+TG PKG ++H NI+
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGY 231
|
Length = 558 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 38/170 (22%), Positives = 54/170 (31%), Gaps = 30/170 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +RA A L G A+L E E +A + V + +
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L L ++ L+ + L L+ I D
Sbjct: 74 ERLAFMLEDSGARVLL-TDESLAPLARADQLPLVILEEELDAEDAGPP------------ 120
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
VD A +MYTSGSTG PKGV + H +V
Sbjct: 121 ------------APAVDADDL-----AYVMYTSGSTGRPKGVAVPHRGVV 153
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 32/215 (14%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L LGD TYG++ DR + G A+L+ E +A +
Sbjct: 31 LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89
Query: 183 VTIY--SSLGEDALIHSLNETQVTTLICDSKQLKK----LSAVSSSLKTIKNVIYFENDG 236
++ SL + A + L + ++TLI D + L A SLK +
Sbjct: 90 TALHPLGSLDDHAYV--LEDAGISTLIVDPAPFVERALALLARVPSLKHV---------- 137
Query: 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
++ G V + K G V +LP +A + YT G+TG PKGVM T
Sbjct: 138 ------LTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD--IAGLAYTGGTTGKPKGVMGT 189
Query: 297 HGNIVATAAAIKTL--IPNPGRSDVYLAYLPLAHV 329
H +I A P R +L PL+H
Sbjct: 190 HRSIATMAQIQLAEWEWPADPR---FLMCTPLSHA 221
|
Length = 524 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESI 337
I+YTSG+TG PKGV++TH ++ A L+ DV L LPL H+ + +
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPD-DVLLTPLPLFHINAQAYSVYAA 144
Query: 338 MLCAGCAI 345
+L +
Sbjct: 145 LLVGATLV 152
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 32/219 (14%)
Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST 487
L + + GG + + ++ + YG TE T
Sbjct: 3337 YLQQFAEDAGGAD--CASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394
Query: 488 FSEWDDPSVGRVGPP-VP--------CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGF 535
W P P Y+ P+P G E+ +GG
Sbjct: 3395 L--WKCGGDAVCEAPYAPIGRPVAGRSIYV---------LDGQLNPVPVGVAGELYIGGV 3443
Query: 536 NVTAGYFNNPGKTSEVYKVDERGMC---WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592
+ GY P T+E + D + TGD+ + DG +E + R VK++ G
Sbjct: 3444 GLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GF 3502
Query: 593 YISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVVP 629
I LG++EA L+ V ++ A VA VVP
Sbjct: 3503 RIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVP 3541
|
Length = 3956 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 26/127 (20%)
Query: 472 PI-GQAYGLTETCAGSTFS-----EWDDPSVGRV---GPPVPCCYIKLVSWDEGGYKTSD 522
PI Q YG TE A + + D R+ G P P + L+ DE
Sbjct: 307 PIFAQYYGQTE--APMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALL--DE-----DG 357
Query: 523 KPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEII 579
+ + + GEI V G V GY+N P +T+E ++ W +TGD+ + DG I+
Sbjct: 358 REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDG-----WLHTGDVAREDEDGFYYIV 412
Query: 580 DRKKDIV 586
DRKKD++
Sbjct: 413 DRKKDMI 419
|
Length = 524 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
F+ CG ++ + A I YG TE T + + + P
Sbjct: 257 YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY-PR 315
Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
+P + K L DE G + +GEIV+ G +V+ GY NNP KT+E + E G
Sbjct: 316 LPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYLNNPEKTAEAFFSHE-G 372
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI--HA 616
+ TGD G + DG L R +KL HG I L +E L S Y+++ ++
Sbjct: 373 QPAYRTGDAGTI-TDGQLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKY 430
Query: 617 DPFHN--YCVALVVPSHKALEK-WAHEASIKYEDLSE 650
+ H Y +A +VP + EK + +IK ++L +
Sbjct: 431 NKDHKVEYLIAAIVPETEDFEKEFQLTKAIK-KELKK 466
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
VA+++YTSG+TG PKGVM TH ++A + + DV L PLAH+
Sbjct: 95 VALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL-GLTPDDVVLMPSPLAHI 146
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 23/88 (26%)
Query: 266 PVDPSLPSQ-------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
P+DPS P + + A ++YTSGSTG PKGV+ITH NI A
Sbjct: 71 PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130
Query: 307 IKTLIPNPGRSDVYLAYLPLA---HVLE 331
++ D L + +A +LE
Sbjct: 131 EGAILGI-RPGDRVLQFASIAFDVSILE 157
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 127 DYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT---- 181
W TY E F+ A GL+ G R I A EW Q T
Sbjct: 41 GLRW-TYRE-FNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW------VLTQFATAKIG 92
Query: 182 --VVTIYSSLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT--------- 225
+VTI + L ++LN++ LI DS + L ++ L T
Sbjct: 93 AILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSA 152
Query: 226 ----IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP------SLPSQN 275
++ VI+ G EK G+ +F E+ LG+ +L +
Sbjct: 153 RLPELRRVIFL---GDEKHPGML---------NFDELLALGRAVDDAELAARQATL-DPD 199
Query: 276 GVAVIMYTSGSTGLPKGVMITHGNIV 301
I YTSG+TG PKG +TH NI+
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 521 SDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
+ GEIV + GY+++P KT+E ++ WF++GD+G + +G +
Sbjct: 358 DGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGG-----WFHSGDLGVMDEEGYIT 412
Query: 578 IIDRKKDIVKLQHGEYISLGKVEAAL 603
++DRKKD++K GE ++ +VE AL
Sbjct: 413 VVDRKKDMIK-TGGENVASREVEEAL 437
|
Length = 523 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 4e-08
Identities = 47/186 (25%), Positives = 69/186 (37%), Gaps = 57/186 (30%)
Query: 445 GRIRFMICGGAPLSAD-----SQRFINICMGAPIG---QA----YGLTETCAGSTFSEWD 492
R G P+ AD ++RF AP G +A YGL E +
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAERF------APAGFRPEAFLPCYGLAEATLAVSGGPPG 323
Query: 493 DPSVGR---------------------------VGPPVPCCYIKLVSWDEGGYKTSDKPM 525
V G P+P +++V E +P+
Sbjct: 324 AGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPL 377
Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEV--YKVDERGMCWFYTGDIGQVYPDGCLEIID 580
P GEI V G +V AGY+N P T+E ++ W TGD+G ++ DG L +
Sbjct: 378 PDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTG 436
Query: 581 RKKDIV 586
R KD++
Sbjct: 437 RLKDLI 442
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556
G G PVP +KLV DE G + +D + GE+ V G + AGY+N KT E + +
Sbjct: 330 GTSGKPVPGYEVKLV--DEDGEEVADGEI--GELWVRGDSSAAGYWNRREKTRETFVGE- 384
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W TGD DG R D++K+ G ++S +VE AL+ V
Sbjct: 385 ----WTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAV 432
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS 489
A++ ++ R L R ++CGG L D R + GA + YG TET G +
Sbjct: 758 LQALL-QASRVALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTY 816
Query: 490 EWDDPSVGRVGPPV--PCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNN 544
E D P+ P + L D P+P GE+ +GG + GY
Sbjct: 817 ELSDEERDFGNVPIGQPLANLGLYILD-----HYLNPVPVGVVGELYIGGAGLARGYHRR 871
Query: 545 PGKTSEVYKVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEA 601
P T+E + D G + TGD+ + DG +E + R VK++ G I LG++EA
Sbjct: 872 PALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIR-GFRIELGEIEA 930
Query: 602 ALISSDYVDNIMIHADP--FHNYCVALVVPSHKA 633
L++ V ++ A P VA +VP+ A
Sbjct: 931 RLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVA 964
|
Length = 3956 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-08
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLP 325
P+L + +A + YTSGST LPKGV ++HGN+VA I+ + NP DV +++LP
Sbjct: 161 PALQPDD-IAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNP--DDVIVSWLP 217
Query: 326 LAH 328
L H
Sbjct: 218 LYH 220
|
Length = 4334 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 6e-08
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 26/176 (14%)
Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEW-----DDPSVGRVG 500
+R ++C G L AD+Q + A + YG TE T D +GR
Sbjct: 772 LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGR-- 829
Query: 501 PPVP--CCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555
P+ CYI D +P+P GE+ + G + GY PG T+E +
Sbjct: 830 -PIANLACYI----LDANL-----EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPS 879
Query: 556 E--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
G + TGD+ + DG +E R VKL+ G I LG++EA L+ +V
Sbjct: 880 PFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLR-GLRIELGEIEARLLEHPWV 934
|
Length = 5163 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 26/167 (15%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA--GSTFSEW-DDPSVGRVGPPV 503
+R +I AP AD +R + G I + YG TE+ A +T + P G VG
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHP--GTVGKAA 330
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEI------VVGGFNVTAGYFNNPGKTSEVYKVDER 557
P ++ V DE G +P+P+GEI + G + T Y N P K +E+ +R
Sbjct: 331 PGAELRFV--DEDG-----RPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEI----DR 377
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
G + +GD+G + DG L + DRK+D+V + G I ++EA L
Sbjct: 378 GG-FITSGDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLH 422
|
Length = 509 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 477 YGLTETCAG----STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV- 531
YG+TET G + PS+GR G CY + D +P+P GEI
Sbjct: 319 YGMTETIVGIIGDRPGDKRRWPSIGRPG----FCYEAEIRDDHN------RPLPAGEIGE 368
Query: 532 -----VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V G + Y+ +P T++V + D W +TGD G V +G +DR+ +++
Sbjct: 369 ICIKGVPGKTIFKEYYLDPKATAKVLEADG----WLHTGDTGYVDEEGFFYFVDRRCNMI 424
Query: 587 KLQHGEYISLGKVEAALISSDYVDNIMI--HADPFHNYCV-ALVVP 629
K + GE +S ++E + + + +I++ D + + A VV
Sbjct: 425 K-RGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469
|
Length = 517 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 448 RFMICGGAPLS---ADS--QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
F+ CG L A +RF + A I YG TE T E D + +
Sbjct: 264 HFLFCGEE-LPHKTAKKLLERFPS----ATIYNTYGPTEATVAVTSIEITDEMLDQY-KR 317
Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558
+P Y K L+ DE G K D GEIV+ G +V+ GY NNP KT+E + G
Sbjct: 318 LPIGYAKPDSPLLIIDEEGTKLPD-GEQ-GEIVISGPSVSKGYLNNPEKTAEAFF-TFDG 374
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN-IMIHAD 617
++TGD G + DG L R +KL +G I L ++E L S YV++ +++ +
Sbjct: 375 QPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYN 432
Query: 618 PFH--NYCVALVVPSHKALEK 636
H Y +A VVP + E+
Sbjct: 433 KDHKVQYLIAYVVPKEEDFER 453
|
Length = 503 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCY 507
C G L AD R GAP+ YG TE A S + ++ + R G VP
Sbjct: 724 CSGEALPADLCREWQQLTGAPLHNLYGPTE--AAVDVSWYPAFGEELAAVR-GSSVP--- 777
Query: 508 IKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER 557
I W+ G + P+P G++ + G + GY P T+ + D ER
Sbjct: 778 IGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGER 837
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
M + TGD+ + DG +E + R D +K++ G+ I LG+++ A+ + V+ + HA
Sbjct: 838 -M--YRTGDVARWLDDGAVEYLGRSDDQLKIR-GQRIELGEIDRAMQALPDVEQAVTHA 892
|
Length = 1296 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ +A A L+ G D I E +E + + V + +
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
D L + L+++ V L+ S L +L V + L+++ E + G
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLP-VPAGLRSL--------CLDEPADLLCG------ 643
Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
S +P + + +A ++YTSGSTG PKGV I+HG + I
Sbjct: 644 ------------YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVI 688
|
Length = 3956 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529
G + + +G TET W +P G +G P P I ++ D G S + GE
Sbjct: 326 GIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDII--DPDG--KSCEVGEEGE 381
Query: 530 IV--------VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR 581
IV +G F GY+ +P +T+EV+ +++TGD + DG L + R
Sbjct: 382 IVIRTSDGKPLGLFM---GYYRDPERTAEVWHDG-----YYHTGDTAWMDEDGYLWFVGR 433
Query: 582 KKDIVKLQHGEYISLGKVEAALISSDYV 609
D++K G I +VE+ALI V
Sbjct: 434 ADDLIK-SSGYRIGPFEVESALIQHPAV 460
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 27/194 (13%)
Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPIGQAYGLTETCAGSTFSEW 491
I S+R VL GAP+ D +RF+ M A I YG TE ++
Sbjct: 196 IQLPSLRRVLSA--------GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGR 247
Query: 492 D-------DPSVGR---VGPPVPCCYIKLVSWDEGG--YKTSDKPMPR---GEIVVGGFN 536
+ P G VG PVP ++++ D+G D +P GEI+V G +
Sbjct: 248 EVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPH 307
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
VT Y+N P T + K+ + W GD+G G L RK V+ G ++
Sbjct: 308 VTREYYNRPEATK-LAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTV 366
Query: 597 GKVEAALISSDYVD 610
VE V
Sbjct: 367 P-VEQVFNRHPGVR 379
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 86/372 (23%), Positives = 134/372 (36%), Gaps = 80/372 (21%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE---S 336
++YT G+TG+PKGVM +I G ++AA +
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLG--------GPDFATGEPTLEELAKQVAAGGAGT 59
Query: 337 IMLCAGCAI-GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395
L A + G G L ++ + G VL P FD R V + VE
Sbjct: 60 RFLPACPLMHGAGQWLALSALFA-------GGTVVLLPDDK------FDPDR--VWRTVE 104
Query: 396 EKGGLTKNLFNIG--YKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC 452
+ T L +G + R L A+E + G + L + R +
Sbjct: 105 KHRVNT--LVIVGDAFARPLLEALEAA--GRYDLSSL------------------RAISS 142
Query: 453 GGAPLSADS-QRFINICMGAPIGQAYGLTETCA-GSTFSEWDDPSVGRVGPPVPCCYIKL 510
GA S + Q + + + A G +ET GS+ S S G +
Sbjct: 143 SGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGAS--ATGKFELGPDTVV 200
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570
+ ++G G I GG V GY+ +P KT++ ++ G+ + GD +V
Sbjct: 201 LD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFRE-IDGVRYAVPGDFARV 256
Query: 571 YPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVV-- 628
DG + ++ R + GE + +VE AL + V AD ALVV
Sbjct: 257 EADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDV------AD-------ALVVGV 302
Query: 629 PSHKALEKWAHE 640
P E+W
Sbjct: 303 PD----ERWGQR 310
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 29/183 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ C FA+ L + G R AI E IA C R ++
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149
Query: 192 DALIHSLNETQVTTLICDSKQ--------LKKL--SAVSSSLKTIKNVIYFENDGSEKDS 241
+AL +N+ +I + LK + A+ ++++V+ G+
Sbjct: 150 EALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208
Query: 242 GVSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
G W S++ E E + DP I+YTSGSTG PKGV+
Sbjct: 209 -WVEGRDVWWHDLMAKASAYCEPEPMD---SEDPLF--------ILYTSGSTGKPKGVLH 256
Query: 296 THG 298
T G
Sbjct: 257 TTG 259
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 8e-07
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 32/184 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV--TIYSSL 189
TY E++ C FA+ L + G R AI E IA C R I + +++
Sbjct: 80 TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACAR--IGAIHSVVFAGF 137
Query: 190 GEDALIHSLNETQVTTLI-CDS-----KQLKKLSAVSSSLK---TIKNVIYFENDGSEKD 240
+AL +N+ + LI D K + V +L+ +++ VI + G E
Sbjct: 138 SAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVP 197
Query: 241 SGVSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
+ G W S + E E + DP I+YTSGSTG PKGV+
Sbjct: 198 --MVEGRDVWWHDLMAKASPYCEPEPMD---AEDPLF--------ILYTSGSTGKPKGVV 244
Query: 295 ITHG 298
T G
Sbjct: 245 HTTG 248
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 18/55 (32%)
Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
P+DP+ P + + +A ++YTSGSTG PKGV I H N A
Sbjct: 78 PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 38/176 (21%), Positives = 54/176 (30%), Gaps = 31/176 (17%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TYGE+ RA + A+ L G A++ E +A G V I
Sbjct: 14 TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L ++ D + A
Sbjct: 74 ERRAAILARAGARAVLTDPGLAQPEEAPDL-----------------------------L 104
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
V + P P +A +++TSGSTG PKGVMITH V T +
Sbjct: 105 VVADDAAAAESPAPPPPRVDPDD--LAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 68/198 (34%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G E T+G++ D + A+ L G R + E IA ++ V +
Sbjct: 2 GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
G DA+ H L ++ L+ DGS+
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVT--------------------------DGSD------- 88
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
DP A+++YTSG+TG PKG + H ++
Sbjct: 89 ----------------------DP--------AILIYTSGTTGPPKGALHGHRVLLGHLP 118
Query: 306 AIKT---LIPNPGRSDVY 320
++ L P PG DV+
Sbjct: 119 GVELYFELAPRPG--DVF 134
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 127 DYEWQTYGEVFDRACSF----------ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCF 176
DY + E DR ++ A+ L+ G+ D A+ + I F G
Sbjct: 33 DYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGAL 92
Query: 177 RQSITVVTIYSSLGEDALIHSLNETQVTTLIC-DSKQLKKLSAVSSSLKTIKNVIYFEND 235
+ VV + GE AL H L+++ LI D L ++ + +I E+D
Sbjct: 93 KAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDD 152
Query: 236 GSEKDSGVSGGI-SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
K I ++ + ++++ K G +P + + + VA++ YT G+TGLPKG M
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAM 211
Query: 295 ITHGNIVATAAAIKTLIPNPGRSDV-----YLAYLPLAHVLEL 332
+THGN+ +A +I + P R+ + LPL H+ L
Sbjct: 212 LTHGNL-TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325
P+D VA+++ TSG+TG PKG M+T + A+A A + PG+ +L LP
Sbjct: 32 PIDD------DVALVVATSGTTGTPKGAMLTAAALTASADATHDRLGGPGQ---WLLALP 82
Query: 326 LAHV 329
H+
Sbjct: 83 AHHI 86
|
Length = 358 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 35/215 (16%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV 503
++ + GGA SA + R + G + Q +G+ E ++ DDP+ G P+
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEGLV--NYTRLDDPAEIIFTTQGRPM 357
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
++ D+ G P+ GE ++ G GY+ P + + D G
Sbjct: 358 -SPDDEVRVVDDHG-----NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAF--DAEG-- 407
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA---- 616
++YTGD+ ++ P+G + ++ R KD + + GE I+ ++E L++ V A
Sbjct: 408 FYYTGDLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAV----HDAALVS 462
Query: 617 --DPF--HNYCVALVV--PSHKALE--KWAHEASI 643
D C +VV P+ KA + ++ E +
Sbjct: 463 MPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGL 497
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTET--CAGSTFSEWDDPSVGRVGPP 502
++R G PL+ + R+ +G I YG TET G+ + + G +G P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMC 560
+P ++ D+ G +D + I V +GY+++P KT+E+
Sbjct: 265 LPG--YRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGR----- 317
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
W+ TGD+ + DG I R D++ G I VE+AL+ V
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISA-GYRIGPFDVESALLEHPAV 365
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 62/269 (23%)
Query: 94 SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153
++ D F+ DG ++ TYG++ + A+ LV G
Sbjct: 3 NNLFDALRAAFADRDAPFIETPDGLRY-----------TYGDLDAASARLANLLVALGVK 51
Query: 154 VDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS------LG--EDALIHSLNETQ 202
R A+ E E + R + T Y+ +G E AL+
Sbjct: 52 PGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALV------- 104
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
+CD LS ++++ +V + DG+ + F V
Sbjct: 105 ----VCDPANFAWLSKIAAAAGAP-HVETLDADGTGSLLEAAAAAP----DDFETVP--- 152
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-----TLIPNPGRS 317
R D +A I+YTSG+TG KG M++HGN+++ A + T P
Sbjct: 153 -RGADD--------LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFT----PD-- 197
Query: 318 DVYLAYLPLAHVLEL-AAESIMLCAGCAI 345
DV + LP+ H L A ++ L AG ++
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASM 226
|
Length = 504 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA----TAAAIKT 309
F++ G R P + VA + YT G+TG+ KG + H NIVA A ++
Sbjct: 183 RFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP 242
Query: 310 LIPNPGRSD--VYLAYLPLAHVLELAAESIM 338
R D ++ LPL H+ L ++
Sbjct: 243 AFEKKPRPDQLNFVCALPLYHIFALTVCGLL 273
|
Length = 557 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
P + V ++YTSG+TG PKGVM T NIV A + G DV L P+A
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-----GADDVILMASPMA 248
Query: 328 H 328
H
Sbjct: 249 H 249
|
Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 28/170 (16%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ RA A L+ G D + E VE +A + V +
Sbjct: 3122 SYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPR 3181
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + + ++ V L+ + L++L A + D G S
Sbjct: 3182 ERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTL------------DRLDLNGYSE-- 3227
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+P + +N +A ++YTSGSTG PKGV + HG +
Sbjct: 3228 ------------NNP-STRVMGEN-LAYVIYTSGSTGKPKGVGVRHGALA 3263
|
Length = 3956 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)
Query: 129 EWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
E T+ + RA + A L + G D R + C E +
Sbjct: 37 EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNK 96
Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
L D ++H +N + ++ D + ++L + ++ V++ S+ DS +
Sbjct: 97 QLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFI--GPSDADSAAAHMP 154
Query: 248 SNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
V S+ + L RS V P L A I Y++G+TG PKGV+ +H ++ +
Sbjct: 155 EGIKVYSYEAL--LDGRSTVYDWPELDETTAAA-ICYSTGTTGAPKGVVYSHRSLYLQSL 211
Query: 306 AIKT---LIPNPGRSDVYLAYLPLAHVL 330
+++T L G S +L +P+ HVL
Sbjct: 212 SLRTTDSLAVTHGES--FLCCVPIYHVL 237
|
Length = 576 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
R+R G L A+ + G I G TE + D G G PVP
Sbjct: 279 RLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPG 338
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTG 565
++LV D G + +P GE+++ G + Y+NN KT + ++ + W +G
Sbjct: 339 YRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTFQGE-----WTRSG 389
Query: 566 DIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D DG R D++K+ G Y+S ++E+ALI
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIESALIQ 428
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 43/178 (24%), Positives = 56/178 (31%), Gaps = 56/178 (31%)
Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
TY E+ ASGL G R I E +A + V I+S G
Sbjct: 8 WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
DA+ L ++K L DG +
Sbjct: 68 PDAVATRLQ-------DAEAKVL------------------ITADGFLRR---------- 92
Query: 251 TVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
GKR + DP A+I+YTSG+TG PKG + TH AA
Sbjct: 93 -----------GKRVDLKDDP--------AMIIYTSGTTGKPKGTVHTHAGFPVKAAK 131
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
P+ S P A I++TSGSTG PKGVM+ IV
Sbjct: 591 PLQLSQPHH--TAYIIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-06
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSEWDDPSVGRVGP-- 501
+R++ G + ++++ G I + YG+TET A +T +VGR+ P
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 502 -----PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF--NNPGKTSEVYKV 554
PVP DEGG + V G NV GY NPG V +
Sbjct: 969 EYRLEPVP-------GIDEGG-----------RLFVRGPNVMLGYLRAENPG----VLEP 1006
Query: 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAA 602
G W+ TGDI + +G + I R K K+ GE ISL VE
Sbjct: 1007 PADG--WYDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEEL 1051
|
Length = 1140 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 45/204 (22%), Positives = 67/204 (32%), Gaps = 55/204 (26%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+ ++ A + A + R A+LA + +A G + VV + G
Sbjct: 27 SRSDLAGAATAVAERVAGAR-----RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV 81
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
H L DS L + +V
Sbjct: 82 AERRHILA---------DSGAQAWLGPAPDDPAGLPHV---------------------- 110
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL- 310
V L RS P + A+I+YTSG+TG PKGV+++ A AA + L
Sbjct: 111 -----PVR-LHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRR---AIAADLDALA 161
Query: 311 -----IPNPGRSDVYLAYLPLAHV 329
+ DV + LPL HV
Sbjct: 162 EAWQWTAD----DVLVHGLPLFHV 181
|
Length = 471 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
VAVI++TSG+ LPKGV +TH N++A A +P DV +++LP H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFH 235
|
Length = 539 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 453 GGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
GGA + A ++R + G + YGLTET A + + D P + +G P +++
Sbjct: 313 GGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVI 371
Query: 512 SWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIG 568
+ + +P GEIVV G V GY+N P T+E + ++ G +F TGD+G
Sbjct: 372 DPETL------EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF-IEIDGKRFFRTGDLG 424
Query: 569 QVYPDGCLEIIDRKK 583
++ +G I DR K
Sbjct: 425 RMDEEGYFFITDRLK 439
|
Length = 546 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
+P + A I++TSGSTG PKGV+ TH A A+++L D LA P
Sbjct: 80 GIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-IREGDRDLAAFPP 135
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ +++ R + A L G D RA ILA +E+ +AF G + + V + G
Sbjct: 37 TWSQLYRRTLNVAEELRRHGSTGD-RAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG- 94
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
++ +V+ ++ D+ S V ++ + +V + G +
Sbjct: 95 -----GAHDERVSAVLRDTSP----SVVLTTSAVVDDVTEY----VAPQPG-------QS 134
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIVA 302
EV+ L SP ++ A + YTSGST P GVM++H N++A
Sbjct: 135 APPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA 187
|
Length = 578 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 261 LGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
L S +P++ + +A ++YTSGSTG PKG HG +V
Sbjct: 1703 LEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745
|
Length = 3956 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
R+R + G PL+ + + G I YG TET A S G +G P+P
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPG 259
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEVYKVDERG 558
+ L+ DEG + P+ GEI + G GY +P KT+ +
Sbjct: 260 YRVVLLD-DEGK----EIPVTEGEIALDLGDRPIGLM---LGYMGDPEKTAAAF-RGG-- 308
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY-ISLGKVEAALISSDYV 609
++ TGD DG L + R D+ K +Y IS +VE+AL+ V
Sbjct: 309 --YYRTGDKAYRDEDGYLWFVGRADDVFK--SSDYRISPFEVESALLEHPAV 356
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFR-QSITV-VTIYSSL 189
T+ E+ DR + A L G R IL E+ + +I V V +
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 190 GEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
E A + +++ ++ ++ +AV + + V+ V+GG S+
Sbjct: 104 PEIAFL--VSDCGAHVVVTEAALAPVATAVRDIVPLLSTVV------------VAGGSSD 149
Query: 250 WTVSSFSEV--EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
+V + ++ E +PVD +P + A+IMYTSG+TG PKG ++TH N+ A
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVD--IP-NDSPALIMYTSGTTGRPKGAVLTHANLTGQAM-- 204
Query: 308 KTLIPNPG---RSDVYLAYLPLAHVLELAAESIMLCAG 342
T + G SDV +PL H+ + + L G
Sbjct: 205 -TCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLG 241
|
Length = 542 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTS----------EVYKVDERGMC--WFYTGDIGQVYPDGC 575
GEI V G VTA Y+++P + +V ++R W TGD+G V DG
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445
Query: 576 LEIIDRKKDIVKLQHGEYI 594
L I DR +D+++ GE+I
Sbjct: 446 LTIHDRARDVIR-SGGEWI 463
|
Length = 576 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV-YLAYLPLAHVLELAAE 335
A +YTSG+TGLPK +++H A A+ + DV YL LPL H +
Sbjct: 83 PAFYIYTSGTTGLPKAAIMSHRR-WLRAGAVFGGLGLLKPDDVLYLC-LPLYH-----SN 135
Query: 336 SIMLCAGCAIGYGSTL 351
++ + A+ G++L
Sbjct: 136 ALTVGWSSALAAGASL 151
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 62/225 (27%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ E+ + + A+ G+ A+ E +E+ + G + + I S+L
Sbjct: 5 TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
++L+H + ++ LI
Sbjct: 65 ESLLHCITVSKAKALI-------------------------------------------- 80
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVA-----VIMYTSGSTGLPKGVMITHGNIVATAAA 306
F+ ++ L +S +P PSQ+ V +YTSG+TGLPK +I H AA
Sbjct: 81 ---FNLLDPLLTQSSTEP--PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAG 135
Query: 307 I-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
P DV LPL H +A IM G A+ +GST
Sbjct: 136 AYYAFGMRP--EDVVYDCLPLYH----SAGGIM-GVGQALLHGST 173
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
Y E+ RA A L+ G D + E +E +A + V +
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ L + L ++ V L+ S +KL +++ ++ V+ + +
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRKLP-LAAGVQ----VLDLDRPAAW------------- 639
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
+ +SE +P P +A ++YTSGSTG PKG H +
Sbjct: 640 LEGYSE------ENPGTELNPEN--LAYVIYTSGSTGKPKGAGNRHRALSN 682
|
Length = 5163 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGS 286
++ E+ +E G+ G+ V S + ++L + + + + + ++++TSG+
Sbjct: 104 LVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGT 163
Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGC 343
+G PK V TH + + + G DV +PL H V +A ++ L AG
Sbjct: 164 SGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAV--MAGWAVALAAGA 220
Query: 344 AI 345
+I
Sbjct: 221 SI 222
|
Length = 529 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 19/212 (8%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ A+ L + G A L E A G I I L
Sbjct: 60 TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGI-ANPINPLLEP 118
Query: 192 DALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246
+ + L L+ K++ V ++L ++ V+ E D + G
Sbjct: 119 EQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV--EVDLARYLPGPKRL 176
Query: 247 ISNWT-------VSSF-SEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
+ F +E+ + + VA +T G+TG+PK THG
Sbjct: 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHG 236
Query: 299 NIVATAAAIKTLI-PNPGRSDVYLAYLPLAHV 329
N VA A L+ PG D LPL HV
Sbjct: 237 NEVANAWLGALLLGLGPG--DTVFCGLPLFHV 266
|
Length = 632 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--GEDALIHSLNETQVTTLICDSKQLK 214
+ A+ + C E+ + G + +V I + L E A I L +Q + L+ ++
Sbjct: 64 KVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWI--LQNSQASLLVTSAQFYP 121
Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
+ T I D GVS ++T + L P+ S
Sbjct: 122 MYRQIQQEDATPLRHICLTRVALPADDGVS----SFTQLKAQQPATLCYAPPL-----ST 172
Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR-SDVYLAYLPLAHV 329
+ A I++TSG+T PKGV+ITH N+ A + R DVYL +P H+
Sbjct: 173 DDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 447 IRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS---EW-DDPSVGRVGP 501
+R I AP + + I+ G I + Y +E G T +W P G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMID-WWGPIIHEYYASSEGG-GVTVITSEDWLAHP--GSVGK 319
Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG---YFNNPGKTSEVYKVDERG 558
V ++++ DE G +P GEI F + Y N+P KT+
Sbjct: 320 AV-LGEVRIL--DEDG-----NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR----NP 367
Query: 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W GD+G + DG L + DRK D++
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMI 395
|
Length = 502 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 268 DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
D L + + VA+I +TSG+TGLPKG M H +I+A A + P DV++ PLA
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLA 199
Query: 328 HVLELAA 334
L
Sbjct: 200 FTFGLGG 206
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
G + V G V A Y+ G+ +D+ G +F TGD+ + G + I DR KD++K
Sbjct: 385 GRLKVRGPAVAAAYYRVDGEI-----LDDDG--FFDTGDVATIDAYGYMRITDRSKDVIK 437
Query: 588 LQHGEYIS 595
GE+IS
Sbjct: 438 -SGGEWIS 444
|
Length = 542 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEW----DDPSVGRV 499
+R + GG L A+ R + + YG TET T W +D +
Sbjct: 1388 TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTH--WQCQAEDGERSPI 1445
Query: 500 GPPVP--CCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEVYKV 554
G P+ C + +P G E+ +GG + GY P T+E +
Sbjct: 1446 GRPLGNVLCRV---------LDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVP 1496
Query: 555 D---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D E G + TGD + DG LE + R VKL+ G + +++A L++ V
Sbjct: 1497 DPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLR-GFRVEPEEIQARLLAQPGV 1553
|
Length = 4334 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 13/147 (8%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRVGP 501
+R + GG+ A RFI G Q YGL+ET + DD S+ G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 502 PVPCCYIKLVSWDEGGYKTSD--KPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
P P + L + D G G + + GY+NNP +T+EV +D
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDG--- 402
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIV 586
W TGD+ + DG I R +++
Sbjct: 403 -WVNTGDLLERREDGFFYIKGRSSEMI 428
|
Length = 540 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 9e-05
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ DR C A+ L + G I +E IA C R +++
Sbjct: 122 TYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSA 181
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISN 249
++L + + C K + +AV KTI K+++ D S K+ GVS GI
Sbjct: 182 ESLAQRI-------VDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN-GVSVGIC- 232
Query: 250 WTVSSFSEVEKLGKR---------SPVDPSLPSQNGVA--------VIMYTSGSTGLPKG 292
T + +++ + V P+ P++ V ++YTSGSTG PKG
Sbjct: 233 LTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 292
Query: 293 VM-ITHGNIVATAAAIK 308
V+ T G +V TA K
Sbjct: 293 VLHTTGGYMVYTATTFK 309
|
Length = 666 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPV 503
+R + G PL+ + + +G PI + TET A + P G +G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVV--GGFNVTAGYFNNPGKTSEVYKVDERGMCW 561
P ++ D G P GE+ + G ++ GY N + + + W
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDG-----W 321
Query: 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604
+ TGD+ DG + R D++K G + +VE+AL+
Sbjct: 322 YLTGDLAYRDEDGYFWFVGRADDVIK-TAGHLVGPFEVESALM 363
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 266 PVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
P D + I++TSG+TG PKGV I+H N+V
Sbjct: 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 62/236 (26%), Positives = 82/236 (34%), Gaps = 62/236 (26%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E++D A L G R I E IA C R +G
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR-----------IGA 123
Query: 192 DALIHSL-----NETQVTTLICDSK-----------------QLKKL--SAVS-SSLKTI 226
IHS+ ++ + I D+K K L A+ S K
Sbjct: 124 ---IHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180
Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
K +I N G G +W E + K PVD I+YTSG+
Sbjct: 181 KVLIL--NRGQVPAPLKPGRDLDWA-------ELMAKARPVDCVPVESTDPLYILYTSGT 231
Query: 287 TGLPKGVM-ITHGNIVATAAAIKTLIP-NPGR-----SDV-------YLAYLPLAH 328
TG PKGV+ T G VA +++ + PG SDV Y+ Y PL H
Sbjct: 232 TGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 87/378 (23%), Positives = 133/378 (35%), Gaps = 98/378 (25%)
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI---VATAAAIKTLIPNPGRSD 318
G +P P+ + VA + G+TG PK + TH + V +A I
Sbjct: 178 GLFTPAPPADAGE--VAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ----QT 231
Query: 319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTL 375
VYL LP AA + L + A+G G T+ + S P L
Sbjct: 232 VYLCALP-------AAHNFPLSSPGALGVFLAGGTVVLAPDPS--------------PEL 270
Query: 376 MAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW-DAI 434
P I +R V V LW A
Sbjct: 271 --CFPLI-ERHGVTVTALVP------------------PLA------------SLWLQAA 297
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
+ RA L +R + GGA LSA R + +G + Q +G+ E ++ DDP
Sbjct: 298 --EWERADLSS-LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV--NYTRLDDP 352
Query: 495 S---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKT 548
+ G P+ ++ D G P+ GE+ + G GY+ P
Sbjct: 353 PEIIIHTQGRPL-SPDDEVRVVDADG-----NPVAPGEVGELLTRGPYTIRGYYRAPEHN 406
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
+ + D G ++ +GD+ + PDG L + R KD + + GE I+ +VE L+
Sbjct: 407 ARAF--DADG--FYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLR--- 458
Query: 609 VDNIMIHADPFHNYCVAL 626
H VA+
Sbjct: 459 ------HPAVHDAALVAM 470
|
Length = 542 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 61/205 (29%), Positives = 85/205 (41%), Gaps = 39/205 (19%)
Query: 447 IRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETC-------AGSTFSEWDDPSV-- 496
+R I GG L+ + QR AYG TET A E SV
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEE-GAASVPI 2508
Query: 497 GR-VGPPVPCCYI---KLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
GR VG V YI L +G GE+ VGG + GY + PG T+E +
Sbjct: 2509 GRVVGARV--AYILDADLALVPQGA---------TGELYVGGAGLAQGYHDRPGLTAERF 2557
Query: 553 KVD---ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
D G + TGD+ ++ DG +E + R VK++ G I LG++E+ L+ V
Sbjct: 2558 VADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIR-GFRIELGEIESRLLEHPAV 2616
Query: 610 DNIMIHADPFHNYCVALVVPSHKAL 634
++ +AL PS K L
Sbjct: 2617 REAVV---------LALDTPSGKQL 2632
|
Length = 4334 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
G++ V G V YF VD WF TGD+ + DG ++I DR KD++K
Sbjct: 385 GDLQVRGPWVIDRYFRGDASPL----VDG----WFPTGDVATIDADGFMQITDRSKDVIK 436
Query: 588 LQHGEYISLGKVE 600
GE+IS +E
Sbjct: 437 -SGGEWISSIDIE 448
|
Length = 539 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLEL 332
A+I++TSGS G PKGV+ +H +++A IKT+ D +++ LPL H L
Sbjct: 368 ALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN-DRFMSALPLFHSFGL 421
|
Length = 718 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +++++ C F+ L+N + + I +E IA C R T ++
Sbjct: 94 TYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153
Query: 192 DALIHSLNETQVTTLICDSKQ---LKKLSAVSSSLK------TIK--NVI-YFEND-GSE 238
+LI + ET LI + ++ + +LK T K NVI F ND SE
Sbjct: 154 KSLIDRI-ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212
Query: 239 KDSGVSGGISNW--TVSSFSEVEKLGKRS--------PVDPSLPSQNGVAVIMYTSGSTG 288
D I T+S + E++K+ + + PV+ S P I+YTSG+TG
Sbjct: 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHP-----LYILYTSGTTG 267
Query: 289 LPKGVMITHG-NIV 301
K V+ ++G ++V
Sbjct: 268 NSKAVVRSNGPHLV 281
|
Length = 647 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI------VATAAAIKTL 310
E E G P P Q A + YTSG+TGLPKG +I ++T A ++
Sbjct: 136 EPESAGPPIEDPPREPEQ--PAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRH- 192
Query: 311 IPNPGRSDVYLAYLPLAHVL 330
GR +V L +PL HV+
Sbjct: 193 ----GRHNVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
+ + + P S +I++TSG++G PKGVM++ N+ TA L
Sbjct: 122 DALEPADTPSIPPERVS-----LILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAH 176
Query: 317 SDVYLAYLPLAHVLELA 333
S +L P+ H++ L
Sbjct: 177 S-SFLCDAPMFHIIGLI 192
|
Length = 488 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
A + TSGSTGLPK + T +A+A + +L+P D +L LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVY------KVDERGMCWFYTGDIGQVYPDGCLEIIDR 581
GE+ V G V GY +P +T+ + ER + TGD+ + DG LE + R
Sbjct: 4067 GELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGER---LYRTGDLARRRSDGVLEYVGR 4123
Query: 582 KKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPFHNYCVALVVPSHKALE 635
VK++ G I LG++EA L V + + + V +VP L
Sbjct: 4124 IDHQVKIR-GYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLA 4178
|
Length = 4334 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 46/210 (21%)
Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--- 189
Y + RA + A L+ G R A++AET ++ AF C Y+ L
Sbjct: 52 YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPV 102
Query: 190 ---------GEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGSE 238
G ++ I QL+ + SA +++ T ++ + N+ +
Sbjct: 103 PLPLPMGFGGRESYI---------------AQLRGMLASAQPAAIITPDELLPWVNEATH 147
Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
+ + + + F + + + V P+ + +A + Y+SGST P+GV+ITH
Sbjct: 148 GNPLLHVL----SHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199
Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
++A AI D +++LP H
Sbjct: 200 ALMANLRAISHDGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
SLP A ++YTSGSTG PKGV+++HG I A+
Sbjct: 2330 SLPQHQ--AYLIYTSGSTGKPKGVVVSHGEIAMHCQAV 2365
|
Length = 4334 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV------GRVGPPVPCC 506
GGA LS R I +G + Q +G+ E T DD GR P P
Sbjct: 308 GGARLSETLARRIPAELGCQLQQVFGMAEGLVNYT--RLDDSDERIFTTQGR--PMSPDD 363
Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT------AGYFNNPGKTSEVYKVDERGMC 560
+ + D G P+P+GE+ G +T GY+ +P + + D G
Sbjct: 364 EVWVA--DADG-----NPLPQGEV---GRLMTRGPYTFRGYYKSPQHNASAF--DANG-- 409
Query: 561 WFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
++ +GD+ + PDG + ++ R+KD + + GE I+ ++E L+ V IHA
Sbjct: 410 FYCSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIENLLLRHPAV----IHA 460
|
Length = 536 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R A+GL+ G R A++ + C E+ A+ + V I ++L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 192 DALIHSLNETQVTTLICD 209
+ L H L+ + ++ D
Sbjct: 65 EELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ D A FA+ L G + R +L E AF C + V + L
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71
Query: 192 DALIHSLNETQVTTLICD 209
L H L+++ L+ +
Sbjct: 72 QDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 280 IMYTSGSTGLPKGVMITHGNIV 301
I+YTSGSTG PKGV I+H N+V
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 475 QAYGLTETCAGSTFSEWDDPSVGR-VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---I 530
Q YG TE T + + P VG P+ + +VS + + P+ GE +
Sbjct: 330 QGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVS------EETKVPVSSGETGLV 383
Query: 531 VVGGFNVTAGYF-NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
+ G ++ +GY + G+ V+ G W+ TGD+G V G L + R VK+
Sbjct: 384 LTRGTSLFSGYLGEDFGQGF----VELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG 439
Query: 590 HGEYISLGKVEAALI 604
E +SL +E+ L+
Sbjct: 440 -AEMVSLEALESILM 453
|
Length = 539 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
A ++YTSG+TGLPKG I+ + T+ + + Y +PL H +
Sbjct: 89 PAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC-MPLYH-----GTA 142
Query: 337 IMLCAGCAIGYGSTL 351
L +G G TL
Sbjct: 143 AFLGLCYCLGSGGTL 157
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 132 TYGEVFDRACSFASGLVNFG--HNVDTRAAILAET----CVEWF-IAFQGCFRQSITVVT 184
TY EV R+ A L+ DT A +L + W +A GC
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWI-WLGLAKLGC-----PTAF 58
Query: 185 IYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
+ +++ +L+H L+ D + L+ + + +L+ + +++ + S
Sbjct: 59 LNTNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTS-----PP 113
Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
G+ + + ++ S A+ +YTSG+TGLPK I+H ++
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRS--TALYIYTSGTTGLPKAARISHLRVLQ-C 170
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
+ + +L VY LPL H + +++ GC IG G+TL +
Sbjct: 171 SGMLSLCGVTADDVVYTT-LPLYHS----SGALLGIVGC-IGLGATLVL 213
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 275 NGVAVIMYTSGSTGLPKGVMIT 296
+ +A ++YTSGSTGLPKGVM+
Sbjct: 3869 DNLAYVIYTSGSTGLPKGVMVE 3890
|
Length = 4334 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 63/192 (32%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
+Y E+ + + FA+ L + G R L E ++A G + ++S+ G
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + L + LI + +L +
Sbjct: 62 EPIRDRLELGEAKVLIT-TPELYE------------------------------------ 84
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA---TAAAIK 308
+ P DP+L + +TSG+TG PKGV+ H +VA TA +
Sbjct: 85 -----------RTDPEDPAL--------LHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125
Query: 309 TLIPNPGRSDVY 320
L P+ DVY
Sbjct: 126 DLRPD----DVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYK--------------VDERGMCWFYTGDIGQVYPD 573
GEI + G N+ GY+ P +T+ ++ + + W TGD G VY D
Sbjct: 419 GEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDAL-WVRTGDYG-VYFD 476
Query: 574 GCLEIIDRKKDIV 586
G L I R KD+V
Sbjct: 477 GELYITGRVKDLV 489
|
Length = 631 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY E+ +R+ A + G AI E + + R + + S L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ ++++ LI + +L A+ +++ + + DG
Sbjct: 86 AEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDG--------------E 131
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM--ITHGNIVATAAAIKT 309
+ F + P P + ++ ++Y+SG+TG PKG+ +
Sbjct: 132 LEGFVGYAEAVAGLPATP-IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF 190
Query: 310 LIPNPG-RSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
L G RSD VYL+ PL H A +++ G G+ + M
Sbjct: 191 LQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG-----GTVIVM 231
|
Length = 511 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 101/442 (22%), Positives = 165/442 (37%), Gaps = 112/442 (25%)
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
VV I + DAL +L ++T++ D++ ++++ ++ I D
Sbjct: 112 VVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVI-------------DP 158
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
+G E+ G R V +++ TSG+TG PKGV +
Sbjct: 159 ATAGA------------EESGGRPAVAAP------GRIVLLTSGTTGKPKGV--PRAPQL 198
Query: 302 ATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
+A + I + R S + +A +P+ H L L ML A+G G+ LT
Sbjct: 199 RSAVGVWVTILDRTRLRTGSRISVA-MPMFHGLGLG----MLMLTIALG-GTVLTHRHFD 252
Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
++ S+ + AVP + R+ E + +V + L +
Sbjct: 253 AE---AALAQASLHRADAFTAVPVVLARILE-LPPRVRARNPLPQ--------------- 293
Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQA 476
+R ++ G L QRF++ G +
Sbjct: 294 -----------------------------LRVVMSSGDRLDPTLGQRFMD-TYGDILYNG 323
Query: 477 YGLTETCAGS--TFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533
YG TE G+ T ++ D P VG PV C ++++ D P G I VG
Sbjct: 324 YGSTEVGIGALATPADLRDAPET--VGKPVAGCPVRIL--DRNNRPVG--PRVTGRIFVG 377
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593
G Y + GK VD GM TGD+G + G L I+ R+ D++ + GE
Sbjct: 378 GELAGTRYTDGGGKAV----VD--GMT--STGDMGYLDNAGRLFIVGREDDMI-ISGGEN 428
Query: 594 ISLGKVEAALIS-SDYVDNIMI 614
+ VE AL + DN +I
Sbjct: 429 VYPRAVENALAAHPAVADNAVI 450
|
Length = 516 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 32/231 (13%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ +W +Y E+ RA + A+GL G A + E++I F + + V
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDGSEKD 240
S + L ++ + I D + S L T++N+I E
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNII-VAGQTGEA- 161
Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
F +E + P+ + VA + GSTG PK + TH +
Sbjct: 162 ------------ELFLWLESPAEPVKFPPTKSDE--VAFFQLSGGSTGTPKLIPRTHNDY 207
Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA---AESIMLCAGCAI 345
V + I L YL LP AH L+ A + GC +
Sbjct: 208 YYSVRRSVEICWLTQ----QTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 254
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 30/151 (19%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF---SEW-DDP-SVGRV-- 499
+ I AP + + G I + Y TE G T EW P +VGR
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEG-LGFTACDSEEWLAHPGTVGRAMF 335
Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG----YFNNPGKTSEVYKVD 555
G D+ G +P GE G G Y N+P KT+E
Sbjct: 336 GDLHIL--------DDDG-----AELPPGEP--GTIWFEGGRPFEYLNDPAKTAEAR--H 378
Query: 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
G W GDIG V DG L + DR ++
Sbjct: 379 PDGT-WSTVGDIGYVDEDGYLYLTDRAAFMI 408
|
Length = 511 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 18/168 (10%)
Query: 470 GAPIGQAYGLTETCAGSTFSEW---DDPSVGRVG---PPVPCCYIKLVSWDEGGYKTSDK 523
G P+ YG +E A + D SV G P P ++ +G +
Sbjct: 319 GVPLTGLYGSSEVQA--LVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGE 376
Query: 524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583
GEI + ++ GY +NP T+ D +F TGD+G DG R
Sbjct: 377 S---GEIEIRAPSLMRGYLDNPDATARALTDDG----YFRTGDLGYTRGDGQFVYQTRMG 429
Query: 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNY--CVALVVP 629
D ++L G ++ ++E AL + V + VA V+P
Sbjct: 430 DSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIP 476
|
Length = 540 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 40/174 (22%)
Query: 439 VRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTE-TCA----- 484
V V G +R + GG P+ D +RF AP G +YGL E TCA
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAM--APFGFDAGAAAPSYGLAESTCAVTVPV 323
Query: 485 ---GSTFSEWDDPSVG------RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF 535
G E +G P+P +++ D + + + GEI + G
Sbjct: 324 PGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAA-GVAGREI--GEIEIRGA 380
Query: 536 NVTAGYF-NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
++ +GY P + WF TGD+G + DG L + R K+++ +
Sbjct: 381 SMMSGYLGQAPIDPDD----------WFPTGDLGYLV-DGGLVVCGRAKELITV 423
|
Length = 525 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 744 | |||
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.96 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.89 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.81 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.76 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.62 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.94 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.68 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.05 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.86 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.69 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.65 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 95.9 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.42 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.07 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 86.27 |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-114 Score=883.13 Aligned_cols=654 Identities=53% Similarity=0.853 Sum_probs=621.8
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
+.++|++...++ +...++++..|++++|++.++++.++.++.+|++++.|.+.+.||+.|+++++++|.|+||.|+.
T Consensus 20 ~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~ 96 (678)
T KOG1180|consen 20 TAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVY 96 (678)
T ss_pred CccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHH
Confidence 778888877555 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCE-EEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHH
Q 004568 138 DRACSFASGLVNFGHNVDTR-AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216 (744)
Q Consensus 138 ~~v~~lA~~L~~~Gv~~gd~-V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 216 (744)
.++.++|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.++.+++.+.+.|.|++++++.+||+.++++.+
T Consensus 97 ~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl 176 (678)
T KOG1180|consen 97 ERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKL 176 (678)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHH
Confidence 99999999999999998777 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeeEEEEecCCCCCcC-CCccC-CCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhh
Q 004568 217 SAVSSSLKTIKNVIYFENDGSEKD-SGVSG-GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294 (744)
Q Consensus 217 ~~~~~~~~~~~~ii~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~ 294 (744)
...+..++.++++|+++..+.+.. +.+.. ...++.+.+++++++.+.....++.++.|+|+|+|||||||||.||||+
T Consensus 177 ~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVm 256 (678)
T KOG1180|consen 177 KAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVM 256 (678)
T ss_pred HHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence 999999999999999996543321 11111 2346889999999999998876677779999999999999999999999
Q ss_pred hchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecce
Q 004568 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374 (744)
Q Consensus 295 ~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T 374 (744)
++|.|+++.+.+.....+.+++.|+++.++||.|++.+...+.+++.|+++.+.+|.++.+.++.+.+++.+++..++||
T Consensus 257 l~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPT 336 (678)
T KOG1180|consen 257 LTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPT 336 (678)
T ss_pred EecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccch
Confidence 99999999999988877789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEec
Q 004568 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454 (744)
Q Consensus 375 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG 454 (744)
+|.+||++|+++.+.+.+++++.+.+.+.||+.+|.++++.++ .++..++++|.++|+++|..+|++||++++||
T Consensus 337 iM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGG 411 (678)
T KOG1180|consen 337 IMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYILSGG 411 (678)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEEeCC
Confidence 9999999999999999999999999999999999999999886 36778899999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcc
Q 004568 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534 (744)
Q Consensus 455 ~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g 534 (744)
+||+++.++++..++++++.++||.||+|+..++..+.+...+.+|.|+++++++++|+++++|.+...| +.||||++|
T Consensus 412 apLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~i~G 490 (678)
T KOG1180|consen 412 APLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEILIGG 490 (678)
T ss_pred CCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877 999999999
Q ss_pred ccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEE
Q 004568 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614 (744)
Q Consensus 535 ~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V 614 (744)
+++..|||+||+.|++.|+. +||.+||+|||+|++.+||+|.|++|+||++|+.+||+|+++.||.+++..|.|.+.||
T Consensus 491 ~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICv 569 (678)
T KOG1180|consen 491 PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICV 569 (678)
T ss_pred CccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEE
Confidence 99999999999999999985 48667999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHh
Q 004568 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKA 694 (744)
Q Consensus 615 ~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (744)
++++...+++|+|||+...+..|+++.|+...+++++|++.++++.+.++|.+ ++++
T Consensus 570 yAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~-----------------------~ak~ 626 (678)
T KOG1180|consen 570 YADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIE-----------------------AAKS 626 (678)
T ss_pred ecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHH-----------------------HHHh
Confidence 99999999999999999999999999999998999999999999999999999 9988
Q ss_pred cCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 695 AKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 695 ~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
++|.++++|..|++.+++||||+|++|+..|++|+.++..|+++||++|+
T Consensus 627 ~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~ 676 (678)
T KOG1180|consen 627 QKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYK 676 (678)
T ss_pred cccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999995
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-99 Score=810.25 Aligned_cols=623 Identities=37% Similarity=0.637 Sum_probs=554.0
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
++.|+.....+. .....+.++..|+++.|.+.+..+|+.+++.++... ++. ++|+|+||.|+.
T Consensus 53 ~~~~~s~~~~~~--~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~~-------~~~~~~tY~q~~ 115 (691)
T KOG1256|consen 53 DGSRRSAVLPRE--ELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DGK-------GPYEWLTYKQVY 115 (691)
T ss_pred CCceeeeeccCC--CCCCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cCC-------CCcEEEEHHHHH
Confidence 455666555422 122334467899999999999999999999998532 343 788999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEEC-chhhhHH
Q 004568 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD-SKQLKKL 216 (744)
Q Consensus 138 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~ 216 (744)
+++..++..|+.+|+++++.|+|++-|++||+++.+||...|.++|||+.+++++++.++++++++.++|++ ++....+
T Consensus 116 e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~l 195 (691)
T KOG1256|consen 116 ERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKL 195 (691)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5556666
Q ss_pred HHhhc--cCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCC-CCCCCCCeEEEEecCCCCCcchhh
Q 004568 217 SAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP-SLPSQNGVAVIMYTSGSTGLPKGV 293 (744)
Q Consensus 217 ~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dd~a~i~~TSGTTG~PKgV 293 (744)
.+... .++.++.+|.++......... ....++.+++|+++...+......+ .++.|+|.|.|+|||||||.||||
T Consensus 196 l~~~~~~~~~~LK~iI~~~~~~~~~~~~--~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGV 273 (691)
T KOG1256|consen 196 LEIKENDSLPSLKAIIQLDEPSDELKEK--AENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGV 273 (691)
T ss_pred HhhcccccCccceeEEEecCCchhhhhh--hhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceE
Confidence 66555 478899999998775433211 1223678999999999997666655 588999999999999999999999
Q ss_pred hhchHHHHHHHHHH---HhhCC--CCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccc
Q 004568 294 MITHGNIVATAAAI---KTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKG 366 (744)
Q Consensus 294 ~~sh~~l~~~~~~~---~~~~~--~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~ 366 (744)
|+||+|+++.+... ....+ ....+|+++++|||+|++........+..|+++.+ +|+..+.+.
T Consensus 274 MLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d---------- 343 (691)
T KOG1256|consen 274 MLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD---------- 343 (691)
T ss_pred EEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH----------
Confidence 99999999976542 22221 23347999999999999999988888899999999 777777777
Q ss_pred cceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH-hhhhcccccccchhhhhHHHHHHHHHHHHhcC
Q 004568 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG 445 (744)
Q Consensus 367 ~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (744)
+++.+||.+.+||.+|+++.+.+++.....+.+++++|++|+++++ ..+..+.... ..+++|+++|+++++.+|+
T Consensus 344 -lk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~---~~~~~D~lVf~KI~~~LGg 419 (691)
T KOG1256|consen 344 -LKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS---RDRFADKLVFHKIKQSLGG 419 (691)
T ss_pred -HHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc---cchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999 4454332211 5789999999999999999
Q ss_pred cEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCC
Q 004568 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525 (744)
Q Consensus 446 ~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g 525 (744)
++|.+++|++|+++++..+++..+|++|+++||+|||++.++...+.+...+++|.|+|+++++++|+++.++.. .+
T Consensus 420 ~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a---~~ 496 (691)
T KOG1256|consen 420 NVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDA---DG 496 (691)
T ss_pred ceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCc---CC
Confidence 999999999999999999999999999999999999997777777777788999999999999999999888854 66
Q ss_pred CCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhc
Q 004568 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (744)
Q Consensus 526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~ 605 (744)
..|||||||++||.|||+||+.|+++|+ +| ||+||||+|+||++|.|.|+||+|++||+++||+|.|+.||+++.+
T Consensus 497 ~~GEIcirG~~Vf~GYyK~p~~T~e~id--eD--GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~ 572 (691)
T KOG1256|consen 497 SKGEICVRGPNVFMGYYKDPEKTAEAID--ED--GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKR 572 (691)
T ss_pred CcceEEEecchhceeccCChHHHhhhhc--cc--cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhc
Confidence 6899999999999999999999999998 77 9999999999999999999999999999999999999999999999
Q ss_pred CcCcceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchh
Q 004568 606 SDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKT 685 (744)
Q Consensus 606 ~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 685 (744)
.+.|.+.+|+|.+.+.+++|+|+|+.+.+..|+.+.++. .+++++|++..+++.+..+|.+
T Consensus 573 ~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~-~~~eelc~n~~~k~~vl~el~~------------------ 633 (691)
T KOG1256|consen 573 SLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVK-GTFEELCRNLDVKEAVLSELVK------------------ 633 (691)
T ss_pred CCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCc-hhHHHHhcChhhHHHHHHHHHH------------------
Confidence 999999999999988999999999999999999988888 5699999999999999999999
Q ss_pred hhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 686 TLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 686 ~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
+.++..|..++..+.|.+.+.+|+.++|++||+.|++|..+.++|+++||+||+
T Consensus 634 -----~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~ 687 (691)
T KOG1256|consen 634 -----VGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYK 687 (691)
T ss_pred -----HHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999999999999999995
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-98 Score=864.65 Aligned_cols=649 Identities=76% Similarity=1.265 Sum_probs=567.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCC
Q 004568 72 ELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151 (744)
Q Consensus 72 ~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~G 151 (744)
.....++++..|+.++|+++++++||++|+.++.+...+.+...+|+.|++...++|+++||+||.++++++|++|.++|
T Consensus 48 ~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG 127 (696)
T PLN02387 48 ELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALG 127 (696)
T ss_pred cccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence 35556778889999999999999999999987644332333333566666677789999999999999999999999999
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEE
Q 004568 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIY 231 (744)
Q Consensus 152 v~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~ 231 (744)
+++||+|+|+++|++||++++|||+++|+++||+++.++++++.++|++++++++|++.+..+.+......++.+++++.
T Consensus 128 ~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~ 207 (696)
T PLN02387 128 HNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIY 207 (696)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998888888777777788889998
Q ss_pred ecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (744)
+++......... ....++...+|+++...+...+.....+.++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~ 286 (696)
T PLN02387 208 MDDEGVDSDSSL-SGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV 286 (696)
T ss_pred ECCCCchhhhhh-hccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhc
Confidence 875432110000 0112355678888877654433333455789999999999999999999999999999888776654
Q ss_pred CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
+.+.++|++++++|++|++++...+.++..|+++.++++..+.+....+...+++++++++||+++++|++++.+.+...
T Consensus 287 ~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~ 366 (696)
T PLN02387 287 PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR 366 (696)
T ss_pred CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence 36889999999999999999988777888999998877776665443344556677999999999999999999999888
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
......+.+++.+|++++.+++..+...+++..+...+++|.++++++++.+|+++|.+++||+++++++.++++.++|+
T Consensus 367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~ 446 (696)
T PLN02387 367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGA 446 (696)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 88888888999999999999988877666666677888999999999999999999999999999999999999988899
Q ss_pred ceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccc
Q 004568 472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 472 ~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (744)
+++++||+||+++.++.....+...+++|+|+|+++++|+|++++++....++++.|||+|+||++|.|||++|+.|+++
T Consensus 447 ~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~ 526 (696)
T PLN02387 447 PIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEV 526 (696)
T ss_pred CeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhh
Confidence 99999999999988777666666779999999999999999777776554566778999999999999999999999999
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCH
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSH 631 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~ 631 (744)
|..+.+|.|||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.|.+|+|+|++.+.+++|+|+|++
T Consensus 527 f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~ 606 (696)
T PLN02387 527 YKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQ 606 (696)
T ss_pred hccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCH
Confidence 95445545699999999999999999999999999987899999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecC
Q 004568 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE 711 (744)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~ 711 (744)
+.+..|+++.+....++.++|+++++.+.+.+.+.+ .+++.+|+.|++|++|.++++
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~l~~~e~~~~i~l~~~ 663 (696)
T PLN02387 607 QALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSK-----------------------AAKAARLEKFEIPAKIKLLPE 663 (696)
T ss_pred HHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHH-----------------------HHHHcCCCCcceeeEEEEECC
Confidence 999999999998888899999999999999999999 877789999999999999999
Q ss_pred CCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 712 PWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 712 ~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
+|+|++|++|+++|++|+.+.+.|+++|++||+
T Consensus 664 ~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 696 (696)
T PLN02387 664 PWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696 (696)
T ss_pred CCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999996
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-91 Score=805.86 Aligned_cols=624 Identities=32% Similarity=0.581 Sum_probs=511.5
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
++.+|......+++ .+.+...|+.++|+++++++||++|+++++.. ++. .++++++||+||.
T Consensus 25 ~~~~~~~~~~~~~~----~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~Ty~el~ 86 (666)
T PLN02614 25 GPVYRSIFAKDGFP----NPIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVY 86 (666)
T ss_pred CCcccCcccccccC----CCCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeEHHHHH
Confidence 44555554433321 24566789999999999999999999864210 121 1345679999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHH
Q 004568 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS 217 (744)
Q Consensus 138 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 217 (744)
++++++|++|+++|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.++|++++++++|++.+....+.
T Consensus 87 ~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 166 (666)
T PLN02614 87 DIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF 166 (666)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655443
Q ss_pred Hhhcc-CCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhc
Q 004568 218 AVSSS-LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (744)
Q Consensus 218 ~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~s 296 (744)
..... .+.++.++.++........ .....+....+++++...+...........++|+++|+|||||||.||||++|
T Consensus 167 ~~~~~~~~~l~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt 244 (666)
T PLN02614 167 KTCPNSTEYMKTVVSFGGVSREQKE--EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244 (666)
T ss_pred HhcccccccceEEEEeCCCChHHhh--hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence 32221 2236677766532110000 00001234567888765433222122334689999999999999999999999
Q ss_pred hHHHHHHHHHHHhhC----CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccccceE
Q 004568 297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSV 370 (744)
Q Consensus 297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~ 370 (744)
|+|+++.+......+ ..+.++|++++++|++|++++...+.++..|+++++ +++..+++. +++
T Consensus 245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~ 313 (666)
T PLN02614 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED-----------LGE 313 (666)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence 999998877655433 146789999999999999998766667889999988 345555555 999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEE
Q 004568 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (744)
Q Consensus 371 ~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 450 (744)
++||+++++|++|+.+.+.+.......+.+++.+|+++++++...+... .......++++.++++++++.++++||.+
T Consensus 314 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lg~~lr~~ 391 (666)
T PLN02614 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKG--QSHVEASPLCDKLVFNKVKQGLGGNVRII 391 (666)
T ss_pred hCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcC--CCCcccchHHHHHHHHHHHHHhCCcEEEE
Confidence 9999999999999999988777777777788889999888776655421 11223456788899999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcE
Q 004568 451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529 (744)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GE 529 (744)
++||+++++++.++++...+++++++||+||+++.++...+.+ ...+++|+|+||++++|+|+++++..+ +++|+.||
T Consensus 392 ~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~~GE 470 (666)
T PLN02614 392 LSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTPRGE 470 (666)
T ss_pred EEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCCCce
Confidence 9999999998766655543689999999999987655544433 346899999999999999854443222 57889999
Q ss_pred EEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCc
Q 004568 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609 (744)
Q Consensus 530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V 609 (744)
|+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|+||+|.|||++|.+||+|
T Consensus 471 l~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V 545 (666)
T PLN02614 471 ICIRGKTLFSGYYKREDLTKEVL---ID--GWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV 545 (666)
T ss_pred EEEcCCcccccccCCHHHhhhhh---cc--CCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCe
Confidence 99999999999999999999999 56 89999999999999999999999999998789999999999999999999
Q ss_pred ceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhH
Q 004568 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL 689 (744)
Q Consensus 610 ~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 689 (744)
.+|+|+|.+++.+++|+|+|+.+.+..|+++.++.. +.+++|+++++++.+.+++.+
T Consensus 546 ~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~---------------------- 602 (666)
T PLN02614 546 DSVWVYGNSFESFLVAIANPNQQILERWAAENGVSG-DYNALCQNEKAKEFILGELVK---------------------- 602 (666)
T ss_pred eEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCc-CHHHHhcCHHHHHHHHHHHHH----------------------
Confidence 999999998778999999999999999999988874 688999999999999999998
Q ss_pred HHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 690 QVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 690 ~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.+++.+|+.|++|++|++++++|++++|++|+++|++|+.+.+.|+++|++||+
T Consensus 603 -~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~ 656 (666)
T PLN02614 603 -MAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYK 656 (666)
T ss_pred -HHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHH
Confidence 777679999999999999999999999999999999999999999999999995
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-89 Score=796.19 Aligned_cols=607 Identities=35% Similarity=0.624 Sum_probs=522.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004568 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (744)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~ 157 (744)
.+...|++++|+++++++||++|+.++... ++. .++++++||+||.++++++|++|+++|+++||+
T Consensus 40 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~------~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~ 105 (651)
T PLN02736 40 HPEIGTLHDNFVYAVETFRDYKYLGTRIRV--------DGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGAC 105 (651)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 456689999999999999999999754100 222 245678999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCC
Q 004568 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (744)
Q Consensus 158 V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (744)
|+|+++|++||+++++||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.......+.++.++.++....
T Consensus 106 Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~ 185 (651)
T PLN02736 106 VGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADE 185 (651)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCch
Confidence 99999999999999999999999999999999999999999999999999998887777776667777888877653211
Q ss_pred CcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCC
Q 004568 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (744)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (744)
.. .... ...+....+|+++.......+.......++|+++|+|||||||.||||++||+++++.+......+ ++.++
T Consensus 186 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~ 262 (651)
T PLN02736 186 PL-PSLP-SGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPS 262 (651)
T ss_pred hh-hhhh-ccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCC
Confidence 00 0000 001234677888876543332223445789999999999999999999999999999998888777 88899
Q ss_pred cEEEecCChHHHHHHHHHHHHHHhcceEEeC--CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHH
Q 004568 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (744)
Q Consensus 318 d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~--~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~ 395 (744)
|++++++|++|++++...+.++..|+++++. ++..+++. ++++++|+++++|++|+.+.+.......
T Consensus 263 d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~ 331 (651)
T PLN02736 263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIFCSVPRLYNRIYDGITNAVK 331 (651)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEecchHHHHHHHHHHHHHHh
Confidence 9999999999999998778889999999883 34444454 9999999999999999999998888888
Q ss_pred hhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceec
Q 004568 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (744)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~ 475 (744)
..+.+++++|++++..+...+... ....+.++.+++++++..+++++|.+++||+++++++.++++..+|+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~ 406 (651)
T PLN02736 332 ESGGLKERLFNAAYNAKKQALENG-----KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLE 406 (651)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEE
Confidence 888899999999887765544311 112346788889999998889999999999999999999999888999999
Q ss_pred ccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccC
Q 004568 476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (744)
+||+||+++.++.........+++|+|+||++++|+|.+++.+...+.+++.|||+|+||+++.|||++|+.|++.|.
T Consensus 407 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~-- 484 (651)
T PLN02736 407 GYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID-- 484 (651)
T ss_pred EechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc--
Confidence 999999988777666656667899999999999999955544333345667899999999999999999999999996
Q ss_pred CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCHHHHH
Q 004568 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALE 635 (744)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~ 635 (744)
.| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||+|.+|+|+|......++|+|+++++.+.
T Consensus 485 ~d--gw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~ 562 (651)
T PLN02736 485 ED--GWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLK 562 (651)
T ss_pred cC--CCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHH
Confidence 56 8999999999999999999999999999878999999999999999999999999997656789999999999999
Q ss_pred HHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCC
Q 004568 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTP 715 (744)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p 715 (744)
.|++..+.+..++.+.|+++++++.+.+.|.+ .+++.+|+.|++|++|++++++|++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~~~~ 619 (651)
T PLN02736 563 AWAASEGIKYEDLKQLCNDPRVRAAVLADMDA-----------------------VGREAQLRGFEFAKAVTLVPEPFTV 619 (651)
T ss_pred HHHHHcCCCccCHHHHhcCHHHHHHHHHHHHH-----------------------HHHhcCCCcceeeeEEEEeCCCCcC
Confidence 99998888877899999999999999999999 8887789999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 716 EAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 716 ~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
++|++|++||++|++|++.|+++|++||.
T Consensus 620 ~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~ 648 (651)
T PLN02736 620 ENGLLTPTFKVKRPQAKAYFAKAISDMYA 648 (651)
T ss_pred CCCcCChhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999995
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-90 Score=792.16 Aligned_cols=613 Identities=21% Similarity=0.339 Sum_probs=510.7
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
+..||.....++ .+|....|+.++|.++++++|+++|+++.+ +| ..++++||+||.
T Consensus 43 ~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g--------~~~~~~Ty~el~ 98 (746)
T PTZ00342 43 SSVYCMKDHKKK------SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CG--------EPQNYITYGNFF 98 (746)
T ss_pred CCceecCchhhc------ccccccchHHHHHHHHHhhcCCceeEeccC----------CC--------CCceeeeHHHHH
Confidence 557774443333 566778999999999999999999997521 12 135689999999
Q ss_pred HHHHHHHHHHHh---CCCCCC-----------CEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCc
Q 004568 138 DRACSFASGLVN---FGHNVD-----------TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQV 203 (744)
Q Consensus 138 ~~v~~lA~~L~~---~Gv~~g-----------d~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~ 203 (744)
++++++|++|.+ +|+++| |+|+|+++|++||+++++||+++|++.||++++++++++.++|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 999999999997 499999 999999999999999999999999999999999999999999999999
Q ss_pred eEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc-----------------CCC------------------------
Q 004568 204 TTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-----------------DSG------------------------ 242 (744)
Q Consensus 204 ~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-----------------~~~------------------------ 242 (744)
++||++.+..+.+......++.++.+++++...... ...
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888888877777788889999887532110 000
Q ss_pred ------------cc--CCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH
Q 004568 243 ------------VS--GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (744)
Q Consensus 243 ------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (744)
+. ....+.....|+++..... .........++|+|+|+|||||||.||||++||+|+++.+....
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~ 337 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC 337 (746)
T ss_pred ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence 00 0001123344555543321 11122345789999999999999999999999999999887665
Q ss_pred hhC-CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccccceEecceEEeechHHHHH
Q 004568 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (744)
Q Consensus 309 ~~~-~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~ 385 (744)
... ......|++++++|++|++++...+.+++.|+++++ .++..+++. |++++||+++++|.+|+.
T Consensus 338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~~ 406 (746)
T PTZ00342 338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFNR 406 (746)
T ss_pred hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHHH
Confidence 432 012356899999999999999877888999999988 456666666 999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHH--HHHHHHHHhcCcEEEEEEecCCCCHHHHH
Q 004568 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI--VFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (744)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~gG~~l~~~~~~ 463 (744)
+++.+...+...+.+++.+|.++++.+..... +...++++.+ +++++++.+|++||.+++||+++++++.+
T Consensus 407 i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~ 479 (746)
T PTZ00342 407 IYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAE 479 (746)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHH
Confidence 99998888888888999999999988876543 2223456554 79999999999999999999999999999
Q ss_pred HHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCc-CccEEEEEecCCCCccCCCCCCCCcEEEEcccccccccc
Q 004568 464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (744)
Q Consensus 464 ~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (744)
+++..+|++++++||+||+++.++.....+...+++|+|+ |+++++|+|++++.. .+.++.|||+++||++|.|||
T Consensus 480 ~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~---~~~~~~GEl~vrGp~v~~GY~ 556 (746)
T PTZ00342 480 ELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKA---TDTLPKGELLIKSDSIFSGYF 556 (746)
T ss_pred HHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEeccccccc---CCCCCceEEEEecCccccccc
Confidence 9998899999999999999887777666666789999998 999999998654332 234467999999999999999
Q ss_pred CCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCe
Q 004568 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNY 622 (744)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~ 622 (744)
++|++|+++|. .| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|++...+
T Consensus 557 ~~pe~T~~~f~--~d--GW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~ 632 (746)
T PTZ00342 557 LEKEQTKNAFT--ED--GYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDG 632 (746)
T ss_pred CChhhhhhhcC--cC--CcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccc
Confidence 99999999996 56 899999999999999999999999999988899999999999999999999999999876678
Q ss_pred EEEEEEcCHHHHHHHHHHh------CCCCCCHHH-----HhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHH
Q 004568 623 CVALVVPSHKALEKWAHEA------SIKYEDLSE-----LCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQV 691 (744)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (744)
++|+|+|+++.+.+|+++. |++..+..+ .++++++.+.+.+++.+ .
T Consensus 633 ~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~ 689 (746)
T PTZ00342 633 PLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLE-----------------------V 689 (746)
T ss_pred cEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHH-----------------------H
Confidence 9999999999999999875 444444544 55677889999999999 7
Q ss_pred HHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHH---HHHHhhhC
Q 004568 692 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK---DDLQMLYQ 744 (744)
Q Consensus 692 ~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~---~~i~~~Y~ 744 (744)
.++.+|++|+++++|.+++++|+| +|++|++.|++|+.+.+.|+ +.|+++|+
T Consensus 690 ~~~~~l~~~e~i~~~~l~~~~~t~-~~~lTpt~KlkR~~v~~~y~~~i~~i~~~y~ 744 (746)
T PTZ00342 690 YKKTNLNRYNIINDIYLTSKVWDT-NNYLTPTFKVKRFYVFKDYAFFIDQVKKIYK 744 (746)
T ss_pred HHHhCCccceeeeeEEEecCCCCC-CCccChhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 676799999999999999999999 57999999999999999999 66667884
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-89 Score=787.85 Aligned_cols=622 Identities=31% Similarity=0.567 Sum_probs=513.8
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
+..+|+....+.+.. ..++..|++++|+++++++|+++|++++... ++. .++++++||+||.
T Consensus 23 ~~~~~~~~~~~~~~~----~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~~------~g~~~~~Ty~el~ 84 (660)
T PLN02861 23 GPVYRSIYAKDGLLD----LPADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DSK------VGPYVWLTYKEVY 84 (660)
T ss_pred CCccccccccccccc----CCCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCceEEEHHHHH
Confidence 556666554444221 2256689999999999999999999864211 221 2456789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHH
Q 004568 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS 217 (744)
Q Consensus 138 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 217 (744)
++++++|++|.++|+++||+|+|+++|++||++++|||+++|+++|||++.++.+++.++|++++++++|++....+.+.
T Consensus 85 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~ 164 (660)
T PLN02861 85 DAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSIL 164 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766665
Q ss_pred HhhccCC-CeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhc
Q 004568 218 AVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (744)
Q Consensus 218 ~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~s 296 (744)
......+ .++.++.++........ .....+....+|+++...+... .......++|+++|+|||||||.||||++|
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lt 241 (660)
T PLN02861 165 SCLPKCSSNLKTIVSFGDVSSEQKE--EAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILT 241 (660)
T ss_pred HhhhhCCCCCEEEEEECCCChhhhh--hhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEe
Confidence 5444443 56777777543211000 0000123456788776543221 112345689999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCC----CCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccccceE
Q 004568 297 HGNIVATAAAIKTLIP----NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSV 370 (744)
Q Consensus 297 h~~l~~~~~~~~~~~~----~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~ 370 (744)
|+++++.+......+. .+.++|++++++|++|++++...+.+++.|+++++ +++..+++. |++
T Consensus 242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~ 310 (660)
T PLN02861 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMED-----------VQA 310 (660)
T ss_pred cHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHH
Confidence 9999998877655441 14688999999999999998776678999999988 445555555 999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEE
Q 004568 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (744)
Q Consensus 371 ~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 450 (744)
++||+++++|++|+.+++.+.......+.+++.+|.++.+.++..++.... .....+.++.++++++++.+|+++|.+
T Consensus 311 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~lg~~lr~~ 388 (660)
T PLN02861 311 LKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK--QEEASPRLDRLVFDKIKEGLGGRVRLL 388 (660)
T ss_pred hCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CcCccHhHHHHHHHHHHHHhCCcEEEE
Confidence 999999999999999999888888888899999999999998887653211 112345778889999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhcC-CceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCc
Q 004568 451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528 (744)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~G 528 (744)
++||+++++++.++++ .++ ..++++||+||+++.++...... ...+++|+|+|+++++|+|.++.++.. .++++.|
T Consensus 389 ~~Ggapl~~~~~~~~~-~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~~G 466 (660)
T PLN02861 389 LSGAAPLPRHVEEFLR-VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVPRG 466 (660)
T ss_pred EECCCCCCHHHHHHHH-HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCCce
Confidence 9999999999876555 455 47999999999987665443332 246899999999999999854433211 3456789
Q ss_pred EEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcC
Q 004568 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608 (744)
Q Consensus 529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~ 608 (744)
||+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.|||++|.+||.
T Consensus 467 Ei~vrGp~v~~GY~~~pe~T~~~f---~d--Gw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~ 541 (660)
T PLN02861 467 EICLRGNTLFSGYHKRQDLTEEVL---ID--GWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL 541 (660)
T ss_pred eEEEcCCcccccccCCHHHHHhhh---hc--cCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCC
Confidence 999999999999999999999999 56 8999999999999999999999999999878999999999999999999
Q ss_pred cceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhh
Q 004568 609 VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLC 688 (744)
Q Consensus 609 V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 688 (744)
|.+|+|+|.++.++++|+|+++.+.+..|+.+.+.. .+..++|++++....+.+++.+
T Consensus 542 V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------- 599 (660)
T PLN02861 542 IASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKT-GDFKSLCKNLKARKYILDELNS--------------------- 599 (660)
T ss_pred eeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHH---------------------
Confidence 999999999877789999999999999999987754 3578899999999999999999
Q ss_pred HHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 689 LQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 689 ~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.+++..|+.|++++++.+.+++|++++|++|+++|++|+.+.+.|+++|++||+
T Consensus 600 --~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~ 653 (660)
T PLN02861 600 --TGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYS 653 (660)
T ss_pred --HHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777668999999999999999999999999999999999999999999999995
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-87 Score=775.29 Aligned_cols=624 Identities=32% Similarity=0.573 Sum_probs=520.6
Q ss_pred CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHH
Q 004568 58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137 (744)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~ 137 (744)
++.+|+....+.++ ...+...|++++|.+.++++|+++|+.++... ++. .++++++||+|+.
T Consensus 22 ~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el~ 83 (660)
T PLN02430 22 GPVYRNLLSKKGFP----PIDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVY 83 (660)
T ss_pred CCcccccccccccc----CCCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHHH
Confidence 56666654433321 12357789999999999999999999875311 222 2456789999999
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-hHH
Q 004568 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKL 216 (744)
Q Consensus 138 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~ 216 (744)
++++++|++|.+.|+++||+|+|+++|++||++++|||+++|+++||+++.++++++.+++++++++++|++.... ..+
T Consensus 84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987643 333
Q ss_pred HHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhc
Q 004568 217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (744)
Q Consensus 217 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~s 296 (744)
.......+.++.++.++........ .....+....+|+++...+...+.......++|+++|+|||||||.||||++|
T Consensus 164 ~~~~~~~~~l~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lt 241 (660)
T PLN02430 164 EPDCKSAKRLKAIVSFTSVTEEESD--KASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241 (660)
T ss_pred hhhcccCCCceEEEEECCCChHHhh--hhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEee
Confidence 3333345567788887643211100 00011334678888876554333333445689999999999999999999999
Q ss_pred hHHHHHHHHHHHhhC----CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccccceE
Q 004568 297 HGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSV 370 (744)
Q Consensus 297 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~ 370 (744)
|+|+++.+....... ..++++|++++++|++|.++....+.++..|+++++ .++..+.+. +.+
T Consensus 242 h~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~ 310 (660)
T PLN02430 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LME 310 (660)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHH
Confidence 999998877654321 146789999999999999998877777889999987 334444444 999
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEE
Q 004568 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (744)
Q Consensus 371 ~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 450 (744)
++||++.++|.+|+.+.+.+.......+.+++.+|+++++.+...++.... .....+++|.+++++++..+|+++|.+
T Consensus 311 ~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~ 388 (660)
T PLN02430 311 LKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLL 388 (660)
T ss_pred hCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999999888888888889999999999999887753221 123456789999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcE
Q 004568 451 ICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529 (744)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GE 529 (744)
++||+++++++.++++...+++++++||+||+++.++...+.+ ...+++|+|+++++++++|.++.++.+ .+.++.||
T Consensus 389 ~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GE 467 (660)
T PLN02430 389 ISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGE 467 (660)
T ss_pred EECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcce
Confidence 9999999999988887665578999999999988776655443 346899999999999999855544332 44557899
Q ss_pred EEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCc
Q 004568 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609 (744)
Q Consensus 530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V 609 (744)
|+|+||+++.|||++|+.|+++| .| |||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||.|
T Consensus 468 i~vrg~~v~~GY~~~~e~t~~~~---~d--Gw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V 542 (660)
T PLN02430 468 ICVRGKCLFSGYYKNPELTEEVM---KD--GWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIV 542 (660)
T ss_pred EEecCCCccccccCChHHhhhhh---hc--cceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCe
Confidence 99999999999999999999998 66 89999999999999999999999999998889999999999999999999
Q ss_pred ceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhH
Q 004568 610 DNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL 689 (744)
Q Consensus 610 ~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 689 (744)
.+|+|+|.....+++|+|+++++.+..|++..+... +.+++|+++++++.+.++|.+
T Consensus 543 ~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~---------------------- 599 (660)
T PLN02430 543 EDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTG-SFEELCSLPELKEHILSELKS---------------------- 599 (660)
T ss_pred eEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCC-CHHHHhcCHHHHHHHHHHHHH----------------------
Confidence 999999977667899999999999999999888764 588999999999999999999
Q ss_pred HHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 690 QVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 690 ~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.+++.+|+.|+++++|++++++|++++|++|+++|++|+.+.+.|+++|++||+
T Consensus 600 -~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 653 (660)
T PLN02430 600 -TAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYR 653 (660)
T ss_pred -HHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHH
Confidence 777678999999999999999999999999999999999999999999999995
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-88 Score=741.92 Aligned_cols=586 Identities=32% Similarity=0.535 Sum_probs=495.3
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...++..++.++++.+|+.+|+.... .+.++.+||+|+.+++.++|++|++.|+..||+|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrva 74 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDRVA 74 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 45789999999999999988887642 35678999999999999999999999997799999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-hHHHHhhccCCCeeEEEEecC---C
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKLSAVSSSLKTIKNVIYFEN---D 235 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~ii~~~~---~ 235 (744)
|++.|+++|+++.+||+.+|++.||++++.+++++.++|++++++++|++.... +.+..+...++.+..++.... .
T Consensus 75 i~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (613)
T COG1022 75 IFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVRE 154 (613)
T ss_pred EEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999998554 444444443332221111111 0
Q ss_pred CCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC-C
Q 004568 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN-P 314 (744)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~ 314 (744)
..+................+ .+. .........+..+||+|.|+|||||||.|||||+||+|+++++....... . +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-~~~ 230 (613)
T COG1022 155 AVEAKALVLEVFPDEGISLF-LID--SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-PPI 230 (613)
T ss_pred ccchhhccccccccccchhh-hhc--ccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-CCC
Confidence 00000000000000011111 111 11111112567899999999999999999999999999999999999988 5 8
Q ss_pred CCCcEEEecCChHHHHHHHH-HHHHHHhcceEEe-CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~-~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~ 392 (744)
+++|+++++||++|++.+.. ....+..|+++.+ .++..+.+. +.+++||++++||.+|+.+.+.+.+
T Consensus 231 ~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I~~ 299 (613)
T COG1022 231 GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGIME 299 (613)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHHHH
Confidence 89999999999999999987 4455667776666 777777777 9999999999999999999999999
Q ss_pred HHHhhcchhhhHHHHHHHHHHhhhhccccc-ccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFG-AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
++...+..++.+|+++++.+.........+ .........|+++|+++++.+|+++|++++||+++++++..+++.. |+
T Consensus 300 kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi 378 (613)
T COG1022 300 KVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GI 378 (613)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CC
Confidence 999999999999999998765433211111 1122223489999999999999999999999999999999999985 89
Q ss_pred ceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccc
Q 004568 472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 472 ~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (744)
++.++||+|||+++++++++.....+++|.|+|+++++|+| .|||+||||+||.|||++|++|+++
T Consensus 379 ~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taea 444 (613)
T COG1022 379 PILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEA 444 (613)
T ss_pred CeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhh
Confidence 99999999999999999999999999999999999999987 4999999999999999999999999
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCH
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSH 631 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~ 631 (744)
|+ +| |||+|||+|.+|++|+|+|+||+||+||+++|++|.|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.
T Consensus 445 f~--~D--GWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~ 519 (613)
T COG1022 445 FT--ED--GWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDF 519 (613)
T ss_pred cc--cc--CCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCH
Confidence 98 67 999999999999999999999999999999999999999999999999999999999 66889999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec
Q 004568 632 KALEKWAHEAS-IKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710 (744)
Q Consensus 632 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~ 710 (744)
+.+.+|++..+ ....+.++++.++++.+.+.+.+.+ -.+ ++..++.+..+.+.+
T Consensus 520 ~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~-----------------------~~~--~~~~~E~i~~~~~~~ 574 (613)
T COG1022 520 DALEKWAESLNKVISASREELARDPKLLKLILPRVNK-----------------------GNK--RLFGFEQIKKFVLLP 574 (613)
T ss_pred HHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHH-----------------------Hhh--cccchhhhheeeecc
Confidence 99999999766 4446789999999999999999998 333 668899999999999
Q ss_pred CCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 711 EPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 711 ~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
..|+++++.+|++-|++|..+.+.|.+.|+.+|.
T Consensus 575 ~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~ 608 (613)
T COG1022 575 KEFTPENGELTPTLKLKRHVILDRYKDEIEAVYS 608 (613)
T ss_pred cccccccCccccchhhhHHHHHHhhhhHHHHHhh
Confidence 9999999999999999999999999999999984
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-87 Score=775.48 Aligned_cols=620 Identities=33% Similarity=0.578 Sum_probs=514.5
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccC--CCc--ceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCC
Q 004568 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTAS--DGR--KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH 152 (744)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~--dg~--~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv 152 (744)
.|+...|+.++|+++++++||++|+++++....+.+... +|+ .|.....++++++||+||.++++++|++|.++|+
T Consensus 64 ~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv 143 (700)
T PTZ00216 64 EWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGL 143 (700)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCC
Confidence 455668999999999999999999998642111111110 121 1222223467899999999999999999999999
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhcc--CCCeeEEE
Q 004568 153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS--LKTIKNVI 230 (744)
Q Consensus 153 ~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~ii 230 (744)
++||+|+|+++|++||++++|||+++|++++|+++.++++++.+++++++++++|++......+...... .+.. .++
T Consensus 144 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii 222 (700)
T PTZ00216 144 TKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TII 222 (700)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEE
Confidence 9999999999999999999999999999999999999999999999999999999998766555443322 2333 455
Q ss_pred EecCCCCCcCCCccCCCCCceEeeHHHHHHcCC--CCCC-CCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH
Q 004568 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (744)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (744)
.++...... ...+....+|+++...+. .... ......++|+++|+|||||||.||||++||+|+++.+.+.
T Consensus 223 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~ 296 (700)
T PTZ00216 223 YLDSLPASV------DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILAL 296 (700)
T ss_pred EECCCcccc------ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHH
Confidence 554321110 012356778998876652 1111 1234568999999999999999999999999999988776
Q ss_pred HhhC----CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHH
Q 004568 308 KTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF 383 (744)
Q Consensus 308 ~~~~----~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~ 383 (744)
...+ ..+.++|++++++|++|++++.....++..|+++++.++..+.+. ......++++++||++.++|.+|
T Consensus 297 ~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~----~~~~~~~l~~~~pT~~~~vP~~~ 372 (700)
T PTZ00216 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDT----FARPHGDLTEFRPVFLIGVPRIF 372 (700)
T ss_pred HhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhh----hccccchHHHcCCcEEEechHHH
Confidence 5443 124678999999999999998766666888988888766665543 11122348899999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHH
Q 004568 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (744)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~ 463 (744)
+.+.+.........+.+++++|.+++..++..+. .+...++++.++|++++..+|+++|.+++||+++++++.+
T Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~ 446 (700)
T PTZ00216 373 DTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK------EGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQE 446 (700)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH------cCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH
Confidence 9999988888888888999999999988877654 2334567899999999999999999999999999999999
Q ss_pred HHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 464 ~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
+++..++ +++++||+||+++.++.....+...+++|+|++|++++|+|.++.. ..+++++.|||+|+||+++.|||+
T Consensus 447 ~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~--~~~~~~~~GEL~vrG~~v~~GY~~ 523 (700)
T PTZ00216 447 FVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK--HTDTPEPRGEILLRGPFLFKGYYK 523 (700)
T ss_pred HHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhc--cCCCCCCCceEEEcCCcccchhcC
Confidence 9988888 9999999999988777666655667899999999999999944321 124567789999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcce--EEEEecCCCC
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHADPFHN 621 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~--a~V~g~~~~~ 621 (744)
+|+.|+++|. .| |||+|||+|++|+||+|+|+||+||+||..+|++|+|+|||++|.+||.|.+ ++|++.+++.
T Consensus 524 ~pe~T~~~f~--~d--Gw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~ 599 (700)
T PTZ00216 524 QEELTREVLD--ED--GWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARS 599 (700)
T ss_pred ChhHhhhhcc--cc--CCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCc
Confidence 9999999997 56 8999999999999999999999999999657999999999999999999997 5677777788
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
+++|+|+++.+.+..|+++.++. .+.+++|+++++.+.+.+++.+ .+++.+|..|+
T Consensus 600 ~l~a~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~l~~~e 655 (700)
T PTZ00216 600 YICALVLTDEAKAMAFAKEHGIE-GEYPAILKDPEFQKKATESLQE-----------------------TARAAGRKSFE 655 (700)
T ss_pred eEEEEEecCHHHHHHHHHHcCCC-CCHHHHhcCHHHHHHHHHHHHH-----------------------HHHhcCCCCce
Confidence 99999999999999999988876 4588999999999999999999 77778999999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.|++|++++++|++++|++|+++|++|+++.+.|++.|++||+
T Consensus 656 ~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 698 (700)
T PTZ00216 656 IVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFA 698 (700)
T ss_pred eEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999995
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-80 Score=620.19 Aligned_cols=508 Identities=24% Similarity=0.327 Sum_probs=435.2
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|+.++++-.+++-||+.|+++.. .|. ++||+|+.+.++++|++|.++|+++||||+
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~kGDrVg 106 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLKKGDRVG 106 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCCCCCEEE
Confidence 34899999999999999999999853 343 599999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhh-------------c
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVS-------------S 221 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~-------------~ 221 (744)
+..||+.+|+..+|||.++|.+.|++||.+..+++++.|++.+++++|+...+. +.+.++. .
T Consensus 107 vwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~ 186 (596)
T KOG1177|consen 107 VWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSE 186 (596)
T ss_pred EecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccc
Confidence 999999999999999999999999999999999999999999999999986542 2333322 2
Q ss_pred cCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCC-----CCCCCCCCeEEEEecCCCCCcchhhhhc
Q 004568 222 SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-----PSLPSQNGVAVIMYTSGSTGLPKGVMIT 296 (744)
Q Consensus 222 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~dd~a~i~~TSGTTG~PKgV~~s 296 (744)
.+|.++++|..+++.. -.+...++|++..+...... .....|||++.|.|||||||.|||+.+|
T Consensus 187 ~lp~lthvi~~~ed~~-----------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLs 255 (596)
T KOG1177|consen 187 LLPELTHVILADEDHP-----------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLS 255 (596)
T ss_pred ccccceEEEecCCCCc-----------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeee
Confidence 3567788888774432 23567788887765543221 2456789999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEe----CCcccccccchhhccCccccceEe
Q 004568 297 HGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVL 371 (744)
Q Consensus 297 h~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~----~~~~~~~~~~~~~~~~~~~~i~~~ 371 (744)
|.|++++.......+ ++.++++++...|++|.+|... .+.+|..|+|+++ ++|...++. |.++
T Consensus 256 H~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa-----------i~~e 323 (596)
T KOG1177|consen 256 HYNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA-----------ISNE 323 (596)
T ss_pred hhhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH-----------HHhh
Confidence 999999999999998 9999999999999999999655 5778999999999 455555554 9999
Q ss_pred cceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEE
Q 004568 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451 (744)
Q Consensus 372 ~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~ 451 (744)
++|.++++|+++..|++.... .+...+++|.++
T Consensus 324 kcT~l~gtPtM~~Dlln~~~~-----------------------------------------------~~~~~s~lr~~v 356 (596)
T KOG1177|consen 324 KCTTLYGTPTMFVDLLNIPQK-----------------------------------------------QQVDLSSLRKGV 356 (596)
T ss_pred ceEEEecChHHHHHHhcchhh-----------------------------------------------ccCchhhhhhhe
Confidence 999999999999998864221 222336899999
Q ss_pred EecCCCCHHHHHHHHhhcCCc-eecccChhhhcccccccCCCCC---CCCccCCCcCccEEEEEecCCCCccCCCCCCCC
Q 004568 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR 527 (744)
Q Consensus 452 ~gG~~l~~~~~~~~~~~~g~~-i~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~ 527 (744)
.||+++|+++.+.+.+..+.. +..+||+||++++.+....++. +..++|+.+++.+.+|+| .+|.. .+-|..
T Consensus 357 igGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~---v~~~~~ 432 (596)
T KOG1177|consen 357 IGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSE---VPLGTK 432 (596)
T ss_pred eCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCc---cccCCC
Confidence 999999999999988876654 7789999999998888777665 347999999999999999 66655 457788
Q ss_pred cEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCc
Q 004568 528 GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD 607 (744)
Q Consensus 528 GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p 607 (744)
|||++||+++|+|||++++.|++... .| +||+|||+|.+|++|+++|+||.+|+|+ +||+||+|.|||+.|.+||
T Consensus 433 Gel~iRGY~tMl~Ywg~~~kT~eti~--~d--rW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp 507 (596)
T KOG1177|consen 433 GELLIRGYSTMLGYWGEEEKTKETIG--ND--RWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHP 507 (596)
T ss_pred ceEEEEechhheeecCCcccchhhcc--cc--cceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCC
Confidence 99999999999999999999999986 66 9999999999999999999999999998 7999999999999999999
Q ss_pred CcceEEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccch
Q 004568 608 YVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYK 684 (744)
Q Consensus 608 ~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 684 (744)
.|.++.|+|++|.. .++|+|-+.++.. + ....++|++
T Consensus 508 ~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e-------~----------------~~t~E~lKa----------------- 547 (596)
T KOG1177|consen 508 LVKEAHVVGVPDERLGEEVCACVRLQEGAE-------G----------------KTTAETLKA----------------- 547 (596)
T ss_pred CeeeEEEEccCCCcccceEEEEEEeecccc-------c----------------cccHHHHHH-----------------
Confidence 99999999999875 4999998887541 1 122478888
Q ss_pred hhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 685 TTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 685 ~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+|+ ++|.+|++|++|++++++ | +|.+|||+|-+++++.+.++.
T Consensus 548 ------~Ck-~klaHFKiPky~vf~~~F--P----lT~tGKIqKFeir~~~k~~l~ 590 (596)
T KOG1177|consen 548 ------MCK-GKLAHFKIPKYFVFVDEF--P----LTTTGKIQKFEIREMSKGHLG 590 (596)
T ss_pred ------HHh-cccccccCCcEEEEeccC--c----ccccccchhHHHHHHHHhhcc
Confidence 999 889999999999999997 8 999999999999999986653
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-80 Score=668.85 Aligned_cols=476 Identities=28% Similarity=0.396 Sum_probs=403.7
Q ss_pred EEeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEE
Q 004568 130 WQTYGEVFDRACSFASGLVNFG--HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (744)
Q Consensus 130 ~~Ty~eL~~~v~~lA~~L~~~G--v~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (744)
.+||+|+.+++.++|.+|.++| +++||+|++++||+++++.+++||+.+|+++.|+||.+.+.++.+.+++++++++|
T Consensus 45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif 124 (537)
T KOG1176|consen 45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF 124 (537)
T ss_pred EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence 7999999999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred ECchhhhHHHHhhccCCCeeEEEEecCC-CCCcCCCccCCCCCceEee-HHHHHHcCCCCCCCCCCCCCCCeEEEEecCC
Q 004568 208 CDSKQLKKLSAVSSSLKTIKNVIYFEND-GSEKDSGVSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285 (744)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSG 285 (744)
++.+..+.+.++...+. ..++++... .... ........+ +..+...+.... ..+...||++.|+||||
T Consensus 125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSG 194 (537)
T KOG1176|consen 125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVIS------ISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSG 194 (537)
T ss_pred EcCchHHHHHHHHhhcC--CceEEEecccCccc------cccccccccchhhccccCCCcc--cccCCCCCeEEEecCCC
Confidence 99999998887776655 344444432 1110 000011111 333333222222 45667799999999999
Q ss_pred CCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHH-HHhcceEEe---CCcccccccchhhc
Q 004568 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGY---GSTLTMTDTSSKIK 361 (744)
Q Consensus 286 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~-l~~G~~~v~---~~~~~~~~~~~~~~ 361 (744)
|||.||||++||++++.+.......+ .+...|+.++.+|++|.+|+...+.+ +..|++++. +++..+++.
T Consensus 195 TTg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~----- 268 (537)
T KOG1176|consen 195 TTGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL----- 268 (537)
T ss_pred CCCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH-----
Confidence 99999999999999999987776666 77789999999999999999998875 445555555 577777777
Q ss_pred cCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHH
Q 004568 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441 (744)
Q Consensus 362 ~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (744)
+++|++|+++++|+++..|++... ...
T Consensus 269 ------i~kykvt~~~~vP~~~~~l~~~p~-----------------------------------------------~~~ 295 (537)
T KOG1176|consen 269 ------IEKYKVTHLFLVPPVLNMLAKSPI-----------------------------------------------VKK 295 (537)
T ss_pred ------HHHhCEEEEEcChHHHHHHhcCCc-----------------------------------------------cCc
Confidence 999999999999999999987420 011
Q ss_pred HhcCcEEEEEEecCCCCHHHHHHHHhhcC-CceecccChhhhcccccccCCCCC-CCCccCCCcCccEEEEEecCCCCcc
Q 004568 442 VLGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDEGGYK 519 (744)
Q Consensus 442 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~~~~~v~i~d~~~~~~~ 519 (744)
..++++|.+++||+++++++.+++++.++ ..+.++||+||+++.++.+...+. +++++|++++++++++.+ ++|..
T Consensus 296 ~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~- 373 (537)
T KOG1176|consen 296 YDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVS- 373 (537)
T ss_pred ccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCC-
Confidence 23469999999999999999999999998 889999999999988888777664 789999999998888887 77765
Q ss_pred CCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHH
Q 004568 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKV 599 (744)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eI 599 (744)
+++++.||||++|++++.|||+||++|++.|. .+ |||+|||+|++|+||+|+|+||.||+||. +|++|+|.||
T Consensus 374 --l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~--~~--GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~Ei 446 (537)
T KOG1176|consen 374 --LGPNQTGEICVRGPQVMKGYLKNPEATKEAFD--DD--GWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAEI 446 (537)
T ss_pred --CCCCCceEEEEECcccchhhcCChHHHHhhcc--cC--CccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHHH
Confidence 56899999999999999999999999999996 55 89999999999999999999999999996 7999999999
Q ss_pred HHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchh
Q 004568 600 EAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTE 676 (744)
Q Consensus 600 E~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 676 (744)
|++|.+||.|.||||+|.+|+. .++|+||++++. + +. .++|.+
T Consensus 447 E~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~----------~---lt------------e~di~~--------- 492 (537)
T KOG1176|consen 447 EAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS----------T---LT------------EKDIIE--------- 492 (537)
T ss_pred HHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC----------c---CC------------HHHHHH---------
Confidence 9999999999999999999885 499999998742 1 11 267777
Q ss_pred hhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 677 FFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
||+ .+|++|++|..++|++++ | +|++|||+|+.|++++.+.
T Consensus 493 --------------~v~-k~l~~y~~~~~V~Fvd~l--P----Ks~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 493 --------------YVR-KKLPAYKLPGGVVFVDEL--P----KTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred --------------HHH-hhCChhhccCeEEEeccC--C----CCCcchHHHHHHHHHHHhc
Confidence 888 799999999999999999 8 9999999999999999763
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-75 Score=659.73 Aligned_cols=504 Identities=30% Similarity=0.430 Sum_probs=416.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
....++.+++.++++++|+++|+.+. +. . .++||+||.++++++|+.|++.|+++||+|
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~------------~~-------~--~~~Ty~el~~~~~~~A~~L~~~~v~~gdrV 66 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL------------GR-------G--GRLTYRELDRRANRLAAALQALGVKPGDRV 66 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc------------CC-------C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 34579999999999999999999973 32 0 149999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
+|+++|++++++++|||+++|++++|+||.+...++.++++++++++++++....+.+.......+....+........
T Consensus 67 ail~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (534)
T COG0318 67 AILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADD- 145 (534)
T ss_pred EEECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccc-
Confidence 9999999999999999999999999999999999999999999999999998855555555444433333332221110
Q ss_pred cCCCccCCCCCceE-eeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC--CC
Q 004568 239 KDSGVSGGISNWTV-SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN--PG 315 (744)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~ 315 (744)
.. .+++++...............++|+++++|||||||.||||++||+|++.+.......+ . ++
T Consensus 146 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~ 212 (534)
T COG0318 146 ------------RLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLT 212 (534)
T ss_pred ------------cccccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCC
Confidence 00 24555533222222222236799999999999999999999999999999988888887 6 89
Q ss_pred CCcEEEecCChHHHHHHHHHHHH-HHhcceEEeCC-----cccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 316 RSDVYLAYLPLAHVLELAAESIM-LCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 316 ~~d~~l~~~Pl~h~~g~~~~~~~-l~~G~~~v~~~-----~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
++|++++++|++|++|+...+.+ ++.|+++++.. +..++.. +.++++|++.++|+++..++++
T Consensus 213 ~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~-----------i~~~~~t~~~~vPt~~~~ll~~ 281 (534)
T COG0318 213 PDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL-----------IEKYKVTVLSGVPTFLRELLDN 281 (534)
T ss_pred CCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH-----------HHHhcceEEecchHHHHHHHhC
Confidence 99999999999999999987655 88999998844 3333333 8888899999999999998764
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcC-cEEEEEEecCCCCHHHHHHHHhh
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG-RIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
..... ...+ ++|++++||+++++++.+.+++.
T Consensus 282 ~~~~~-----------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~ 314 (534)
T COG0318 282 PEKDD-----------------------------------------------DDLSSSLRLVLSGGAPLPPELLERFEER 314 (534)
T ss_pred CccCc-----------------------------------------------cccccceEEEEecCCcCCHHHHHHHHHH
Confidence 21110 0012 39999999999999999999998
Q ss_pred cC-CceecccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCC
Q 004568 469 MG-APIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545 (744)
Q Consensus 469 ~g-~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~ 545 (744)
++ ..++++||+||+++.++.....+ ...+++|+|+|+++++|+|++.+.. . +|++|||+|+||+++.|||++|
T Consensus 315 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~---~-pg~vGei~irgp~v~~GY~~~p 390 (534)
T COG0318 315 FGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEV---L-PGEVGEIWVRGPNVMKGYWNRP 390 (534)
T ss_pred hCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCcc---C-CCCceEEEEECchhhhhhcCCh
Confidence 87 47999999999998888777665 4568889999999999999544422 2 3889999999999999999999
Q ss_pred cccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---e
Q 004568 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---Y 622 (744)
Q Consensus 546 ~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~ 622 (744)
+.|++.|. .+ |||+|||+|++|+||+++|+||.||+|+. +|+||+|.|||++|.+||.|.+|+|+|.+|+. .
T Consensus 391 e~t~~~f~--~~--gW~~TGDlg~~d~~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~ 465 (534)
T COG0318 391 EATAEAFD--ED--GWLRTGDLGYVDEDGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGER 465 (534)
T ss_pred HHHHHhhc--cC--CeeeecceEEEcCCccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCce
Confidence 99999885 34 89999999999999999999999999995 79999999999999999999999999999874 5
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccc
Q 004568 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEI 702 (744)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 702 (744)
++|+|+++++.. . ....++|.+ +++ .+++.|++
T Consensus 466 ~~a~v~~~~~~~-----------~------------~~~~~~i~~-----------------------~~~-~~l~~~~~ 498 (534)
T COG0318 466 VVAVVVLKPGGD-----------A------------ELTAEELRA-----------------------FLR-KRLALYKV 498 (534)
T ss_pred EEEEEEEcCCCC-----------C------------CCCHHHHHH-----------------------HHH-hhhhcccC
Confidence 999999986420 0 001256666 777 58999999
Q ss_pred eeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 703 PAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 703 P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
|+.|++++++ | +|++||++|+.|++.+.+
T Consensus 499 P~~v~~v~~l--P----~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 499 PRIVVFVDEL--P----RTASGKIDRRALREEYRA 527 (534)
T ss_pred CeEEEEeCCC--C----CCCchhhhHHHHHHHHHh
Confidence 9999999999 8 999999999999999987
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-75 Score=627.57 Aligned_cols=499 Identities=21% Similarity=0.279 Sum_probs=400.0
Q ss_pred HHHHHHHHh-CCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcC
Q 004568 86 ALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAE 163 (744)
Q Consensus 86 ~~~~~~a~~-~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~ 163 (744)
..++++... .+|+.|+++.. . .+..+.+||+||.+.++++|+.|++ .|+ +||||++++|
T Consensus 13 n~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp 73 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMP 73 (528)
T ss_pred hhhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcC
Confidence 356666654 47899999852 1 1222689999999999999999987 578 9999999999
Q ss_pred CcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhh--ccCC-CeeEEEEecCCCCCcC
Q 004568 164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLK-TIKNVIYFENDGSEKD 240 (744)
Q Consensus 164 n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~-~~~~ii~~~~~~~~~~ 240 (744)
+.+|.++++|||+++|++.+|+.+.++++++.+.+++++++++|+++......+... .... .+..++++...
T Consensus 74 ~~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~----- 148 (528)
T COG0365 74 NSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL----- 148 (528)
T ss_pred CCHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----
Confidence 999999999999999999999999999999999999999999999887654332211 0000 00013332221
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
. ..|.++...... .........+|+++|+|||||||+||||+++|+.++............+.++|++
T Consensus 149 ----------~-~~~~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~ 216 (528)
T COG0365 149 ----------G-LWYDEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRF 216 (528)
T ss_pred ----------c-ccHHHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEE
Confidence 1 556666654332 2223447899999999999999999999999998877776655433277899999
Q ss_pred EecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 321 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
++..++.|..|.+. .+.+|.+|+++++++-....+ +..+++.|+++++|++++.|+.++.|.+...
T Consensus 217 w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~-----~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-------- 283 (528)
T COG0365 217 WNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYS-----PERLWEALEKYKVTIFGTSPTFLRRLMKLGL-------- 283 (528)
T ss_pred EeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCC-----HHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------
Confidence 99999999999987 578899999998832111111 1223333999999999999999999976421
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccCh
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~ 479 (744)
.++.++++||.+.+.||||+++..+++.+.+|++|.+.||+
T Consensus 284 ---------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gq 324 (528)
T COG0365 284 ---------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQ 324 (528)
T ss_pred ---------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccc
Confidence 12234579999999999999999999999999999999999
Q ss_pred hhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc--cccccccCCCcccccccccCCC
Q 004568 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTSEVYKVDER 557 (744)
Q Consensus 480 TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~~t~~~f~~~~~ 557 (744)
||++.......+ ..+.++.|+|+||+++.|+| ++|+. +++++ |+|+++.+ +++++||+||+.+.+.|. +
T Consensus 325 TEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~---~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~---~ 395 (528)
T COG0365 325 TETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNP---VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF---G 395 (528)
T ss_pred cccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCc---CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh---h
Confidence 999966555544 44556669999999999999 55665 56788 99999987 999999999999999984 3
Q ss_pred cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHH
Q 004568 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (744)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~ 634 (744)
+||.|||.+++|+||+++|+||.||+||++ |++|.|.|||++|.+||.|.||+|+|.||+. .++|||+++++.
T Consensus 396 --~~y~tGD~~~~DedGy~~i~GR~DDvI~vs-G~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~- 471 (528)
T COG0365 396 --RWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGV- 471 (528)
T ss_pred --ceeecCceeEEccCCCEEEEeeccceEecc-CeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCC-
Confidence 399999999999999999999999999985 9999999999999999999999999998864 499999999753
Q ss_pred HHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCC
Q 004568 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWT 714 (744)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~ 714 (744)
. +. ++.++|++ +.++ .+.++..|++|++++++
T Consensus 472 ---------~----------~~---~L~~ei~~-----------------------~vr~-~~~~~~~p~~i~fv~~L-- 503 (528)
T COG0365 472 ---------E----------PN---ELAEEIRR-----------------------HVAR-NIGPHAIPRKIRFVDEL-- 503 (528)
T ss_pred ---------C----------hH---HHHHHHHH-----------------------HHHh-ccCcccCCceEEEecCC--
Confidence 0 11 44456666 6652 44449999999999999
Q ss_pred CCCCccccccccChHHHHHHHHH
Q 004568 715 PEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 715 p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
| +|.+|||.|+.|++.+.+
T Consensus 504 P----kT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 504 P----KTASGKIQRRLLRKILHK 522 (528)
T ss_pred C----CCCcccHHHHHHHHHHhh
Confidence 8 999999999999998863
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=656.29 Aligned_cols=542 Identities=21% Similarity=0.300 Sum_probs=428.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|+++++++|+++|+++. +. .++++++||+||.++++++|+.|.+.|+++||+|++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~-----------~~-------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai 99 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAER-----------GA-------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMI 99 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeec-----------cC-------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 478999999999999999999863 11 133468999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCC-----HHHHHHHHHhcCceEEEECchh--hhHHHHhhccCCCeeEEEEec
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG-----EDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFE 233 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~ 233 (744)
+++|+++|++++|||+++|+++||+++.++ .+++.+++++++++++|+++.. ...+..... ... .++..+
T Consensus 100 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~ 176 (614)
T PRK08180 100 LSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVR 176 (614)
T ss_pred ecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEec
Confidence 999999999999999999999999999998 7999999999999999998642 222222111 112 233322
Q ss_pred CCCCCcCCCccCCCCCceEeeHHHHHHcCCCCC--CCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (744)
.... .....+++++........ .......++|+++|+|||||||.||||++||+++++.+......+
T Consensus 177 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 245 (614)
T PRK08180 177 GAVP-----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF 245 (614)
T ss_pred CCCC-----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc
Confidence 2110 011245666554321111 111234679999999999999999999999999999888777666
Q ss_pred CCCC--CCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHH
Q 004568 312 PNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 312 ~~~~--~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~ 388 (744)
.+. .++++++++|++|.+++.. .+.+++.|+++++.+....... ...++..++++++|+++++|++|+.|++
T Consensus 246 -~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~----~~~~l~~i~~~~~t~~~~vP~~~~~l~~ 320 (614)
T PRK08180 246 -PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGG----FDETLRNLREISPTVYFNVPKGWEMLVP 320 (614)
T ss_pred -cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchh----HHHHHHHHHHhCCcEEechHHHHHHHHH
Confidence 443 5689999999999999765 4567999999988331100000 0112333899999999999999999876
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
...... .....++++||.+++||+++++++.+++.+.
T Consensus 321 ~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~ 357 (614)
T PRK08180 321 ALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRV 357 (614)
T ss_pred HHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHH
Confidence 432110 0112234689999999999999999888864
Q ss_pred ----cC--CceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccccccccc
Q 004568 469 ----MG--APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (744)
Q Consensus 469 ----~g--~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (744)
+| +++++.||+||++++++.........+++|+|+||++++|+|. +..|||+|+|++++.|||
T Consensus 358 ~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~-----------~~~GEi~vrg~~v~~GY~ 426 (614)
T PRK08180 358 AEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV-----------GGKLEVRVKGPNVTPGYW 426 (614)
T ss_pred HHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC-----------CCCcEEEEecCccchhhc
Confidence 33 6799999999998777665544556789999999999999872 346999999999999999
Q ss_pred CCCcccccccccCCCcceeEeeCcEEEE----cCCCeEEEEecCCCeEEcCCeeeec--cHHHHHHHhcCcCcceEEEEe
Q 004568 543 NNPGKTSEVYKVDERGMCWFYTGDIGQV----YPDGCLEIIDRKKDIVKLQHGEYIS--LGKVEAALISSDYVDNIMIHA 616 (744)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~----d~dG~l~i~GR~~d~Iki~~G~~V~--p~eIE~~l~~~p~V~~a~V~g 616 (744)
++|+.|++.|. .| |||+|||+|++ |+||+|+|+||+||+||+++|++|+ |.|||.++.+||+|++|+|+|
T Consensus 427 ~~p~~t~~~~~--~d--gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g 502 (614)
T PRK08180 427 RAPELTAEAFD--EE--GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITG 502 (614)
T ss_pred CChhHhHhhcc--cC--CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEc
Confidence 99999999985 46 89999999999 4689999999999999988899776 788999999999999999999
Q ss_pred cCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 617 DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 617 ~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
.++ ..++|+|+++++....++.+. ...+..+.+..+++++.+++.|.+ +.+ ..
T Consensus 503 ~~~-~~~~a~V~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~-----------------------~~~-~~ 555 (614)
T PRK08180 503 HDR-DEIGLLVFPNLDACRRLAGLL--ADASLAEVLAHPAVRAAFRERLAR-----------------------LNA-QA 555 (614)
T ss_pred CCC-CceEEEEEcCHHHHHHHHhhc--ccCCHHHHhcCHHHHHHHHHHHHH-----------------------HHh-hc
Confidence 985 468899999998777766544 222345566778888999988888 655 34
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.+.+++|+++++++++|+..+|.+|++||++|+++.+.|+++|++||+
T Consensus 556 ~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 556 TGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYA 603 (614)
T ss_pred cccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhC
Confidence 556779999999999988888999999999999999999999999995
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-73 Score=653.33 Aligned_cols=544 Identities=22% Similarity=0.315 Sum_probs=428.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...|+.++|+++++++||++|+++. ++. .+.++.+||+||.++++++|++|++.|+++||+|
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~-----------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 108 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR-----------EPG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV 108 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc-----------cCC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 45689999999999999999999863 211 1345689999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCH-----HHHHHHHHhcCceEEEECchh-hhHHHHhhccCCCeeEEEEe
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGE-----DALIHSLNETQVTTLICDSKQ-LKKLSAVSSSLKTIKNVIYF 232 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~ii~~ 232 (744)
+++++|+++|++++|||+++|++++|++|.++. +++.+++++++++++|+++.. .......... ...+ ++.+
T Consensus 109 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~i~~ 186 (624)
T PRK12582 109 MILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT-VVHV 186 (624)
T ss_pred EEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce-EEEE
Confidence 999999999999999999999999999999885 899999999999999998642 2221111111 1222 3333
Q ss_pred cCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCC--CCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhh
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (744)
+.... .....+++++......... ......++|+++|+|||||||.||||++||+++++.+......
T Consensus 187 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~ 255 (624)
T PRK12582 187 TGPGE-----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQL 255 (624)
T ss_pred cCCCc-----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHh
Confidence 32110 1123445555443221110 1123467899999999999999999999999999887766554
Q ss_pred CCCCCC---CcEEEecCChHHHHHHHHH-HHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHH
Q 004568 311 IPNPGR---SDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (744)
Q Consensus 311 ~~~~~~---~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l 386 (744)
. .... .+++++++|++|.+++... +.++..|+++++.+....... ...+...++++++|+++++|+++..|
T Consensus 256 ~-~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~~t~~~~vP~~~~~l 330 (624)
T PRK12582 256 R-PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGM----FEETIRNLREISPTVYGNVPAGYAML 330 (624)
T ss_pred c-cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccch----HHHHHHHHHhcCCeEEeccCHHHHHH
Confidence 4 3333 5899999999999998665 457889999988432111100 01122338899999999999999988
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHH
Q 004568 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (744)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 466 (744)
.+...... ..+..++++||.+++||+++++++.+++.
T Consensus 331 ~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~ 367 (624)
T PRK12582 331 AEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQ 367 (624)
T ss_pred HHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHH
Confidence 75421100 01112235899999999999999999888
Q ss_pred hhc------CCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccccccc
Q 004568 467 ICM------GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (744)
Q Consensus 467 ~~~------g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g 540 (744)
+.+ +++++++||+||++.+++.......+.+++|+|+||++++|++ .|+.|||+|+|++++.|
T Consensus 368 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~G 436 (624)
T PRK12582 368 ALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPG 436 (624)
T ss_pred HHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCccccc
Confidence 753 3689999999999877664444445678999999999999964 46789999999999999
Q ss_pred ccCCCcccccccccCCCcceeEeeCcEEEE-c---CCCeEEEEecCCCeEEcCCeeeeccHHHH--HHHhcCcCcceEEE
Q 004568 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQV-Y---PDGCLEIIDRKKDIVKLQHGEYISLGKVE--AALISSDYVDNIMI 614 (744)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~-d---~dG~l~i~GR~~d~Iki~~G~~V~p~eIE--~~l~~~p~V~~a~V 614 (744)
||++|+.|++.|. .+ |||+|||+|++ | ++|+|+|+||+||+||+++|++|+|.+|| .++.+||.|.+|+|
T Consensus 437 Y~~~p~~t~~~f~--~d--gw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~V 512 (624)
T PRK12582 437 YHKDPELTAAAFD--EE--GFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVV 512 (624)
T ss_pred ccCCccchhhhcC--cc--CCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEE
Confidence 9999999999996 56 89999999998 4 46999999999999998899999998885 68899999999999
Q ss_pred EecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHh
Q 004568 615 HADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKA 694 (744)
Q Consensus 615 ~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (744)
+|.+ +..+.++|+|+......++...+. +..+.++++++.+.+++.|.+ +.+
T Consensus 513 vG~~-~~~~g~lv~p~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~-----------------------~~~- 564 (624)
T PRK12582 513 AGQD-RAFIGLLAWPNPAACRQLAGDPDA---APEDVVKHPAVLAILREGLSA-----------------------HNA- 564 (624)
T ss_pred EcCC-CCcEEEEEecCHHHHHHHHhcCCC---CHHHHhcCHHHHHHHHHHHHH-----------------------HHh-
Confidence 9987 567899999999887666654332 245677788999999999998 555
Q ss_pred cCCCCcc-ceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 695 AKLDKFE-IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 695 ~~L~~~~-~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
.++.+. +|+++++++++|+.++|.+|++||++|+++.+.|+++||+||+
T Consensus 565 -~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~ 614 (624)
T PRK12582 565 -EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYA 614 (624)
T ss_pred -hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhc
Confidence 789998 9999999999988889999999999999999999999999995
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-72 Score=643.77 Aligned_cols=538 Identities=16% Similarity=0.175 Sum_probs=405.2
Q ss_pred CCCHHHHHHHHHHh--CCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 81 ASTMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 81 ~~tl~~~~~~~a~~--~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
.++..++++++++. +||++|+++.. ++ .+..+++||+||.++++++|+.|+++|+++||+|
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV 120 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYEC----------PY-------LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNV 120 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEEc----------CC-------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 35678889888765 79999998741 11 1223679999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECch---------hhhHHHHhhccCC-CeeE
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK---------QLKKLSAVSSSLK-TIKN 228 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~ 228 (744)
+++++|++|+++++|||+++|++++|+++.++.+++.++|+++++++||+++. ..+.+.++..... ...+
T Consensus 121 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (647)
T PTZ00237 121 LIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSN 200 (647)
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCE
Confidence 99999999999999999999999999999999999999999999999999752 2233333322111 1335
Q ss_pred EEEecCCCC---CcCCCccCCCCCceEeeHHHHHHcCC----CCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHH-H
Q 004568 229 VIYFENDGS---EKDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN-I 300 (744)
Q Consensus 229 ii~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~-l 300 (744)
++.+..... .....+...........|++++.... ..........++|+++|+|||||||.||||+++|++ +
T Consensus 201 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l 280 (647)
T PTZ00237 201 VITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL 280 (647)
T ss_pred EEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHH
Confidence 554422110 00000000000012245666654211 111122445789999999999999999999999998 4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeech
Q 004568 301 VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (744)
Q Consensus 301 ~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P 380 (744)
.+........+ ....+|++++..|++|+.+....+.+|+.|+++++.+...+... ..+..++..++++++|++.++|
T Consensus 281 ~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~--~~~~~~~~~i~~~~vt~~~~~P 357 (647)
T PTZ00237 281 VGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNK--HIEDDLWNTIEKHKVTHTLTLP 357 (647)
T ss_pred HHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCC--CchHHHHHHHHHhCeEEEEeCH
Confidence 44333334444 67788999999999998766666788999999988432110000 0012244449999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHH
Q 004568 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (744)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~ 460 (744)
++++.|.+...+... ......+++||.+++||++++++
T Consensus 358 ~~~~~l~~~~~~~~~------------------------------------------~~~~~~l~~Lr~i~~~G~~l~~~ 395 (647)
T PTZ00237 358 KTIRYLIKTDPEATI------------------------------------------IRSKYDLSNLKEIWCGGEVIEES 395 (647)
T ss_pred HHHHHHHhhCccccc------------------------------------------cccccCcchheEEEecCccCCHH
Confidence 999988753110000 00011235899999999999999
Q ss_pred HHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc---c
Q 004568 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---N 536 (744)
Q Consensus 461 ~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~ 536 (744)
+.+++++.+|+++++.||+||+++.++...... ...+++|+|+||++++|+| ++|.. +++|+.|||+++|| +
T Consensus 396 ~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~---~~~ge~GEl~v~~p~~p~ 471 (647)
T PTZ00237 396 IPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE---LNVNEIGEVAFKLPMPPS 471 (647)
T ss_pred HHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC---CCCCCceEEEEeccCCch
Confidence 999999989999999999999987655433322 2348999999999999999 56665 45889999999986 8
Q ss_pred ccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEe
Q 004568 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616 (744)
Q Consensus 537 v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g 616 (744)
++.|||++++.+.+.|.. .+ |||+|||+|++|+||+|+|+||.||+||+ +|+||+|.|||++|.+||.|.+|+|+|
T Consensus 472 ~~~gy~~~~~~~~~~f~~-~~--g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg 547 (647)
T PTZ00237 472 FATTFYKNDEKFKQLFSK-FP--GYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIG 547 (647)
T ss_pred hhCceeCCHHHHHHHHhC-CC--CEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEe
Confidence 999999999999987731 14 89999999999999999999999999997 699999999999999999999999999
Q ss_pred cCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHH
Q 004568 617 DPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAK 693 (744)
Q Consensus 617 ~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (744)
.+++ +.++|+|+++++. .+...+ .+.+.++|++ +++
T Consensus 548 ~~~~~~g~~~~a~Vv~~~~~-------~~~~~~-----------~~~l~~~i~~-----------------------~~~ 586 (647)
T PTZ00237 548 IYDPDCYNVPIGLLVLKQDQ-------SNQSID-----------LNKLKNEINN-----------------------IIT 586 (647)
T ss_pred eEcCCCCCEEEEEEEeccCc-------cccCCC-----------HHHHHHHHHH-----------------------HHH
Confidence 9875 4699999987531 000000 1345566777 777
Q ss_pred hcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 694 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 694 ~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
.+|++|++|+.|++++++ | +|++|||+|+.|++.+.
T Consensus 587 -~~l~~~~~P~~i~~v~~l--P----~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 587 -QDIESLAVLRKIIIVNQL--P----KTKTGKIPRQIISKFLN 622 (647)
T ss_pred -hhcCccccCcEEEEcCCC--C----CCCCccEeHHHHHHHHc
Confidence 689999999999999999 8 99999999999999874
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=633.49 Aligned_cols=522 Identities=22% Similarity=0.269 Sum_probs=406.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|+++++++|+++|+++ +++ .+||+||.++++++|++|.++|+++||+|++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v 62 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAI 62 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999974 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhh-ccCCCeeEEEEecCCCCCc
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~ 239 (744)
+++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++.......... ..++.++.++..+......
T Consensus 63 ~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 142 (563)
T PLN02860 63 AALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142 (563)
T ss_pred EcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc
Confidence 999999999999999999999999999999999999999999999999876533333221 2344455555544321100
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
.. ........+++...............++++++|+|||||||.||||+++|++++.........+ ++.++|+
T Consensus 143 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~ 215 (563)
T PLN02860 143 FI------FLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDV 215 (563)
T ss_pred cc------chhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCE
Confidence 00 0001111222211110111111234678999999999999999999999999998777766666 8899999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
+++++|++|.+++...+.++..|+++++ +++..+++. ++++++|++.++|+++..|.+......
T Consensus 216 ~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~-- 282 (563)
T PLN02860 216 YLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQA-----------IKQHNVTSMITVPAMMADLISLTRKSM-- 282 (563)
T ss_pred EEEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHH-----------HHHhCCeeEEeChHHHHHHHHhhhhhh--
Confidence 9999999999999877888999999988 344444444 999999999999999999876421100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceec
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~ 475 (744)
.....++||.+++||+++++++.+.+++.+ ++++++
T Consensus 283 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~ 319 (563)
T PLN02860 283 -------------------------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFS 319 (563)
T ss_pred -------------------------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceec
Confidence 001125899999999999999999998887 789999
Q ss_pred ccChhhhcccccccCCCC-----------------------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEE
Q 004568 476 AYGLTETCAGSTFSEWDD-----------------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v 532 (744)
.||+||+++.++...... ....++|+|+|+++++|++.+ +|+.|||+|
T Consensus 320 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~---------~g~~Gel~v 390 (563)
T PLN02860 320 AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE---------SSRVGRILT 390 (563)
T ss_pred CCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC---------CCceeEEEE
Confidence 999999987654432211 112378999999999999832 467899999
Q ss_pred ccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceE
Q 004568 533 GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNI 612 (744)
Q Consensus 533 ~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a 612 (744)
+|++++.|||++|+.|++.|. .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|
T Consensus 391 ~g~~~~~GY~~~~~~t~~~~~--~~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~ 465 (563)
T PLN02860 391 RGPHVMLGYWGQNSETASVLS--ND--GWLDTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASV 465 (563)
T ss_pred ecCcccccccCCccccchhcc--CC--CeEEccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCccee
Confidence 999999999999999999886 55 89999999999999999999999999997 79999999999999999999999
Q ss_pred EEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhH
Q 004568 613 MIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL 689 (744)
Q Consensus 613 ~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 689 (744)
+|++.++. +.++|+|+++++.. +.. ....+..... ....+.|++
T Consensus 466 ~v~~~~~~~~~~~~~a~v~~~~~~~--~~~------~~~~~~~~~~---~~~~~~l~~---------------------- 512 (563)
T PLN02860 466 VVVGVPDSRLTEMVVACVRLRDGWI--WSD------NEKENAKKNL---TLSSETLRH---------------------- 512 (563)
T ss_pred EEEEEecCcCCceEEEEEEECCccc--ccc------ccchhhcccc---cccHHHHHH----------------------
Confidence 99998865 46999999876420 000 0000000000 011245666
Q ss_pred HHHHhcCCCCccceeEEEEe-cCCCCCCCCccccccccChHHHHHHHHHHHHhh
Q 004568 690 QVAKAAKLDKFEIPAKIKLM-PEPWTPEAGLVTAALKIKREQLKAKFKDDLQML 742 (744)
Q Consensus 690 ~~~~~~~L~~~~~P~~i~~~-~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~ 742 (744)
++++.+|++|++|+.++++ +++ | +|++|||+|++|++++.++++.+
T Consensus 513 -~~~~~~L~~~~~P~~~~~~~~~l--P----~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 513 -HCREKNLSRFKIPKLFVQWRKPF--P----LTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred -HHhhCcccccccceEEEEEecCC--C----CCcccchhHHHHHHHHHHHHhcc
Confidence 7774479999999999876 556 8 99999999999999998887653
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-70 Score=648.36 Aligned_cols=565 Identities=20% Similarity=0.313 Sum_probs=456.2
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCC
Q 004568 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (744)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd 156 (744)
+++...|+.++|.+.++++|+++|+..+. + .++++++||+|+.++++++|++|.++|+++||
T Consensus 422 ~~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GD 483 (1452)
T PTZ00297 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRPGD 483 (1452)
T ss_pred CcccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 34566899999999999999999997421 0 13456899999999999999999999999999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCC
Q 004568 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 157 ~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
+|+|+++|++||+++++||+++|+++||+++ +.+++.+++++++++++|++.+..+.+..+.. +.++++|+++...
T Consensus 484 rVaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~ 559 (1452)
T PTZ00297 484 VIGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFY 559 (1452)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCc
Confidence 9999999999999999999999999999985 46799999999999999999888777665543 3688999886421
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCCCCC-CCCCCCCCeEEEEe---cCCCCCcchhhhhchHHHHHHHHHHHhhC-
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMY---TSGSTGLPKGVMITHGNIVATAAAIKTLI- 311 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~a~i~~---TSGTTG~PKgV~~sh~~l~~~~~~~~~~~- 311 (744)
...... .....+....+|+++...+...... .....++|++.|+| ||||||.||||++||+|+++.+.......
T Consensus 560 ~~~~~~-~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~ 638 (1452)
T PTZ00297 560 DEDDHA-VARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV 638 (1452)
T ss_pred cccccc-ccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc
Confidence 100000 0001134567899998876432211 23447889999996 99999999999999999999998875432
Q ss_pred -CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 312 -PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 312 -~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
+...++|++++++|++|+++....+.+++.|++++++++..+++. |++++||++++||++|+.+.+.+
T Consensus 639 ~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~i 707 (1452)
T PTZ00297 639 LPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQL 707 (1452)
T ss_pred ccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHHH
Confidence 245678999999999999998777778999999988887777777 99999999999999999999999
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecC--CCCHHHHHHHHhh
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA--PLSADSQRFINIC 468 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~--~l~~~~~~~~~~~ 468 (744)
.+.....+.+++++|+++++.+...+.. .....+++|+++|+++++.+|+++|.+++||+ +++..+..
T Consensus 708 ~~~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~----- 777 (1452)
T PTZ00297 708 SRANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE----- 777 (1452)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-----
Confidence 8888888889999999999987665441 12345689999999999999999999999984 55544333
Q ss_pred cCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccc
Q 004568 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (744)
Q Consensus 469 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (744)
++++..+||+||+. +.+.+.+.. ..|.|+|++++||.+.++.+. .+..|||+++ |++||++|
T Consensus 778 -~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~-----~~~~GEIlvr-------~~kdpe~T 839 (1452)
T PTZ00297 778 -HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSD-----GAGIGQLVLA-------KKGEPRRT 839 (1452)
T ss_pred -CceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccC-----CCCCCeEEEE-------ECCChHHH
Confidence 57788999999953 334444433 349999999999998544332 1246999995 56899999
Q ss_pred ccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCeEEEEEE
Q 004568 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVV 628 (744)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv 628 (744)
++.+ + ||+ +||+|+|+||+||+||+++|++|+|+.||+.+.++|.|.+++|+|++. +.++|+|+
T Consensus 840 ~e~~----~--gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVv 903 (1452)
T PTZ00297 840 LPIA----A--QWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVS 903 (1452)
T ss_pred HHhh----C--cCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEE
Confidence 9853 3 785 699999999999999999999999999999999999999999999874 45999999
Q ss_pred cCHHHHH-HHHHHhCCCCC-------CHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 629 PSHKALE-KWAHEASIKYE-------DLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 629 ~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
|+.+.+. +|+++.|+... +..+++++. .+.+.+.+++ ..+...+..+
T Consensus 904 pd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~--~~~v~~~i~~-----------------------V~~~n~l~~~ 958 (1452)
T PTZ00297 904 PNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYA--SSLLTADFAC-----------------------IAKENGLHPS 958 (1452)
T ss_pred eCHHHHHHHHHHHcCCCccccccccCCHHHHHHhH--HHHHHHHHHH-----------------------HHHHhCcCcc
Confidence 9999999 99999887531 345555432 2234444433 3333568889
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhhC
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLYQ 744 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y~ 744 (744)
++++.+.+++++|++++|++|++.|++|+.+.+.|+++|++||+
T Consensus 959 ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297 959 NVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYS 1002 (1452)
T ss_pred ceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999995
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=555.31 Aligned_cols=498 Identities=22% Similarity=0.309 Sum_probs=425.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...|+.+++.++|+++||++|+++ |. +.+||+||+++++++|.+|+++|+++||+|
T Consensus 25 W~d~~l~d~L~~~A~~~pdriAv~d-------------~~----------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~v 81 (542)
T COG1021 25 WQDRTLTDILTDHAARYPDRIAVID-------------GE----------RRLSYAELDQRADRLAAGLRRLGIKPGDTV 81 (542)
T ss_pred ccCCcHHHHHHHHHhhcCCceEEec-------------Cc----------ccccHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4558999999999999999999984 33 369999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh-----hhHHHHhhccCCCeeEEEEec
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFE 233 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~ 233 (744)
.+.+||..++++++||++++|+.+|.--|.....+|.+..+.++++.+|.+... .+...+.....+.++++++.+
T Consensus 82 lvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~g 161 (542)
T COG1021 82 LVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAG 161 (542)
T ss_pred EEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEcc
Confidence 999999999999999999999999999899999999999999999999998753 356666778889999999874
Q ss_pred CCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (744)
+.+.. ......+........+..+.+++++|++..+.||||.||.+..||.....++....+.+ +
T Consensus 162 e~~~~--------------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~ 226 (542)
T COG1021 162 EAEHP--------------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-G 226 (542)
T ss_pred CCCCc--------------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-C
Confidence 43211 11122222222222234567788999999999999999999999999999999988888 9
Q ss_pred CCCCcEEEecCChHHHHHHHH--HHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~--~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~ 388 (744)
++..+++|+.+|..|.+-+.. .+..+..|+++|+ .+|...+.. |+++++|+..+||.+...+++
T Consensus 227 ~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlq 295 (542)
T COG1021 227 FDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQ 295 (542)
T ss_pred cCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHH
Confidence 999999999999999988765 5677999999999 455555555 999999999999999998887
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
.... +..+++|||.+-+||+.+++++.+++...
T Consensus 296 a~e~-----------------------------------------------~~~~LsSLrllQVGGarl~~~~Arrv~~~ 328 (542)
T COG1021 296 AAEW-----------------------------------------------ERADLSSLRLLQVGGARLSATLARRVPAV 328 (542)
T ss_pred hhhc-----------------------------------------------ccCCchheeEEeecCcccCHHHHhhchhh
Confidence 5332 12234799999999999999999999999
Q ss_pred cCCceecccChhhhcccccccCCCCCC---CCccCCCc-CccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCC
Q 004568 469 MGAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (744)
Q Consensus 469 ~g~~i~~~YG~TE~~~~~~~~~~~~~~---~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (744)
+||.+-+.+||.|.-. .+...++.. ..+-|+|+ |.-+++|+| ++|++ +++|+.|+|.++||..++|||+.
T Consensus 329 lgC~LQQVFGMAEGLv--nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~p---v~pGE~G~LltRGPYTirGYyra 402 (542)
T COG1021 329 LGCQLQQVFGMAEGLV--NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNP---VAPGEVGELLTRGPYTIRGYYRA 402 (542)
T ss_pred hCchHHHHhhhhhhhh--cccccCCchHheeecCCCcCCCcceeEEec-CCCCC---CCCCCcceeeecCCeeeeeeccC
Confidence 9999999999999544 344444432 26889999 889999999 77776 56999999999999999999999
Q ss_pred CcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---C
Q 004568 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (744)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~ 621 (744)
|+.++++|+ .+ |+|+|||++++|+||+|.+.||.||+|+ |+||+|..+|||+.|..||.|.+|++++.+|+ +
T Consensus 403 p~HNa~aF~--a~--GFYrsGD~V~~~~dGyl~V~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGE 477 (542)
T COG1021 403 PEHNARAFD--AD--GFYRSGDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477 (542)
T ss_pred chhhhhccC--cC--CceecCceeEecCCceEEEEeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCc
Confidence 999999998 66 9999999999999999999999999999 89999999999999999999999999999986 5
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
..+||||+++..+. . .+|+. |+.+..|..|+
T Consensus 478 ksCAfiv~~~~~~~----------------------~----~qlr~-----------------------~L~~~GlAa~K 508 (542)
T COG1021 478 KSCAFIVVKEPPLR----------------------A----AQLRR-----------------------FLRERGLAAFK 508 (542)
T ss_pred ceeEEEEecCCCCC----------------------H----HHHHH-----------------------HHHHcchhhhc
Confidence 68999998875311 1 34555 66558999999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+|.+|.+++.+ | +|+-|||+|++|++.+...
T Consensus 509 ~PDrie~v~~~--P----~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 509 LPDRIEFVDSL--P----LTAVGKIDKKALRRRLASR 539 (542)
T ss_pred CCcceeecccC--C----CcccccccHHHHHHHhhhh
Confidence 99999999999 8 8999999999999987653
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=632.59 Aligned_cols=530 Identities=22% Similarity=0.274 Sum_probs=418.1
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|++++|.++++++|+++|+++... ++. ....+++||+||.++++++|+.|+++|+++||+|+++
T Consensus 25 ~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~ 89 (632)
T PRK07529 25 ASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL 89 (632)
T ss_pred CCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6899999999999999999987421 111 1233579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh-----hhHHHHhhccCCCeeEEEEecCCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
++|++++++++|||+++| +++|+++.++++++.+++++++++++|++... .+.+.......+.++.++.++...
T Consensus 90 ~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (632)
T PRK07529 90 LPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLAR 168 (632)
T ss_pred CCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcc
Confidence 999999999999999999 57999999999999999999999999997543 345555556667777777765432
Q ss_pred CCc-CCCc-c---CCCCCceEeeHHHHHHcCCCCCC-CCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhh
Q 004568 237 SEK-DSGV-S---GGISNWTVSSFSEVEKLGKRSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (744)
Q Consensus 237 ~~~-~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (744)
... .... . ....+..+..+.+.+........ ......++++++++|||||||.||+|++||+++++.+......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~ 248 (632)
T PRK07529 169 YLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALL 248 (632)
T ss_pred cccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHh
Confidence 100 0000 0 00012234456665544322211 1234467999999999999999999999999999988877777
Q ss_pred CCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 311 ~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
+ .+.++|++++.+|++|.+++.. .+.++..|+++++.++..+.+.. ....++..++++++|++.++|+++..+.+.
T Consensus 249 ~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 325 (632)
T PRK07529 249 L-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGVPTVYAALLQV 325 (632)
T ss_pred c-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch--HHHHHHHHHHHhCCeEEEeHHHHHHHHHhC
Confidence 7 7889999999999999999875 46779999999996654332210 012344559999999999999999988752
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 469 (744)
... ....++||.+++||+++++++.+.+++.+
T Consensus 326 ~~~------------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~ 357 (632)
T PRK07529 326 PVD------------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAAT 357 (632)
T ss_pred ccc------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence 100 01125899999999999999999999999
Q ss_pred CCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecC-CCCccCCCCCCCCcEEEEccccccccccCCCcc
Q 004568 470 GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWD-EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~-~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (744)
|+++++.||+||++.+++.+.... ...+++|+|+|+++++|+..+ ++.+...+++|+.|||+|+||+++.||++++ .
T Consensus 358 g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~ 436 (632)
T PRK07529 358 GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-H 436 (632)
T ss_pred CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-c
Confidence 999999999999988776665443 356899999999999997533 3433344789999999999999999999865 4
Q ss_pred cccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEE
Q 004568 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCV 624 (744)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~ 624 (744)
+...|. .+ |||+|||+|++|+||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++
T Consensus 437 ~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~ 511 (632)
T PRK07529 437 NKGLWL--ED--GWLNTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPV 511 (632)
T ss_pred cccccc--CC--CceEcCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeE
Confidence 556664 45 89999999999999999999999999996 7999999999999999999999999998865 3589
Q ss_pred EEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCC-Cccce
Q 004568 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLD-KFEIP 703 (744)
Q Consensus 625 A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~P 703 (744)
|+|++.++. +.+ .++|++ +++ .+|+ .+++|
T Consensus 512 a~v~l~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~~P 542 (632)
T PRK07529 512 AYVQLKPGA----------SAT---------------EAELLA-----------------------FAR-DHIAERAAVP 542 (632)
T ss_pred EEEEEcCCC----------CCC---------------HHHHHH-----------------------HHH-HhcchhccCC
Confidence 999987642 111 135555 666 4665 58999
Q ss_pred eEEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 704 AKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 704 ~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
+.|++++++ | +|++|||+|++|++.+....
T Consensus 543 ~~i~~v~~l--P----~t~~GKi~r~~Lr~~~~~~~ 572 (632)
T PRK07529 543 KHVRILDAL--P----KTAVGKIFKPALRRDAIRRV 572 (632)
T ss_pred cEEEEecCC--C----CCCCCcccHHHHHHHHHHHH
Confidence 999999998 8 99999999999999886543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=623.48 Aligned_cols=495 Identities=21% Similarity=0.246 Sum_probs=391.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..++.+.|.+.++++|+++|+.+. ++ +++||+||.++++++|+.|.+ .+||+|+|
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~---~~gd~Val 72 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSK---YPDQHIGI 72 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhh---ccCCeEEE
Confidence 378999999999999999998752 11 269999999999999999987 38999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCC-CeeEEEEecCCCCCc
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-TIKNVIYFENDGSEK 239 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~ 239 (744)
+++|++++++++|||+++|++++|+++.++.+++.++|++++++++|++.+....+........ ....++.++....
T Consensus 73 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 150 (539)
T PRK06334 73 MMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK-- 150 (539)
T ss_pred EcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh--
Confidence 9999999999999999999999999999999999999999999999999877665554332110 1113333322100
Q ss_pred CCCccCCCCCceEeeHHHHHHcC----CCC-----CCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhh
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLG----KRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 310 (744)
...+.+..... ... ........++|+++|+|||||||.||||++||+++..........
T Consensus 151 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 218 (539)
T PRK06334 151 ------------ELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF 218 (539)
T ss_pred ------------hccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh
Confidence 00011110000 000 001124567999999999999999999999999999988877777
Q ss_pred CCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC----CcccccccchhhccCccccceEecceEEeechHHHHH
Q 004568 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (744)
Q Consensus 311 ~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~ 385 (744)
+ ++.++|++++++|++|.+++.. .+.++..|+++++. ++..+++. |+++++|++.++|++++.
T Consensus 219 ~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ 286 (539)
T PRK06334 219 F-SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM-----------IDEAKVTFLGSTPVFFDY 286 (539)
T ss_pred c-CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHH
Confidence 7 8889999999999999999865 46779999999873 33344444 999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHH
Q 004568 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (744)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 465 (744)
|++..... ....++||.+++||+++++++.+++
T Consensus 287 l~~~~~~~-----------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~ 319 (539)
T PRK06334 287 ILKTAKKQ-----------------------------------------------ESCLPSLRFVVIGGDAFKDSLYQEA 319 (539)
T ss_pred HHHhhhhc-----------------------------------------------ccccccccEEEECCccCCHHHHHHH
Confidence 87642110 0112589999999999999999999
Q ss_pred Hhhc-CCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 466 NICM-GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 466 ~~~~-g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
.+.+ ++.+++.||+||++.+++...... ...+++|+|++|++++|+|++++.. +++|+.|||+|+|++++.|||+
T Consensus 320 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~ 396 (539)
T PRK06334 320 LKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVP---VSSGETGLVLTRGTSLFSGYLG 396 (539)
T ss_pred HHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCcc---CCCCceEEEEEecCcccccccC
Confidence 8887 689999999999987776554332 2346899999999999998545544 5689999999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcce------EEEEec
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN------IMIHAD 617 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~------a~V~g~ 617 (744)
+++.+.... .++.|||+|||+|++|++|+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+ ++|++.
T Consensus 397 ~~~~~~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~ 472 (539)
T PRK06334 397 EDFGQGFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGL 472 (539)
T ss_pred Cccccccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcC
Confidence 998765332 233489999999999999999999999999997 6999999999999999999998 888998
Q ss_pred CCCC-eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 618 PFHN-YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 618 ~~~~-~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
++.. .++++++..... +++++ ++++..
T Consensus 473 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~-----------------------~l~~~~ 500 (539)
T PRK06334 473 PGEKVRLCLFTTFPTSI-----------------------------SEVND-----------------------ILKNSK 500 (539)
T ss_pred CCCceEEEEEEeccCCh-----------------------------HHHHH-----------------------HHHhcC
Confidence 8664 355555532111 34556 666345
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
++.|++|+.|++++++ | +|++|||+|++|++.....
T Consensus 501 ~~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~~ 536 (539)
T PRK06334 501 TSSILKISYHHQVESI--P----MLGTGKPDYCSLNALAKSL 536 (539)
T ss_pred Ccccccchheeeeccc--c----cccCCcccHHHHHHHHHHh
Confidence 8999999999999999 8 9999999999999875543
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=633.64 Aligned_cols=525 Identities=18% Similarity=0.192 Sum_probs=401.9
Q ss_pred CHHHHHHHHHH-hCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 83 TMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 83 tl~~~~~~~a~-~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
...++|+++++ .+|+++|+++.. ++ .+..+.+||+||.++++++|+.|+++|+++||+|+++
T Consensus 89 ~~~~~l~~~~~~~~~~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~ 151 (666)
T PLN02654 89 ICYNCLDRNVEAGNGDKIAIYWEG----------NE-------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIY 151 (666)
T ss_pred HHHHHHHHhhccCCCCCEEEEEEc----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 44788888876 499999998731 11 1233689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhh---------HHHHhhccC----CCeeE
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK---------KLSAVSSSL----KTIKN 228 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~----~~~~~ 228 (744)
++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+....... .....
T Consensus 152 ~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
T PLN02654 152 LPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGI 231 (666)
T ss_pred cCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccE
Confidence 99999999999999999999999999999999999999999999999876421 122211111 11122
Q ss_pred EEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH-HHHH
Q 004568 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAI 307 (744)
Q Consensus 229 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~ 307 (744)
++..+......... .... ......|+++..... .........++|+++|+|||||||.||||+++|++++.. ....
T Consensus 232 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~ 308 (666)
T PLN02654 232 CLTYENQLAMKRED-TKWQ-EGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTF 308 (666)
T ss_pred EEEecccccccccc-cccc-cCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHH
Confidence 22222211000000 0000 011223555543211 111223357899999999999999999999999998654 3445
Q ss_pred HhhCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCccc-ccccchhhccCccccceEecceEEeechHHHHH
Q 004568 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (744)
Q Consensus 308 ~~~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~-~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~ 385 (744)
...+ +++++|++++.+|++|.++... .+.+|+.|+++++.+... ..+ +..++..|+++++|++.++|++++.
T Consensus 309 ~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~ 382 (666)
T PLN02654 309 KYAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPD-----SGRCWDIVDKYKVTIFYTAPTLVRS 382 (666)
T ss_pred HHhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCC-----HHHHHHHHHHhCCeEEEeCHHHHHH
Confidence 5556 8899999999999999998765 467799999998843211 111 1223444999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHH
Q 004568 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (744)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 465 (744)
|.+...+. ......++||.++++|+++++++.+++
T Consensus 383 l~~~~~~~---------------------------------------------~~~~~l~~Lr~i~~~Ge~l~~~~~~~~ 417 (666)
T PLN02654 383 LMRDGDEY---------------------------------------------VTRHSRKSLRVLGSVGEPINPSAWRWF 417 (666)
T ss_pred HHhhCccc---------------------------------------------cccCChhheeEEEEecCCCCHHHHHHH
Confidence 87532100 001122589999999999999999999
Q ss_pred HhhcC---CceecccChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcc--cccc
Q 004568 466 NICMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVT 538 (744)
Q Consensus 466 ~~~~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~ 538 (744)
.+.+| +++.+.||+||+++......+. ...++++|+|++|++++|+| ++|.. ++.++.|||+|++ |+++
T Consensus 418 ~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~---~~~~~~Gel~v~~~~p~~~ 493 (666)
T PLN02654 418 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE---IEGECSGYLCVKKSWPGAF 493 (666)
T ss_pred HHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC---CCCCCceEEEEcCCCchhh
Confidence 98887 7899999999998766544332 23568999999999999999 66665 4567789999999 7899
Q ss_pred ccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecC
Q 004568 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618 (744)
Q Consensus 539 ~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~ 618 (744)
.|||+|++.+.+.|....+ |||+|||+|++|+||+++|+||.||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+
T Consensus 494 ~gy~~~~~~~~~~~~~~~~--g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~ 570 (666)
T PLN02654 494 RTLYGDHERYETTYFKPFA--GYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIE 570 (666)
T ss_pred hhhcCChHHHHHhhhhcCC--CEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999998887642224 89999999999999999999999999997 69999999999999999999999999998
Q ss_pred CCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhc
Q 004568 619 FHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAA 695 (744)
Q Consensus 619 ~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (744)
++. .++|+|++.++. .. + ++++++|++ +++ .
T Consensus 571 d~~~ge~~~a~Vvl~~~~----------~~--------~----~~l~~~l~~-----------------------~~~-~ 604 (666)
T PLN02654 571 HEVKGQGIYAFVTLVEGV----------PY--------S----EELRKSLIL-----------------------TVR-N 604 (666)
T ss_pred cCCCCeEEEEEEEECCCC----------CC--------C----HHHHHHHHH-----------------------HHH-H
Confidence 763 599999987642 11 1 233455665 666 5
Q ss_pred CCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 696 KLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 696 ~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|++|++|+.|++++++ | +|.+||++|+.|++.+..
T Consensus 605 ~L~~~~~P~~i~~v~~l--P----~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 605 QIGAFAAPDKIHWAPGL--P----KTRSGKIMRRILRKIASR 640 (666)
T ss_pred hCCCCcCCCEEEECCCC--C----CCCCcCchHHHHHHHHcC
Confidence 89999999999999999 8 999999999999998754
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=625.49 Aligned_cols=493 Identities=19% Similarity=0.252 Sum_probs=406.0
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.++|+++++++||++|+++ ++ +.+||+||.++++++|+.|.+.|+++||+|+++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~ 105 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALID------------ER-----------GTLTYAELDEQSNALARGLLALGVRAGDGVAVL 105 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEE------------CC-----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 4899999999999999999985 22 269999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.+..++.......
T Consensus 106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 181 (549)
T PRK07788 106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE---- 181 (549)
T ss_pred cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc----
Confidence 9999999999999999999999999999999999999999999999998877766555444444444433222110
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
.......+++++....... ..+..++++++++|||||||.||||+++|+++.+.+......+ .+..+|+++
T Consensus 182 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~ 252 (549)
T PRK07788 182 -----PSGSTDETLDDLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTL 252 (549)
T ss_pred -----cCCcCcccHHHHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEE
Confidence 0112345677766432221 2233467889999999999999999999999999888887777 888999999
Q ss_pred ecCChHHHHHHHHHHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 322 ~~~Pl~h~~g~~~~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
..+|++|.+++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+++......
T Consensus 253 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~---- 317 (549)
T PRK07788 253 LPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVL---- 317 (549)
T ss_pred EccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCccccc----
Confidence 99999999999877788999999988 445555554 999999999999999998875321100
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccC
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG 478 (744)
.....++||.+++||+++++++.+++.+.++++++|.||
T Consensus 318 -----------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG 356 (549)
T PRK07788 318 -----------------------------------------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYG 356 (549)
T ss_pred -----------------------------------------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccC
Confidence 001125899999999999999999999989999999999
Q ss_pred hhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCC
Q 004568 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (744)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (744)
+||++..+.....+ ...++++|+|+++++++|+| +++.. +++|+.|||+|+|+.++.||+++++. . + .+
T Consensus 357 ~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~---~~ 426 (549)
T PRK07788 357 STEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNE---VPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I---ID 426 (549)
T ss_pred cchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCC---CCCCCeEEEEEeCCCccccccCCCcc--c-c---cC
Confidence 99998665543322 23457999999999999999 56654 45799999999999999999998865 2 2 45
Q ss_pred cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHH
Q 004568 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (744)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~ 634 (744)
|||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|++.++.
T Consensus 427 --g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~- 502 (549)
T PRK07788 427 --GLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGA- 502 (549)
T ss_pred --CceecCceEEEcCCCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCC-
Confidence 89999999999999999999999999996 79999999999999999999999999988664 589999987532
Q ss_pred HHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCC
Q 004568 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWT 714 (744)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~ 714 (744)
..+ .++|++ +++ .+|++|++|.+|++++++
T Consensus 503 ---------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~P~~i~~v~~l-- 532 (549)
T PRK07788 503 ---------ALD---------------EDAIKD-----------------------YVR-DNLARYKVPRDVVFLDEL-- 532 (549)
T ss_pred ---------CCC---------------HHHHHH-----------------------HHH-HhhhcCCCCcEEEEeCCC--
Confidence 000 145666 666 689999999999999998
Q ss_pred CCCCccccccccChHHHHHH
Q 004568 715 PEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 715 p~~~~~t~~GKi~R~~l~~~ 734 (744)
| +|++||++|++|+++
T Consensus 533 P----~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 533 P----RNPTGKVLKRELREM 548 (549)
T ss_pred C----CCCCcCEeHHHhhcc
Confidence 8 999999999999753
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=632.71 Aligned_cols=522 Identities=19% Similarity=0.225 Sum_probs=411.3
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
+..+++|+++++++|+++|+++.. .. .++.+.+||+||.++++++|+.|+++|+++||+|+++
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 119 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWEG-----------DE------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIY 119 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 467888889999999999998741 10 1334689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh---------hhHHHHhhccCC-CeeEEEE
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLK-TIKNVIY 231 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~~ii~ 231 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.......+ .++.+++
T Consensus 120 ~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (625)
T TIGR02188 120 MPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV 199 (625)
T ss_pred CCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE
Confidence 999999999999999999999999999999999999999999999998753 233444444455 5666666
Q ss_pred ecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH-Hhh
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTL 310 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~-~~~ 310 (744)
++...... ... ......++++..... ....+....++|+++|+|||||||.||||+++|++++...... ...
T Consensus 200 ~~~~~~~~-----~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~ 272 (625)
T TIGR02188 200 VRRTGNPV-----PWV-EGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYV 272 (625)
T ss_pred EcCCCCCc-----Ccc-ccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhc
Confidence 65322110 000 011234566554322 1222345677899999999999999999999999987655443 334
Q ss_pred CCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcc-cccccchhhccCccccceEecceEEeechHHHHHHHH
Q 004568 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 311 ~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~-~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~ 388 (744)
+ ++.++|++++.+|++|..+... .+.+|..|+++++.+.. ...+ +..++..++++++|++.++|++++.|.+
T Consensus 273 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 346 (625)
T TIGR02188 273 F-DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPD-----PGRFWEIIEKHKVTIFYTAPTAIRALMR 346 (625)
T ss_pred c-CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCC-----hhHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 5 8889999999999999988654 56789999999884321 1111 1223444999999999999999998875
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
...+. .+...+++||.+++||+++++++.+++.+.
T Consensus 347 ~~~~~---------------------------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~ 381 (625)
T TIGR02188 347 LGDEW---------------------------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKV 381 (625)
T ss_pred cCCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHH
Confidence 31110 011123589999999999999999999888
Q ss_pred cC---CceecccChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCC-CCCCcEEEEcc--cccccc
Q 004568 469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK-PMPRGEIVVGG--FNVTAG 540 (744)
Q Consensus 469 ~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~-~g~~GEl~v~g--~~v~~g 540 (744)
++ +++++.||+||+++.++..... ..+++++|+|++|++++|+| ++|.. ++ +|+.|||+|+| |+++.|
T Consensus 382 ~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~---~~~~g~~GeL~v~~p~p~~~~g 457 (625)
T TIGR02188 382 VGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNP---VEGPGEGGYLVIKQPWPGMLRT 457 (625)
T ss_pred cCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCC---CCCCCCeEEEEEccCCCccccc
Confidence 75 7899999999998776544332 33568999999999999999 66665 45 78999999999 689999
Q ss_pred ccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC
Q 004568 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620 (744)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~ 620 (744)
||++++.+.+.+....+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 458 y~~~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~ 534 (625)
T TIGR02188 458 IYGDHERFVDTYFSPFP--GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDD 534 (625)
T ss_pred ccCChHHHHHHHhccCC--CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcC
Confidence 99999988887752234 89999999999999999999999999997 6999999999999999999999999998765
Q ss_pred ---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCC
Q 004568 621 ---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKL 697 (744)
Q Consensus 621 ---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 697 (744)
+.++|+|+++++. .. + +.+.++|++ +++ .+|
T Consensus 535 ~~g~~~~a~vv~~~~~----------~~--------~----~~~~~~l~~-----------------------~~~-~~l 568 (625)
T TIGR02188 535 IKGQAIYAFVTLKDGY----------EP--------D----DELRKELRK-----------------------HVR-KEI 568 (625)
T ss_pred CCCeEEEEEEEeCCCC----------CC--------C----HHHHHHHHH-----------------------HHH-hhc
Confidence 3589999987642 10 1 123355666 666 589
Q ss_pred CCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 698 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 698 ~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+.|++|+.|++++++ | +|.+||++|+.|++.+..
T Consensus 569 ~~~~~P~~i~~v~~l--P----~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 569 GPIAKPDKIRFVPGL--P----KTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred CCCccCcEEEECCCC--C----CCCCccchHHHHHHHHcC
Confidence 999999999999999 8 999999999999998754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-70 Score=627.92 Aligned_cols=529 Identities=16% Similarity=0.175 Sum_probs=404.5
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
+...++|+++++.+|+++|+++.+ .. .++.+.+||+||.++++++|+.|+++|+++||+|+++
T Consensus 52 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 114 (628)
T TIGR02316 52 NLCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY 114 (628)
T ss_pred eHHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445788989999999999998741 11 1234679999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh---------hhHHHHhhccC-CCeeEEEE
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY 231 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~~~~ii~ 231 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+.... .....++.
T Consensus 115 ~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 194 (628)
T TIGR02316 115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLL 194 (628)
T ss_pred cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999999998643 12232222222 23456666
Q ss_pred ecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH-HHHHHhh
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTL 310 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~ 310 (744)
++...... . . .......|+++.........+.....++++++|+|||||||.||||+++|++++.. .......
T Consensus 195 ~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 268 (628)
T TIGR02316 195 VDRGLAPM----R-L-IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAI 268 (628)
T ss_pred EeCCCCCc----C-c-ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence 65321110 0 0 00112346665443221111223346799999999999999999999999998644 3444455
Q ss_pred CCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 311 ~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
+ ++.++|++++.+|++|+.+... .+.+|+.|+++++.+....... +..++..++++++|+++++|++++.|.+.
T Consensus 269 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 343 (628)
T TIGR02316 269 F-GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD----PGVWWSIVERYGVRTMFSAPTAIRVLKKQ 343 (628)
T ss_pred c-CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence 6 8899999999999999988754 5678999999988432111100 12233449999999999999999887652
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 469 (744)
.... ......++||.+++||+++++++.+++...+
T Consensus 344 ~~~~---------------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~ 378 (628)
T TIGR02316 344 DAAW---------------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGL 378 (628)
T ss_pred CCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHh
Confidence 1000 0111235899999999999999999999989
Q ss_pred CCceecccChhhhcccccccCCC----CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc---ccccccc
Q 004568 470 GAPIGQAYGLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF 542 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~ 542 (744)
|.++++.||+||++..++..... ....+++|+|+||++++|+|.++|+. +++|+.|||+|+|| +++.|||
T Consensus 379 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~---~~~g~~Gel~v~gp~~~g~~~~~~ 455 (628)
T TIGR02316 379 GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP---CGPNEKGVLTVVPPLPPGCLSTVW 455 (628)
T ss_pred CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCC---CCCCCcEEEEEecCCCcccccccc
Confidence 99999999999998544332221 23458999999999999999546665 56889999999998 5789999
Q ss_pred CCCcccccccccC-CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC
Q 004568 543 NNPGKTSEVYKVD-ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (744)
Q Consensus 543 ~~~~~t~~~f~~~-~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~ 621 (744)
++++.+.+.+... .+ +||+|||+|++|+||+++|+||.||+||+ +|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 456 ~~~~~~~~~~~~~~~~--~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~ 532 (628)
T TIGR02316 456 GDDARFLKTYWSHFKR--PLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDEL 532 (628)
T ss_pred CChHHHHHhhhhcCCC--CEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCC
Confidence 9998877765321 23 79999999999999999999999999997 59999999999999999999999999998753
Q ss_pred ---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCC
Q 004568 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLD 698 (744)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 698 (744)
.++++|+++++. ... +......+.++|++ +++ .+|+
T Consensus 533 ~g~~~~~~vv~~~~~----------~~~-------~~~~~~~~~~~i~~-----------------------~~~-~~L~ 571 (628)
T TIGR02316 533 KGQVAVVFAILKESD----------SAG-------DAHDPHAVETGMMD-----------------------CVV-RQLG 571 (628)
T ss_pred CCeEEEEEEEEcCCc----------ccc-------cccchHHHHHHHHH-----------------------HHH-HhcC
Confidence 589999887532 000 00001233455666 666 6899
Q ss_pred CccceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 699 KFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 699 ~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
+|++|+.|++++++ | +|++||++|+.|++.+.
T Consensus 572 ~~~~P~~v~~v~~l--P----~t~sGKi~r~~L~~~~~ 603 (628)
T TIGR02316 572 AVARPARVYFVAAL--P----KTRSGKLLRRSIQALAE 603 (628)
T ss_pred CCcCCCEEEEcCCC--C----CCCchHHHHHHHHHHHc
Confidence 99999999999999 8 99999999999998764
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=626.08 Aligned_cols=520 Identities=19% Similarity=0.229 Sum_probs=407.7
Q ss_pred HHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 004568 84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163 (744)
Q Consensus 84 l~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 163 (744)
..++|+++++++|+++|+++.. .. .++.+.+||+||.++++++|+.|+++|+++||+|+++++
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 131 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWEG-----------DD------PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMP 131 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEEC-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 4678888999999999998731 10 123467999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh---------hHHHHhhccCCCeeEEEEecC
Q 004568 164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIYFEN 234 (744)
Q Consensus 164 n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~~~~ 234 (744)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+.......+.++.+++++.
T Consensus 132 n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (637)
T PRK00174 132 MIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRR 211 (637)
T ss_pred CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcC
Confidence 99999999999999999999999999999999999999999999987532 333444444556667776654
Q ss_pred CCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH-HhhCCC
Q 004568 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPN 313 (744)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~-~~~~~~ 313 (744)
..... .. .......++++.... ..........++|+++|+|||||||.||||+++|++++...... ...+ +
T Consensus 212 ~~~~~-----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~ 283 (637)
T PRK00174 212 TGGDV-----DW-VEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-D 283 (637)
T ss_pred CCCCc-----Cc-CCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-C
Confidence 32110 00 011233456655432 11222344567899999999999999999999999987655443 3345 7
Q ss_pred CCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcc-cccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~-~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
+.++|++++.+|++|..+... .+.+|..|+++++.+.. ...+ ...++..++++++|++.++|++++.|++...
T Consensus 284 ~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 358 (637)
T PRK00174 284 YKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPD-----PGRFWEVIDKHKVTIFYTAPTAIRALMKEGD 358 (637)
T ss_pred CCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCC-----hHHHHHHHHhcCCeEEeecHHHHHHHHhcCC
Confidence 888999999999999988754 56779999999883211 1111 1223334999999999999999998875311
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC-
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG- 470 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g- 470 (744)
... .....++||.+++||+++++++.+++.+.++
T Consensus 359 ~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~ 393 (637)
T PRK00174 359 EHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGG 393 (637)
T ss_pred ccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCC
Confidence 000 0112258999999999999999999988775
Q ss_pred --CceecccChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcc--ccccccccCC
Q 004568 471 --APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNN 544 (744)
Q Consensus 471 --~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~~ 544 (744)
+++++.||+||+++.++..... ..+.+++|+|++|++++|+| ++|.. +++|+.|||+|+| |+++.|||++
T Consensus 394 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~p~~~~gy~~~ 469 (637)
T PRK00174 394 ERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP---LEGGEGGNLVIKDPWPGMMRTIYGD 469 (637)
T ss_pred CCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC---CCCCCcEEEEEcCCCCcccccccCC
Confidence 7899999999998766543332 23457999999999999999 66655 4688999999999 6999999999
Q ss_pred CcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---C
Q 004568 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (744)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~ 621 (744)
++.+.+.|....+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +
T Consensus 470 ~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~ 546 (637)
T PRK00174 470 HERFVKTYFSTFK--GMYFTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQ 546 (637)
T ss_pred HHHHHHhhhcCCC--CEEECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCe
Confidence 9988877643234 89999999999999999999999999997 5999999999999999999999999998765 3
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
.++|+|++.++. .. + +.+.++|++ +++ .+|+.|+
T Consensus 547 ~~~a~vv~~~~~----------~~--------~----~~~~~~l~~-----------------------~l~-~~l~~~~ 580 (637)
T PRK00174 547 GIYAFVTLKGGE----------EP--------S----DELRKELRN-----------------------WVR-KEIGPIA 580 (637)
T ss_pred EEEEEEEECCCC----------CC--------C----HHHHHHHHH-----------------------HHH-hhcCCcc
Confidence 599999987642 00 1 223345555 666 5899999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|..|++++++ | +|++||++|+.|++.+..
T Consensus 581 ~P~~i~~v~~l--P----~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 581 KPDVIQFAPGL--P----KTRSGKIMRRILRKIAEG 610 (637)
T ss_pred CCCEEEEcCCC--C----CCCCcchHHHHHHHHHcC
Confidence 99999999998 8 999999999999988654
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-70 Score=725.66 Aligned_cols=520 Identities=20% Similarity=0.277 Sum_probs=424.8
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +.+++++...+++.+...++ ....+.+...|++++|+++++++||++|+++ ++.
T Consensus 3062 p~~~---~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~---- 3119 (3956)
T PRK12467 3062 PAAR---LGELPTLAAHERRQVLHAWN---ATAAAYPSERLVHQLIEAQVARTPEAPALVF------------GDQ---- 3119 (3956)
T ss_pred cCCc---hhhccCCCHHHHHHHHHhhc---cCCCCCCccccHHHHHHHHHHhCCCcceEee------------CCc----
Confidence 6666 88899888888877755555 2334445567999999999999999999987 333
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||+++++++|+.|.++|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 3120 -------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~ 3192 (3956)
T PRK12467 3120 -------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSG 3192 (3956)
T ss_pred -------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
++++|++....+.+... .. ..++.++. ................++++|||+|
T Consensus 3193 ~~~vlt~~~~~~~~~~~----~~-~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~a~ii~ 3244 (3956)
T PRK12467 3193 VKLLLTQAHLLEQLPAP----AG-DTALTLDR-----------------------LDLNGYSENNPSTRVMGENLAYVIY 3244 (3956)
T ss_pred CcEEEechhhhhhcccc----cC-Cceeeecc-----------------------hhhcccCCCCCcccCCCCceEEEEE
Confidence 99999998764433211 11 11122111 0000111111224457899999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++++.+.+....+ +++++|++++++|++|+.++...+.+|..|+++++.+ ....+ +.
T Consensus 3245 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~-----~~ 3317 (3956)
T PRK12467 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWD-----PE 3317 (3956)
T ss_pred ccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECC-cccCC-----HH
Confidence 99999999999999999999999998888 8999999999999999999988899999999999854 21111 12
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...|+++++|++.++|++++.+.+... ..
T Consensus 3318 ~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~-------------------------------------------------~~ 3348 (3956)
T PRK12467 3318 ELWQAIHAHRISIACFPPAYLQQFAEDAG-------------------------------------------------GA 3348 (3956)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------------------------cc
Confidence 23334999999999999999998865210 00
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhhhcccccccCCCC-----CCCCccCCCcCccEEEEEecCCC
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEG 516 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~v~i~d~~~~ 516 (744)
..++||.+++|||++++++.+.+.+.+ ++.++|.||+||++..++...... ....++|+|++|++++|+| +++
T Consensus 3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~ 3427 (3956)
T PRK12467 3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQL 3427 (3956)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCC
Confidence 125799999999999999998888766 678999999999998776543321 1236899999999999998 566
Q ss_pred CccCCCCCCCCcEEEEccccccccccCCCcccccccccCC---CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeee
Q 004568 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (744)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~ 593 (744)
.. +++|+.|||+|+|+++++||+|+|++|+++|..++ +|.+||+|||+|++++||+|+|+||+||+||+ +|+|
T Consensus 3428 ~~---vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki-~G~r 3503 (3956)
T PRK12467 3428 NP---VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKI-RGFR 3503 (3956)
T ss_pred CC---CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEee-ceEe
Confidence 54 67999999999999999999999999999998542 25589999999999999999999999999998 5999
Q ss_pred eccHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhcccc
Q 004568 594 ISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTL 671 (744)
Q Consensus 594 V~p~eIE~~l~~~p~V~~a~V~g~~~--~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 671 (744)
|+|.|||++|.+||+|.+|+|++..+ .+.++|||++..+. +...++|++
T Consensus 3504 Ie~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~-------------------------~~~~~~l~~---- 3554 (3956)
T PRK12467 3504 IELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQ-------------------------GDWRETLRD---- 3554 (3956)
T ss_pred ecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCC-------------------------cccHHHHHH----
Confidence 99999999999999999999998653 35799999987531 001245555
Q ss_pred ccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHH
Q 004568 672 VSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 735 (744)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~ 735 (744)
+++ .+||.||+|..|++++++ | +|++|||+|++|.+.+
T Consensus 3555 -------------------~l~-~~Lp~y~vP~~~~~l~~l--P----~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467 3555 -------------------HLA-ASLPDYMVPAQLLVLAAM--P----LGPNGKVDRKALPDPD 3592 (3956)
T ss_pred -------------------HHh-ccCChhhCCCeeeeeccC--C----CCCCCccchhhcCCCC
Confidence 666 699999999999999998 8 9999999999998654
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=609.55 Aligned_cols=504 Identities=22% Similarity=0.264 Sum_probs=410.1
Q ss_pred CCHHHHHHHHHH-hCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 82 STMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~a~-~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+.++++++++++ .+|+++|+.+. ++ ...+.+||+||.++++++|.+|.++|+++||+|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~a~~~~-----------~~--------~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i 103 (570)
T PRK04319 43 NIAYEAIDRHADGGRKDKVALRYL-----------DA--------SRKEKYTYKELKELSNKFANVLKELGVEKGDRVFI 103 (570)
T ss_pred eHHHHHHHHhhccCCCCceEEEEE-----------CC--------CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 456688998887 58999999874 21 11247999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|++++++++|||+++|++++|+++.++++++.+++++++++++|++......... ...+.++.++.++.....
T Consensus 104 ~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 179 (570)
T PRK04319 104 FMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE-- 179 (570)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC--
Confidence 9999999999999999999999999999999999999999999999999876543321 234556666665533210
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
.....++.++...... ........++++++|+|||||||.||||+++|+++++.+......+ ++.++|++
T Consensus 180 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~ 249 (570)
T PRK04319 180 --------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVY 249 (570)
T ss_pred --------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceE
Confidence 1123456665543222 1122345678999999999999999999999999998888777777 88899999
Q ss_pred EecCChHHHHHHHH-HHHHHHhcceEEe----CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHH
Q 004568 321 LAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (744)
Q Consensus 321 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~----~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~ 395 (744)
++.+|++|.++... .+.++..|+++++ +++..+++. ++++++|+++++|++++.+.+...+..
T Consensus 250 ~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~- 317 (570)
T PRK04319 250 WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRI-----------LEDYKVTVWYTAPTAIRMLMGAGDDLV- 317 (570)
T ss_pred EecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhcCCccc-
Confidence 99999999988654 5678999999887 334444444 999999999999999998865311000
Q ss_pred hhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceec
Q 004568 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (744)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~ 475 (744)
.....++||.+++||+++++++.+++++.+|.++++
T Consensus 318 --------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~ 353 (570)
T PRK04319 318 --------------------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHD 353 (570)
T ss_pred --------------------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEe
Confidence 001125899999999999999999999989999999
Q ss_pred ccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcc--ccccccccCCCccccccc
Q 004568 476 AYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEVY 552 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g--~~v~~gY~~~~~~t~~~f 552 (744)
.||+||++..++..... ...++++|+|+|+++++|+| +++.. +++|+.|||+++| ++++.|||++++.+.+.|
T Consensus 354 ~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~ 429 (570)
T PRK04319 354 NWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNE---LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF 429 (570)
T ss_pred ceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCC---CCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh
Confidence 99999998765544332 33568999999999999999 55554 4689999999997 899999999999999998
Q ss_pred ccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 004568 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVP 629 (744)
Q Consensus 553 ~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~ 629 (744)
.+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.|||++|.+||.|.+++|++.+++ +.++|+|++
T Consensus 430 ---~~--gw~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~ 503 (570)
T PRK04319 430 ---AG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503 (570)
T ss_pred ---cC--CceEeCcEEEECCCeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEE
Confidence 56 89999999999999999999999999997 6999999999999999999999999998865 358888987
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEe
Q 004568 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLM 709 (744)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~ 709 (744)
.++. .. . +.+.++|++ +++ .+|+.|++|+.|+++
T Consensus 504 ~~~~----------~~--------~----~~~~~~l~~-----------------------~~~-~~l~~~~~P~~i~~v 537 (570)
T PRK04319 504 RPGY----------EP--------S----EELKEEIRG-----------------------FVK-KGLGAHAAPREIEFK 537 (570)
T ss_pred CCCC----------CC--------C----HHHHHHHHH-----------------------HHH-HhcccccCCcEEEEe
Confidence 7532 00 1 123345666 666 689999999999999
Q ss_pred cCCCCCCCCccccccccChHHHHHHHH
Q 004568 710 PEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 710 ~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
+++ | +|++||++|++|+++..
T Consensus 538 ~~i--P----~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 538 DKL--P----KTRSGKIMRRVLKAWEL 558 (570)
T ss_pred CCC--C----CCCchhhhHHHHHHHHh
Confidence 999 8 99999999999998753
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=611.36 Aligned_cols=529 Identities=18% Similarity=0.200 Sum_probs=402.7
Q ss_pred CHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004568 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (744)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 162 (744)
..+++|+++++.+|+++|+++.. .. .+..+.+||+||.++++++|+.|+++|+++||+|++++
T Consensus 54 ~~~~~l~~~~~~~p~~~A~~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 116 (629)
T PRK10524 54 LCHNAVDRHLAKRPEQLALIAVS-----------TE------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYM 116 (629)
T ss_pred HHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 35888999999999999998741 11 12345799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh---------hhHHHHhhccC-CCeeEEEEe
Q 004568 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIYF 232 (744)
Q Consensus 163 ~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~~~~ii~~ 232 (744)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+.... .....++.+
T Consensus 117 ~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 196 (629)
T PRK10524 117 PMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLV 196 (629)
T ss_pred CCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999997642 23333333222 234556655
Q ss_pred cCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH-HHhhC
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLI 311 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~ 311 (744)
+...... . . .......+.++...............++++++|+|||||||.||||+++|++++..... ....+
T Consensus 197 ~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~ 270 (629)
T PRK10524 197 DRGLAPM----A-R-VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF 270 (629)
T ss_pred eCCCCCc----C-c-ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc
Confidence 4321100 0 0 00112345555433221111222346789999999999999999999999998655444 33445
Q ss_pred CCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
++.++|++++.+|++|..+... .+.+|+.|+++++.+....... ...++..++++++|+++++|++++.+.+..
T Consensus 271 -~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 345 (629)
T PRK10524 271 -GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD----AGIWWRIVEKYKVNRMFSAPTAIRVLKKQD 345 (629)
T ss_pred -CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC----hHHHHHHHHHcCceEEEeCHHHHHHHHhcC
Confidence 8889999999999999888654 5677999999988332111100 122344499999999999999998876521
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g 470 (744)
... ......++||.+++||+++++++.+++.+.++
T Consensus 346 ~~~---------------------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~ 380 (629)
T PRK10524 346 PAL---------------------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALG 380 (629)
T ss_pred ccc---------------------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcC
Confidence 000 00112258999999999999999999999899
Q ss_pred CceecccChhhhcccccccCC----CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc---cccccccC
Q 004568 471 APIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFN 543 (744)
Q Consensus 471 ~~i~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~~ 543 (744)
+++++.||+||++..+..... ...+.+++|+|++|++++|+|+++|.. +++|+.|||+|+|| +++.|||+
T Consensus 381 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~---~~~g~~Gel~i~gp~~~~~~~~~~~ 457 (629)
T PRK10524 381 VPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEP---CGPNEKGVLVIEGPLPPGCMQTVWG 457 (629)
T ss_pred CCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCC---CCCCCcEEEEEcCCCChhhcCCccC
Confidence 999999999999853322221 123458999999999999999436665 56899999999998 68899999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~--- 620 (744)
+++.+.+.+.... +.+||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus 458 ~~~~~~~~~~~~~-~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g 535 (629)
T PRK10524 458 DDDRFVKTYWSLF-GRQVYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKG 535 (629)
T ss_pred ChHHHHHhhhccC-CCcEEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCC
Confidence 9988776553211 2289999999999999999999999999998 5999999999999999999999999999876
Q ss_pred CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
+.++++|+++++. .. .+.+..+.+.++|++ +++ .+|+.|
T Consensus 536 ~~~~~~vv~~~~~----------~~-------~~~~~~~~~~~~i~~-----------------------~~~-~~l~~~ 574 (629)
T PRK10524 536 QVAVAFVVPKDSD----------SL-------ADREARLALEKEIMA-----------------------LVD-SQLGAV 574 (629)
T ss_pred eEEEEEEEECCCC----------cc-------ccccchHHHHHHHHH-----------------------HHH-hhcCCC
Confidence 3589999987642 00 011112334456666 666 689999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
++|..|++++++ | +|++||++|+.|++.+.
T Consensus 575 ~~P~~i~~v~~l--P----~T~sGKi~R~~L~~~~~ 604 (629)
T PRK10524 575 ARPARVWFVSAL--P----KTRSGKLLRRAIQAIAE 604 (629)
T ss_pred cCCCEEEEcCCC--C----CCCCcchHHHHHHHHHc
Confidence 999999999998 8 99999999999998764
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=600.06 Aligned_cols=501 Identities=22% Similarity=0.314 Sum_probs=407.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|++.++.+|+++|+++.. ++ .++++.+||+||.++++++|++|.+.|+++||+|++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val 85 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSC 85 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 3689999999999999999998631 11 133468999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh-----hhHHHHhhccCCCeeEEEEecCC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND 235 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 235 (744)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++++++++.. .+.+..+....+.++.++.++..
T Consensus 86 ~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (547)
T PRK13295 86 QLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD 165 (547)
T ss_pred ECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC
Confidence 9999999999999999999999999999999999999999999999998754 23333344445566666665432
Q ss_pred CCCcCCCccCCCCCceEeeHHHHHHcCC-----C--CCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH
Q 004568 236 GSEKDSGVSGGISNWTVSSFSEVEKLGK-----R--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (744)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (744)
. ..++.++..... . .........++++++|+|||||||.||+|+++|++++..+....
T Consensus 166 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~ 230 (547)
T PRK13295 166 G---------------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYA 230 (547)
T ss_pred C---------------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHH
Confidence 1 112333322110 0 01112334678999999999999999999999999999988877
Q ss_pred hhCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHH
Q 004568 309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (744)
Q Consensus 309 ~~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~ 384 (744)
..+ ++.++|++++.+|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|++.++|+++.
T Consensus 231 ~~~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~ 298 (547)
T PRK13295 231 ERL-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL-----------IRTEGVTFTMASTPFLT 298 (547)
T ss_pred HHh-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH-----------HHHcCCcEEEecHHHHH
Confidence 777 8899999999999999998765 56779999999883 34444444 99999999999999998
Q ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHH
Q 004568 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (744)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~ 464 (744)
.+....... ....++||.+++||+++++++.++
T Consensus 299 ~l~~~~~~~-----------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~ 331 (547)
T PRK13295 299 DLTRAVKES-----------------------------------------------GRPVSSLRTFLCAGAPIPGALVER 331 (547)
T ss_pred HHHhccccc-----------------------------------------------CCCcccceEEEEecCCCCHHHHHH
Confidence 886531100 011258999999999999999999
Q ss_pred HHhhcCCceecccChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccccccccc
Q 004568 465 INICMGAPIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542 (744)
Q Consensus 465 ~~~~~g~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (744)
+.+.+++++++.||+||++.+++..... .....++|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+
T Consensus 332 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~ 407 (547)
T PRK13295 332 ARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAP---LPAGQIGRLQVRGCSNFGGYL 407 (547)
T ss_pred HHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCC---CCCCCCCeEEEEcCccccccc
Confidence 9988899999999999998766544322 12346899999999999999 55554 568899999999999999999
Q ss_pred CCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC--
Q 004568 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH-- 620 (744)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~-- 620 (744)
++++.|+.. .+ |||+|||+|+++++|++++.||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++.
T Consensus 408 ~~~~~t~~~----~~--g~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~ 480 (547)
T PRK13295 408 KRPQLNGTD----AD--GWFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERL 480 (547)
T ss_pred CCccccccC----CC--CCeecceEEEEcCCceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCC
Confidence 999998765 34 79999999999999999999999999997 7999999999999999999999999998765
Q ss_pred -CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCC
Q 004568 621 -NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDK 699 (744)
Q Consensus 621 -~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 699 (744)
..++++|++.++. ..+ .+++.+ ++++..|+.
T Consensus 481 g~~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~~~~l~~ 512 (547)
T PRK13295 481 GERACAFVVPRPGQ----------SLD---------------FEEMVE-----------------------FLKAQKVAK 512 (547)
T ss_pred CcEEEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHHhccCcc
Confidence 3589999887531 000 134455 555358999
Q ss_pred ccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 700 FEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 700 ~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
|++|.++++++++ | +|.+||++|++|++.+.+
T Consensus 513 ~~~P~~i~~v~~l--P----~t~sgK~~r~~L~~~~~~ 544 (547)
T PRK13295 513 QYIPERLVVRDAL--P----RTPSGKIQKFRLREMLRG 544 (547)
T ss_pred ccCCcEEEEeccC--C----CCCCccccHHHHHHHHhc
Confidence 9999999999999 8 999999999999988754
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=610.59 Aligned_cols=519 Identities=15% Similarity=0.129 Sum_probs=391.7
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.+.+.+ ++++++|+++.. . .+..+.+||+||.++++++|+.|+++|+++||+|+++
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~~-----------~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~ 145 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYVD-----------E-------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGY 145 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEEC-----------C-------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 344444433 468999998742 1 1334679999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh---------hhHHHHhhccCCCeeEEEEe
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYF 232 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~ 232 (744)
++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++...++.++.++.+
T Consensus 146 ~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~ 225 (652)
T TIGR01217 146 LPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHI 225 (652)
T ss_pred cCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999998753 34555555666777777766
Q ss_pred cCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH-HHHHHhhC
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTLI 311 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~ 311 (744)
......... .........|+++...............++|+++|+|||||||.||||+++|++++.. .......+
T Consensus 226 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~ 301 (652)
T TIGR01217 226 PYLGPRETE----APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC 301 (652)
T ss_pred eCCCCcccc----cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc
Confidence 532211000 0000123456776543222122223456689999999999999999999999997643 44444455
Q ss_pred CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
++.++|++++++|+.|.... ..+.+|+.|+++++.+....... +..++..++++++|++..+|+++..+.+...
T Consensus 302 -~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~----~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~ 375 (652)
T TIGR01217 302 -DLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPA----TNVLWDIAERTGATLFGTSAKYVMACRKAGV 375 (652)
T ss_pred -CCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCC----chHHHHHHHHhCCeEEecCHHHHHHHHhcCC
Confidence 88999999999999997542 34578999999998432111100 1223344999999999888877766543100
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC-
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG- 470 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g- 470 (744)
. .....+.++||.+++||+++++++.+++.+.++
T Consensus 376 ~---------------------------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~ 410 (652)
T TIGR01217 376 H---------------------------------------------PARTHDLSALQCVASTGSPLPPDGFRWVYDEIKA 410 (652)
T ss_pred C---------------------------------------------ccccCChhheeEEEeecCCCCHHHHHHHHHHhCC
Confidence 0 000112258999999999999999999988775
Q ss_pred -CceecccChhhhccccccc-CCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc--cccccccCCCc
Q 004568 471 -APIGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPG 546 (744)
Q Consensus 471 -~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~ 546 (744)
..+.+.||+||++...... +......+++|.|.+|++++|+| ++|..+ +|+.|||+++|| +++.|||++++
T Consensus 411 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~----~g~~GEl~v~gp~p~~~~gy~~~~~ 485 (652)
T TIGR01217 411 DVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV----TGEVGELVCTNPMPSMPIRFWNDPD 485 (652)
T ss_pred CceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC----CCCccEEEEecCCCccccceeCCCc
Confidence 4577899999975443322 22223458899999999999999 666643 489999999996 68999999998
Q ss_pred ccc--cccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---
Q 004568 547 KTS--EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--- 621 (744)
Q Consensus 547 ~t~--~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~--- 621 (744)
.+. +.+....+ |||+|||+|++|+||+|+|+||.||+||+ +|+||+|.|||++|.+||+|.+|+|+|.+++.
T Consensus 486 ~t~~~~~~~~~~~--g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge 562 (652)
T TIGR01217 486 GSKYRDAYFDTYP--GVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGY 562 (652)
T ss_pred cchhHHhhhcCCC--CEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCE
Confidence 764 23221123 79999999999999999999999999996 79999999999999999999999999998753
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
.++|||++.++. +. + +.+.++|++ +++ .+|++|+
T Consensus 563 ~~~afVv~~~~~----------~~--------~----~~~~~~l~~-----------------------~~~-~~l~~~~ 596 (652)
T TIGR01217 563 RVVLFVHLAPGA----------TL--------D----DALLDRIKR-----------------------TIR-AGLSPRH 596 (652)
T ss_pred EEEEEEEECCCC----------CC--------C----HHHHHHHHH-----------------------HHH-hhCCCCc
Confidence 599999987632 11 1 223355666 666 6999999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
+|+.|++++++ | +|++|||+|+.|++.+.
T Consensus 597 ~P~~i~~v~~l--P----~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 597 VPDEIIEVPGI--P----HTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred CCCEEEECCCC--C----CCCCccChHHHHHHHHc
Confidence 99999999999 8 99999999999999874
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=601.73 Aligned_cols=522 Identities=21% Similarity=0.235 Sum_probs=394.8
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|++.++++|+++|+++. ++. .......++++||+||.++++++|++|.+.|+++||+|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~-----------~~~--~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~ 72 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP-----------GGR--GADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM 72 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec-----------cCC--CCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 57889999999999999999863 111 00001224479999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECch--hhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK--QLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++. ....+... .....+.++.++...
T Consensus 73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~--- 147 (552)
T PRK09274 73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL--- 147 (552)
T ss_pred eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc---
Confidence 99999999999999999999999999999999999999999999999752 22222111 011223333322110
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
......++++.......+.......++++++|+|||||||.||+|++||+++.+.+......+ ++.++|+
T Consensus 148 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 217 (552)
T PRK09274 148 ---------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEI 217 (552)
T ss_pred ---------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCce
Confidence 001123444432211112222345678999999999999999999999999999988888877 8899999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
.++.+|++|.+++ ..|+++++....... .....+..++..++++++|+++++|++++.|.+.....
T Consensus 218 ~~~~~pl~~~~~~-------~~g~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------ 283 (552)
T PRK09274 218 DLPTFPLFALFGP-------ALGMTSVIPDMDPTR-PATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN------ 283 (552)
T ss_pred eeeccCHHHhhhh-------hhCCeEEecCccccc-ccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc------
Confidence 9999999986543 457777663211000 00011223444499999999999999999987642110
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc--CCceeccc
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--GAPIGQAY 477 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~--g~~i~~~Y 477 (744)
....+++|.+++||+++++++.+++++.+ |+++++.|
T Consensus 284 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y 322 (552)
T PRK09274 284 -----------------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY 322 (552)
T ss_pred -----------------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccc
Confidence 01225899999999999999999999988 57999999
Q ss_pred ChhhhcccccccCCC----------CCCCCccCCCcCccEEEEEecCCCC-----ccCCCCCCCCcEEEEcccccccccc
Q 004568 478 GLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGG-----YKTSDKPMPRGEIVVGGFNVTAGYF 542 (744)
Q Consensus 478 G~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~~v~i~d~~~~~-----~~~~~~~g~~GEl~v~g~~v~~gY~ 542 (744)
|+||++++++..... .....++|+|+|+++++|+|+.++. ....+++|+.|||+|+|++++.|||
T Consensus 323 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~ 402 (552)
T PRK09274 323 GATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYY 402 (552)
T ss_pred cccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCccccccc
Confidence 999998766543221 1122479999999999999843221 1122678999999999999999999
Q ss_pred CCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC-
Q 004568 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN- 621 (744)
Q Consensus 543 ~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~- 621 (744)
++++.|...|..+.+|..||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.
T Consensus 403 ~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~ 481 (552)
T PRK09274 403 NRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGA 481 (552)
T ss_pred CChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCC
Confidence 9999999887533442239999999999999999999999999997 69999999999999999999999999987653
Q ss_pred -eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 622 -YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 622 -~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
.++++|++.++. +.+ .+++.+++++ +++ .++.+
T Consensus 482 ~~~~~~v~~~~~~----------~~~-----------~~~l~~~l~~-----------------------~l~--~~~~~ 515 (552)
T PRK09274 482 QRPVLCVELEPGV----------ACS-----------KSALYQELRA-----------------------LAA--AHPHT 515 (552)
T ss_pred ceEEEEEEccCcc----------ccc-----------hHHHhhhhHH-----------------------HHH--hcCCC
Confidence 588888877642 000 1234455555 554 45677
Q ss_pred cceeEEEEecCCCCCCCCccc--cccccChHHHHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVT--AALKIKREQLKAKFKDDL 739 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t--~~GKi~R~~l~~~~~~~i 739 (744)
+.|+.+++++++ | +| ++|||+|++|++++.+.+
T Consensus 516 ~~~~~~~~~~~l--P----~t~~~~GKi~r~~L~~~~~~~~ 550 (552)
T PRK09274 516 AGIERFLIHPSF--P----VDIRHNAKIFREKLAVWAAKQL 550 (552)
T ss_pred cceeEEeccCCC--C----ccccccccccHHHHHHHHHHhh
Confidence 889999999998 8 88 799999999999987765
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-68 Score=602.86 Aligned_cols=503 Identities=20% Similarity=0.249 Sum_probs=391.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.+.|.++|+++|+++|+++. ++. +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i 71 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVLV 71 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 368999999999999999999753 332 36999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++........+......+. ++..+......
T Consensus 72 ~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 149 (540)
T PRK05857 72 ISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR- 149 (540)
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc-
Confidence 9999999999999999999999999999999999999999999999999865422221111111222 22222111000
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHh----hCCCCCC
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGR 316 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~ 316 (744)
. ..... . ...+.......++++++++|||||||.||||++||+++.++...... .+ ....
T Consensus 150 ---------~---~~~~~-~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~ 213 (540)
T PRK05857 150 ---------E---SEHSL-D--AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVV 213 (540)
T ss_pred ---------c---ccccc-c--ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-cccc
Confidence 0 00000 0 00011123346789999999999999999999999999877654332 12 4567
Q ss_pred CcEEEecCChHHHHHHHHHHHHHHhcceEEe--CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 317 ~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
+++.++.+|++|.+++...+.+++.|+++++ .++..+++. ++++++|+++++|+++..+.+.....
T Consensus 214 ~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~-----------i~~~~it~~~~~P~~~~~l~~~~~~~- 281 (540)
T PRK05857 214 GETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEI-----------LTTNAVATTCLVPTLLSKLVSELKSA- 281 (540)
T ss_pred CceeeecCCccccchHHHHHHHhhcceeEEecCCChhHHHHH-----------HHhcCcceEEeChHHHHHHHhccccC-
Confidence 8899999999999999877888999999877 334444444 99999999999999999887531100
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCcee
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~ 474 (744)
....+++|.+++||++++....+++. .+|++++
T Consensus 282 ----------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~ 314 (540)
T PRK05857 282 ----------------------------------------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTA 314 (540)
T ss_pred ----------------------------------------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeee
Confidence 01125899999999999988776554 5799999
Q ss_pred cccChhhhcccccccCCCC-----CCCCccCCCcCccEEEEEecCCCC-ccC--CCCCCCCcEEEEccccccccccCCCc
Q 004568 475 QAYGLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEGG-YKT--SDKPMPRGEIVVGGFNVTAGYFNNPG 546 (744)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~v~i~d~~~~~-~~~--~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (744)
+.||+||++.......... .+.+++|+|++|++++|+|+ ++. ..+ .++.|+.|||+|+|++++.|||++++
T Consensus 315 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~-~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~ 393 (540)
T PRK05857 315 QVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT-DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPE 393 (540)
T ss_pred cccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECc-cccCccccccCCCCCcceEEEeCcchhhhhhCCcc
Confidence 9999999986543332221 24579999999999999984 433 221 13457899999999999999999999
Q ss_pred ccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eE
Q 004568 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YC 623 (744)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~ 623 (744)
.|.+.| .+ |||+|||+|++|++|++++.||.||+||+ +|++|+|.|||++|..||+|.+|+|++.++.. .+
T Consensus 394 ~t~~~~---~~--g~~~TGDlg~~d~~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~ 467 (540)
T PRK05857 394 RTAEVL---ID--GWVNTGDLLERREDGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALV 467 (540)
T ss_pred chhhhc---CC--CceeccceEEEcCCceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccce
Confidence 999998 56 89999999999999999999999999997 69999999999999999999999999988653 46
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccce
Q 004568 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIP 703 (744)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P 703 (744)
+++|++.+.. +....+++.+.+.+ +++ ..+++|++|
T Consensus 468 ~~~vv~~~~~--------------------~~~~~~~l~~~~~~-----------------------~~~-~~l~~~~~P 503 (540)
T PRK05857 468 GLAVVASAEL--------------------DESAARALKHTIAA-----------------------RFR-RESEPMARP 503 (540)
T ss_pred EEEEEeCCCC--------------------ChhhHHHHHHHHHH-----------------------HHH-hhhccccCC
Confidence 6777665421 01112334455555 555 589999999
Q ss_pred eEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 704 AKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 704 ~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
..+++++++ | +|++||++|++|++.++.+
T Consensus 504 ~~v~~~~~i--P----~t~~GKi~r~~l~~~~~~~ 532 (540)
T PRK05857 504 STIVIVTDI--P----RTQSGKVMRASLAAAATAD 532 (540)
T ss_pred eEEEEhhcC--C----CCCCcceeHHHHHHhhhhc
Confidence 999999999 8 9999999999999988754
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=599.33 Aligned_cols=512 Identities=24% Similarity=0.356 Sum_probs=402.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAA 159 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~ 159 (744)
..|+.++|++.++++|+++|++. +++ .+||+||.++++++|+.|.+ .|+++||+|+
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Va 79 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIA 79 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 35899999999999999999985 343 69999999999999999997 5999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .++.++..+......
T Consensus 80 i~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 158 (562)
T PRK05677 80 VQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLP 158 (562)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEeccccccc
Confidence 9999999999999999999999999999999999999999999999999887665554443322 334444332111000
Q ss_pred --CC--------CccC---CCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH
Q 004568 240 --DS--------GVSG---GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (744)
Q Consensus 240 --~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (744)
.. .... .........+.+.+..............++|+++|+|||||||.||||+++|++++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~ 238 (562)
T PRK05677 159 PLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQ 238 (562)
T ss_pred chhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHH
Confidence 00 0000 0000112344554443332222233456799999999999999999999999999887766
Q ss_pred HHhhC-CCCC-CCcEEEecCChHHHHHHHHH-HHHHHhcceEEe-CCc---ccccccchhhccCccccceEecceEEeec
Q 004568 307 IKTLI-PNPG-RSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY-GST---LTMTDTSSKIKKGTKGDVSVLKPTLMAAV 379 (744)
Q Consensus 307 ~~~~~-~~~~-~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~-~~~---~~~~~~~~~~~~~~~~~i~~~~~T~l~~~ 379 (744)
....+ ..+. ..+++++.+|++|.+++... +..+..|++.++ .++ ..+++. ++++++|+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~ 307 (562)
T PRK05677 239 CRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE-----------LGKWKFSGFVGL 307 (562)
T ss_pred HHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH-----------HHHcCceEEecH
Confidence 55443 1233 34788999999999998654 456777877665 222 223333 999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCH
Q 004568 380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459 (744)
Q Consensus 380 P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 459 (744)
|+++..+.+.... .....+++|.+++||+++++
T Consensus 308 p~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gG~~~~~ 340 (562)
T PRK05677 308 NTLFVALCNNEAF-----------------------------------------------RKLDFSALKLTLSGGMALQL 340 (562)
T ss_pred HHHHHHHHhCccc-----------------------------------------------ccCChhhceEEEEcCccCCH
Confidence 9999887652100 00011479999999999999
Q ss_pred HHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccc
Q 004568 460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (744)
Q Consensus 460 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~ 539 (744)
++.+.+++.+|+++++.||+||++++++........++++|+|+++++++|+| +++.. ++.|+.|||+|+|++++.
T Consensus 341 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~ 416 (562)
T PRK05677 341 ATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNE---LPLGEVGELCVKGPQVMK 416 (562)
T ss_pred HHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCC---CCCCCCeEEEEecCccch
Confidence 99999999889999999999999887766655555668999999999999999 55654 568999999999999999
Q ss_pred cccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCC
Q 004568 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (744)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~ 619 (744)
||+++++.|++.|. .+ |||+|||+|++|++|+++|.||.+|+||+ +|++|+|.|||++|.+||+|.+++|++.++
T Consensus 417 gY~~~~~~t~~~~~--~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~ 491 (562)
T PRK05677 417 GYWQRPEATDEILD--SD--GWLKTGDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPD 491 (562)
T ss_pred hhcCCchhhhhccC--CC--CcccccceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence 99999999999985 45 89999999999999999999999999998 599999999999999999999999999886
Q ss_pred C---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
. ..++++|++.++. +.+ .+++++ +++ .+
T Consensus 492 ~~~g~~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~ 522 (562)
T PRK05677 492 EKSGEAIKVFVVVKPGE----------TLT---------------KEQVME-----------------------HMR-AN 522 (562)
T ss_pred ccCCceEEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHH-Hh
Confidence 5 3578888765421 000 134555 666 58
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
|++|++|..|++++++ | +|++||++|++|++.+..+
T Consensus 523 l~~~~~P~~i~~v~~i--P----~t~sGKi~r~~L~~~~~~~ 558 (562)
T PRK05677 523 LTGYKVPKAVEFRDEL--P----TTNVGKILRRELRDEELKK 558 (562)
T ss_pred hhhccCCcEEEEeccC--C----CCCcccccHHHHHHHHHHh
Confidence 9999999999999999 8 9999999999999877554
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=608.82 Aligned_cols=519 Identities=14% Similarity=0.131 Sum_probs=396.4
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.+.+.++ .+|+++|+++. +. .++.+.+||+||.++++++|+.|+++|+++||+|+++
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~-----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 145 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR-----------GE-------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAY 145 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE-----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3555544432 58999999874 21 1344689999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh---------hhHHHHhhccCCCeeEEEEe
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYF 232 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~ 232 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+...++.++.++.+
T Consensus 146 ~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (655)
T PRK03584 146 LPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVV 225 (655)
T ss_pred cCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999998753 23444444556666666666
Q ss_pred cCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH-HHHHHhhC
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTLI 311 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~ 311 (744)
+...... ..........|+++...............++++++|+|||||||.||||++||++++.. +......+
T Consensus 226 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~ 300 (655)
T PRK03584 226 PYLGPAA-----AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC 300 (655)
T ss_pred ecCCCcc-----cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc
Confidence 5322100 00001123456666542222222234456799999999999999999999999987644 45555556
Q ss_pred CCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
++.++|+++++.++.|.... ..+.+|+.|+++++.+....... +..++..++++++|++.++|+++..+.+...
T Consensus 301 -~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 374 (655)
T PRK03584 301 -DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD----PNVLWDLAAEEGVTVFGTSAKYLDACEKAGL 374 (655)
T ss_pred -CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCC----HHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC
Confidence 88999999999999987543 34577999999988432111000 1223344999999999999999988764210
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc--
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-- 469 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-- 469 (744)
.. ......++||.+++||+++++++.+++.+.+
T Consensus 375 ~~---------------------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~ 409 (655)
T PRK03584 375 VP---------------------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKA 409 (655)
T ss_pred Cc---------------------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCC
Confidence 00 0001125899999999999999999998887
Q ss_pred CCceecccChhhhcccccccC-CCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc--cccccccCCCc
Q 004568 470 GAPIGQAYGLTETCAGSTFSE-WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPG 546 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~--~v~~gY~~~~~ 546 (744)
++.+.+.||+||++..+.... ......+++|.|++|++++|+| ++|.. + +|+.|||+|+|| +++.|||++++
T Consensus 410 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~---~-~g~~GeL~v~gp~p~~~~gy~~~~~ 484 (655)
T PRK03584 410 DVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRP---V-VGEVGELVCTKPFPSMPLGFWNDPD 484 (655)
T ss_pred CceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCC---C-CCCceEEEEccCCCCCcceeeCCCc
Confidence 478999999999865443322 2233568999999999999999 56654 3 688999999996 79999999998
Q ss_pred ccc--cccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---C
Q 004568 547 KTS--EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (744)
Q Consensus 547 ~t~--~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~ 621 (744)
.++ +.+....+ |||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ +
T Consensus 485 ~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~ 561 (655)
T PRK03584 485 GSRYRDAYFDTFP--GVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDV 561 (655)
T ss_pred cchHHHhhhccCC--CEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCE
Confidence 654 22211113 79999999999999999999999999997 6999999999999999999999999998864 3
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
.++|+|++.++. .. + +.+.++|++ +++ .+|++|+
T Consensus 562 ~~~a~vv~~~~~----------~~--------~----~~~~~~l~~-----------------------~~~-~~L~~~~ 595 (655)
T PRK03584 562 RMPLFVVLAEGV----------TL--------D----DALRARIRT-----------------------TIR-TNLSPRH 595 (655)
T ss_pred EEEEEEEECCCC----------CC--------c----HHHHHHHHH-----------------------HHH-hhCCCCc
Confidence 699999987632 00 1 223345666 666 5899999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
+|+.|++++++ | +|++|||+|+.|++.+.
T Consensus 596 ~P~~i~~v~~l--P----~t~sGKi~r~~lr~~~~ 624 (655)
T PRK03584 596 VPDKIIAVPDI--P----RTLSGKKVELPVKKLLH 624 (655)
T ss_pred CCCEEEECCCC--C----CCCCccchHHHHHHHHc
Confidence 99999999999 8 99999999999999874
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=671.70 Aligned_cols=577 Identities=17% Similarity=0.179 Sum_probs=416.2
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCC-CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCccee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG-ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFE 121 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~ 121 (744)
|..+ +.++++....+.+.+.... ....|+. ..+++++|+++++++||++|+++... ++.
T Consensus 204 p~~~---l~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~a~~~pd~~A~~~~~~---------~~~--- 263 (1389)
T TIGR03443 204 PDEP---IGKVSLITPSQKSLLPDPT-----KDLDWSGFRGAIHDIFADNAEKHPDRTCVVETPS---------FLD--- 263 (1389)
T ss_pred cCCc---eecccCCCHHHHhhhhccc-----cccCcCcccCcHHHHHHHHHHhCCCCeEEEeccc---------ccc---
Confidence 5666 7778877666554332110 1112222 36899999999999999999986310 000
Q ss_pred eccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhc
Q 004568 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201 (744)
Q Consensus 122 ~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~ 201 (744)
. ....+.+||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||+++|++++|++|.++.+++.++++++
T Consensus 264 -~-~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~ 341 (1389)
T TIGR03443 264 -P-SSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVA 341 (1389)
T ss_pred -c-cCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhc
Confidence 0 01235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEECchh---hhHHHHhhcc----CCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCC--CCCCCCCCC
Q 004568 202 QVTTLICDSKQ---LKKLSAVSSS----LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPVDPSLP 272 (744)
Q Consensus 202 ~~~~vi~~~~~---~~~~~~~~~~----~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (744)
++++++++... ...+...... ...+..+...+...... .. .. ....+...... .........
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 412 (1389)
T TIGR03443 342 KPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG-----GS---LE-GGETDVLAPYQALKDTPTGVVV 412 (1389)
T ss_pred CCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc-----cc---cc-cccccccccccccccCCCCCcC
Confidence 99999987642 1111111111 01111111111100000 00 00 00000000000 001111234
Q ss_pred CCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCccc
Q 004568 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352 (744)
Q Consensus 273 ~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~ 352 (744)
.++|+++|+|||||||.||||+++|+++++.+.+....+ ++.++|++++++|++|+.++...+.+|+.|+++++.+...
T Consensus 413 ~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~ 491 (1389)
T TIGR03443 413 GPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADD 491 (1389)
T ss_pred CCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhh
Confidence 678999999999999999999999999999998888888 8999999999999999999888899999999999854332
Q ss_pred ccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHH
Q 004568 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (744)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (744)
..+. ..+...++++++|+++++|++++.+.....
T Consensus 492 ~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------------------------- 525 (1389)
T TIGR03443 492 IGTP-----GRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------------------------- 525 (1389)
T ss_pred ccCH-----HHHHHHHHHhCCeEEEeCHHHHHHHHhccc-----------------------------------------
Confidence 2221 123334999999999999999988753210
Q ss_pred HHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhhhcccccccCCCC-----------CCCCccC
Q 004568 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDD-----------PSVGRVG 500 (744)
Q Consensus 433 ~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG 500 (744)
...++||.+++||+++++...+.+.... +++++|.||+||++..++...... ....++|
T Consensus 526 ---------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 596 (1389)
T TIGR03443 526 ---------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAG 596 (1389)
T ss_pred ---------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCC
Confidence 0114899999999999999988877654 789999999999987766533211 1236799
Q ss_pred CCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC------------------------
Q 004568 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE------------------------ 556 (744)
Q Consensus 501 ~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~------------------------ 556 (744)
+|+++++++|+|.++.. ..++.|+.|||+|+||+++.||+|+|+.|+++|..+.
T Consensus 597 ~~~~~~~~~ivd~~~~~--~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1389)
T TIGR03443 597 KGMKNVQLLVVNRNDRT--QTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLG 674 (1389)
T ss_pred CccCCCEEEEECCccCC--CcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCC
Confidence 99999999999843322 1267899999999999999999999999999996321
Q ss_pred CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHH
Q 004568 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (744)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~ 633 (744)
++.+||+|||+|++++||+|+|+||.||+||+ +|+||+|.|||++|.+||.|.+++|++.++. ..++|+|++..+.
T Consensus 675 ~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~ 753 (1389)
T TIGR03443 675 PRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKS 753 (1389)
T ss_pred CccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcc
Confidence 12489999999999999999999999999997 6999999999999999999999999876544 4699999987321
Q ss_pred --HHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecC
Q 004568 634 --LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE 711 (744)
Q Consensus 634 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~ 711 (744)
...+....... .+....+..........++|++ +++ .+||.||+|..++++++
T Consensus 754 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-----------------------~l~-~~Lp~y~~P~~~~~~~~ 808 (1389)
T TIGR03443 754 DELEEFKSEVDDE-ESSDPVVKGLIKYRKLIKDIRE-----------------------YLK-KKLPSYAIPTVIVPLKK 808 (1389)
T ss_pred ccccccccccccc-cccccchhhhhhhhhhHHHHHH-----------------------HHH-hhCCcccCCceEEEccc
Confidence 10000000000 0000000011111222345566 776 69999999999999999
Q ss_pred CCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 712 PWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 712 ~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+ | +|++|||+|++|++.+.++++
T Consensus 809 l--P----~t~~GKidr~~L~~~~~~~~~ 831 (1389)
T TIGR03443 809 L--P----LNPNGKVDKPALPFPDTAQLA 831 (1389)
T ss_pred C--C----CCCCccccHhhcCCCchhhhh
Confidence 8 8 999999999999765554443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=600.09 Aligned_cols=515 Identities=23% Similarity=0.295 Sum_probs=416.3
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAA 159 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~gd~V~ 159 (744)
..|+.++|.++++++|+++|+++ +++ .+||+||.++++++|..|.+. |+++|++|+
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~ 65 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVL 65 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 36899999999999999999986 333 699999999999999999999 999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...+.+....... .++.++.........
T Consensus 66 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 144 (546)
T PRK08314 66 LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLP 144 (546)
T ss_pred EECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcc
Confidence 9999999999999999999999999999999999999999999999999988777666544333 234444332110000
Q ss_pred ---CCCcc---------CCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH
Q 004568 240 ---DSGVS---------GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307 (744)
Q Consensus 240 ---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 307 (744)
..... ....+..+..|++...... ........++++++|+|||||||.||+|++||++++.++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~ 222 (546)
T PRK08314 145 AEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGS 222 (546)
T ss_pred cccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 00000 0001123345666554322 112344567899999999999999999999999999998888
Q ss_pred HhhCCCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHH
Q 004568 308 KTLIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF 383 (744)
Q Consensus 308 ~~~~~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~ 383 (744)
...+ .+..+|++++.+|++|.+|+... +.++..|+++++.+ +..+.. .++++++|++.++|+++
T Consensus 223 ~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------~i~~~~~t~~~~~p~~~ 290 (546)
T PRK08314 223 VLWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAAR-----------LIERYRVTHWTNIPTMV 290 (546)
T ss_pred HHhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHH-----------HHHHhcCceecccHHHH
Confidence 7777 88999999999999999998654 57799999999943 333333 39999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHH
Q 004568 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (744)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~ 463 (744)
..+...... .....+++|.+++||+++++++.+
T Consensus 291 ~~ll~~~~~-----------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~ 323 (546)
T PRK08314 291 VDFLASPGL-----------------------------------------------AERDLSSLRYIGGGGAAMPEAVAE 323 (546)
T ss_pred HHHHhCCCc-----------------------------------------------cccCchhhheeeeccccCCHHHHH
Confidence 887642100 001124789999999999999999
Q ss_pred HHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 464 ~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
++.+.+++++++.||+||++..+..........+++|+|++|++++|+|++++.. ++.|+.|||+|+|++++.||++
T Consensus 324 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~ 400 (546)
T PRK08314 324 RLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEE---LPPGEVGEIVVHGPQVFKGYWN 400 (546)
T ss_pred HHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcC---CCCCCceEEEEECCchhccccC
Confidence 9999889999999999999887766555445568999999999999999666665 4588899999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~--- 620 (744)
+++.|.+.|.. .+|.+||+|||+|+++++|++++.||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++.
T Consensus 401 ~~~~t~~~f~~-~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~ 478 (546)
T PRK08314 401 RPEATAEAFIE-IDGKRFFRTGDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRG 478 (546)
T ss_pred ChhHhhhhhhh-cCCCceEecCCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccC
Confidence 99999988852 134479999999999999999999999999997 5999999999999999999999999998765
Q ss_pred CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
+.++|+|+++++.. ... ..+++++ +|+ .+|+.|
T Consensus 479 ~~~~a~v~~~~~~~--------~~~---------------~~~~l~~-----------------------~~~-~~l~~~ 511 (546)
T PRK08314 479 ETVKAVVVLRPEAR--------GKT---------------TEEEIIA-----------------------WAR-EHMAAY 511 (546)
T ss_pred ceeEEEEEECCCCC--------CCC---------------CHHHHHH-----------------------HHH-HhcccC
Confidence 35899999876420 000 0145666 777 699999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
++|+.+++++++ | +|.+||++|++|++.....
T Consensus 512 ~~P~~~~~v~~i--P----~t~~GKv~r~~L~~~~~~~ 543 (546)
T PRK08314 512 KYPRIVEFVDSL--P----KSGSGKILWRQLQEQEKAR 543 (546)
T ss_pred CCCcEEEEecCC--C----CCCccceeHHHHHHHHhhh
Confidence 999999999999 8 9999999999998876553
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=597.17 Aligned_cols=487 Identities=19% Similarity=0.220 Sum_probs=397.7
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.++|.++++++||++|++. ++. .+||+||.++++++|++|.++|+++|++|+++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~ 99 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM 99 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5899999999999999999985 222 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.......+....++......
T Consensus 100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 174 (537)
T PRK13382 100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED----- 174 (537)
T ss_pred ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-----
Confidence 999999999999999999999999999999999999999999999999887666655443333333333332210
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
....++++....... .....+++.++++|||||||.||||+++|++++.........+ .+..+|+++
T Consensus 175 ---------~~~~~~~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l 241 (537)
T PRK13382 175 ---------HDLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTV 241 (537)
T ss_pred ---------ccccHHHHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEE
Confidence 012344443321111 1123468899999999999999999999999988888777776 788899999
Q ss_pred ecCChHHHHHHHHHHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 322 ~~~Pl~h~~g~~~~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
..+|++|.+++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+.+......
T Consensus 242 ~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~---- 306 (537)
T PRK13382 242 IVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVR---- 306 (537)
T ss_pred EecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhc----
Confidence 99999999999777888999999988 445555554 999999999999999998865211000
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccC
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG 478 (744)
...+++++|.+++||+++++++.+.+.+.+|.++++.||
T Consensus 307 -----------------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG 345 (537)
T PRK13382 307 -----------------------------------------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYN 345 (537)
T ss_pred -----------------------------------------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEeccc
Confidence 001124799999999999999999999989999999999
Q ss_pred hhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCC
Q 004568 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (744)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (744)
+||++.+++..... ....+++|+|+++++++|+| +++.. ++.|+.|||+++|++++.||+ ++.+.. | .+
T Consensus 346 ~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~---~~ 415 (537)
T PRK13382 346 ATEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFRE---VPTGEVGTIFVRNDTQFDGYT--SGSTKD-F---HD 415 (537)
T ss_pred ccccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCC---CCCCCeeEEEEEcCCcccCcc--ccchhh-c---cC
Confidence 99998776644322 23457999999999999999 55654 568899999999999999998 555543 4 45
Q ss_pred cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHH
Q 004568 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKAL 634 (744)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~ 634 (744)
|||+|||++++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++|+|++.++.
T Consensus 416 --g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~- 491 (537)
T PRK13382 416 --GFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGA- 491 (537)
T ss_pred --CCEeeCceEEEeCCCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCC-
Confidence 89999999999999999999999999996 69999999999999999999999999988653 489999886532
Q ss_pred HHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCC
Q 004568 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWT 714 (744)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~ 714 (744)
.. ..++|++ +++ .+|+.|++|+.+++++++
T Consensus 492 ---------~~---------------~~~~l~~-----------------------~l~-~~l~~~~~P~~i~~v~~l-- 521 (537)
T PRK13382 492 ---------SA---------------TPETLKQ-----------------------HVR-DNLANYKVPRDIVVLDEL-- 521 (537)
T ss_pred ---------CC---------------CHHHHHH-----------------------HHH-HhccCCCCCcEEEEeccC--
Confidence 00 0134555 666 589999999999999998
Q ss_pred CCCCccccccccChHHHHH
Q 004568 715 PEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 715 p~~~~~t~~GKi~R~~l~~ 733 (744)
| +|++||++|++|++
T Consensus 522 P----~t~~gK~~r~~L~~ 536 (537)
T PRK13382 522 P----RGATGKILRRELQA 536 (537)
T ss_pred C----CCCCCCCcHHhhCC
Confidence 8 99999999999864
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=616.49 Aligned_cols=479 Identities=19% Similarity=0.239 Sum_probs=384.9
Q ss_pred CCHHHHHHHHHHh--CCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 82 STMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 82 ~tl~~~~~~~a~~--~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
.|+.++|.+++++ +||++|++. +. .+||+||.++++++|+.|.+.|+++|++|+
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~-------------~~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~ 59 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYA-------------AD-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVL 59 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEe-------------cC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3789999999886 799999974 22 599999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+... .++
T Consensus 60 i~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~--------- 122 (705)
T PRK06060 60 LCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVA--------- 122 (705)
T ss_pred EECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccc---------
Confidence 999999999999999999999999999999999999999999999999987654332110 000
Q ss_pred CCCccCCCCCceEeeHHHHHHcC-CCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH-hhCCCCCCC
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLG-KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~ 317 (744)
...++.... ...+.......++++++++|||||||.||||+++|+++.+.+.... ..+ .+.++
T Consensus 123 --------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~ 187 (705)
T PRK06060 123 --------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPE 187 (705)
T ss_pred --------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCc
Confidence 001111000 0011111234578999999999999999999999999998877664 345 78899
Q ss_pred cEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 318 DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 318 d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
|++++.+|++|.+++.. .+.+|..|+++++.+...- ...+...+.++++|+++++|+++..+.+....
T Consensus 188 d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~-------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---- 256 (705)
T PRK06060 188 DTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVT-------PEAAAILSARFGPSVLYGVPNFFARVIDSCSP---- 256 (705)
T ss_pred ceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCC-------HHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----
Confidence 99999999999988754 5677999999988432110 01112238899999999999999888653100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceec
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~ 475 (744)
...++||.+++||+++++++.+.+.+.+ +++++|
T Consensus 257 ---------------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~ 291 (705)
T PRK06060 257 ---------------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILD 291 (705)
T ss_pred ---------------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEe
Confidence 0114899999999999999999988887 589999
Q ss_pred ccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccC
Q 004568 476 AYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (744)
.||+||++..+........+.+++|+|+++++++|+| +++.. +++|+.|||+|+|++++.|||++++.+..
T Consensus 292 ~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~---~~~g~~GEl~i~g~~v~~GY~~~~~~~~~----- 362 (705)
T PRK06060 292 GIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTT---AGPGVEGDLWVRGPAIAKGYWNRPDSPVA----- 362 (705)
T ss_pred eeeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEccchhhhhhhCCCccccc-----
Confidence 9999999876554444444568999999999999999 55554 56899999999999999999999986532
Q ss_pred CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHH
Q 004568 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (744)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~ 632 (744)
.+ |||+|||+|++++||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++. ..++|+|++.++
T Consensus 363 ~~--~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 439 (705)
T PRK06060 363 NE--GWLDTRDRVCIDSDGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSG 439 (705)
T ss_pred CC--CcEECCeeEEECCCceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccc
Confidence 34 89999999999999999999999999998 5999999999999999999999999998765 368999987653
Q ss_pred HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCC
Q 004568 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEP 712 (744)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~ 712 (744)
. .. +. ...+++++ +++ .+||.|++|..|++++++
T Consensus 440 ~----------~~--------~~----~~~~~i~~-----------------------~l~-~~L~~~~~P~~i~~v~~i 473 (705)
T PRK06060 440 A----------TI--------DG----SVMRDLHR-----------------------GLL-NRLSAFKVPHRFAVVDRL 473 (705)
T ss_pred c----------Cc--------Ch----HHHHHHHH-----------------------HHH-HhCCCCcCCcEEEEeecC
Confidence 2 00 01 11234555 666 589999999999999999
Q ss_pred CCCCCCccccccccChHHHHHHHH
Q 004568 713 WTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 713 ~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
| +|++||++|++|++.+.
T Consensus 474 --P----~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 474 --P----RTPNGKLVRGALRKQSP 491 (705)
T ss_pred --C----CCcchhhHHHHHHhhcc
Confidence 8 99999999999998763
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=592.42 Aligned_cols=506 Identities=24% Similarity=0.305 Sum_probs=406.9
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004568 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (744)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~g 155 (744)
..++...|+.+++.++++++|+++|+++.+ ++ +++||+||.++++++|+.|.+.|+++|
T Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~-----------~~~ty~el~~~~~~la~~L~~~g~~~g 75 (537)
T PLN02246 17 IYIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TG-----------RVYTYADVELLSRRVAAGLHKLGIRQG 75 (537)
T ss_pred CCCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CC-----------ceeeHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344666799999999999999999998521 12 379999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCC
Q 004568 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (744)
Q Consensus 156 d~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (744)
|+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++|+++.....+...... +.+ .++.++..
T Consensus 76 d~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~ 153 (537)
T PLN02246 76 DVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDP 153 (537)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999998877666554321 122 34443322
Q ss_pred CCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHh----hC
Q 004568 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LI 311 (744)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~ 311 (744)
. .....+.++..... ...+.....++++++++|||||||.||||+++|++++..+..... .+
T Consensus 154 ~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~ 219 (537)
T PLN02246 154 P-------------EGCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 219 (537)
T ss_pred C-------------CCceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc
Confidence 1 11234455443221 112223456889999999999999999999999999988765433 34
Q ss_pred CCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
.+.++|++++.+|++|.+++... +.++..|+++++.+... ...++..++++++|++.++|+++..|.+..
T Consensus 220 -~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~ 290 (537)
T PLN02246 220 -YFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFE--------IGALLELIQRHKVTIAPFVPPIVLAIAKSP 290 (537)
T ss_pred -CCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCC--------HHHHHHHHHHhCceEEEcchHHHHHHhcCc
Confidence 68899999999999999998664 56789999999843321 112233399999999999999998876421
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~- 469 (744)
.. .....+++|.+++||+++++++.+.+.+.+
T Consensus 291 ~~-----------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~ 323 (537)
T PLN02246 291 VV-----------------------------------------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLP 323 (537)
T ss_pred cc-----------------------------------------------cccCccceeEEEEecCcCCHHHHHHHHHHcC
Confidence 00 001124899999999999999999999887
Q ss_pred CCceecccChhhhcccccccCC-----CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCC
Q 004568 470 GAPIGQAYGLTETCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (744)
++.+++.||+||++.+++.... .....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.||+++
T Consensus 324 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~~ 400 (537)
T PLN02246 324 NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGAS---LPRNQPGEICIRGPQIMKGYLND 400 (537)
T ss_pred CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCc---CCCCCceEEEEECCchhccccCC
Confidence 7889999999999876543321 123457899999999999999656654 56899999999999999999999
Q ss_pred CcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---C
Q 004568 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (744)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~ 621 (744)
++.+.+.|. .+ +||+|||+|+++++|+++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. .
T Consensus 401 ~~~~~~~~~--~~--~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 475 (537)
T PLN02246 401 PEATANTID--KD--GWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGE 475 (537)
T ss_pred chhhhhccc--CC--CCeeecceEEEeCCCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCc
Confidence 999998885 45 89999999999999999999999999997 6999999999999999999999999998755 3
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
.++++|++.++. ... .++|++ +++ .+|+.|+
T Consensus 476 ~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~l~-~~l~~~~ 506 (537)
T PLN02246 476 VPVAFVVRSNGS----------EIT---------------EDEIKQ-----------------------FVA-KQVVFYK 506 (537)
T ss_pred eeEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHH-hhCcCcc
Confidence 588888876532 000 134555 665 5899999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|++|++++++ | +|++||++|++|++++.+
T Consensus 507 ~p~~i~~~~~~--P----~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 507 RIHKVFFVDSI--P----KAPSGKILRKDLRAKLAA 536 (537)
T ss_pred ccceEEEeccC--C----CCCcchhhHHHHHHHHhc
Confidence 99999999998 8 999999999999998753
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=597.95 Aligned_cols=498 Identities=27% Similarity=0.346 Sum_probs=392.5
Q ss_pred HHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEc
Q 004568 84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILA 162 (744)
Q Consensus 84 l~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~ 162 (744)
+..+|.+ +++|+++|+++.. .+ ..+||+||.++++++|++|.+ .|+++||+|++++
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~ 99 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL 99 (560)
T ss_pred HHHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence 3445554 6799999998521 11 258999999999999999999 9999999999999
Q ss_pred CCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCC
Q 004568 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (744)
Q Consensus 163 ~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (744)
+|++++++++|||+++|++++|++|.++.+++.++++++++++++++.+..+.+... ... ++.++......
T Consensus 100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~--- 170 (560)
T PLN02574 100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD--- 170 (560)
T ss_pred CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc---
Confidence 999999999999999999999999999999999999999999999998766555432 111 22221110000
Q ss_pred ccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhh----CCCCCCCc
Q 004568 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL----IPNPGRSD 318 (744)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~d 318 (744)
. .......+.++...... ........++++++|+|||||||.||||++||+++++.+..+... +.....++
T Consensus 171 --~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (560)
T PLN02574 171 --S--KRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN 245 (560)
T ss_pred --c--CccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCc
Confidence 0 00112345554433221 112234467899999999999999999999999999887765432 21234578
Q ss_pred EEEecCChHHHHHHHHH-HHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 319 VYLAYLPLAHVLELAAE-SIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 319 ~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
+++..+|++|.+++... +.++..|+++++. ++..+++. ++++++|++.++|+++..+.+....
T Consensus 246 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~-- 312 (560)
T PLN02574 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKV-----------IDRFKVTHFPVVPPILMALTKKAKG-- 312 (560)
T ss_pred EEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHH-----------HHHcCCeEEecCCHHHHHHHhCccc--
Confidence 99999999999998765 4567889998883 44444444 9999999999999999998753110
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCce
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPI 473 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i 473 (744)
......+++|.+++||+++++++.+.+.+.+ ++++
T Consensus 313 --------------------------------------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v 348 (560)
T PLN02574 313 --------------------------------------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDF 348 (560)
T ss_pred --------------------------------------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcE
Confidence 0001125899999999999999998888777 7899
Q ss_pred ecccChhhhcccccccCC--CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccc
Q 004568 474 GQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (744)
++.||+||++.+++.... .....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.|||++++.|.+.
T Consensus 349 ~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~---~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~ 425 (560)
T PLN02574 349 IQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCL---LPPGNCGELWIQGPGVMKGYLNNPKATQST 425 (560)
T ss_pred EecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcC---CCCCCCeEEEEECcchhhhhcCChhHhhhh
Confidence 999999999876543222 223568999999999999999777765 568999999999999999999999999998
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv 628 (744)
|. .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++. +.++|+|+
T Consensus 426 ~~--~~--g~~~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~ 500 (560)
T PLN02574 426 ID--KD--GWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVV 500 (560)
T ss_pred cc--CC--CCcccceEEEEECCCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEE
Confidence 85 56 89999999999999999999999999997 5999999999999999999999999998765 34889998
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEE
Q 004568 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKL 708 (744)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~ 708 (744)
++++. ..+ .++|.+ +++ ++|+.|++|+.+++
T Consensus 501 ~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~v~~ 531 (560)
T PLN02574 501 RRQGS----------TLS---------------QEAVIN-----------------------YVA-KQVAPYKKVRKVVF 531 (560)
T ss_pred eCCCC----------CCC---------------HHHHHH-----------------------HHH-HhccCcccCcEEEE
Confidence 76531 000 134555 666 58999999999999
Q ss_pred ecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 709 MPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 709 ~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
++++ | +|++||++|+.|++.+.+.
T Consensus 532 v~~i--P----~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 532 VQSI--P----KSPAGKILRRELKRSLTNS 555 (560)
T ss_pred eecc--C----CCCcchhhHHHHHHHHhhc
Confidence 9999 8 9999999999999988653
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-69 Score=714.53 Aligned_cols=536 Identities=21% Similarity=0.271 Sum_probs=428.5
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +.+++++...+++.++..++ .+..+++...++.++|+++++++|+++|+++ ++.
T Consensus 1541 p~~~---~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~------------~~~---- 1598 (3956)
T PRK12467 1541 PERR---LGELDLLDEAERRQILEGWN---ATHTGYPLARLVHQLIEDQAAATPEAVALVF------------GEQ---- 1598 (3956)
T ss_pred ccCc---eeeccccchHHhhhhHHhhc---CCccCCCccccHHHHHHHHHHhCCCCeEEEe------------CCc----
Confidence 6666 88899999888888776555 2334445567999999999999999999986 332
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||+++++++|+.|.++|+++|++|+++++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 1599 -------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~ 1671 (3956)
T PRK12467 1599 -------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSG 1671 (3956)
T ss_pred -------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
+++++++......+.. ....+ ++.++... ++... ...........++++|||+|
T Consensus 1672 ~~~~l~~~~~~~~~~~----~~~~~-~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~ayiiy 1725 (3956)
T PRK12467 1672 IELLLTQSHLQARLPL----PDGLR-SLVLDQED--------------------DWLEG-YSDSNPAVNLAPQNLAYVIY 1725 (3956)
T ss_pred CCEEEeChhhhhhCcc----ccCCc-EEEecccc--------------------chhcc-CCCCCCCCCCCCcCcEEEEE
Confidence 9999998765433211 11111 22222110 00000 11111223456899999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++++.+.+....+ ++.++|++++++|++|+++++..+.+|..|+++++.++....+. .
T Consensus 1726 TSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~-----~ 1799 (3956)
T PRK12467 1726 TSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDP-----E 1799 (3956)
T ss_pred CCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCH-----H
Confidence 99999999999999999999999988888 89999999999999999999888999999999999554322221 2
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...|+++++|++.++|++++.|.+.... ..
T Consensus 1800 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------------------------~~ 1831 (3956)
T PRK12467 1800 QLIQLIERQQVTTLHFVPSMLQQLLQMDEQ------------------------------------------------VE 1831 (3956)
T ss_pred HHHHHHHHcCCeEEECCHHHHHHHHhhccc------------------------------------------------cc
Confidence 233349999999999999999988753100 00
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhhhcccccccCCC-----CCCCCccCCCcCccEEEEEecCCC
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEG 516 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~v~i~d~~~~ 516 (744)
..++||.+++|||++++++.+.+.+.+ +..++|.||+||++..++..... .....++|+|++|++++|+| +++
T Consensus 1832 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~ 1910 (3956)
T PRK12467 1832 HPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASL 1910 (3956)
T ss_pred cCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCC
Confidence 124899999999999999988877665 57899999999999877654322 12346899999999999998 555
Q ss_pred CccCCCCCCCCcEEEEccccccccccCCCcccccccccCCC---cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeee
Q 004568 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER---GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (744)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~---g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~ 593 (744)
.. ++.|..|||+|+|+++++||+|+|+.|+++|..++. |.+||+|||+|++++||.|+|+||+||+||++ |++
T Consensus 1911 ~~---vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~-G~r 1986 (3956)
T PRK12467 1911 NP---VPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIR-GFR 1986 (3956)
T ss_pred CC---CCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeC-eEE
Confidence 54 678999999999999999999999999999975432 45799999999999999999999999999985 999
Q ss_pred eccHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhcccc
Q 004568 594 ISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTL 671 (744)
Q Consensus 594 V~p~eIE~~l~~~p~V~~a~V~g~~~--~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 671 (744)
|+|.|||++|.+||+|.+|+|++.++ ...++|+|++..+... . ..+......++|++
T Consensus 1987 Iel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~--------~---------~~~~~~~~~~~l~~---- 2045 (3956)
T PRK12467 1987 IELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLV--------D---------DDEAQVALRAILKN---- 2045 (3956)
T ss_pred echHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccc--------c---------ccccccccHHHHHH----
Confidence 99999999999999999999998763 3469999998654210 0 00001112345666
Q ss_pred ccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 672 VSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
+++ .+||.||+|..+++++++ | +|++|||+|++|.+.+...+
T Consensus 2046 -------------------~l~-~~Lp~ymvP~~~~~l~~l--P----~t~~GKidr~~L~~~~~~~~ 2087 (3956)
T PRK12467 2046 -------------------HLK-ASLPEYMVPAHLVFLARM--P----LTPNGKLDRKALPAPDASEL 2087 (3956)
T ss_pred -------------------HHH-hhCchhhCchhhhhhhcC--C----CCCCCCcchhhCCCCccccc
Confidence 666 689999999999999998 8 99999999999977554433
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=606.34 Aligned_cols=514 Identities=19% Similarity=0.228 Sum_probs=388.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...|+.++|+++++++|+++|+++.+.. ++. .+.++.+||+||.++++++|++|.+. +++||+|
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V 82 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV 82 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence 34468999999999999999999864210 001 12346799999999999999999987 8999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEc-CCCCC--HHHHHHHHHhcCceEEEECchhhhHHHHhhccCCC--eeEEEEec
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIYFE 233 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~ii~~~ 233 (744)
+++++|+++|++++|||+++|++++|+ ++..+ .+++.+++++++++++|++++..+.+.......+. ...++.++
T Consensus 83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (631)
T PRK07769 83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD 162 (631)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence 999999999999999999999999999 55554 68899999999999999998776655544332221 12233222
Q ss_pred CCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (744)
.... .. ..........++++++|+|||||||.||||++||+++.+.+......+ +
T Consensus 163 ~~~~--------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~ 217 (631)
T PRK07769 163 AVPD--------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-E 217 (631)
T ss_pred cccc--------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-C
Confidence 1000 00 000111234678999999999999999999999999999888877777 8
Q ss_pred CCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecc---eEEeechHHHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---TLMAAVPAIFDRVREGV 390 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~---T~l~~~P~~~~~l~~~~ 390 (744)
+.++|++++++|++|.+|+...+.+++.|+++++.++..+... +..++..+.++++ |++.++|+++..+....
T Consensus 218 ~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~ 293 (631)
T PRK07769 218 GQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRR----PGRWIRELARKPGGTGGTFSAAPNFAFEHAAAR 293 (631)
T ss_pred CCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhC----HHHHHHHHHhhccccCceEeeCCchHHHHHHhh
Confidence 8899999999999999999887778888999988554322111 1112223777765 78999999887665310
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM- 469 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~- 469 (744)
. ..... ....+.+++|.+++||+++++++.+.+.+.+
T Consensus 294 ~--~~~~~----------------------------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 331 (631)
T PRK07769 294 G--LPKDG----------------------------------------EPPLDLSNVKGLLNGSEPVSPASMRKFNEAFA 331 (631)
T ss_pred c--cchhc----------------------------------------ccCcchhheeeEEeccCCCCHHHHHHHHHHHh
Confidence 0 00000 0001225899999999999999999988876
Q ss_pred --CC---ceecccChhhhcccccccCCCCC---------------------------CCCccCCCcCccEEEEEecCCCC
Q 004568 470 --GA---PIGQAYGLTETCAGSTFSEWDDP---------------------------SVGRVGPPVPCCYIKLVSWDEGG 517 (744)
Q Consensus 470 --g~---~i~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~vG~p~~~~~v~i~d~~~~~ 517 (744)
|+ .++++||+||++..++....... ..+++|+|+++++++|+|.+++.
T Consensus 332 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~ 411 (631)
T PRK07769 332 PYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETAS 411 (631)
T ss_pred hcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCc
Confidence 33 59999999999876654432210 12589999999999999966665
Q ss_pred ccCCCCCCCCcEEEEccccccccccCCCcccccccccC-------------CCcceeEeeCcEEEEcCCCeEEEEecCCC
Q 004568 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-------------ERGMCWFYTGDIGQVYPDGCLEIIDRKKD 584 (744)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-------------~~g~gw~~TGDlg~~d~dG~l~i~GR~~d 584 (744)
. ++.|+.|||+|+||+++.|||++++.|++.|... .++.|||+|||+|+++ ||+|+|+||.||
T Consensus 412 ~---~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d 487 (631)
T PRK07769 412 E---LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKD 487 (631)
T ss_pred C---CCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEccccc
Confidence 4 5689999999999999999999999999998520 0123899999999995 999999999999
Q ss_pred eEEcCCeeeeccHHHHHHHhc-CcCcce--EEEEecCC-------------------C---CeEEEEEEcCHHHHHHHHH
Q 004568 585 IVKLQHGEYISLGKVEAALIS-SDYVDN--IMIHADPF-------------------H---NYCVALVVPSHKALEKWAH 639 (744)
Q Consensus 585 ~Iki~~G~~V~p~eIE~~l~~-~p~V~~--a~V~g~~~-------------------~---~~~~A~vv~~~~~~~~~~~ 639 (744)
+||+ +|+||+|.|||++|.+ ||.|.+ |+|++.++ + +.++|+|++.++..
T Consensus 488 ~Ik~-~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~----- 561 (631)
T PRK07769 488 LVII-DGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAH----- 561 (631)
T ss_pred EEEE-CCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccc-----
Confidence 9997 6999999999999986 899998 99999887 2 24888888765310
Q ss_pred HhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCC-cc-ceeEEEEec--CCCCC
Q 004568 640 EASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDK-FE-IPAKIKLMP--EPWTP 715 (744)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~-~P~~i~~~~--~~~~p 715 (744)
..+ .++|.+ +++ ++|+. |+ .|+.+++++ ++ |
T Consensus 562 ----~~~---------------~~~l~~-----------------------~~~-~~l~~~~~~~p~~~~~v~~~~l--P 596 (631)
T PRK07769 562 ----KLD---------------PQPIAD-----------------------DIR-AAIAVRHGVTVRDVLLVPAGSI--P 596 (631)
T ss_pred ----ccc---------------HHHHHH-----------------------HHH-HHHHHHcCCCccEEEEECCCcc--c
Confidence 000 134444 555 45664 56 488899987 46 8
Q ss_pred CCCccccccccChHHHHHHHHH
Q 004568 716 EAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 716 ~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|++|||+|++|++.|.+
T Consensus 597 ----~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 597 ----RTSSGKIARRACRAAYLD 614 (631)
T ss_pred ----cCCCcHHHHHHHHHHHHc
Confidence 999999999999998864
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-67 Score=593.17 Aligned_cols=504 Identities=24% Similarity=0.297 Sum_probs=394.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCE
Q 004568 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR 157 (744)
Q Consensus 78 ~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~ 157 (744)
-++..|+.++|+++++++|+++|+++. ++. +.+||+||.++++++|+.|.+.|+++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~ 70 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT-----------ADR----------IAISYRDLARLVDDLAGQLTRSGLLPGDR 70 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec-----------CCC----------CcccHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 356689999999999999999999863 221 36999999999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCC
Q 004568 158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237 (744)
Q Consensus 158 V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 237 (744)
|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++............ ......+.+.....
T Consensus 71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 148 (534)
T PRK05852 71 VALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGDSG 148 (534)
T ss_pred EEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999998653321111000 00111111111100
Q ss_pred CcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCC
Q 004568 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317 (744)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 317 (744)
.. . ......+.... .............+++++++|||||||.||||+++|+++...+......+ .+..+
T Consensus 149 ~~----~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~ 217 (534)
T PRK05852 149 PS----G----GTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPR 217 (534)
T ss_pred cc----c----ccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCc
Confidence 00 0 00000000000 00000011122357889999999999999999999999999998888887 88999
Q ss_pred cEEEecCChHHHHHHHHH-HHHHHhcceEEeCC-----cccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 318 DVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 318 d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~-----~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
|++++.+|++|.+++... +.++..|+++++.. +..+++. ++++++|+++++|+++..+.+...
T Consensus 218 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 286 (534)
T PRK05852 218 DATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD-----------IKAVGATWYTAVPTIHQILLERAA 286 (534)
T ss_pred ceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHH-----------HHHcCCcEEEcChHHHHHHHhhcc
Confidence 999999999999998764 55688888887733 3333333 999999999999999999876421
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
.... ....+++|.+++||+++++++.+.+.+.+++
T Consensus 287 ~~~~---------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~ 321 (534)
T PRK05852 287 TEPS---------------------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAA 321 (534)
T ss_pred cccc---------------------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCC
Confidence 1000 0012589999999999999999999999999
Q ss_pred ceecccChhhhcccccccCCCC--------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 472 PIGQAYGLTETCAGSTFSEWDD--------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 472 ~i~~~YG~TE~~~~~~~~~~~~--------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
++++.||+||++..++...... ...+.+|+ .+|++++++| ++++. +++|+.|||+|+|+.++.|||+
T Consensus 322 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~v~~gY~~ 396 (534)
T PRK05852 322 PVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLP---LPAGAVGEVWLRGTTVVRGYLG 396 (534)
T ss_pred ChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCC---CCCCCceEEEEecCcccchhcC
Confidence 9999999999988766543211 12234444 6999999999 55654 5689999999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC--
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN-- 621 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~-- 621 (744)
+++.|.+.| .+ |||+|||+|++|+||++++.||.+|+||+ +|.+|+|.+||++|.+||+|.+|+|++.++..
T Consensus 397 ~~~~t~~~~---~~--g~~~TGD~~~~d~dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g 470 (534)
T PRK05852 397 DPTITAANF---TD--GWLRTGDLGSLSAAGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYG 470 (534)
T ss_pred Ccccchhhh---cC--CCcccCceEEEeCCCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcC
Confidence 999999998 66 89999999999999999999999999996 79999999999999999999999999998653
Q ss_pred -eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 622 -YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 622 -~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
.++++|++.+.. ..+ . ++|.+ +++ .+|+.|
T Consensus 471 ~~~~~~vv~~~~~----------~~~-----------~----~~i~~-----------------------~~~-~~l~~~ 501 (534)
T PRK05852 471 EAVAAVIVPRESA----------PPT-----------A----EELVQ-----------------------FCR-ERLAAF 501 (534)
T ss_pred ceEEEEEEECCCC----------CCC-----------H----HHHHH-----------------------HHH-Hhcccc
Confidence 588888875431 000 1 34555 666 589999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
++|+.|++++++ | +|++||++|++|+++|.+
T Consensus 502 ~~P~~i~~v~~i--P----~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 502 EIPASFQEASGL--P----HTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred cCCeEEEEhhhc--C----CCCCccccHHHHHHHhcc
Confidence 999999999999 8 999999999999999865
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-67 Score=610.66 Aligned_cols=489 Identities=19% Similarity=0.248 Sum_probs=380.9
Q ss_pred CCCCHHHHHHHHHHhCCC-CcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
...|+.++|.++++++|+ ++|+.. .+ ++++||+||.++++++|+.|.+. +++||+|
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~------------~~----------~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V 258 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIED------------VN----------FTPDSYRKLLKKTLFVGRILEKY-SVEGERI 258 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEc------------CC----------CCcccHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence 457899999999999998 577752 11 13699999999999999999987 5999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHH--HhhccCCCeeEEEEecCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS--AVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~ 236 (744)
+++++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+... .....++.+..+ .++...
T Consensus 259 al~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 337 (718)
T PRK08043 259 GLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLK 337 (718)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhh
Confidence 99999999999999999999999999999999999999999999999999877544211 111111222222 222110
Q ss_pred CCcCCCccCCCCCceEeeHHHH--H-HcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC
Q 004568 237 SEKDSGVSGGISNWTVSSFSEV--E-KLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (744)
. ...+.+. . ..............++|+++++|||||||.||||++||+++++.+......+ +
T Consensus 338 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~ 402 (718)
T PRK08043 338 D--------------DVTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-D 402 (718)
T ss_pred h--------------hcchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-C
Confidence 0 0001110 0 0000001111234679999999999999999999999999999988887777 8
Q ss_pred CCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCc----ccccccchhhccCccccceEecceEEeechHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST----LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~----~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~ 388 (744)
+.++|++++.+|++|.+++.. .+.++..|+++++.+. ..+.+ .+.++++|+++++|+++..+.+
T Consensus 403 ~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~-----------~i~~~~vt~~~~~p~~~~~l~~ 471 (718)
T PRK08043 403 FTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPE-----------LVYDRNCTVLFGTSTFLGNYAR 471 (718)
T ss_pred CCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHH-----------HHHhcCCeEEEchHHHHHHhhh
Confidence 899999999999999999865 4577999999988432 22223 3889999999999999876643
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
.. .....++||.+++||+++++++.+.+++.
T Consensus 472 ~~-------------------------------------------------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~ 502 (718)
T PRK08043 472 FA-------------------------------------------------NPYDFARLRYVVAGAEKLQESTKQLWQDK 502 (718)
T ss_pred hc-------------------------------------------------CcccccceEEEEEeCccCCHHHHHHHHHH
Confidence 10 00112589999999999999999999988
Q ss_pred cCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC--CCc
Q 004568 469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN--NPG 546 (744)
Q Consensus 469 ~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~--~~~ 546 (744)
+|++++++||+||+++.++...+...+.+++|+|+||++++|+|. ++ .++.|||+++|++++.|||+ +++
T Consensus 503 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~-~~-------~~~~Gel~v~g~~v~~GY~~~e~~~ 574 (718)
T PRK08043 503 FGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSV-PG-------IEQGGRLQLKGPNIMNGYLRVEKPG 574 (718)
T ss_pred cCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecC-CC-------CCCceEEEEecCCccccccCCCCcc
Confidence 999999999999998777655444456789999999999999983 32 23569999999999999998 455
Q ss_pred cc-------ccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCC
Q 004568 547 KT-------SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (744)
Q Consensus 547 ~t-------~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~ 619 (744)
.+ .+.+. .+ |||+|||+|++|+||+++|+||+||+||+ +|++|+|.|||++|.+|+.+.+++|++.++
T Consensus 575 ~~~~~~~~~~~~~~--~~--gw~~TGDlg~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~ 649 (718)
T PRK08043 575 VLEVPTAENARGEM--ER--GWYDTGDIVRFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSD 649 (718)
T ss_pred cccccccccccccc--cC--CeEecCCEEEEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccC
Confidence 32 22221 34 89999999999999999999999999997 599999999999999999998988998876
Q ss_pred CC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 620 HN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 620 ~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
+. .++++++... . + .+++++ +|++..
T Consensus 650 ~~~ge~~v~~~~~~~-~------------~---------------~~~l~~-----------------------~~~~~~ 678 (718)
T PRK08043 650 ASKGEALVLFTTDSE-L------------T---------------REKLQQ-----------------------YAREHG 678 (718)
T ss_pred CCCCceEEEEEcCcc-c------------C---------------HHHHHH-----------------------HHHhcC
Confidence 54 3666653211 0 0 134666 777445
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
|+.|++|+.|++++++ | +|++|||+|++|++++.+
T Consensus 679 l~~~~vP~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 679 VPELAVPRDIRYLKQL--P----LLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred CCcccCCceEEEeccc--C----cCCCCCcCHHHHHHHHhc
Confidence 9999999999999999 8 999999999999988764
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=660.76 Aligned_cols=519 Identities=20% Similarity=0.261 Sum_probs=414.2
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +.++++....+++.+...++ ...+++. .++.++|+++++++||++|+++ ++.
T Consensus 427 p~~~---i~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~l~~~~~~~~~~~p~~~Al~~------------~~~---- 482 (1296)
T PRK10252 427 PALL---CGDVDILLPGEYAQLAQVNA----TAVEIPE-TTLSALVAQQAAKTPDAPALAD------------ARY---- 482 (1296)
T ss_pred CCCC---hhhcCCCCHHHHHHHHHhcC----CCCCCCc-CCHHHHHHHHHHhCCCCeEEEc------------CCC----
Confidence 5555 67777777666655322222 2233343 6899999999999999999985 332
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++.+++++++
T Consensus 483 -------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~ 555 (1296)
T PRK10252 483 -------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDAR 555 (1296)
T ss_pred -------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
+++++++......+.. .+.+. ++. +...... ..........++++++|+|
T Consensus 556 ~~~~i~~~~~~~~~~~----~~~~~-~~~-----------------------~~~~~~~--~~~~~~~~~~~~~~a~i~~ 605 (1296)
T PRK10252 556 PSLLITTADQLPRFAD----VPDLT-SLC-----------------------YNAPLAP--QGAAPLQLSQPHHTAYIIF 605 (1296)
T ss_pred CCEEEECcchhhhccc----CCCce-eee-----------------------ccccccc--ccCCCCCCCCCCCeEEEEE
Confidence 9999999876543321 11111 111 1110000 0001112336789999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++++.+.+....+ ++.++|++++.+|++|..+++..+.+|..|+++++.++....+. .
T Consensus 606 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~ 679 (1296)
T PRK10252 606 TSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDP-----L 679 (1296)
T ss_pred CCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCH-----H
Confidence 99999999999999999999999998888 89999999999999999999888999999999999554332221 2
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...++++++|++.++|+++..+++....... ..
T Consensus 680 ~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------------------------------~~ 714 (1296)
T PRK10252 680 AMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------------------------------RQ 714 (1296)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------------------------------cc
Confidence 233349999999999999999988753211000 00
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC-------CCCCccCCCcCccEEEEEecCC
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-------PSVGRVGPPVPCCYIKLVSWDE 515 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~vG~p~~~~~v~i~d~~~ 515 (744)
..+++|.+++||+++++++.+.+.+.++++++|.||+||++..++...... ....++|+|++|++++|+| ++
T Consensus 715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~ 793 (1296)
T PRK10252 715 SCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-AR 793 (1296)
T ss_pred cCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CC
Confidence 114799999999999999999999888999999999999988776543322 2346899999999999998 56
Q ss_pred CCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC--CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeee
Q 004568 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (744)
Q Consensus 516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~ 593 (744)
++. +++|+.|||+|+|++++.||+++|+.|+++|..++ ++.+||+|||+|++++||+++|+||.||+||+ +|++
T Consensus 794 ~~~---~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~-~G~r 869 (1296)
T PRK10252 794 MRP---VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKI-RGQR 869 (1296)
T ss_pred CCC---CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEE-eeEE
Confidence 654 56899999999999999999999999999997543 24579999999999999999999999999998 5999
Q ss_pred eccHHHHHHHhcCcCcceEEEEec---------CCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHH
Q 004568 594 ISLGKVEAALISSDYVDNIMIHAD---------PFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQA 664 (744)
Q Consensus 594 V~p~eIE~~l~~~p~V~~a~V~g~---------~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 664 (744)
|+|.|||++|.+||+|.+|+|++. .+...++|+|++..+. ..+ .++
T Consensus 870 i~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~----------~~~---------------~~~ 924 (1296)
T PRK10252 870 IELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGL----------PLD---------------TSA 924 (1296)
T ss_pred ecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCC----------CCC---------------HHH
Confidence 999999999999999999987653 1123699999986531 000 134
Q ss_pred HHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHH
Q 004568 665 LSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~ 733 (744)
|++ +++ .+||.||+|..++.++++ | +|++|||+|++|.+
T Consensus 925 l~~-----------------------~l~-~~Lp~~~~P~~~~~~~~l--P----~t~~GKidr~~L~~ 963 (1296)
T PRK10252 925 LQA-----------------------QLR-ERLPPHMVPVVLLQLDQL--P----LSANGKLDRKALPL 963 (1296)
T ss_pred HHH-----------------------HHH-hhCchhcCCcEEEEecCC--C----CCCCcChhHHhcCC
Confidence 555 555 589999999999999999 8 99999999999865
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-68 Score=712.07 Aligned_cols=527 Identities=21% Similarity=0.273 Sum_probs=425.3
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +.+++++...+++.+...++ ....+++...+++++|+++++++||++|+++. ++
T Consensus 3687 ~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~-----------~~----- 3744 (4334)
T PRK05691 3687 FHGD---LSELPLLGEQERDFLLDGCN---RSERDYPLEQSYVRLFEAQVAAHPQRIAASCL-----------DQ----- 3744 (4334)
T ss_pred cCCC---hhhcCCCCHHHHHHHHHhhC---CccCCCccccCHHHHHHHHHHhCCCceEEEcC-----------CC-----
Confidence 5555 88888888888776666555 33445566689999999999999999999873 33
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||+++++++|+.|.+.|+++|++|+|++++++++++++|||+++|+++|||||.+|.+++.+++++++
T Consensus 3745 -------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~ 3817 (4334)
T PRK05691 3745 -------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSR 3817 (4334)
T ss_pred -------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCe--eEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEE
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVI 280 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i 280 (744)
+++++++.........+....... ..++..+ +................++++|||
T Consensus 3818 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ayv 3874 (4334)
T PRK05691 3818 TPVLVCSAACREQARALLDELGCANRPRLLVWE-----------------------EVQAGEVASHNPGIYSGPDNLAYV 3874 (4334)
T ss_pred CCEEEecCcccchhhhhhcccccccccceeeec-----------------------ccccccccccCCCCCCCCCceEEE
Confidence 999999987655443333222211 1111111 111001111112234578999999
Q ss_pred EecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhh
Q 004568 281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKI 360 (744)
Q Consensus 281 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 360 (744)
+|||||||.||||+++|+++++.+.+....+ +++++|+++++.|++|+.+++..+.+|..|+++++.+.....+.
T Consensus 3875 i~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~---- 3949 (4334)
T PRK05691 3875 IYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDP---- 3949 (4334)
T ss_pred EECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCH----
Confidence 9999999999999999999999999988888 99999999999999999999999999999999998543322221
Q ss_pred ccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHH
Q 004568 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440 (744)
Q Consensus 361 ~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (744)
..+...++++++|++.++|+++..++.....
T Consensus 3950 -~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~------------------------------------------------ 3980 (4334)
T PRK05691 3950 -QGLLAHVQAQGITVLESVPSLIQGMLAEDRQ------------------------------------------------ 3980 (4334)
T ss_pred -HHHHHHHHHcCCeEEEeCHHHHHHHHhhccc------------------------------------------------
Confidence 2233349999999999999999887642100
Q ss_pred HHhcCcEEEEEEecCCCCHHHHHHHHhh-cCCceecccChhhhcccccccCCCC----CCCCccCCCcCccEEEEEecCC
Q 004568 441 AVLGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAYGLTETCAGSTFSEWDD----PSVGRVGPPVPCCYIKLVSWDE 515 (744)
Q Consensus 441 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~-~g~~i~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~~~v~i~d~~~ 515 (744)
..++||.+++|||++++++.+.|.+. .+++++|.||+|||+..+++..... ....++|+|++|++++|+| +.
T Consensus 3981 --~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~ 4057 (4334)
T PRK05691 3981 --ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EA 4057 (4334)
T ss_pred --cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CC
Confidence 01479999999999999998887665 4789999999999998776554322 1235799999999999998 55
Q ss_pred CCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC---CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCee
Q 004568 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (744)
Q Consensus 516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~ 592 (744)
+.. +|.|..|||+|+|+++++||+|+|+.|+++|..++ +|.+||||||+|++++||+|+|+||+|++||++ |+
T Consensus 4058 ~~~---~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~-G~ 4133 (4334)
T PRK05691 4058 LEL---VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR-GY 4133 (4334)
T ss_pred CCC---CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec-eE
Confidence 554 67999999999999999999999999999997543 356899999999999999999999999999995 99
Q ss_pred eeccHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccc
Q 004568 593 YISLGKVEAALISSDYVDNIMIHADPF--HNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKAST 670 (744)
Q Consensus 593 ~V~p~eIE~~l~~~p~V~~a~V~g~~~--~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 670 (744)
||++.|||++|.++|+|.+|+|+...+ .+.++|||++..... ...+ ..+.|++
T Consensus 4134 riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------------~~~~----~~~~l~~--- 4188 (4334)
T PRK05691 4134 RIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------------AQGA----LLERIKQ--- 4188 (4334)
T ss_pred EecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc------------------cchH----HHHHHHH---
Confidence 999999999999999999998875432 357999999865320 0111 2234555
Q ss_pred cccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 671 LVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
+++ .+||.||+|+.++.++++ | +|++|||+|++|.+.
T Consensus 4189 --------------------~l~-~~Lp~ymvP~~~~~~~~l--P----~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4189 --------------------RLR-AELPDYMVPLHWLWLDRL--P----LNANGKLDRKALPAL 4225 (4334)
T ss_pred --------------------HHH-hhCChhhcCcceeecccC--C----CCCCCcccHhhcCCC
Confidence 555 599999999999999999 8 999999999999764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=587.65 Aligned_cols=495 Identities=24% Similarity=0.301 Sum_probs=403.2
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|+.++|+++++++||++|+++ ++. .+||+||.+++.++|..|.+.|+++|++|+
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~ 75 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVA 75 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347899999999999999999985 333 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++.+....+.........++.++.++......
T Consensus 76 v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (542)
T PRK06155 76 LMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS 155 (542)
T ss_pred EECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999887776665544333455566655432100
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
....+. ..++.. ...........++++++|+|||||||.||+|+++|+++.+........+ ++.++++
T Consensus 156 ------~~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~ 223 (542)
T PRK06155 156 ------VPAGWS---TAPLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDV 223 (542)
T ss_pred ------cccccc---hhhhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCE
Confidence 000000 001110 1111112344678999999999999999999999999998877777777 8899999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
+++.+|++|..++...+.++..|+++++. ++..+++. ++++++|++.++|+++..|.+.....
T Consensus 224 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~--- 289 (542)
T PRK06155 224 LYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPA-----------VRRHGATVTYLLGAMVSILLSQPARE--- 289 (542)
T ss_pred EEEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHcCcCcc---
Confidence 99999999999998778889999999883 34444444 99999999999999998876531100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecc
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~ 476 (744)
....+++|.++.|| +++++.+.+++.+|+++++.
T Consensus 290 --------------------------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~ 323 (542)
T PRK06155 290 --------------------------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDG 323 (542)
T ss_pred --------------------------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEee
Confidence 00124788877665 57888888888899999999
Q ss_pred cChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc---cccccccCCCcccccccc
Q 004568 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFNNPGKTSEVYK 553 (744)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~---~v~~gY~~~~~~t~~~f~ 553 (744)
||+||++.+++... .....+++|.|+++++++|+| +++.. ++.|+.|||+++|+ +++.||+++++.+.+.|
T Consensus 324 YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~- 397 (542)
T PRK06155 324 YGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQE---LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW- 397 (542)
T ss_pred ecccccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCCccccchhhcCCHHHHHHhh-
Confidence 99999988766543 234568999999999999998 55654 56889999999998 69999999999999988
Q ss_pred cCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 004568 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (744)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~ 630 (744)
.+ +||+|||+|++++||+++|+||.+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ ..+.+++++.
T Consensus 398 --~~--~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~ 472 (542)
T PRK06155 398 --RN--LWFHTGDRVVRDADGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLR 472 (542)
T ss_pred --cC--CcEeccceEEEcCCceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEEC
Confidence 66 89999999999999999999999999996 6999999999999999999999999998764 3577888876
Q ss_pred HHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec
Q 004568 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710 (744)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~ 710 (744)
.+. ..+ ..++++ +|+ .+|+.|++|..|++++
T Consensus 473 ~~~----------~~~---------------~~~~~~-----------------------~~~-~~l~~~~~P~~i~~~~ 503 (542)
T PRK06155 473 DGT----------ALE---------------PVALVR-----------------------HCE-PRLAYFAVPRYVEFVA 503 (542)
T ss_pred CCC----------CCC---------------HHHHHH-----------------------HHH-hhCcCccCCcEEEEec
Confidence 532 000 134555 666 5899999999999999
Q ss_pred CCCCCCCCccccccccChHHHHHHH
Q 004568 711 EPWTPEAGLVTAALKIKREQLKAKF 735 (744)
Q Consensus 711 ~~~~p~~~~~t~~GKi~R~~l~~~~ 735 (744)
++ | +|++||++|++|++++
T Consensus 504 ~i--P----~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 504 AL--P----KTENGKVQKFVLREQG 522 (542)
T ss_pred cC--C----CCcccceeHHHHHhhc
Confidence 98 8 9999999999999866
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=589.82 Aligned_cols=514 Identities=23% Similarity=0.296 Sum_probs=391.1
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|++.++++|+++|+++ ++. .+||+||.++++++|++|.++|+++||+|+|+
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~ 70 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL 70 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5789999999999999999986 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCC-----eeEEEEecCCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT-----IKNVIYFENDG 236 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~ii~~~~~~ 236 (744)
++|+++|++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+..+...++. ...++.++...
T Consensus 71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (579)
T PLN03102 71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID 150 (579)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence 9999999999999999999999999999999999999999999999998877666655433221 12234443211
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCCCCC----CCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCC
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD----PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 312 (744)
... .......+++++.......+.. .....++++++|+|||||||.||+|+++|+++..........+
T Consensus 151 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~- 222 (579)
T PLN03102 151 FPK-------RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW- 222 (579)
T ss_pred ccc-------CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-
Confidence 100 0011223455555433221111 1224578999999999999999999999999765544443344
Q ss_pred CCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 313 ~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
.+...+++++.+|++|..++...+.++..|+++++. ++..+++. |+++++|++.++|+++..|.+.
T Consensus 223 ~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 291 (579)
T PLN03102 223 EMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKN-----------IEMHNVTHMCCVPTVFNILLKG 291 (579)
T ss_pred CCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHH-----------HHHcCCeEEEeChHHHHHHHhC
Confidence 567788999999999999987777778888888773 33334443 9999999999999999998753
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 469 (744)
..... ...++++.+++||+++++.+.++++. +
T Consensus 292 ~~~~~-----------------------------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~ 323 (579)
T PLN03102 292 NSLDL-----------------------------------------------SPRSGPVHVLTGGSPPPAALVKKVQR-L 323 (579)
T ss_pred ccccc-----------------------------------------------CCcccceEEEECCCCCCHHHHHHHHH-c
Confidence 11000 00135778999999999999998876 5
Q ss_pred CCceecccChhhhcccccccCCCC--------------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccc
Q 004568 470 GAPIGQAYGLTETCAGSTFSEWDD--------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF 535 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~~~--------------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~ 535 (744)
|+++++.||+||+++.++...... ...+..+.|+++ +++++.+.+..++ .+.++.|||+|+|+
T Consensus 324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~-~~~~~~GEl~v~g~ 400 (579)
T PLN03102 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVP-RDGKTMGEIVIKGS 400 (579)
T ss_pred CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccC-CCCCCceEEEEECc
Confidence 999999999999986543321110 112334445444 4555544444332 12246799999999
Q ss_pred cccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEE
Q 004568 536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615 (744)
Q Consensus 536 ~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~ 615 (744)
+++.|||++++.|.+.| .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|+
T Consensus 401 ~~~~GY~~~~~~t~~~f---~~--gw~~TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv 474 (579)
T PLN03102 401 SIMKGYLKNPKATSEAF---KH--GWLNTGDVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVV 474 (579)
T ss_pred chhhhhcCChhhhHhhh---cc--CceecCceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEE
Confidence 99999999999999999 66 89999999999999999999999999996 69999999999999999999999999
Q ss_pred ecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHH
Q 004568 616 ADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVA 692 (744)
Q Consensus 616 g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (744)
+.+++ ..++|+|++.++... ..+...+ ... -..++++ ++
T Consensus 475 ~~~~~~~~~~~~a~v~~~~~~~~--------~~~~~~~------~~~-~~~~l~~-----------------------~~ 516 (579)
T PLN03102 475 AMPHPTWGETPCAFVVLEKGETT--------KEDRVDK------LVT-RERDLIE-----------------------YC 516 (579)
T ss_pred eccCccccceeEEEEEecCcccc--------ccccccc------ccc-cHHHHHH-----------------------HH
Confidence 99875 369999998754200 0000000 000 0134555 66
Q ss_pred HhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 693 KAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 693 ~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
+ .+|+.|++|..+++++++ | +|++||++|++|++++++.+
T Consensus 517 ~-~~L~~~~~P~~i~~~~~~--P----~t~~gKi~r~~L~~~~~~~~ 556 (579)
T PLN03102 517 R-ENLPHFMCPRKVVFLQEL--P----KNGNGKILKPKLRDIAKGLV 556 (579)
T ss_pred H-hhcccccCCeEEEEcccC--C----CCCcccccHHHHHHHHHHhh
Confidence 6 589999999999999999 8 99999999999999987754
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=581.95 Aligned_cols=478 Identities=21% Similarity=0.261 Sum_probs=391.1
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
+++.++|+++++++||++|+.+ ++. .+||.||.++++++|+.|.+.|. +|++|+|+
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~ 56 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAIL 56 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 3688999999999999999985 333 69999999999999999999984 89999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++......+... ...++..+
T Consensus 57 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~-------- 122 (487)
T PRK07638 57 LENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEID-------- 122 (487)
T ss_pred cCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEeh--------
Confidence 9999999999999999999999999999999999999999999999998654433211 01122111
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
.+.+....... .........+++++|+|||||||.||||+++|++++..+......+ ++.++|+++
T Consensus 123 ------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~ 188 (487)
T PRK07638 123 ------------EWKRMIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVL 188 (487)
T ss_pred ------------hhhhhhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEE
Confidence 11111111111 1111222356789999999999999999999999999988877777 889999999
Q ss_pred ecCChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 322 AYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 322 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
...|++|..++...+.++..|+++++. ++..+++. ++++++|++.++|+++..+.+.. .
T Consensus 189 ~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~-----~-- 250 (487)
T PRK07638 189 IAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDK-----------LETENISVMYTVPTMLESLYKEN-----R-- 250 (487)
T ss_pred EeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc-----C--
Confidence 999999998887778889999999984 44444444 99999999999999999887530 0
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceeccc
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~Y 477 (744)
...+.+.++++|++++.++.+++...+ ++++++.|
T Consensus 251 --------------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y 286 (487)
T PRK07638 251 --------------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY 286 (487)
T ss_pred --------------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 012455678899999999999998887 78999999
Q ss_pred ChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC
Q 004568 478 GLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (744)
Q Consensus 478 G~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (744)
|+||++.++...... ....+++|+|+++++++|+| ++|.. +++|+.|||+|+|+.++.|||++++.+.+.+ .
T Consensus 287 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~ 359 (487)
T PRK07638 287 GASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEE---VQKGEIGTVYVKSPQFFMGYIIGGVLARELN---A 359 (487)
T ss_pred cCCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCC---CCCCCCeEEEEecccceeeecCCHHHHhhhc---c
Confidence 999999776654432 23457999999999999999 56654 5689999999999999999999998877655 5
Q ss_pred CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHH
Q 004568 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKA 633 (744)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~ 633 (744)
+ |||+|||+|++|+||+++++||.+|+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ ..++++|+....
T Consensus 360 ~--g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~- 435 (487)
T PRK07638 360 D--GWMTVRDVGYEDEEGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSAT- 435 (487)
T ss_pred C--CcEecCccEeEcCCCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCC-
Confidence 6 89999999999999999999999999997 6999999999999999999999999998865 357888764321
Q ss_pred HHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCC
Q 004568 634 LEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPW 713 (744)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~ 713 (744)
.+++++ +++ ..|+.|++|+.+++++++
T Consensus 436 ----------------------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~v~~i- 462 (487)
T PRK07638 436 ----------------------------KQQLKS-----------------------FCL-QRLSSFKIPKEWHFVDEI- 462 (487)
T ss_pred ----------------------------HHHHHH-----------------------HHH-HHhhcccCCcEEEEeccc-
Confidence 135555 665 589999999999999999
Q ss_pred CCCCCccccccccChHHHHHHHHHHHHhhh
Q 004568 714 TPEAGLVTAALKIKREQLKAKFKDDLQMLY 743 (744)
Q Consensus 714 ~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y 743 (744)
| +|++||++|++|++++.+ +++.|
T Consensus 463 -P----~t~~GKv~r~~L~~~~~~-~~~~~ 486 (487)
T PRK07638 463 -P----YTNSGKIARMEAKSWIEN-QEKIY 486 (487)
T ss_pred -C----CCCcccccHHHHHHHHhc-ccccc
Confidence 8 999999999999887765 44444
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-68 Score=717.47 Aligned_cols=523 Identities=21% Similarity=0.257 Sum_probs=424.0
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +.+++++...++..+...++ .....++...+++++|+++++++||++|+++ ++
T Consensus 478 p~~~---i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~------------~~----- 534 (5163)
T PRK12316 478 PQAR---VDELPMLDAEERGQLVEGWN---ATAAEYPLQRGVHRLFEEQVERTPEAPALAF------------GE----- 534 (5163)
T ss_pred cccc---cccCCCCCHHHHHHHHHHhc---CccccCCCCCCHHHHHHHHHHHCCCCeEEEe------------CC-----
Confidence 5666 88888888887766655444 2233344457999999999999999999986 22
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
+.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 535 ------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~ 608 (5163)
T PRK12316 535 ------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSG 608 (5163)
T ss_pred ------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCC
Confidence 26999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
+++++++......+.. .... .++.++... .... ............++++|+|+|
T Consensus 609 ~~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~a~ii~ 662 (5163)
T PRK12316 609 VQLLLSQSHLGRKLPL----AAGV-QVLDLDRPA--------------------AWLE-GYSEENPGTELNPENLAYVIY 662 (5163)
T ss_pred CCEEEEChhhhhhCCc----ccCc-eEEEecCcc--------------------hhhc-cCCCCCCCCCCCCCCeEEEEE
Confidence 9999998765433211 1111 122222110 0000 001111223456899999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++++.+.+....+ ++.++|++++++|++|+.+++..+.+|..|+++++.++....+. .
T Consensus 663 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~-----~ 736 (5163)
T PRK12316 663 TSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDP-----A 736 (5163)
T ss_pred CCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCH-----H
Confidence 99999999999999999999999998888 89999999999999999999988999999999998543222221 2
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...++++++|++.++|++++.|.+.... .
T Consensus 737 ~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------------------------------~ 767 (5163)
T PRK12316 737 KLVELINREGVDTLHFVPSMLQAFLQDEDV-------------------------------------------------A 767 (5163)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHhcccc-------------------------------------------------c
Confidence 233339999999999999999988642100 0
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhhhcccccccCC--CCCCCCccCCCcCccEEEEEecCCCCcc
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYK 519 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~~~~~~ 519 (744)
..+++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++.... ......++|+|++|++++|+| +++..
T Consensus 768 ~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~- 845 (5163)
T PRK12316 768 SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-ANLEP- 845 (5163)
T ss_pred cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-CCCCC-
Confidence 114899999999999999988886544 7899999999999865544332 223457899999999999999 55554
Q ss_pred CCCCCCCCcEEEEccccccccccCCCcccccccccCC--CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccH
Q 004568 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (744)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~ 597 (744)
++.|+.|||+|+|++++.||+++|+.|+++|..++ +|.+||+|||+|++++||+|+|+||+||+||+ +|+||+|.
T Consensus 846 --~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~-~G~rI~~~ 922 (5163)
T PRK12316 846 --VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKL-RGLRIELG 922 (5163)
T ss_pred --CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEE-ceEEcChH
Confidence 67999999999999999999999999999997543 45589999999999999999999999999998 59999999
Q ss_pred HHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhh
Q 004568 598 KVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEF 677 (744)
Q Consensus 598 eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 677 (744)
|||++|.+||+|.+|+|++.+ ...++|+|++.++. .. ..++|++
T Consensus 923 EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~----------~~---------------~~~~l~~---------- 966 (5163)
T PRK12316 923 EIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEG----------GD---------------WREALKA---------- 966 (5163)
T ss_pred HHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCC----------CC---------------CHHHHHH----------
Confidence 999999999999999999988 67799999987632 00 0145666
Q ss_pred hhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 678 FLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
+++ .+||.||+|+.|++++++ | +|++|||+|++|.+.+.
T Consensus 967 -------------~l~-~~Lp~y~vP~~i~~v~~l--P----~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 967 -------------HLA-ASLPEYMVPAQWLALERL--P----LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred -------------HHH-hhCCCccCCCeEEEHhhC--C----CCCCCChhHHhhcCccc
Confidence 666 689999999999999999 8 99999999999987544
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=714.07 Aligned_cols=538 Identities=20% Similarity=0.265 Sum_probs=432.4
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +..++++...++..+...++ ....+++...+++++|+++++++||++|+++ ++.
T Consensus 4518 p~~~---~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~---- 4575 (5163)
T PRK12316 4518 PQRR---LGELQLLEKAEQQRIVALWN---RTDAGYPATRCVHQLVAERARMTPDAVAVVF------------DEE---- 4575 (5163)
T ss_pred cccc---hhhhccCCHHHHHHHHhccC---CCCcCCCccccHHHHHHHHHHhCCCCeEEEe------------CCc----
Confidence 5566 78888887777766655444 2333445668999999999999999999986 333
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 4576 -------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~ 4648 (5163)
T PRK12316 4576 -------KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSG 4648 (5163)
T ss_pred -------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
++++|++....+.+.. ..... ++.++.. .+. .......+.....++++|+|+|
T Consensus 4649 ~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~--------------------~~~--~~~~~~~~~~~~~~~~~a~ii~ 4701 (5163)
T PRK12316 4649 AALLLTQSHLLQRLPI----PDGLA-SLALDRD--------------------EDW--EGFPAHDPAVRLHPDNLAYVIY 4701 (5163)
T ss_pred CCEEEechhhhhhccc----ccCcc-eEeecch--------------------hhc--ccCCccCCccCCCCCceEEEEE
Confidence 9999998765443311 11111 1111110 000 0001111223457899999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++++.+.+....+ +++++|++++++|++|+.++...+.+|..|+++++.+...+ + +.
T Consensus 4702 TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~-~-----~~ 4774 (5163)
T PRK12316 4702 TSGSTGRPKGVAVSHGSLVNHLHATGERY-ELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLW-D-----PE 4774 (5163)
T ss_pred CCCCCCCCCEeeeccHHHHHHHHHHHHhc-CCCcCCeEEEecCcchhhHHHHHHHHHhCCCEEEEcCcccC-C-----HH
Confidence 99999999999999999999999988888 89999999999999999999888999999999999543321 1 12
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...++++++|+++++|++++.+.+..... .
T Consensus 4775 ~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------------------------------------------------~ 4806 (5163)
T PRK12316 4775 RLYAEIHEHRVTVLVFPPVYLQQLAEHAERD------------------------------------------------G 4806 (5163)
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHhhhccc------------------------------------------------c
Confidence 2333499999999999999999887532110 0
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhh-cCCceecccChhhhcccccccCCCC-----CCCCccCCCcCccEEEEEecCCC
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINIC-MGAPIGQAYGLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEG 516 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~-~g~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~v~i~d~~~~ 516 (744)
..++||.+++|||++++++.+.+.+. .+++++|+||+||+++.++...... ....++|+|++|++++|+| +++
T Consensus 4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 4885 (5163)
T PRK12316 4807 EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-GQL 4885 (5163)
T ss_pred CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-CCC
Confidence 12589999999999999998666544 4789999999999998776554322 3457899999999999998 555
Q ss_pred CccCCCCCCCCcEEEEccccccccccCCCcccccccccCC---CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeee
Q 004568 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (744)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~ 593 (744)
.. ++.|+.|||+|+|+++++|||++|+.|+++|..++ +|.+||+|||+|++++||.++|+||+||+||+ +|++
T Consensus 4886 ~~---~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki-~G~r 4961 (5163)
T PRK12316 4886 NP---LPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI-RGFR 4961 (5163)
T ss_pred Cc---CCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccceEee-ccEe
Confidence 54 67999999999999999999999999999997432 24589999999999999999999999999998 5999
Q ss_pred eccHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhcccc
Q 004568 594 ISLGKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTL 671 (744)
Q Consensus 594 V~p~eIE~~l~~~p~V~~a~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 671 (744)
|+|.|||++|.+||+|.+|+|++.++. ..++|+|++...... .+.+....+.++|++
T Consensus 4962 i~~~eIE~~l~~~p~V~~a~v~~~~~~~~~~l~a~v~~~~~~~~-----------------~~~~~~~~~~~~l~~---- 5020 (5163)
T PRK12316 4962 IELGEIEARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALA-----------------DADEAQAELRDELKA---- 5020 (5163)
T ss_pred ecHHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEeCCccccc-----------------cccccchhhHHHHHH----
Confidence 999999999999999999999987643 469999998754210 011223345566777
Q ss_pred ccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHhhh
Q 004568 672 VSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743 (744)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~~Y 743 (744)
+++ .+||.||+|..+++++++ | +|++||++|++|.+.+.+.+++.|
T Consensus 5021 -------------------~l~-~~lp~y~vP~~~~~~~~l--P----~t~~GKvdR~~L~~~~~~~~~~~~ 5066 (5163)
T PRK12316 5021 -------------------ALR-ERLPEYMVPAHLVFLARM--P----LTPNGKLDRKALPQPDASLLQQAY 5066 (5163)
T ss_pred -------------------HHh-ccCchhhCCcceeecccC--C----CCCCcccChhhcCCcccccccccc
Confidence 776 799999999999999998 8 999999999999988877666554
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=592.68 Aligned_cols=521 Identities=17% Similarity=0.161 Sum_probs=388.4
Q ss_pred HHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 004568 85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164 (744)
Q Consensus 85 ~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n 164 (744)
..+|.++++++|+++|+++.+ ++. ..++++.+||+||.++++++|+.|+++|+++||+|+++++|
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~~----------e~~-----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn 242 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWRD----------EGS-----DDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM 242 (728)
T ss_pred HHHHHHHhccCCCCeEEEEEC----------CCC-----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 346666667799999999852 110 01234689999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh------hHHHHhhccCCCeeEEEEecCCCCC
Q 004568 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL------KKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 165 ~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
++|+++++|||+++|++++|+++.++++++.+++++++++++|+++... +....+..... ..++++......
T Consensus 243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~ 320 (728)
T PLN03052 243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKS 320 (728)
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCc
Confidence 9999999999999999999999999999999999999999999987532 11222211111 123333221100
Q ss_pred cCCCccCCCCCceEeeHHHHHHcCCCC----CCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC
Q 004568 239 KDSGVSGGISNWTVSSFSEVEKLGKRS----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (744)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (744)
.. ... .....+|+++....... ...+....++++++|+|||||||.||||+++|.+++..+......+ ++
T Consensus 321 ~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l 394 (728)
T PLN03052 321 VR---VKL--REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DI 394 (728)
T ss_pred cc---ccc--ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CC
Confidence 00 000 01134577765432111 1111223568999999999999999999999999887776666566 88
Q ss_pred CCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
.++|++++++|++|+++.+..+.+|..|+++++.+..... ..+++.++++++|++.++|++++.+.+....
T Consensus 395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~-------~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~-- 465 (728)
T PLN03052 395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLG-------RGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM-- 465 (728)
T ss_pred CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCC-------ChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--
Confidence 9999999999999999987777889999999984321100 1133339999999999999999987652100
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC-Cce
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-API 473 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~i 473 (744)
+..++++||.+++||++++++...++...++ .++
T Consensus 466 ---------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i 500 (728)
T PLN03052 466 ---------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPI 500 (728)
T ss_pred ---------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCe
Confidence 0112258999999999999999888777665 579
Q ss_pred ecccChhhhcccccccCC-CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCC--CcEEEEccc--cccccccCCCccc
Q 004568 474 GQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVVGGF--NVTAGYFNNPGKT 548 (744)
Q Consensus 474 ~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~--~GEl~v~g~--~v~~gY~~~~~~t 548 (744)
++.||+||+++.+....+ .....+++|.|++|++++|+| ++|+.+ +.|+ .|||+++++ ....+|+++. .+
T Consensus 501 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v---~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~ 575 (728)
T PLN03052 501 IEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPY---PDDAPCTGELALFPLMFGASSTLLNAD-HY 575 (728)
T ss_pred EeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCC---CCCCCceEEEEEeCCCCCCCccccCch-hh
Confidence 999999999865443322 223468899999999999999 677654 4564 699999865 3345677763 33
Q ss_pred ccccccCC--CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHh-cCcCcceEEEEecCCC----C
Q 004568 549 SEVYKVDE--RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI-SSDYVDNIMIHADPFH----N 621 (744)
Q Consensus 549 ~~~f~~~~--~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~----~ 621 (744)
..-|...+ +|.+||+|||++++|+||+++|+||.||+||+ +|+||+|.|||++|. .||.|.+|+|++.+++ +
T Consensus 576 ~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e 654 (728)
T PLN03052 576 KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPE 654 (728)
T ss_pred hhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcE
Confidence 33342111 23469999999999999999999999999997 699999999999995 8999999999998764 4
Q ss_pred eEEEEEEcC--HHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCC
Q 004568 622 YCVALVVPS--HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDK 699 (744)
Q Consensus 622 ~~~A~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 699 (744)
.++|||++. ++. +. + .+++++.|++ +++ .+|++
T Consensus 655 ~~~afVvl~~~~g~----------~~--------~---~~~L~~~i~~-----------------------~i~-~~l~~ 689 (728)
T PLN03052 655 QLVIAAVLKDPPGS----------NP--------D---LNELKKIFNS-----------------------AIQ-KKLNP 689 (728)
T ss_pred EEEEEEEEecCCCC----------CC--------C---HHHHHHHHHH-----------------------HHH-hhcCC
Confidence 599999986 321 10 0 1233344444 444 48999
Q ss_pred ccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 700 FEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 700 ~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
+++|+.|++++++ | +|.+|||+|+.|++.+.+..
T Consensus 690 ~~~p~~i~~v~~l--P----~T~sGKi~Rr~Lr~~~~~~~ 723 (728)
T PLN03052 690 LFKVSAVVIVPSF--P----RTASNKVMRRVLRQQLAQEL 723 (728)
T ss_pred ccCCCEEEEcCCC--C----CCCchHHHHHHHHHHHHhhh
Confidence 9999999999999 8 99999999999999997764
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=581.00 Aligned_cols=484 Identities=24% Similarity=0.320 Sum_probs=398.1
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i 160 (744)
..+.+.|+++|+++||++|+++ +++ .+||+||.++++++|+.|++ .|+++|++|++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i 58 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAI 58 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4688999999999999999985 443 79999999999999999985 79999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+........ ...++.+.
T Consensus 59 ~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 130 (496)
T PRK06839 59 LSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT------- 130 (496)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec-------
Confidence 9999999999999999999999999999999999999999999999999887666554433221 12222221
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
+++++.... ........++++++|+|||||||.||+|+++|.++..........+ ++..+|++
T Consensus 131 -------------~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~ 193 (496)
T PRK06839 131 -------------SLKEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRS 193 (496)
T ss_pred -------------chHhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeE
Confidence 122222111 1112345668999999999999999999999999987776666666 78899999
Q ss_pred EecCChHHHHHHHHH-HHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 321 LAYLPLAHVLELAAE-SIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 321 l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
++.+|++|..++... +.++..|+++++. ++..+.+. ++++++|++.++|++++.+.+....
T Consensus 194 l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~---- 258 (496)
T PRK06839 194 IVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSM-----------IEKHKVTVVMGVPTIHQALINCSKF---- 258 (496)
T ss_pred EEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHH-----------HHhhCCeEEEehHHHHHHHHhCccc----
Confidence 999999999998654 5678999998883 33344444 9999999999999999998753110
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecc
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~ 476 (744)
.....+++|.+++||+++++++.+.+++. |+++.+.
T Consensus 259 -------------------------------------------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~ 294 (496)
T PRK06839 259 -------------------------------------------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQG 294 (496)
T ss_pred -------------------------------------------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEee
Confidence 00112589999999999999999998886 9999999
Q ss_pred cChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccccccccc
Q 004568 477 YGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (744)
Q Consensus 477 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (744)
||+||++..++..... ....+++|+|+++++++|+| +++.. +++|+.|||+|+|+.++.||+++++.+...+
T Consensus 295 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-- 368 (496)
T PRK06839 295 FGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNK---VEVGEVGELLIRGPNVMKEYWNRPDATEETI-- 368 (496)
T ss_pred ccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCC---CCCCCceEEEEECCCcchhhcCChHHHHHHH--
Confidence 9999998765443322 23458999999999999999 45554 6789999999999999999999999998887
Q ss_pred CCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCH
Q 004568 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (744)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~ 631 (744)
.+ |||+|||+|++|++|++++.||.+|+||. +|++|+|.+||++|.++|+|.+|+|++.++.. .++|+|++++
T Consensus 369 -~~--g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~ 444 (496)
T PRK06839 369 -QD--GWLCTGDLARVDEDGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKS 444 (496)
T ss_pred -cC--CCeeecceEEEcCCCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECC
Confidence 66 89999999999999999999999999996 69999999999999999999999999988654 5899999875
Q ss_pred HHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecC
Q 004568 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE 711 (744)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~ 711 (744)
+. ..+ .++|++ +++ ..|+.|++|..++++++
T Consensus 445 ~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~P~~~~~v~~ 475 (496)
T PRK06839 445 SS----------VLI---------------EKDVIE-----------------------HCR-LFLAKYKIPKEIVFLKE 475 (496)
T ss_pred CC----------CCC---------------HHHHHH-----------------------HHH-hhCcCCCCCcEEEEecc
Confidence 32 000 134555 666 58999999999999999
Q ss_pred CCCCCCCccccccccChHHHHHHHHH
Q 004568 712 PWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 712 ~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+ | +|++||++|++|+++.++
T Consensus 476 ~--P----~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 476 L--P----KNATGKIQKAQLVNQLKS 495 (496)
T ss_pred C--C----CCccccccHHHHHHHhhc
Confidence 9 8 999999999999987654
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=582.50 Aligned_cols=493 Identities=21% Similarity=0.303 Sum_probs=397.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
....|+.++|+++++++|+++|+++ +++ .+||+||.++++++|..|.+.|+++|++|
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V 76 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTA 76 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457899999999999999999985 333 79999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhccCCCeeEEEEec
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE 233 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~ 233 (744)
+++++|++++++++|||+++|++++++++..+.+++.++++.+++++++++.... +.........+.++.++...
T Consensus 77 ~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (527)
T TIGR02275 77 VVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAG 156 (527)
T ss_pred EEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEec
Confidence 9999999999999999999999999999999999999999999999999986542 12222223344445554433
Q ss_pred CCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (744)
..... ........... .........++++++++|||||||.||||++||+++...+......+ .
T Consensus 157 ~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~ 220 (527)
T TIGR02275 157 QTRVE--------------AELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-W 220 (527)
T ss_pred CCCCc--------------chhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-C
Confidence 21100 00111111111 11112345678999999999999999999999999999988877777 8
Q ss_pred CCCCcEEEecCChHHHHHHHH--HHHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~--~~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~ 388 (744)
+..+|++++.+|++|.+++.. .+.++..|+++++.+ +..+++ .++++++|++.++|+++..+.+
T Consensus 221 ~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~i~~~~~t~~~~~p~~~~~l~~ 289 (527)
T TIGR02275 221 LTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFP-----------LIERHKVTVTALVPPAVALWMQ 289 (527)
T ss_pred CCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHH-----------HHHHhCCeEEEecHHHHHHHHh
Confidence 899999999999999999864 567789999998833 333333 3999999999999999988765
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
..... ....+++|.+++||+++++++.+.+.+.
T Consensus 290 ~~~~~-----------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 322 (527)
T TIGR02275 290 AASKS-----------------------------------------------RYDLSSLKLLQVGGAKFSEAAARRVPAV 322 (527)
T ss_pred Ccccc-----------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 32110 0012489999999999999999999998
Q ss_pred cCCceecccChhhhcccccccC-CCCCCCCccCCCc-CccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCc
Q 004568 469 MGAPIGQAYGLTETCAGSTFSE-WDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (744)
Q Consensus 469 ~g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (744)
+|+++++.||+||++...+... ......+++|+|+ ++++++|+| ++++. +++|+.|||+++|+.++.|||++++
T Consensus 323 ~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~---~~~g~~Gei~v~g~~~~~gY~~~~~ 398 (527)
T TIGR02275 323 FGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP---VAPGETGMLLTRGPYTFRGYYKAPE 398 (527)
T ss_pred hCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCC---CCCCCceEEEecCCccchhhcCChh
Confidence 9999999999999764433221 1223447899999 589999998 56654 4689999999999999999999999
Q ss_pred ccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeE
Q 004568 547 KTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYC 623 (744)
Q Consensus 547 ~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~ 623 (744)
.+.+.|. .+ |||+|||+|++++||+++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..+
T Consensus 399 ~~~~~~~--~d--g~~~TGDl~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~ 473 (527)
T TIGR02275 399 HNAAAFD--AE--GFYYTGDLVRLTPEGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKS 473 (527)
T ss_pred HhHhhcC--cC--CCEEcCceEEEcCCccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEE
Confidence 9999886 56 89999999999999999999999999996 7999999999999999999999999999876 358
Q ss_pred EEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccce
Q 004568 624 VALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIP 703 (744)
Q Consensus 624 ~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P 703 (744)
+|+|+++++.. + .++|++ ++++.+++.|++|
T Consensus 474 ~a~vv~~~~~~-----------~---------------~~~l~~-----------------------~l~~~~l~~~~~P 504 (527)
T TIGR02275 474 CAFIVVRDPAL-----------K---------------AAQLRR-----------------------FLRERGLAEYKLP 504 (527)
T ss_pred EEEEEECCCCC-----------C---------------HHHHHH-----------------------HHHhCCCccccCC
Confidence 89998765310 0 134555 6663469999999
Q ss_pred eEEEEecCCCCCCCCccccccccChHHHH
Q 004568 704 AKIKLMPEPWTPEAGLVTAALKIKREQLK 732 (744)
Q Consensus 704 ~~i~~~~~~~~p~~~~~t~~GKi~R~~l~ 732 (744)
..+++++++ | +|++||++|++|+
T Consensus 505 ~~i~~v~~i--P----~t~sGKv~r~~L~ 527 (527)
T TIGR02275 505 DRVEFIDSL--P----LTAVGKIDKKALR 527 (527)
T ss_pred CEEEEeccC--C----CCCccceeHHhcC
Confidence 999999998 8 9999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=582.66 Aligned_cols=505 Identities=21% Similarity=0.264 Sum_probs=414.3
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...++.+.++++++++|+++|+.+ +++ .+||.||.++++++|.+|.+.|+++|++|+
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~ 71 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRVL 71 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347899999999999999999986 333 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++......+.......+.++.++.+++...
T Consensus 72 i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (542)
T PRK07786 72 ILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD-- 149 (542)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc--
Confidence 999999999999999999999999999999999999999999999999998877666555555556666666543211
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC-CCCc
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-GRSD 318 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~d 318 (744)
....+++++........ .......+++++++|||||||.||+|++||+++...+......+ ++ ..++
T Consensus 150 ----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 217 (542)
T PRK07786 150 ----------DSVLGYEDLLAEAGPAH-APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSD 217 (542)
T ss_pred ----------ccccCHHHHhhccCCCC-CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCc
Confidence 12345666654332211 22345567899999999999999999999999998888777766 55 6789
Q ss_pred EEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 319 ~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
++++.+|++|.+|+...+.++..|+++++.+...+ + +..++..++++++|+++++|+++..+........
T Consensus 218 ~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---- 287 (542)
T PRK07786 218 VGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAF-D-----PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---- 287 (542)
T ss_pred eEEEecchHHHHHHHHHHHHHHccCEEEEccCCCc-C-----HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc----
Confidence 99999999999999878888999999988432111 1 2223444999999999999999999875311000
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceeccc
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY 477 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~Y 477 (744)
...++|.+++||+++++++.+.+.+.+ ++++++.|
T Consensus 288 --------------------------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~Y 323 (542)
T PRK07786 288 --------------------------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAF 323 (542)
T ss_pred --------------------------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeee
Confidence 002689999999999999999998887 78999999
Q ss_pred ChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccC
Q 004568 478 GLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (744)
Q Consensus 478 G~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (744)
|+||++.+.+...... ...+++|+|++++.++|+| +++.. ++.|+.|||+++|+.++.||+++++.+.+.|
T Consensus 324 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f--- 396 (542)
T PRK07786 324 GQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMND---VPVGEVGEIVYRAPTLMSGYWNNPEATAEAF--- 396 (542)
T ss_pred cccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCC---CcCCCceEEEEEChhhhhhhcCCHHHHHHHh---
Confidence 9999987765443222 2457899999999999999 55554 5688999999999999999999999999998
Q ss_pred CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHH
Q 004568 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHK 632 (744)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~ 632 (744)
.+ |||+|||+++++++|+++++||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.++. ..++++|++..+
T Consensus 397 ~~--~~~~TGDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 473 (542)
T PRK07786 397 AG--GWFHSGDLVRQDEEGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND 473 (542)
T ss_pred hC--CcccccceEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC
Confidence 56 89999999999999999999999999997 6999999999999999999999999998754 358888887643
Q ss_pred HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCC
Q 004568 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEP 712 (744)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~ 712 (744)
. ... ..+++.+ +++ .+++.|++|..+++++++
T Consensus 474 ~---------~~~---------------~~~~l~~-----------------------~l~-~~l~~~~~P~~i~~v~~i 505 (542)
T PRK07786 474 D---------AAL---------------TLEDLAE-----------------------FLT-DRLARYKHPKALEIVDAL 505 (542)
T ss_pred C---------CCC---------------CHHHHHH-----------------------HHH-hhccCCCCCCEEEEeccC
Confidence 1 000 0134555 665 589999999999999998
Q ss_pred CCCCCCccccccccChHHHHHHHHHHH
Q 004568 713 WTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 713 ~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
| +|++||++|++|++.|++.-
T Consensus 506 --P----~t~~GKv~r~~L~~~~~~~~ 526 (542)
T PRK07786 506 --P----RNPAGKVLKTELRERYGACV 526 (542)
T ss_pred --C----CCCcccccHHHHHHHHHhhh
Confidence 8 99999999999999998754
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-66 Score=584.72 Aligned_cols=501 Identities=21% Similarity=0.294 Sum_probs=403.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|.+.++++|+++|+++ ++. .+||+||.++++++|..|++.|+++|++|++
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i 62 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRILV 62 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 47899999999999999999985 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++.+..+.+.......+....++.++...
T Consensus 63 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (528)
T PRK07470 63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR---- 138 (528)
T ss_pred EcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc----
Confidence 9999999999999999999999999999999999999999999999999887666655544444555555544321
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhh-CCCCCCCcE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-IPNPGRSDV 319 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~d~ 319 (744)
...+++++...............++++++|+|||||||.||+|+++|+++...+...... +.+....|+
T Consensus 139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~ 208 (528)
T PRK07470 139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208 (528)
T ss_pred ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence 123455554432222222344567899999999999999999999999997665543332 225678899
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
++.++|++|.+++...+ .++.|+++++.....+ + ...++..++++++|++.++|++++.+.+....
T Consensus 209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 274 (528)
T PRK07470 209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERF-D-----PAEVWALVERHRVTNLFTVPTILKMLVEHPAV------- 274 (528)
T ss_pred EEEeccchhHHHHHHHH-HHhcCceEEEecccCc-C-----HHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------
Confidence 99999999999986544 5677777766322111 1 12233449999999999999999988652100
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccCh
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~ 479 (744)
...+.+++|.+++||++++++..+++.+.+|.++++.||+
T Consensus 275 ----------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~ 314 (528)
T PRK07470 275 ----------------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGL 314 (528)
T ss_pred ----------------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCC
Confidence 0112258999999999999999988888889999999999
Q ss_pred hhhcccccccCCC--------CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccc
Q 004568 480 TETCAGSTFSEWD--------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 480 TE~~~~~~~~~~~--------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (744)
||+++.++..... ....+++|+|+++++++++| +++.. ++.|+.|||+++|+.++.||+++++.+.+.
T Consensus 315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~ 390 (528)
T PRK07470 315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRE---LPPGETGEICVIGPAVFAGYYNNPEANAKA 390 (528)
T ss_pred cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccchhhcCCHHHHHhh
Confidence 9998766544321 22357899999999999999 56654 568899999999999999999999999988
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEE
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVV 628 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv 628 (744)
| .+ |||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.++|.|.+|+|++.+++. .++++++
T Consensus 391 ~---~~--~~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~ 464 (528)
T PRK07470 391 F---RD--GWFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCV 464 (528)
T ss_pred h---cC--CcEecceeEEEccCCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEE
Confidence 8 56 89999999999999999999999999997 69999999999999999999999999988653 4788888
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEE
Q 004568 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKL 708 (744)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~ 708 (744)
+.++. ..+ .+.+++ +++ ..|+.|++|..+++
T Consensus 465 ~~~~~----------~~~---------------~~~~~~-----------------------~l~-~~l~~~~~P~~~~~ 495 (528)
T PRK07470 465 ARDGA----------PVD---------------EAELLA-----------------------WLD-GKVARYKLPKRFFF 495 (528)
T ss_pred ECCCC----------CCC---------------HHHHHH-----------------------HHH-HhhhcCCCCcEEEE
Confidence 76531 000 134555 665 58999999999999
Q ss_pred ecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 709 MPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 709 ~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
++++ | +|++||++|+.|++++.+
T Consensus 496 ~~~i--P----~t~~GKi~r~~l~~~~~~ 518 (528)
T PRK07470 496 WDAL--P----KSGYGKITKKMVREELEE 518 (528)
T ss_pred eccC--C----CCCcccccHHHHHHHHHh
Confidence 9998 8 999999999999998865
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-66 Score=594.57 Aligned_cols=515 Identities=19% Similarity=0.222 Sum_probs=383.1
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCC
Q 004568 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (744)
Q Consensus 77 ~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd 156 (744)
+++...|+.++|+++++++|+++|+++.+.. ++. .+.++.+||+||.++++++|++|.+. +++||
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd 93 (612)
T PRK12476 29 ALPPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGD 93 (612)
T ss_pred cCCccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCC
Confidence 3445578999999999999999999874210 000 12345799999999999999999986 99999
Q ss_pred EEEEEcCCcHHHHHHHHHHHhcCcEEEEc-CCCCC--HHHHHHHHHhcCceEEEECchhhhHHHHhhccCCC--eeEEEE
Q 004568 157 RAAILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIY 231 (744)
Q Consensus 157 ~V~i~~~n~~e~vv~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~ii~ 231 (744)
+|+++++|+++|++++|||+++|++++|+ ++.++ .+++.+++++++++++|+++...+.+.......+. ...++.
T Consensus 94 ~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (612)
T PRK12476 94 RVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIA 173 (612)
T ss_pred EEEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEE
Confidence 99999999999999999999999999999 57776 78999999999999999998777665544333322 123343
Q ss_pred ecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (744)
++.... . ...........++|+++|+|||||||.||||++||+++++++......+
T Consensus 174 ~~~~~~-----------------------~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 229 (612)
T PRK12476 174 IDAIPD-----------------------S-AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI 229 (612)
T ss_pred eccccc-----------------------c-ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 322100 0 0001111234678999999999999999999999999998877766666
Q ss_pred CC-CCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccc--eEecceEEeechHHHHHHHH
Q 004568 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV--SVLKPTLMAAVPAIFDRVRE 388 (744)
Q Consensus 312 ~~-~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i--~~~~~T~l~~~P~~~~~l~~ 388 (744)
+ +.+++++++++|++|.+|+...+.+++.|+++++..+..+... +..++..+ .++++|+++.+|+++..+..
T Consensus 230 -~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~----p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~ 304 (612)
T PRK12476 230 -DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRR----PQRWIKALSEGSRTGRVVTAAPNFAYEWAA 304 (612)
T ss_pred -ccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHH----HHHHHHHHhhhccCCeEEEeCCcHHHHHHH
Confidence 6 7889999999999999999877666666666665333211100 11122226 45899999999999887764
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
....... ......+++| +++||+++++++.+.+.+.
T Consensus 305 ~~~~~~~-------------------------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~ 340 (612)
T PRK12476 305 QRGLPAE-------------------------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNKA 340 (612)
T ss_pred HhcChhh-------------------------------------------hcCcchhHhe-EEecccCCCHHHHHHHHHH
Confidence 2100000 0001124789 9999999999999999887
Q ss_pred c---CC---ceecccChhhhcccccccCCCC---------------------------CCCCccCCCcCccEEEEEecCC
Q 004568 469 M---GA---PIGQAYGLTETCAGSTFSEWDD---------------------------PSVGRVGPPVPCCYIKLVSWDE 515 (744)
Q Consensus 469 ~---g~---~i~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~~~~~v~i~d~~~ 515 (744)
+ |+ .+++.||+||++..++...+.. ...+++|+|++|++++|+|.++
T Consensus 341 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~ 420 (612)
T PRK12476 341 FAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDT 420 (612)
T ss_pred HHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCC
Confidence 7 44 4899999999986654432211 0125899999999999999544
Q ss_pred CCccCCCCCCCCcEEEEccccccccccCCCcccccccccC-----CC---------cceeEeeCcEEEEcCCCeEEEEec
Q 004568 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-----ER---------GMCWFYTGDIGQVYPDGCLEIIDR 581 (744)
Q Consensus 516 ~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-----~~---------g~gw~~TGDlg~~d~dG~l~i~GR 581 (744)
+.. +++|+.|||+++|++++.|||++|+.|++.|... .+ +.+||+|||+|+++ ||+|+|+||
T Consensus 421 g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR 496 (612)
T PRK12476 421 GAE---LPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGR 496 (612)
T ss_pred CcC---CCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEec
Confidence 665 5689999999999999999999999999998410 01 23699999999985 999999999
Q ss_pred CCCeEEcCCeeeeccHHHHHHHhc-CcCcce--EEEEecCCC--CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHH
Q 004568 582 KKDIVKLQHGEYISLGKVEAALIS-SDYVDN--IMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAE 656 (744)
Q Consensus 582 ~~d~Iki~~G~~V~p~eIE~~l~~-~p~V~~--a~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (744)
+||+||+ +|++|+|.|||++|.+ ||.|.+ ++|++.+++ +.++++|++.++.. ..
T Consensus 497 ~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~---------~~----------- 555 (612)
T PRK12476 497 IADLIVI-DGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTS---------RA----------- 555 (612)
T ss_pred cCcEEEE-CCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcc---------cc-----------
Confidence 9999997 6999999999999985 899999 777887764 46888888765310 00
Q ss_pred HHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccc-eeEEEEecC--CCCCCCCccccccccChHHHHH
Q 004568 657 AVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEI-PAKIKLMPE--PWTPEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 657 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-P~~i~~~~~--~~~p~~~~~t~~GKi~R~~l~~ 733 (744)
..+.+.+.+++ ++. +.|++ |..+++++. + | +|++|||+|++|++
T Consensus 556 ~~~~l~~~~~~-----------------------~l~----~~~~~~p~~v~~v~~~~l--P----~t~~GKi~r~~L~~ 602 (612)
T PRK12476 556 DPAPAIDAIRA-----------------------AVS----RRHGLAVADVRLVPAGAI--P----RTTSGKLARRACRA 602 (612)
T ss_pred cHHHHHHHHHH-----------------------HHH----HhhCCcceEEEEECCCCc--C----cCCchHHHHHHHHH
Confidence 01233344444 222 13666 688888874 6 8 99999999999999
Q ss_pred HHHH
Q 004568 734 KFKD 737 (744)
Q Consensus 734 ~~~~ 737 (744)
+|.+
T Consensus 603 ~~~~ 606 (612)
T PRK12476 603 QYLD 606 (612)
T ss_pred HHHc
Confidence 9864
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=582.02 Aligned_cols=495 Identities=24% Similarity=0.328 Sum_probs=398.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|+++++.+|+++|+++.+ +. .+.++.+||+||+++++++|.+|++.|+++|++|+++
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~ 84 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQ 84 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 689999999999999999998531 11 1233579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhccCCCeeEEEEecCCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++... ..+.......+..+.++..+...
T Consensus 85 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03208 85 LPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG 164 (538)
T ss_pred CCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999987542 22233333445555666654321
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCC--C-----CCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHh
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS--P-----VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (744)
. ..++.++...... + .......++++++++|||||||.||||+++|+++...+.....
T Consensus 165 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~ 229 (538)
T TIGR03208 165 D---------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229 (538)
T ss_pred C---------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence 1 1222222211100 0 0112356789999999999999999999999999999888888
Q ss_pred hCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHH
Q 004568 310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (744)
Q Consensus 310 ~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~ 385 (744)
.+ ++..+|++++++|++|..++.. .+.++..|+++++ +++..+++. ++++++|++.++|+++..
T Consensus 230 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~ 297 (538)
T TIGR03208 230 RL-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTD 297 (538)
T ss_pred hc-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence 77 8889999999999999988755 5677999999888 344455554 999999999999999988
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHH
Q 004568 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (744)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 465 (744)
+....... ....+++|.+++||+++++++.+++
T Consensus 298 l~~~~~~~-----------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~ 330 (538)
T TIGR03208 298 LCRAVKES-----------------------------------------------GAPVPSLFTFLCAGAPIPGILVERA 330 (538)
T ss_pred HHhchhcc-----------------------------------------------CCCCCcceEEEEcCCCCCHHHHHHH
Confidence 76532100 0012489999999999999999998
Q ss_pred HhhcCCceecccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 466 NICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 466 ~~~~g~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
.+.+|++++|.||+||++.+++...... ....++|+|+++++++|+| +++.. +++|+.|||+|+|++++.||++
T Consensus 331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~ 406 (538)
T TIGR03208 331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAK---LSQGETGRLLVRGCSNFGGYLK 406 (538)
T ss_pred HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCC---CcCCCCcEEEEecCcccccccC
Confidence 8888999999999999987766544322 1236899999999999998 55554 5688999999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~--- 620 (744)
+++.|.. . .+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+++
T Consensus 407 ~~~~~~~--~--~~--~~~~TGD~~~~~~~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g 479 (538)
T TIGR03208 407 RPHLNST--D--AE--GWFDTGDLAFQDAEGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLG 479 (538)
T ss_pred Ccccccc--c--CC--CceeccceEEECCCCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCC
Confidence 9988753 2 45 89999999999999999999999999996 7999999999999999999999999998765
Q ss_pred CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
+.++|+|++.++. ..+ .+.+.+ ++++.+++.|
T Consensus 480 ~~~~a~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~~~~l~~~ 511 (538)
T TIGR03208 480 ERACAVVVPKPGC----------TLD---------------FAAMVA-----------------------FLKAQKVALQ 511 (538)
T ss_pred ceEEEEEEECCCC----------CCC---------------HHHHHH-----------------------HHHhcchhhc
Confidence 3589999886531 000 123444 5553579999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLK 732 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~ 732 (744)
++|..+++++++ | +|++||++|++|+
T Consensus 512 ~~P~~i~~v~~i--P----~t~~gKv~r~~L~ 537 (538)
T TIGR03208 512 YIPERLEVVDAL--P----ATPAGKIQKFRLR 537 (538)
T ss_pred cCCcEEEEeccC--C----CCCccccchHhhc
Confidence 999999999999 8 9999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=575.89 Aligned_cols=474 Identities=27% Similarity=0.374 Sum_probs=394.9
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
++|+.+.|++++.++||++|+.+ ++ +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i 57 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL 57 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999985 22 36999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|++++++++|||+++|++++|+++..+.+++.+++++++++.+++++.....+....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------------------- 117 (483)
T PRK03640 58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-------------------- 117 (483)
T ss_pred ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--------------------
Confidence 999999999999999999999999999999999999999999999999876554332210
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
...++++...............++++++++|||||||.||+|++||.++...+......+ ++.++|++
T Consensus 118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~ 185 (483)
T PRK03640 118 -----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCW 185 (483)
T ss_pred -----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEE
Confidence 011333322211111122345678999999999999999999999999998877777777 88999999
Q ss_pred EecCChHHHHHHHHHHHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhh
Q 004568 321 LAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (744)
Q Consensus 321 l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~ 397 (744)
++.+|++|..++...+.++..|+++++.+ +..+.+. ++++++|++.++|+++..+.+...+.
T Consensus 186 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~P~~~~~l~~~~~~~---- 250 (483)
T PRK03640 186 LAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKL-----------LQTGGVTIISVVSTMLQRLLERLGEG---- 250 (483)
T ss_pred EEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCcc----
Confidence 99999999999887788899999998843 3334443 99999999999999999886531110
Q ss_pred cchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceeccc
Q 004568 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (744)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~Y 477 (744)
....++|.+++||+++++.+.+.++.. |+++++.|
T Consensus 251 --------------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~Y 285 (483)
T PRK03640 251 --------------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSY 285 (483)
T ss_pred --------------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeee
Confidence 011489999999999999999988874 99999999
Q ss_pred ChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccC
Q 004568 478 GLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD 555 (744)
Q Consensus 478 G~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~ 555 (744)
|+||++..++..... ....+++|+|+++++++|.+ + +. +++.|..|||+|+|++++.||+++++.+.+.|
T Consensus 286 G~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~-~~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--- 357 (483)
T PRK03640 286 GMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-D-GV---VVPPFEEGEIVVKGPNVTKGYLNREDATRETF--- 357 (483)
T ss_pred ccCcccccccccCcccccccCCCcccccCCcEEEEec-C-CC---cCCCCCceEEEEECcchhhhhcCCHHHHHHHH---
Confidence 999987654433332 23568999999999999987 3 33 26789999999999999999999999999988
Q ss_pred CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHH
Q 004568 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHK 632 (744)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~ 632 (744)
.+ |||+|||++++++||+++++||+||++|+ +|++|+|.+||+++.++|+|.+++|++.+++. .+++++++...
T Consensus 358 ~~--~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~ 434 (483)
T PRK03640 358 QD--GWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434 (483)
T ss_pred hc--CCeeccceEEEcCCCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC
Confidence 56 89999999999999999999999999997 69999999999999999999999999987643 47777775432
Q ss_pred HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCC
Q 004568 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEP 712 (744)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~ 712 (744)
. + .+++++ +++ ..|+.|++|..|++++++
T Consensus 435 ~------------~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~~~~i 463 (483)
T PRK03640 435 V------------T---------------EEELRH-----------------------FCE-EKLAKYKVPKRFYFVEEL 463 (483)
T ss_pred C------------C---------------HHHHHH-----------------------HHH-HhccCCCCCcEEEEeCCC
Confidence 1 0 134555 665 589999999999999998
Q ss_pred CCCCCCccccccccChHHHHHHHHH
Q 004568 713 WTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 713 ~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
| +|++||++|++|++++++
T Consensus 464 --P----~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 464 --P----RNASGKLLRHELKQLVEE 482 (483)
T ss_pred --C----CCCccceeHHHHHHHHhh
Confidence 8 999999999999999875
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=585.28 Aligned_cols=516 Identities=19% Similarity=0.304 Sum_probs=411.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i 160 (744)
.|+.++|++++..+|+++|+++ ++ .+++.+||+||.++++++|++|.+ .|+++||+|++
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~------------~~--------~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~ 69 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTW------------GG--------AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGS 69 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEE------------cC--------CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 5899999999999999999986 22 123589999999999999999986 79999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+......++..+.++..+....+..
T Consensus 70 ~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (576)
T PRK05620 70 MMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSA 149 (576)
T ss_pred EeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccc
Confidence 99999999999999999999999999999999999999999999999998887777776666666676666553221110
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH--HhhCCCCCCCc
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD 318 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d 318 (744)
....+......+|.++...... ........++++++++|||||||.||||+++|+++....... ...+ .+..+|
T Consensus 150 --~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~ 225 (576)
T PRK05620 150 --AAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGE 225 (576)
T ss_pred --hhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCC
Confidence 0011112345668887754322 222234567899999999999999999999999987655433 2235 788899
Q ss_pred EEEecCChHHHHHHHHHHHHHHhcceEEeC----CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 319 VYLAYLPLAHVLELAAESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 319 ~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~----~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
++++.+|++|.+++...+.++..|+++++. ++..+.+ .++++++|+++++|+++..++.......
T Consensus 226 ~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 294 (576)
T PRK05620 226 SFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAK-----------IIATAMPRVAHGVPTLWIQLMVHYLKNP 294 (576)
T ss_pred eEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHH-----------HHHHhcCceeeecCHHHHHHHHHhhccC
Confidence 999999999999998878889999999883 3333333 3999999999999999988765321000
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCcee
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~ 474 (744)
....++|.+++||+++++++.+.+++.+|++++
T Consensus 295 -----------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~ 327 (576)
T PRK05620 295 -----------------------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVV 327 (576)
T ss_pred -----------------------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 001379999999999999999999888899999
Q ss_pred cccChhhhcccccccCCCC--------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCc
Q 004568 475 QAYGLTETCAGSTFSEWDD--------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG 546 (744)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~--------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~ 546 (744)
+.||+||++..++...... ....++|++.++++++++| + +..+. .+++..|||+++|++++.|||++++
T Consensus 328 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~~ 404 (576)
T PRK05620 328 HVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSPT 404 (576)
T ss_pred eeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCcc
Confidence 9999999987765543221 1124789999999999998 4 44332 3456789999999999999999999
Q ss_pred cc----ccccccC----------CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceE
Q 004568 547 KT----SEVYKVD----------ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNI 612 (744)
Q Consensus 547 ~t----~~~f~~~----------~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a 612 (744)
.+ ...|..+ .+ |||+|||+|++++||+++|+||.||+||+ +|++|+|.+||++|.+||.|.+|
T Consensus 405 ~t~~~~~~~f~~~~~~~~~~~~~~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~ 481 (576)
T PRK05620 405 EEGGGAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVEC 481 (576)
T ss_pred ccccccccccccccchhhhcccccC--CcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEE
Confidence 88 3333210 34 89999999999999999999999999996 69999999999999999999999
Q ss_pred EEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhH
Q 004568 613 MIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL 689 (744)
Q Consensus 613 ~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 689 (744)
+|++.++.. .++|+|++.++. ... +...++|++
T Consensus 482 ~vv~~~~~~~g~~~~a~v~~~~~~----------~~~------------~~~~~~l~~---------------------- 517 (576)
T PRK05620 482 AVIGYPDDKWGERPLAVTVLAPGI----------EPT------------RETAERLRD---------------------- 517 (576)
T ss_pred EEEeccCCCcCceeEEEEEecCCC----------Ccc------------cccHHHHHH----------------------
Confidence 999988754 488888876532 000 001245666
Q ss_pred HHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 690 QVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 690 ~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+++ .+|+.|++|+.|++++++ | +|.+||++|++|++++++
T Consensus 518 -~l~-~~L~~~~~P~~i~~v~~~--P----~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 518 -QLR-DRLPNWMLPEYWTFVDEI--D----KTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred -HHH-hhCccccCCeEEEEeccC--C----CCCcccCcHHHHHHHHhc
Confidence 666 699999999999999999 8 999999999999999885
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=582.17 Aligned_cols=502 Identities=21% Similarity=0.278 Sum_probs=399.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...|+.++|.++++++|+++|+.+.. ++ +.+||+||.++++++|+.|.+.|+++||+|
T Consensus 25 ~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V 83 (546)
T PLN02330 25 PDKLTLPDFVLQDAELYADKVAFVEAV----------TG-----------KAVTYGEVVRDTRRFAKALRSLGLRKGQVV 83 (546)
T ss_pred CCCCcHHHHHhhhhhcCCCccEEEecC----------CC-----------CcccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 445789999999999999999997521 23 269999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++++++.....+.... +. ++.++...
T Consensus 84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i~~~~~~-- 155 (546)
T PLN02330 84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VIVLGEEK-- 155 (546)
T ss_pred EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EEEecCCC--
Confidence 99999999999999999999999999999999999999999999999999988776654321 12 33333211
Q ss_pred cCCCccCCCCCceEeeHHHHHHcCCCCCC--CCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC-CCCC
Q 004568 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG 315 (744)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~ 315 (744)
......|++++........ ......++++++|+|||||||.||||+++|+++...+....... +...
T Consensus 156 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 225 (546)
T PLN02330 156 ----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMI 225 (546)
T ss_pred ----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCcccc
Confidence 0122346666543322111 12334578999999999999999999999999988765432212 1223
Q ss_pred CCcEEEecCChHHHHHHHHH-HHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 316 RSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 316 ~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
..++.+.++|++|.+++... +.++..|+++++ +++..+++. ++++++|++.++|+++..+.+...
T Consensus 226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~ 294 (546)
T PLN02330 226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNA-----------LITQEVSFAPIVPPIILNLVKNPI 294 (546)
T ss_pred CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHH-----------HHHcCCeeeecCCHHHHHHHhCcc
Confidence 45789999999999998654 566889999888 344444444 999999999999999998865210
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-C
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-G 470 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g 470 (744)
. .. .. +. ..++|.+++||+++++++.+++.+.+ |
T Consensus 295 ~--~~---------------------------~~----------~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~ 329 (546)
T PLN02330 295 V--EE---------------------------FD----------LS------KLKLQAIMTAAAPLAPELLTAFEAKFPG 329 (546)
T ss_pred c--cc---------------------------cc----------cc------hheeeeEEEcCCcCCHHHHHHHHHHcCC
Confidence 0 00 00 00 01589999999999999999999888 8
Q ss_pred CceecccChhhhcccccccC-CC----CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCC
Q 004568 471 APIGQAYGLTETCAGSTFSE-WD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545 (744)
Q Consensus 471 ~~i~~~YG~TE~~~~~~~~~-~~----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~ 545 (744)
+++++.||+||++.+..... .. ....+++|+|+++++++|+|++++.. +++|+.|||+|+|++++.||++++
T Consensus 330 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~---~p~g~~Gel~v~g~~~~~gy~~~~ 406 (546)
T PLN02330 330 VQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRS---LPKNTPGELCVRSQCVMQGYYNNK 406 (546)
T ss_pred CeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCcc---CCCCCceEEEEecchhhhhhccCc
Confidence 99999999999976543321 11 12346899999999999999666654 568999999999999999999999
Q ss_pred cccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---Ce
Q 004568 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NY 622 (744)
Q Consensus 546 ~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~ 622 (744)
+.+++.|. .+ |||+|||+|++++||+++++||.+|+||+ +|++|+|.+||++|.+||.|.+++|++.+++ ..
T Consensus 407 ~~~~~~~~--~~--g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 481 (546)
T PLN02330 407 EETDRTID--ED--GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481 (546)
T ss_pred cchhhhcc--CC--CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCce
Confidence 99998875 45 89999999999999999999999999997 5999999999999999999999999998765 35
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccc
Q 004568 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEI 702 (744)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 702 (744)
++|+|++.++. .. + . ++|++ +++ .+|+.|++
T Consensus 482 ~~a~v~~~~~~----------~~--------~---~----~~l~~-----------------------~~~-~~l~~~~~ 512 (546)
T PLN02330 482 PAACVVINPKA----------KE--------S---E----EDILN-----------------------FVA-ANVAHYKK 512 (546)
T ss_pred eEEEEEECCCC----------CC--------C---H----HHHHH-----------------------HHH-HhcccccC
Confidence 88888876531 00 0 1 34555 555 58999999
Q ss_pred eeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 703 PAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 703 P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
|+.+++++++ | +|++||++|++|++++...
T Consensus 513 p~~~~~v~~i--P----~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 513 VRVVQFVDSI--P----KSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred ceEEEEeccC--C----CCCCcceeHHHHHHHHHhh
Confidence 9999999999 8 9999999999999999765
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-65 Score=577.95 Aligned_cols=509 Identities=21% Similarity=0.268 Sum_probs=403.4
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.++|+++++++|++.++.++. + ++++.+||.||.++++++|++|.+.|+++||+|+++
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~ 70 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRV----------E---------GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL 70 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeec----------c---------CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 579999999999999998886531 1 223579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.++....+.++.++.........
T Consensus 71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (539)
T PRK07008 71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP-- 148 (539)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc--
Confidence 999999999999999999999999999999999999999999999999888777766666666666666554332110
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH--HHhhCCCCCCCcE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA--IKTLIPNPGRSDV 319 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~~d~ 319 (744)
. ......+++++....... .......++++++++|||||||.||+|++||++++..... ....+ ++.++|+
T Consensus 149 ---~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~ 221 (539)
T PRK07008 149 ---A--GSTPLLCYETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDA 221 (539)
T ss_pred ---c--CCcccccHHHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCce
Confidence 0 012355677765433221 1123456788999999999999999999999998754332 22345 7888999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
+++.+|++|..++...+.++..|+++++.++.. + ...++..++++++|++.++|+++..+.+.....
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------ 288 (539)
T PRK07008 222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDL--D-----GKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------ 288 (539)
T ss_pred EEecCchHHhhhHHHHHHHHhcCceEEEecCCc--C-----HHHHHHHHHHcCCEEEEechHHHHHHHhccccc------
Confidence 999999999888766677789999998843211 1 112233399999999999999999887532110
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccCh
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~ 479 (744)
....+++|.+++||+++++++.+.+.+.+|+++++.||+
T Consensus 289 -----------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~ 327 (539)
T PRK07008 289 -----------------------------------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGM 327 (539)
T ss_pred -----------------------------------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccc
Confidence 011258999999999999999999988899999999999
Q ss_pred hhhcccccccCCCC-----------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccc
Q 004568 480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (744)
Q Consensus 480 TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (744)
||++..++...... ....++|+|+|+++++|+| +++..++ ...++.|||+++|+.++.||+++++
T Consensus 328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~~-- 403 (539)
T PRK07008 328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRGDA-- 403 (539)
T ss_pred ccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCChh--
Confidence 99987655432110 1136899999999999999 5555432 1223579999999999999999983
Q ss_pred ccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEE
Q 004568 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (744)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A 625 (744)
..+ .+ |||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||.|.+++|++.++. ..+++
T Consensus 404 -~~~---~~--g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~ 476 (539)
T PRK07008 404 -SPL---VD--GWFPTGDVATIDADGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLL 476 (539)
T ss_pred -hhh---cC--CCcccCceEEEcCCCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEE
Confidence 334 34 89999999999999999999999999996 7999999999999999999999999998865 34788
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeE
Q 004568 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAK 705 (744)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~ 705 (744)
+|+..++. ..+ .+++++ +++ .+|++|++|+.
T Consensus 477 ~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~P~~ 507 (539)
T PRK07008 477 VVVKRPGA----------EVT---------------REELLA-----------------------FYE-GKVAKWWIPDD 507 (539)
T ss_pred EEEeCCCC----------ccC---------------HHHHHH-----------------------HHH-hhcccccCCeE
Confidence 88766431 000 135555 666 58999999999
Q ss_pred EEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 706 IKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 706 i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
|++++++ | +|++||++|++|++++.+-
T Consensus 508 i~~v~~l--P----~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 508 VVFVDAI--P----HTATGKLQKLKLREQFRDY 534 (539)
T ss_pred EEEecCC--C----CCCccceeHHHHHHHHHhh
Confidence 9999999 8 9999999999999988763
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=577.35 Aligned_cols=498 Identities=24% Similarity=0.344 Sum_probs=414.9
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+.++.++|++.++.+|+++|+.+ +++ .+||+||.+++.++|+.|.+.|+++||+|++
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l 60 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVAI 60 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 443 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++.............+.++.++.........
T Consensus 61 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (513)
T PRK07656 61 WAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP- 139 (513)
T ss_pred ECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc-
Confidence 9999999999999999999999999999999999999999999999999887766666555566666666654432111
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
......+|+++...... ........++++++|+|||||||.||+|.++|+++...+......+ ++.++|++
T Consensus 140 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 210 (513)
T PRK07656 140 -------HTEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRY 210 (513)
T ss_pred -------CccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeE
Confidence 00123456766544322 1223445778999999999999999999999999999888887777 89999999
Q ss_pred EecCChHHHHHHHH-HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 321 LAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 321 l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
++.+|++|.+++.. .+.++..|+++++. ++..+++. ++++++|++.++|+++..+.+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~--- 276 (513)
T PRK07656 211 LAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRL-----------IETERITVLPGPPTMYNSLLQHPDRS--- 276 (513)
T ss_pred EEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHH-----------HHHhCCeEEechHHHHHHHHcCCCcC---
Confidence 99999999999876 45679999999883 34444444 99999999999999999987531100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC-ceec
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQ 475 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~i~~ 475 (744)
....+++|.+++||+++++++.+.+.+.+++ ++++
T Consensus 277 --------------------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
T PRK07656 277 --------------------------------------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT 312 (513)
T ss_pred --------------------------------------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence 0012589999999999999999999998998 8999
Q ss_pred ccChhhhcccccccCCCCC-C--CCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccccccc
Q 004568 476 AYGLTETCAGSTFSEWDDP-S--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~~-~--~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f 552 (744)
.||+||++++++.+..... . .+++|.|+++++++|+| +++.. ++.|+.|||+++|+.++.||+++++.+...|
T Consensus 313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 388 (513)
T PRK07656 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEE---VPVGEVGELLVRGPNVMKGYYDDPEATAAAI 388 (513)
T ss_pred EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCC---CCCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence 9999999888776654432 2 57999999999999999 55554 5688999999999999999999999998887
Q ss_pred ccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 004568 553 KVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVP 629 (744)
Q Consensus 553 ~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~ 629 (744)
. .+ |||+|||+|+++++|+++++||.||+||+ +|++|+|.+||++|.++|+|.+++|++.++. ..++|+|++
T Consensus 389 ~--~~--~~~~tGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~ 463 (513)
T PRK07656 389 D--AD--GWLHTGDLGRLDEEGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVL 463 (513)
T ss_pred c--cC--CceeccceEEEcCCeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEE
Confidence 4 35 89999999999999999999999999997 6999999999999999999999999998755 357889887
Q ss_pred CHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEe
Q 004568 630 SHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLM 709 (744)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~ 709 (744)
++.. ..+ .++|.+ +++ ..|+.|++|..++++
T Consensus 464 ~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~v 494 (513)
T PRK07656 464 KPGA----------ELT---------------EEELIA-----------------------YCR-EHLAKYKVPRSIEFL 494 (513)
T ss_pred CCCC----------CCC---------------HHHHHH-----------------------HHH-hhcccccCCCEEEEe
Confidence 6421 000 134555 666 589999999999999
Q ss_pred cCCCCCCCCccccccccChHHHHH
Q 004568 710 PEPWTPEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 710 ~~~~~p~~~~~t~~GKi~R~~l~~ 733 (744)
+++ | +|++||++|++|++
T Consensus 495 ~~i--P----~t~~gK~~r~~l~~ 512 (513)
T PRK07656 495 DEL--P----KNATGKVLKRALRE 512 (513)
T ss_pred cCC--C----CCCccceeHHHHhc
Confidence 998 8 99999999999875
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=582.68 Aligned_cols=513 Identities=23% Similarity=0.333 Sum_probs=408.0
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|+++++++|+++|+++ +++ .+||+||.++++++|+.|.+.|+++||+|+++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~ 88 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIV 88 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5899999999999999999987 443 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc-C
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-D 240 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~ 240 (744)
++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+..+.... ..+.++.++...... .
T Consensus 89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 167 (573)
T PRK05605 89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL 167 (573)
T ss_pred CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999887766555443322 233344333111000 0
Q ss_pred CC---------cc-----CCCCCceEeeHHHHHHcCCCC---CCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH
Q 004568 241 SG---------VS-----GGISNWTVSSFSEVEKLGKRS---PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303 (744)
Q Consensus 241 ~~---------~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~ 303 (744)
.. +. .........+|.++....... ........++++++++|||||||.||+|++||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~ 247 (573)
T PRK05605 168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247 (573)
T ss_pred cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence 00 00 000012334566665432211 01123456789999999999999999999999999888
Q ss_pred HHHHHhhCCCC-CCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEee
Q 004568 304 AAAIKTLIPNP-GRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378 (744)
Q Consensus 304 ~~~~~~~~~~~-~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~ 378 (744)
+......+.++ ..++++++.+|++|.+|+... +.++..|+++++. ++..+.+. ++++++|++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~ 316 (573)
T PRK05605 248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA-----------MKKHPPTWLPG 316 (573)
T ss_pred HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCEEEEc
Confidence 77655443222 347899999999999998654 4568899998883 33344443 99999999999
Q ss_pred chHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCC
Q 004568 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458 (744)
Q Consensus 379 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~ 458 (744)
+|++++.+.+..... ....+++|.+++||++++
T Consensus 317 ~P~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~i~~gg~~l~ 349 (573)
T PRK05605 317 VPPLYEKIAEAAEER-----------------------------------------------GVDLSGVRNAFSGAMALP 349 (573)
T ss_pred hHHHHHHHHhCcccc-----------------------------------------------CCCchhccEEEECCCcCC
Confidence 999999987632110 001147999999999999
Q ss_pred HHHHHHHHhhcCCceecccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCC-CCccCCCCCCCCcEEEEcccc
Q 004568 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDE-GGYKTSDKPMPRGEIVVGGFN 536 (744)
Q Consensus 459 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~-~~~~~~~~~g~~GEl~v~g~~ 536 (744)
+++.+.+.+.+++++++.||+||++++++..... ....+++|+|++++.++|+|+++ +.. ++.|+.|||+++|+.
T Consensus 350 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~~g~~Gel~v~~~~ 426 (573)
T PRK05605 350 VSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDET---MPDGEEGELLVRGPQ 426 (573)
T ss_pred HHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCcc---CCCCCeeEEEEecCc
Confidence 9999999988899999999999999877665443 23457999999999999999554 333 568899999999999
Q ss_pred ccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEe
Q 004568 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616 (744)
Q Consensus 537 v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g 616 (744)
++.||+++++.+.+.| .+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.+||++|.+||.|.+++|++
T Consensus 427 ~~~gy~~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~ 500 (573)
T PRK05605 427 VFKGYWNRPEETAKSF---LD--GWFRTGDVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVG 500 (573)
T ss_pred hhhhhcCChhHhhhcc---cC--CCcccCCEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEe
Confidence 9999999999999988 56 79999999999999999999999999996 799999999999999999999999999
Q ss_pred cCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHH
Q 004568 617 DPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAK 693 (744)
Q Consensus 617 ~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (744)
.++. +.++++|+++++. ..+ . ++|++ +++
T Consensus 501 ~~~~~~~~~~~~~vv~~~~~----------~~~-----------~----~~l~~-----------------------~~~ 532 (573)
T PRK05605 501 LPREDGSEEVVAAVVLEPGA----------ALD-----------P----EGLRA-----------------------YCR 532 (573)
T ss_pred eecccCCeEEEEEEEECCCC----------CCC-----------H----HHHHH-----------------------HHH
Confidence 8654 4688888877531 000 1 34555 555
Q ss_pred hcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 694 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 694 ~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
.+|+.|++|..|++++++ | +|.+||++|++|++++.+++.
T Consensus 533 -~~l~~~~~p~~i~~~~~i--P----~t~~GKi~r~~L~~~~~~~~~ 572 (573)
T PRK05605 533 -EHLTRYKVPRRFYHVDEL--P----RDQLGKVRRREVREELLEKLG 572 (573)
T ss_pred -HhCccccCCcEEEEeccC--C----CCCcccccHHHHHHHHHHHhc
Confidence 589999999999999998 8 999999999999999987654
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=578.11 Aligned_cols=503 Identities=23% Similarity=0.312 Sum_probs=411.6
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|.++++++|+++|+++ ++. .+||+||.+++.++|..|.+.|+++||+|++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l 66 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA 66 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++......+......... ..+........
T Consensus 67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--- 142 (523)
T PRK08316 67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLGG--- 142 (523)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeecccc---
Confidence 99999999999999999999999999999999999999999999999999887766655433331 11111111100
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
.........++++....... ........+++++++|||||||.||+|.+||++++..+......+ ++.++|++
T Consensus 143 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 215 (523)
T PRK08316 143 -----REAPGGWLDFADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIP 215 (523)
T ss_pred -----cccccchhhHHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceE
Confidence 00112334455554432221 123456778999999999999999999999999999888877777 89999999
Q ss_pred EecCChHHHHHHHHHH-HHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 321 LAYLPLAHVLELAAES-IMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 321 l~~~Pl~h~~g~~~~~-~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
++.+|++|..++...+ .++..|+++++. ++..+++ .++++++|++.++|+++..+.++...
T Consensus 216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~---- 280 (523)
T PRK08316 216 LHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILR-----------TIEAERITSFFAPPTVWISLLRHPDF---- 280 (523)
T ss_pred EEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHH-----------HHHHhCCeEEEeCHHHHHHHHcCccc----
Confidence 9999999999986644 468899999884 3333333 39999999999999999888653110
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceec
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~ 475 (744)
.....+++|.+++||++++.++.+.+++.+ ++++++
T Consensus 281 -------------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 317 (523)
T PRK08316 281 -------------------------------------------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYN 317 (523)
T ss_pred -------------------------------------------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceee
Confidence 011125899999999999999999999877 789999
Q ss_pred ccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccc
Q 004568 476 AYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (744)
.||+||++.+++...... ...+++|+|+++++++|+| +++.. ++.|+.|||+++|++++.||+++++.+++.|
T Consensus 318 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~- 392 (523)
T PRK08316 318 CYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGND---VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF- 392 (523)
T ss_pred eecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCC---CCCCCcceEEEECCchhhhhcCCHHHHHHHh-
Confidence 999999998776654332 3457999999999999999 55654 5578999999999999999999999999988
Q ss_pred cCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcC
Q 004568 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPS 630 (744)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~ 630 (744)
.+ |||+|||+|++++||+++++||.||+||+ +|++|+|.+||+.|.++|+|.+++|++.+++. .++++++++
T Consensus 393 --~~--~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 467 (523)
T PRK08316 393 --RG--GWFHSGDLGVMDEEGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPK 467 (523)
T ss_pred --hC--CCeeccceEEEcCCceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEEC
Confidence 66 89999999999999999999999999997 69999999999999999999999999987654 488888887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec
Q 004568 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710 (744)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~ 710 (744)
++. ... . +.+.+ +++ .+|+.|++|..+++++
T Consensus 468 ~~~----------~~~-----------~----~~l~~-----------------------~~~-~~l~~~~~p~~i~~v~ 498 (523)
T PRK08316 468 AGA----------TVT-----------E----DELIA-----------------------HCR-ARLAGFKVPKRVIFVD 498 (523)
T ss_pred CCC----------CCC-----------H----HHHHH-----------------------HHH-HhcccCCCCcEEEEec
Confidence 532 000 1 23444 554 4899999999999999
Q ss_pred CCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 711 EPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 711 ~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
++ | +|++||++|++|+++|++.++
T Consensus 499 ~~--p----~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 499 EL--P----RNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred CC--C----CCCccceeHHHHHHHHHhhcc
Confidence 98 8 999999999999999998875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=577.02 Aligned_cols=500 Identities=19% Similarity=0.251 Sum_probs=399.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..||.++|+++++++|+++|+.+. |+. ++++.+||+||.++++++|+.|.++|+++||+|++
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-------~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i 67 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE-----------SSG-------GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL 67 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc-----------cCC-------CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 468999999999999999999874 322 34468999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccC-CCeeEEEEecCCCCCc
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSL-KTIKNVIYFENDGSEK 239 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~ 239 (744)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++.++++++..+.+.++.... ..++.++..+.....
T Consensus 68 ~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (517)
T PRK08008 68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA- 146 (517)
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc-
Confidence 999999999999999999999999999999999999999999999999998777666654332 334555554432111
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
.....++++................++++++|+|||||||.||+|++||++++.......... .+..+++
T Consensus 147 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~ 216 (517)
T PRK08008 147 ---------DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV 216 (517)
T ss_pred ---------cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence 012334454433222111112344678999999999999999999999999986654333333 6788999
Q ss_pred EEecCChHHHHHHHH-HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHH
Q 004568 320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~ 395 (744)
+++.+|++|..+... .+.++..|+++++. ++..+++ .++++++|++.++|++++.+........
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~~~- 284 (517)
T PRK08008 217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWG-----------QVCKYRATITECIPMMIRTLMVQPPSAN- 284 (517)
T ss_pred EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHH-----------HHHHcCCcEEechHHHHHHHHhCCCccc-
Confidence 999999999876654 45678899999884 3333333 3999999999999999988764210000
Q ss_pred hhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceec
Q 004568 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (744)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~ 475 (744)
...++++.++++ .+++++....+.+.+|+++++
T Consensus 285 ----------------------------------------------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (517)
T PRK08008 285 ----------------------------------------------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLT 317 (517)
T ss_pred ----------------------------------------------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEe
Confidence 001357777665 478888888888888999999
Q ss_pred ccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcc---ccccccccCCCcccccc
Q 004568 476 AYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG---FNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g---~~v~~gY~~~~~~t~~~ 551 (744)
.||+||++..++..... ....+++|.|+++++++|+| +++.. ++.|+.|||+++| ++++.|||++++.|++.
T Consensus 318 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~ 393 (517)
T PRK08008 318 SYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRP---LPAGEIGEICIKGVPGKTIFKEYYLDPKATAKV 393 (517)
T ss_pred eccccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCC---CCCCCcceEEEeCCCCcchhhhHhCChHHHhhc
Confidence 99999998765544332 23457899999999999999 56655 5688999999998 68999999999999999
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv 628 (744)
|. .+ |||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||.|.+|+|+|.++. ..+.++|+
T Consensus 394 ~~--~~--g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~ 468 (517)
T PRK08008 394 LE--AD--GWLHTGDTGYVDEEGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVV 468 (517)
T ss_pred cc--CC--CCeeccceEEECCCCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEE
Confidence 86 56 89999999999999999999999999997 6999999999999999999999999998865 35899999
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEE
Q 004568 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKL 708 (744)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~ 708 (744)
++++. +.+ .++|.+ +++ .+|+.|++|..+++
T Consensus 469 ~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~P~~~~~ 499 (517)
T PRK08008 469 LNEGE----------TLS---------------EEEFFA-----------------------FCE-QNMAKFKVPSYLEI 499 (517)
T ss_pred ECCCC----------CCC---------------HHHHHH-----------------------HHH-hhcccccCCcEEEE
Confidence 87532 000 135555 666 58999999999999
Q ss_pred ecCCCCCCCCccccccccChHHHH
Q 004568 709 MPEPWTPEAGLVTAALKIKREQLK 732 (744)
Q Consensus 709 ~~~~~~p~~~~~t~~GKi~R~~l~ 732 (744)
++++ | +|++||++|+.|+
T Consensus 500 v~~i--P----~t~~gK~~r~~l~ 517 (517)
T PRK08008 500 RKDL--P----RNCSGKIIKKNLK 517 (517)
T ss_pred eccC--C----CCCccceehhhcC
Confidence 9999 8 9999999999874
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=578.01 Aligned_cols=505 Identities=22% Similarity=0.311 Sum_probs=407.4
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|+.++|+++++++||++|+++. +|+ .+||+||.++++++|+.|++.|+++||+|+
T Consensus 21 ~~~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~ 78 (547)
T PRK06087 21 GDASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVA 78 (547)
T ss_pred CCCCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3468999999999999999999752 333 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh-----hhHHHHhhccCCCeeEEEEecC
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEN 234 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~ 234 (744)
++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++... .+.+.......+..+.++.++.
T Consensus 79 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (547)
T PRK06087 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK 158 (547)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999997632 3444444455566666666654
Q ss_pred CCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC
Q 004568 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (744)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (744)
.... ....++.++........ ......++++++|+|||||||.||+|++||.+++.........+ ++
T Consensus 159 ~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~ 225 (547)
T PRK06087 159 LAPA-----------TSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NL 225 (547)
T ss_pred cCCC-----------cCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CC
Confidence 3211 11224455443322111 12345678999999999999999999999999998888777777 88
Q ss_pred CCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
.++|++++.+|++|.+++... +.++..|+++++. ++..+++. ++++++|+++++|+.+..+++..
T Consensus 226 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~~l~~~ 294 (547)
T PRK06087 226 TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLAL-----------LEQQRCTCMLGATPFIYDLLNLL 294 (547)
T ss_pred CCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCCEEeccHHHHHHHHhcc
Confidence 999999999999999998654 5668889999884 33344444 99999999998877776665421
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g 470 (744)
.. ....++++|.+++||+++++++.+.+... |
T Consensus 295 ~~-----------------------------------------------~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~ 326 (547)
T PRK06087 295 EK-----------------------------------------------QPADLSALRFFLCGGTTIPKKVARECQQR-G 326 (547)
T ss_pred cc-----------------------------------------------CCCCCCCeEEEEEcCCCCCHHHHHHHHHc-C
Confidence 10 00112589999999999999998888775 9
Q ss_pred CceecccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccc
Q 004568 471 APIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (744)
Q Consensus 471 ~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (744)
+++++.||+||+++......... ...+++|+|++++.++++| +++.. +++|+.|||+++|++++.||+++++.+
T Consensus 327 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~ 402 (547)
T PRK06087 327 IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKT---LPPGCEGEEASRGPNVFMGYLDEPELT 402 (547)
T ss_pred CcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCC---CcCCCcceEEEecccccccccCCHHHH
Confidence 99999999999987765443221 2346789999999999998 56654 568999999999999999999999999
Q ss_pred ccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEE
Q 004568 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVA 625 (744)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A 625 (744)
...|. .+ |||+|||+|++|++|+++++||.+|+|++ +|++|+|.+||++|.++|+|.+++|++.+++. .+++
T Consensus 403 ~~~~~--~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 477 (547)
T PRK06087 403 ARALD--EE--GWYYSGDLCRMDEAGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCA 477 (547)
T ss_pred HHHhC--CC--CCcCcCceEEECCCCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEE
Confidence 88885 45 89999999999999999999999999996 79999999999999999999999999987653 5888
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeE
Q 004568 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAK 705 (744)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~ 705 (744)
+|++.+.. ...+ . +++.+ ++++..++.|++|..
T Consensus 478 ~v~~~~~~---------~~~~-----------~----~~~~~-----------------------~~~~~~l~~~~~P~~ 510 (547)
T PRK06087 478 YVVLKAPH---------HSLT-----------L----EEVVA-----------------------FFSRKRVAKYKYPEH 510 (547)
T ss_pred EEEECCCC---------CCCC-----------H----HHHHH-----------------------HHHhccccccCCCeE
Confidence 88876421 0000 1 23333 443368999999999
Q ss_pred EEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 706 IKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 706 i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
|.+++++ | +|.+||++|++|++.+.+.+.
T Consensus 511 i~~v~~i--P----~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 511 IVVIDKL--P----RTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred EEEeccC--C----CCCCCcCcHHHHHHHHHHHhh
Confidence 9999999 8 999999999999999988764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=579.65 Aligned_cols=505 Identities=24% Similarity=0.349 Sum_probs=407.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..||.++|.+.++++|+++|+++. ++. +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i 73 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYR-----------DQG----------LRWTYREFNEEVDALAKGLLALGIEKGDRVGI 73 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEc-----------CCC----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 368999999999999999999864 222 46999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhccC------------
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSL------------ 223 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~------------ 223 (744)
+++|++++++++|||+++|++++|+++.++.+++..+++.+++++++++.... ..+.....++
T Consensus 74 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (559)
T PRK08315 74 WAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSAR 153 (559)
T ss_pred ECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999987542 1222221111
Q ss_pred -CCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCC-----CCCCCCCCCCeEEEEecCCCCCcchhhhhch
Q 004568 224 -KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP-----VDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297 (744)
Q Consensus 224 -~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh 297 (744)
+..+.++.++... ......++++........ .......++++++++|||||||.||+|.+||
T Consensus 154 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~ 221 (559)
T PRK08315 154 LPELRRVIFLGDEK------------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTH 221 (559)
T ss_pred CCCceeEEeecccC------------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeH
Confidence 2334444443221 112344555543321111 1122345788999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEe----CCcccccccchhhccCccccceEec
Q 004568 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVLK 372 (744)
Q Consensus 298 ~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~----~~~~~~~~~~~~~~~~~~~~i~~~~ 372 (744)
++++..+......+ ++.++|+++..+|++|.+++... +.++..|+++++ +++..+++. +++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------l~~~~ 289 (559)
T PRK08315 222 RNILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA-----------VEEER 289 (559)
T ss_pred HHHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHcC
Confidence 99999888888877 89999999999999999998654 567899999985 344444444 99999
Q ss_pred ceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEE
Q 004568 373 PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC 452 (744)
Q Consensus 373 ~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~ 452 (744)
+|++.++|+++..++..... .....++||.+++
T Consensus 290 ~t~~~~~P~~~~~~~~~~~~-----------------------------------------------~~~~~~~lr~~~~ 322 (559)
T PRK08315 290 CTALYGVPTMFIAELDHPDF-----------------------------------------------ARFDLSSLRTGIM 322 (559)
T ss_pred CeEEecchHHHHHHHhCccc-----------------------------------------------CCCCchhhheeEe
Confidence 99999999999877642110 0011248999999
Q ss_pred ecCCCCHHHHHHHHhhcCCc-eecccChhhhcccccccCCCC---CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCc
Q 004568 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528 (744)
Q Consensus 453 gG~~l~~~~~~~~~~~~g~~-i~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~G 528 (744)
||+++++++.+.+.+.++.. +++.||+||++.+++...... .+..++|+|+++++++|+|++++.. ++.|+.|
T Consensus 323 ~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~G 399 (559)
T PRK08315 323 AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET---VPRGEQG 399 (559)
T ss_pred cCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc---CCCCCce
Confidence 99999999999888888654 999999999988766544322 2467999999999999999655654 5689999
Q ss_pred EEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcC
Q 004568 529 EIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608 (744)
Q Consensus 529 El~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~ 608 (744)
||+|+|++++.|||++++.+++.|. .+ +||+|||+|++|+||+++|+||.+|+||+ +|++|+|.|||++|.++|+
T Consensus 400 El~v~g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~ 474 (559)
T PRK08315 400 ELCTRGYSVMKGYWNDPEKTAEAID--AD--GWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPK 474 (559)
T ss_pred EEEEECchhhhhhcCChhHHhhcCC--CC--CCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCC
Confidence 9999999999999999999988885 45 89999999999999999999999999997 6999999999999999999
Q ss_pred cceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchh
Q 004568 609 VDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKT 685 (744)
Q Consensus 609 V~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 685 (744)
|.+++|++.+++ ..++++|++.++. ..+ .+++++
T Consensus 475 v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~---------------~~~l~~------------------ 511 (559)
T PRK08315 475 IQDVQVVGVPDEKYGEEVCAWIILRPGA----------TLT---------------EEDVRD------------------ 511 (559)
T ss_pred ceEEEEEecCCCCCCeEEEEEEEeCCCC----------CCC---------------HHHHHH------------------
Confidence 999999998765 3588888876431 000 134555
Q ss_pred hhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 686 TLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 686 ~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+++ .+|+.|++|..|++++++ | +|++||++|.+|++++.+.+.
T Consensus 512 -----~l~-~~l~~~~~P~~i~~v~~l--P----~t~~GK~~r~~L~~~~~~~~~ 554 (559)
T PRK08315 512 -----FCR-GKIAHYKIPRYIRFVDEF--P----MTVTGKIQKFKMREMMIEELG 554 (559)
T ss_pred -----HHH-hhcccccCCcEEEEcccC--C----CCCCCceeHHHHHHHHHhhhc
Confidence 555 589999999999999998 8 999999999999999877654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=569.56 Aligned_cols=493 Identities=24% Similarity=0.376 Sum_probs=401.6
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.+|.+++.+++ .+|+++|+... +++ .+||+||.++++++|+.|++.|+++||+|+++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~ 59 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ 59 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 68999999999 99999999752 333 79999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++.....+....... ....++.++....
T Consensus 60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 134 (504)
T PRK07514 60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT---- 134 (504)
T ss_pred CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc----
Confidence 99999999999999999999999999999999999999999999999988776665543322 2222333332211
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
..+.+.... ...........++++++|+|||||||.||+|++||+++...+......+ ++.++|+++
T Consensus 135 -----------~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l 201 (504)
T PRK07514 135 -----------GSLLEAAAA-APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLI 201 (504)
T ss_pred -----------ccHHHhhhh-cCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEE
Confidence 111121111 1111122345678999999999999999999999999999988877777 888999999
Q ss_pred ecCChHHHHHHHH-HHHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhh
Q 004568 322 AYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK 397 (744)
Q Consensus 322 ~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~ 397 (744)
+.+|++|..++.. .+.++..|+++++.+ +..+.+. + .++|++.++|.++..++....
T Consensus 202 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~------ 262 (504)
T PRK07514 202 HALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL-----------M--PRATVMMGVPTFYTRLLQEPR------ 262 (504)
T ss_pred EecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHH-----------H--HhheeeecHHHHHHHHHcCCC------
Confidence 9999999999865 456799999998843 3333332 5 479999999999988764210
Q ss_pred cchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceeccc
Q 004568 398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY 477 (744)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~Y 477 (744)
......+++|.+++||+++++++.+.+.+.+++++++.|
T Consensus 263 -----------------------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~Y 301 (504)
T PRK07514 263 -----------------------------------------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERY 301 (504)
T ss_pred -----------------------------------------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeec
Confidence 000112589999999999999999999998999999999
Q ss_pred ChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCC
Q 004568 478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (744)
Q Consensus 478 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (744)
|+||++..++.........+++|.|+++++++|+|++++.. ++.|+.|||+|+|++++.||+++++.+++.|. .+
T Consensus 302 G~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~ 376 (504)
T PRK07514 302 GMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAE---LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFR--AD 376 (504)
T ss_pred ccccccccccCCccccccCcccccCCCCcEEEEEECCCCCC---CCCCCceEEEEecCCccccccCCchhhhhhcc--cC
Confidence 99999876554333334457899999999999999666655 56889999999999999999999999999985 45
Q ss_pred cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHH
Q 004568 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKAL 634 (744)
Q Consensus 558 g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~ 634 (744)
+||+|||+|+++++|+++++||.||+||+ +|++|+|.+||++|.++|+|.+++|++.+++ ..+++++++.++.
T Consensus 377 --~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~- 452 (504)
T PRK07514 377 --GFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGA- 452 (504)
T ss_pred --CCeeecceEEEcCCccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCC-
Confidence 89999999999999999999999999997 6999999999999999999999999998764 3588999876532
Q ss_pred HHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCC
Q 004568 635 EKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWT 714 (744)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~ 714 (744)
..+ . +++++ +++ .+|++|++|..+++++++
T Consensus 453 ---------~~~-----------~----~~l~~-----------------------~~~-~~l~~~~~p~~i~~v~~~-- 482 (504)
T PRK07514 453 ---------ALD-----------E----AAILA-----------------------ALK-GRLARFKQPKRVFFVDEL-- 482 (504)
T ss_pred ---------CCC-----------H----HHHHH-----------------------HHH-hhcccCCCCcEEEEeccC--
Confidence 000 1 33444 555 479999999999999998
Q ss_pred CCCCccccccccChHHHHHHHHHH
Q 004568 715 PEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 715 p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
| +|++||++|++|+++|++.
T Consensus 483 p----~t~~gK~~r~~l~~~~~~~ 502 (504)
T PRK07514 483 P----RNTMGKVQKNLLREQYADL 502 (504)
T ss_pred C----CCCCcceeHHHHHHHHHhh
Confidence 8 9999999999999998765
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=572.28 Aligned_cols=499 Identities=24% Similarity=0.344 Sum_probs=406.9
Q ss_pred CHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004568 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (744)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 162 (744)
+++++|++.++++|+++|+.+ +++ ++||+||.+++.++|+.|++.|+++|++|++++
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~ 57 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL 57 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 478999999999999999986 333 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCC
Q 004568 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (744)
Q Consensus 163 ~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (744)
+|++++++++|||+++|++++|+++.++.+++..++++++++++|++......+.......+.+..++.++.......
T Consensus 58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (515)
T TIGR03098 58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE-- 135 (515)
T ss_pred CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence 999999999999999999999999999999999999999999999998777666555555555666666654321110
Q ss_pred ccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEe
Q 004568 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322 (744)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~ 322 (744)
.......|+++...... ........+++++++|||||||.||+|++||+++...+......+ .+..+|++++
T Consensus 136 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~ 207 (515)
T TIGR03098 136 -----GGGESPSWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLA 207 (515)
T ss_pred -----CccccccHHHhhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEE
Confidence 01233456665443221 122334568899999999999999999999999999888887777 8889999999
Q ss_pred cCChHHHHHHHHHHHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 323 YLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 323 ~~Pl~h~~g~~~~~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
.+|++|.+++...+.++..|+++++.+ +..+.+. ++++++|++.++|+++..+.+....
T Consensus 208 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------- 269 (515)
T TIGR03098 208 VLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKA-----------LEKHGITGLAAVPPLWAQLAQLDWP------- 269 (515)
T ss_pred ECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHcCCceEecChHHHHHHHhcccC-------
Confidence 999999999988888899999998843 3444444 9999999999999999887642000
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccC
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG 478 (744)
....+++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 270 -----------------------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG 308 (515)
T TIGR03098 270 -----------------------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYG 308 (515)
T ss_pred -----------------------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeec
Confidence 00124899999999999999999999887 788999999
Q ss_pred hhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCC
Q 004568 479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557 (744)
Q Consensus 479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~ 557 (744)
+||++..+...... ..+.+++|+|+++++++|+| +++.. ++.|+.|||+++|+.++.|||++++.|.+.|..+..
T Consensus 309 ~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 384 (515)
T TIGR03098 309 LTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSE---CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPP 384 (515)
T ss_pred cccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCC---CCCCCceEEEEcCchhhccccCCchhhhhhhhccCC
Confidence 99997655433221 23568999999999999998 55654 567899999999999999999999999887752110
Q ss_pred -------cceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEE
Q 004568 558 -------GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALV 627 (744)
Q Consensus 558 -------g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~v 627 (744)
+.+||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ +.+++++
T Consensus 385 ~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~ 463 (515)
T TIGR03098 385 RPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVV 463 (515)
T ss_pred ccccccccccceeccceEEEcCCceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEE
Confidence 1259999999999999999999999999997 6999999999999999999999999998764 3588888
Q ss_pred EcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEE
Q 004568 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIK 707 (744)
Q Consensus 628 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~ 707 (744)
++..+. ..+ .++|++ +++ ++|+++++|..++
T Consensus 464 ~~~~~~----------~~~---------------~~~l~~-----------------------~l~-~~l~~~~~p~~i~ 494 (515)
T TIGR03098 464 TPPGGE----------ELD---------------RAALLA-----------------------ECR-ARLPNYMVPALIH 494 (515)
T ss_pred EeCCCC----------CCC---------------HHHHHH-----------------------HHH-hhCccccCCCEEE
Confidence 754321 000 134555 555 5899999999999
Q ss_pred EecCCCCCCCCccccccccChHHHHH
Q 004568 708 LMPEPWTPEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 708 ~~~~~~~p~~~~~t~~GKi~R~~l~~ 733 (744)
+++++ | +|.+||++|++|++
T Consensus 495 ~v~~i--P----~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 495 VRQAL--P----RNANGKIDRKALAA 514 (515)
T ss_pred EeccC--C----CCCCCCCcHHHhcc
Confidence 99998 8 99999999999874
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-65 Score=628.00 Aligned_cols=506 Identities=24% Similarity=0.319 Sum_probs=403.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...++.++|+++++++|+++|+++. +++ .+||+||.++++++|+.|++ ++++||+|
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V 668 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV 668 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence 45689999999999999999999742 222 69999999999999999987 58999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhh--ccCCCeeEEEEecCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLKTIKNVIYFENDG 236 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~ii~~~~~~ 236 (744)
+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++++++...+.+.... ...+....++..++..
T Consensus 669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1146)
T PRK08633 669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK 748 (1146)
T ss_pred EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence 99999999999999999999999999999999999999999999999999987766554211 1122233444443211
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCC-----CCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (744)
... .....+.+........ ........++|+++++|||||||.||||++||+++.+.+......+
T Consensus 749 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~ 818 (1146)
T PRK08633 749 AKI----------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF 818 (1146)
T ss_pred ccc----------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc
Confidence 100 0001122211110000 0001345679999999999999999999999999999988888877
Q ss_pred CCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC----CcccccccchhhccCccccceEecceEEeechHHHHHH
Q 004568 312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~----~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l 386 (744)
++.++|++++.+|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|++.++|++++.+
T Consensus 819 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l 886 (1146)
T PRK08633 819 -NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKL-----------VAKHRATILLGTPTFLRLY 886 (1146)
T ss_pred -CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHH
Confidence 8899999999999999999876 56779999998872 23334444 9999999999999999887
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHH
Q 004568 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (744)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 466 (744)
.+... ..+...+++|.+++||+++++++.+.++
T Consensus 887 ~~~~~-----------------------------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~ 919 (1146)
T PRK08633 887 LRNKK-----------------------------------------------LHPLMFASLRLVVAGAEKLKPEVADAFE 919 (1146)
T ss_pred Hhccc-----------------------------------------------cCcccCCCeeeEEEcCCcCCHHHHHHHH
Confidence 65310 0011225899999999999999999999
Q ss_pred hhcCCceecccChhhhcccccccCCCC----------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccc
Q 004568 467 ICMGAPIGQAYGLTETCAGSTFSEWDD----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN 536 (744)
Q Consensus 467 ~~~g~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~ 536 (744)
+.+|+++++.||+||++++++...++. .+.+++|+|+||++++|+|++++.+ +++|+.|||+++|++
T Consensus 920 ~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~Gel~v~g~~ 996 (1146)
T PRK08633 920 EKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEE---LPPGEDGLILIGGPQ 996 (1146)
T ss_pred HHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCcc---CCCCCceEEEEcCCC
Confidence 989999999999999987766543221 2457999999999999999666655 568999999999999
Q ss_pred ccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCc--CcceEEE
Q 004568 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSD--YVDNIMI 614 (744)
Q Consensus 537 v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p--~V~~a~V 614 (744)
++.||+++|+.|++.|.. .+|.|||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+|| .+.+|+|
T Consensus 997 ~~~gY~~~~~~t~~~~~~-~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v 1074 (1146)
T PRK08633 997 VMKGYLGDPEKTAEVIKD-IDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAV 1074 (1146)
T ss_pred ccccccCCccchHHHhhc-CCCCCeEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEE
Confidence 999999999999998852 235589999999999999999999999999997 699999999999999999 4678999
Q ss_pred EecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHH
Q 004568 615 HADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQV 691 (744)
Q Consensus 615 ~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (744)
++.+++. .+++++++.... . +++++ +
T Consensus 1075 ~~~~~~~~g~~~~~~v~~~~~~------------------------~----~~l~~-----------------------~ 1103 (1146)
T PRK08633 1075 TAVPDEKKGEKLVVLHTCGAED------------------------V----EELKR-----------------------A 1103 (1146)
T ss_pred EeccCCCCCcEEEEEEecCccC------------------------H----HHHHH-----------------------H
Confidence 9988763 588888763210 1 23444 4
Q ss_pred HHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 692 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 692 ~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+++.++|+|++|..+++++++ | +|++||++|++|++..++.
T Consensus 1104 ~~~~~l~~~~~P~~i~~~~~i--P----~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1104 IKESGLPNLWKPSRYFKVEAL--P----LLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred HHhcCCCcccCCcEEEEecCc--C----CCCCCCCcHHHHHHHHHHh
Confidence 443689999999999999999 8 9999999999999887654
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=572.54 Aligned_cols=497 Identities=18% Similarity=0.262 Sum_probs=400.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
.+.++.++|+++++ ||++|+++ +++ .+||+||.++++++|+.|.+.|+++|++|+
T Consensus 23 ~~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~ 77 (536)
T PRK10946 23 QDLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTAL 77 (536)
T ss_pred cCccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 34789999999887 99999985 333 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhccCCCeeEEEEecC
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEN 234 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~ 234 (744)
++++|+++++++++||+++|++++++.+..+..++.++++++++++++++.... .....+....+.++.++..+.
T Consensus 78 v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 157 (536)
T PRK10946 78 VQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND 157 (536)
T ss_pred EECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC
Confidence 999999999999999999999888877778888999999999999999986531 122223333455555554332
Q ss_pred CCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC
Q 004568 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (744)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (744)
.. ...+.++...... ........++++++++|||||||.||||++||+++...+......+ ++
T Consensus 158 ~~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~ 220 (536)
T PRK10946 158 DG---------------EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GF 220 (536)
T ss_pred CC---------------CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CC
Confidence 11 1223333332221 1112345678999999999999999999999999999998887777 88
Q ss_pred CCCcEEEecCChHHHHHHHH--HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~--~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
.++|++++.+|++|.+++.. .+.++..|+++++. ++..+.+. ++++++|++.++|.++..+++.
T Consensus 221 ~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~ 289 (536)
T PRK10946 221 TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQA 289 (536)
T ss_pred CCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHH-----------HHHhCCcEEEeChHHHHHHHhh
Confidence 99999999999999988764 46679999999883 33333333 9999999999999999988764
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 469 (744)
...... ....+++|.+++||+++++++.+.+.+.+
T Consensus 290 ~~~~~~---------------------------------------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~ 324 (536)
T PRK10946 290 IAEGGS---------------------------------------------RAQLASLKLLQVGGARLSETLARRIPAEL 324 (536)
T ss_pred hcccCc---------------------------------------------cccccceeEEEECCCCCCHHHHHHHHHhc
Confidence 211000 00114899999999999999999998888
Q ss_pred CCceecccChhhhcccccccCC-CCCCCCccCCCc-CccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcc
Q 004568 470 GAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~ 547 (744)
|+++++.||+||++...+.... .....+++|+|+ |++.++|+| ++++. +++|+.|||+++|+.++.|||++++.
T Consensus 325 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~ 400 (536)
T PRK10946 325 GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNP---LPQGEVGRLMTRGPYTFRGYYKSPQH 400 (536)
T ss_pred CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCC---CCCCCccEEEEecCccchhhcCCccc
Confidence 9999999999997644432221 122357899999 899999998 56654 56899999999999999999999999
Q ss_pred cccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEE
Q 004568 548 TSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCV 624 (744)
Q Consensus 548 t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~ 624 (744)
|.+.|. .+ +||+|||+|++|+||++++.||.+|+||+ +|++|+|.+||++|.+||+|.+++|++.++.. .++
T Consensus 401 t~~~~~--~d--~~~~TGDl~~~d~~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 475 (536)
T PRK10946 401 NASAFD--AN--GFYCSGDLVSIDPDGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSC 475 (536)
T ss_pred chhhcc--cC--CceecCceEEECCCCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEE
Confidence 999986 56 89999999999999999999999999996 69999999999999999999999999988653 588
Q ss_pred EEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcccee
Q 004568 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPA 704 (744)
Q Consensus 625 A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~ 704 (744)
|+|++.+.. + . +++++ ++++..|+.|++|.
T Consensus 476 a~vv~~~~~------------~-----------~----~~l~~-----------------------~~~~~~l~~~~~P~ 505 (536)
T PRK10946 476 AFLVVKEPL------------K-----------A----VQLRR-----------------------FLREQGIAEFKLPD 505 (536)
T ss_pred EEEEeCCCC------------C-----------H----HHHHH-----------------------HHHhCCccccccCc
Confidence 888876421 0 1 34555 66534599999999
Q ss_pred EEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 705 KIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 705 ~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
.+++++++ | +|++||++|++|++++++..
T Consensus 506 ~~~~~~~i--P----~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 506 RVECVDSL--P----LTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred EEEEeccC--C----CCCCCcccHHHHHHHHHhhc
Confidence 99999998 8 99999999999999887654
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=579.56 Aligned_cols=482 Identities=21% Similarity=0.304 Sum_probs=358.7
Q ss_pred HHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 004568 84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163 (744)
Q Consensus 84 l~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 163 (744)
+.+.|+++++++|+++|+++. ++ +.++++||+||.++++++|+.|.++ ++||+|+|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~ 62 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGE 62 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcC
Confidence 889999999999999999853 11 3357899999999999999999988 89999999999
Q ss_pred CcHHHHHHHHHHHhcCcEEEEcCCC--------CCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCC
Q 004568 164 TCVEWFIAFQGCFRQSITVVTIYSS--------LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235 (744)
Q Consensus 164 n~~e~vv~~lA~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 235 (744)
|++++++++|||+++|++++ +++. ...+++.+++++++++++|++......+...... +.+.+
T Consensus 63 ~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~- 133 (525)
T PRK05851 63 PTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD- 133 (525)
T ss_pred CCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc-
Confidence 99999999999999999865 4332 2235666789999999999998765544332111 00000
Q ss_pred CCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCC
Q 004568 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (744)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (744)
+......... .......++|+++|+|||||||.||||++||+++++.+......+ ++.
T Consensus 134 -------------------~~~~~~~~~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~ 191 (525)
T PRK05851 134 -------------------LATAAHTNRS--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLD 191 (525)
T ss_pred -------------------cccccccccc--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCC
Confidence 0000000000 001224678999999999999999999999999999998888777 787
Q ss_pred -CCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 316 -RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 316 -~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
++|++++++|++|++++...+.+++.|+++++.....+... +..++..++++++|++..+|.++..+.+... .
T Consensus 192 ~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~-~- 265 (525)
T PRK05851 192 AATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSAS----PFRWLSWLSDSRATLTAAPNFAYNLIGKYAR-R- 265 (525)
T ss_pred CCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHC----HHHHHHHHHHhCCeEEeCCcHHHHHHHHhhc-c-
Confidence 89999999999999999877888999999988442111100 1112233899999988655554444432100 0
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh---cCC
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---MGA 471 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~---~g~ 471 (744)
......++||.+++||+++++++.+.+.+. +|.
T Consensus 266 --------------------------------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~ 301 (525)
T PRK05851 266 --------------------------------------------VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGF 301 (525)
T ss_pred --------------------------------------------ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCC
Confidence 000112479999999999999998887764 354
Q ss_pred ---ceecccChhhhcccccccCCC---------------CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEc
Q 004568 472 ---PIGQAYGLTETCAGSTFSEWD---------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533 (744)
Q Consensus 472 ---~i~~~YG~TE~~~~~~~~~~~---------------~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~ 533 (744)
.++|.||+||++..++...+. ..+.+++|+|++|++++|+|.+.+.. ++.|+.|||+|+
T Consensus 302 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~GEl~v~ 378 (525)
T PRK05851 302 DAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAG---VAGREIGEIEIR 378 (525)
T ss_pred ChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCcc---CCCCCeEEEEEe
Confidence 499999999998766543221 11346899999999999998433222 568899999999
Q ss_pred cccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEE
Q 004568 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613 (744)
Q Consensus 534 g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~ 613 (744)
|++++.|||++++.+ .+ |||+|||+|+++ +|+|+|+||.||+||+ +|+||+|.|||++|.+||+|.+|+
T Consensus 379 g~~~~~GY~~~~~~~-------~~--~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~ 447 (525)
T PRK05851 379 GASMMSGYLGQAPID-------PD--DWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGA 447 (525)
T ss_pred cCchhhccccCCccC-------CC--CceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccce
Confidence 999999999998642 34 899999999996 8999999999999998 699999999999999999999999
Q ss_pred EEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHH
Q 004568 614 IHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQ 690 (744)
Q Consensus 614 V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (744)
|++.+++. .+.++|+..... . + .+.+.+.+++
T Consensus 448 vv~~~~~~~~~~~~~~v~~~~~~---------~----------~---~~~~~~~~~~----------------------- 482 (525)
T PRK05851 448 VVAVGTGEGSARPGLVIAAEFRG---------P----------D---EAGARSEVVQ----------------------- 482 (525)
T ss_pred EEEEEecCCCCceeEEEEEEecC---------c----------c---hHHHHHHHHH-----------------------
Confidence 99876543 355655543110 0 0 0122233333
Q ss_pred HHHhcCCCCc--cceeEEEEec--CCCCCCCCccccccccChHHHHHHHHH
Q 004568 691 VAKAAKLDKF--EIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 691 ~~~~~~L~~~--~~P~~i~~~~--~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|+.| ++|+.+++++ ++ | +|++|||+|++|++.+++
T Consensus 483 -----~l~~~l~~~P~~~~~v~~~~l--P----~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 483 -----RVASECGVVPSDVVFVAPGSL--P----RTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred -----HHHHHhCCCccEEEEECCCCc--C----cCcchHHHHHHHHHHHHh
Confidence 23333 8999999998 67 8 999999999999988764
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-64 Score=574.58 Aligned_cols=511 Identities=23% Similarity=0.354 Sum_probs=394.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA 158 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~gd~V 158 (744)
...++.++|.++++++|+++|++. +++ .+||+||.++++++|+.|.+. |+++||+|
T Consensus 22 ~~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V 78 (562)
T PRK12492 22 AYKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDRI 78 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 346899999999999999999975 333 699999999999999999985 99999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
+++++|+++|++++|||+++|++++|+++.++.+++.+++++++++++++++...+.+..+.... ....++........
T Consensus 79 ~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 157 (562)
T PRK12492 79 AVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLL 157 (562)
T ss_pred EEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhcc
Confidence 99999999999999999999999999999999999999999999999999876655444332221 11222111100000
Q ss_pred c----------CCCccCC-C--CCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHH
Q 004568 239 K----------DSGVSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305 (744)
Q Consensus 239 ~----------~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~ 305 (744)
. ....... + ......+|+++..........+.....+++++|+|||||||.||||+++|+++...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~ 237 (562)
T PRK12492 158 PAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML 237 (562)
T ss_pred ccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH
Confidence 0 0000000 0 0012245666554433222223345678999999999999999999999999988776
Q ss_pred HHHhhCCC--------CCC-CcEEEecCChHHHHHHHHH-HHHHHhcceEEeC-CcccccccchhhccCccccceEecce
Q 004568 306 AIKTLIPN--------PGR-SDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPT 374 (744)
Q Consensus 306 ~~~~~~~~--------~~~-~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~T 374 (744)
.....+.. +.. ++++++.+|++|.+++... +..+..|+++++. ++... ..++..++++++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t 309 (562)
T PRK12492 238 QVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDI--------PGFIKELGKWRFS 309 (562)
T ss_pred HHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCH--------HHHHHHHHHhCCc
Confidence 65544311 222 3578999999999998654 4457778876652 22211 1122339999999
Q ss_pred EEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEec
Q 004568 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454 (744)
Q Consensus 375 ~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG 454 (744)
++.++|+++..+.+... ......+++|.+++||
T Consensus 310 ~~~~~p~~~~~l~~~~~-----------------------------------------------~~~~~~~~lr~~~~gG 342 (562)
T PRK12492 310 ALLGLNTLFVALMDHPG-----------------------------------------------FKDLDFSALKLTNSGG 342 (562)
T ss_pred eeeCcHHHHHHHHhCcC-----------------------------------------------cccccccceeEEEecc
Confidence 99999999988765210 0011125899999999
Q ss_pred CCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEc
Q 004568 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG 533 (744)
Q Consensus 455 ~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~ 533 (744)
+++++++.+.+.+.+|+++++.||+||++.+++...... ...+++|+|+++++++|+| +++.. +++|+.|||+|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~---~~~g~~Gel~v~ 418 (562)
T PRK12492 343 TALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE---LPLGERGELCIK 418 (562)
T ss_pred ccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC---CCCCCceEEEEe
Confidence 999999999999888999999999999988776554332 2457899999999999999 56654 568899999999
Q ss_pred cccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEE
Q 004568 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613 (744)
Q Consensus 534 g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~ 613 (744)
|+.++.|||++++.|.+.|. .+ |||+|||+|++|++|+++|.||.||+||+ +|++|+|.+||++|.+||.|.+++
T Consensus 419 g~~~~~gY~~~~~~t~~~~~--~~--g~~~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~ 493 (562)
T PRK12492 419 GPQVMKGYWQQPEATAEALD--AE--GWFKTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCA 493 (562)
T ss_pred CCccccccccCchhhhhccc--CC--CceecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEE
Confidence 99999999999999999885 45 89999999999999999999999999997 599999999999999999999999
Q ss_pred EEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHH
Q 004568 614 IHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQ 690 (744)
Q Consensus 614 V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (744)
|++.++. ..+++++++.+.. .+ .+++++
T Consensus 494 v~~~~~~~~~~~~~~~v~~~~~~-----------~~---------------~~~i~~----------------------- 524 (562)
T PRK12492 494 AIGVPDERSGEAVKLFVVARDPG-----------LS---------------VEELKA----------------------- 524 (562)
T ss_pred EEeccCCCCCceEEEEEEeCCCC-----------CC---------------HHHHHH-----------------------
Confidence 9998765 3588888765421 00 134555
Q ss_pred HHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 691 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 691 ~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
+++ .+|+.|++|.++++++++ | +|++||++|++|++.
T Consensus 525 ~~~-~~l~~~~~P~~i~~~~~~--P----~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 525 YCK-ENFTGYKVPKHIVLRDSL--P----MTPVGKILRRELRDI 561 (562)
T ss_pred HHH-HhcccccCCcEEEEeccC--C----CCCCCceeHHHHHhh
Confidence 666 589999999999999999 8 999999999999864
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=575.94 Aligned_cols=503 Identities=24% Similarity=0.343 Sum_probs=403.0
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|.+.++++|+++|+++.+ ++ +.+||+||.++++++|+.|.+.|+++||+|+++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~ 76 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW 76 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 589999999999999999998741 22 379999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhc-------------cC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-------------SL 223 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-------------~~ 223 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+..... ..
T Consensus 77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (558)
T PRK12583 77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL 156 (558)
T ss_pred CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence 9999999999999999999999999999999999999999999999976432 12222111 12
Q ss_pred CCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCC-----CCCCCCCCCCCeEEEEecCCCCCcchhhhhchH
Q 004568 224 KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298 (744)
Q Consensus 224 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~ 298 (744)
+.+..++.++.... .....|+++....... ........++++++++|||||||.||+|.+||+
T Consensus 157 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~ 224 (558)
T PRK12583 157 PELRGVVSLAPAPP------------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHH 224 (558)
T ss_pred CcceEEEEecCCCC------------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHH
Confidence 23334443332211 1123344443322111 001123457889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeC----CcccccccchhhccCccccceEecc
Q 004568 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKP 373 (744)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~----~~~~~~~~~~~~~~~~~~~i~~~~~ 373 (744)
++.+.+......+ ++.++|++++.+|++|.+|.... +.++..|+++++. ++..++.. ++++++
T Consensus 225 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~-----------i~~~~~ 292 (558)
T PRK12583 225 NILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA-----------VEEERC 292 (558)
T ss_pred HHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH-----------HHHcCC
Confidence 9999888887777 88999999999999999998664 5668889998862 33333333 999999
Q ss_pred eEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEe
Q 004568 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICG 453 (744)
Q Consensus 374 T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~g 453 (744)
|+++++|+++..+...... .....+++|.+++|
T Consensus 293 t~l~~~P~~~~~l~~~~~~-----------------------------------------------~~~~~~~lr~i~~~ 325 (558)
T PRK12583 293 TALYGVPTMFIAELDHPQR-----------------------------------------------GNFDLSSLRTGIMA 325 (558)
T ss_pred eEEeccHHHHHHHHccccc-----------------------------------------------cCCCchhheEEEec
Confidence 9999999998776542100 00112489999999
Q ss_pred cCCCCHHHHHHHHhhcC-CceecccChhhhcccccccCCC---CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcE
Q 004568 454 GAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE 529 (744)
Q Consensus 454 G~~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GE 529 (744)
|+++++++.+.+.+.++ ..+++.||+||++.+++..... ..+..++|+|++++.++|+|++ +.. ++.|+.||
T Consensus 326 G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~---~~~g~~Ge 401 (558)
T PRK12583 326 GAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GAT---VPRGEIGE 401 (558)
T ss_pred CCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCC---CCCCCeeE
Confidence 99999999998888775 5799999999999877655332 2245799999999999999944 544 56889999
Q ss_pred EEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCc
Q 004568 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609 (744)
Q Consensus 530 l~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V 609 (744)
|+|+|+.++.||+++++.+.+.|. .+ +||+|||+|++++||++++.||.||+||+ +|++|+|.+||++|.+||+|
T Consensus 402 l~v~g~~~~~gy~~~~~~~~~~~~--~~--~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v 476 (558)
T PRK12583 402 LCTRGYSVMKGYWNNPEATAESID--ED--GWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAV 476 (558)
T ss_pred EEEEeCccchhhcCChHHHHhhcC--CC--CCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCe
Confidence 999999999999999999988875 45 89999999999999999999999999996 69999999999999999999
Q ss_pred ceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhh
Q 004568 610 DNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTT 686 (744)
Q Consensus 610 ~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 686 (744)
.+++|++.++. ..++++|++.++. ..+ .++|++
T Consensus 477 ~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~---------------~~~i~~------------------- 512 (558)
T PRK12583 477 ADVQVFGVPDEKYGEEIVAWVRLHPGH----------AAS---------------EEELRE------------------- 512 (558)
T ss_pred eEEEEEeeecCCCCcEEEEEEEECCCC----------CCC---------------HHHHHH-------------------
Confidence 99999998765 3588888876531 000 135555
Q ss_pred hhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 687 LCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 687 ~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+++ .+|+.|++|..+++++++ | +|++||++|++|++++.++++
T Consensus 513 ----~~~-~~L~~~~~P~~i~~v~~l--P----~t~sGK~~r~~L~~~~~~~~~ 555 (558)
T PRK12583 513 ----FCK-ARIAHFKVPRYFRFVDEF--P----MTVTGKVQKFRMREISIEELA 555 (558)
T ss_pred ----HHH-hhcccCcCCcEEEEeccC--C----CCCCCCccHHHHHHHHHhhcC
Confidence 666 689999999999999998 8 999999999999999887654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=570.47 Aligned_cols=507 Identities=21% Similarity=0.295 Sum_probs=400.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 79 ~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
+...++.++|.++++++|+++|++. +++ .+||+||.++++++|+.|.+.|+++||+|
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V 63 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGDRV 63 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 4557999999999999999999974 332 69999999999999999999999999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhh-----hHHHHhhc-cCCCeeEEEEe
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-SLKTIKNVIYF 232 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~~~~ii~~ 232 (744)
+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++++.. +.+..... ..+.++.++.+
T Consensus 64 ~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (540)
T PRK06164 64 AVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVV 143 (540)
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEe
Confidence 9999999999999999999999999999999999999999999999999987642 22222211 12344555555
Q ss_pred cCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCC---CCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHh
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (744)
+........ .....+.++........ .......++++++++|||||||.||+|++||+++...+.....
T Consensus 144 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~ 215 (540)
T PRK06164 144 DDAADATPA--------PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR 215 (540)
T ss_pred ccCcccCCC--------CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH
Confidence 421110000 00000111111000000 0012335689999999999999999999999999999988888
Q ss_pred hCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHH
Q 004568 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (744)
Q Consensus 310 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l 386 (744)
.+ ++..+|++++++|++|.+|+...+.++..|+++++. ++..+++. ++++++|+++++|+++..+
T Consensus 216 ~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~l~~l 283 (540)
T PRK06164 216 AY-GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARA-----------LRRHRVTHTFGNDEMLRRI 283 (540)
T ss_pred hc-CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeeecCCHHHHHHH
Confidence 88 889999999999999999998878889999999884 33333333 9999999999999999998
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEec-CCCCHHHHHHH
Q 004568 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG-APLSADSQRFI 465 (744)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG-~~l~~~~~~~~ 465 (744)
.+... . ....++++.+..+| .+.+.++.+++
T Consensus 284 ~~~~~----~--------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~ 315 (540)
T PRK06164 284 LDTAG----E--------------------------------------------RADFPSARLFGFASFAPALGELAALA 315 (540)
T ss_pred HHhhc----c--------------------------------------------cCCCcceeeeeeccCCcchHHHHHHH
Confidence 76410 0 01124788776665 56666777777
Q ss_pred HhhcCCceecccChhhhcccccccCCCCC---CCCccCCCc-CccEEEEEecCCCCccCCCCCCCCcEEEEccccccccc
Q 004568 466 NICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541 (744)
Q Consensus 466 ~~~~g~~i~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~-~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY 541 (744)
... |+++++.||+||++++++....... ...+.|.|+ ++++++|+|++++.. +++|+.|||+|+|++++.||
T Consensus 316 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY 391 (540)
T PRK06164 316 RAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL---LPDGESGEIEIRAPSLMRGY 391 (540)
T ss_pred hhc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC---CCCCCeeEEEEecccccccc
Confidence 665 8999999999999887765543322 235678886 899999999666654 56899999999999999999
Q ss_pred cCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC-
Q 004568 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (744)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~- 620 (744)
|++++.|.+.|. .+ |||+|||+|++|++|++++.||.||+||+ +|++|+|.|||++|.+||+|.+++|++.+..
T Consensus 392 ~~~~~~t~~~~~--~~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~ 466 (540)
T PRK06164 392 LDNPDATARALT--DD--GYFRTGDLGYTRGDGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDG 466 (540)
T ss_pred cCCchhhhhccc--CC--CceecCCeEEEcCCceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCC
Confidence 999999999986 56 89999999999999999999999999998 6999999999999999999999999997633
Q ss_pred -CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCC
Q 004568 621 -NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDK 699 (744)
Q Consensus 621 -~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 699 (744)
..++++|++.++. ..+ .++|.+ +++ .+|++
T Consensus 467 ~~~~~~~vv~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~ 497 (540)
T PRK06164 467 KTVPVAFVIPTDGA----------SPD---------------EAGLMA-----------------------ACR-EALAG 497 (540)
T ss_pred ceeEEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHH-hhccc
Confidence 3589999886532 000 134555 666 58999
Q ss_pred ccceeEEEEecCCCCCCCCcccccc---ccChHHHHHHHHHHHH
Q 004568 700 FEIPAKIKLMPEPWTPEAGLVTAAL---KIKREQLKAKFKDDLQ 740 (744)
Q Consensus 700 ~~~P~~i~~~~~~~~p~~~~~t~~G---Ki~R~~l~~~~~~~i~ 740 (744)
|++|+.|++++++ | +|++| |++|+.|++++++.+.
T Consensus 498 ~~~P~~i~~~~~~--P----~t~~g~~~Ki~r~~L~~~~~~~~~ 535 (540)
T PRK06164 498 FKVPARVQVVEAF--P----VTESANGAKIQKHRLREMAQARLA 535 (540)
T ss_pred CcCCcEEEEecCC--C----CCCCCccccccHHHHHHHHHHhhh
Confidence 9999999999998 8 89999 9999999999887654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=569.18 Aligned_cols=505 Identities=27% Similarity=0.385 Sum_probs=422.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|+.++|.++++.+|+++|+.+ .++ .+||+||.++++++|+.|.+.|+++|++|+
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~ 60 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVA 60 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 347999999999999999999986 332 599999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++.+..+.+..+....+.++.++..++....
T Consensus 61 l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 139 (521)
T PRK06187 61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA- 139 (521)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-
Confidence 9999999999999999999999999999999999999999999999999999888888877777777777776654321
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
........+.++........ ......++++++++|||||||.||+|.+||+++.+........+ ++.++|+
T Consensus 140 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~ 210 (521)
T PRK06187 140 -------PLAPEVGEYEELLAAASDTF-DFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDV 210 (521)
T ss_pred -------ccccccccHHHHhhcCCccC-CCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCE
Confidence 01123455666654332221 23345678999999999999999999999999999888887777 8999999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
+++.+|++|.+++...+.++..|+++++.+.. + ...++..++++++|+++++|++++.+.+.....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~---~-----~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------ 276 (521)
T PRK06187 211 YLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF---D-----PENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------ 276 (521)
T ss_pred EEEeCCchHHhhHHHHHHHHHhCCEEEecCCC---C-----HHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC------
Confidence 99999999999988877799999999885432 1 122334499999999999999999887642110
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccCh
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~ 479 (744)
....+++|.+++||+++++++.+.+.+.+++++++.||+
T Consensus 277 -----------------------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~ 315 (521)
T PRK06187 277 -----------------------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGM 315 (521)
T ss_pred -----------------------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeecc
Confidence 011248999999999999999999999889999999999
Q ss_pred hhhcccccccCCCCC------CCCccCCCcCccEEEEEecCCCCccCCCCC--CCCcEEEEccccccccccCCCcccccc
Q 004568 480 TETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEV 551 (744)
Q Consensus 480 TE~~~~~~~~~~~~~------~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~--g~~GEl~v~g~~v~~gY~~~~~~t~~~ 551 (744)
||+++++........ ..+++|+|+++++++|+| +++.. ++. |+.|||+++|++++.||+++++.+.+.
T Consensus 316 tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~ 391 (521)
T PRK06187 316 TETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDE---LPPDGGEVGEIIVRGPWLMQGYWNRPEATAET 391 (521)
T ss_pred CccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCC---CCCCCCCeeEEEEECcchhhhhcCCHHHHHHH
Confidence 999887766544333 557999999999999999 55554 345 899999999999999999999999998
Q ss_pred cccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 004568 552 YKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVV 628 (744)
Q Consensus 552 f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv 628 (744)
| .+ +||+|||+++++++|++++.||.+|+||+ +|++|+|.+||++|.++|+|.+++|++.+++ ..++++++
T Consensus 392 ~---~~--~~~~tGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 465 (521)
T PRK06187 392 I---DG--GWLHTGDVGYIDEDGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVV 465 (521)
T ss_pred h---hC--CceeccceEEEcCCCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEE
Confidence 8 56 79999999999999999999999999997 6999999999999999999999999998754 36888888
Q ss_pred cCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEE
Q 004568 629 PSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKL 708 (744)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~ 708 (744)
+.++. ..+ . +++++ +++ ..|+.|++|..+++
T Consensus 466 ~~~~~----------~~~-----------~----~~l~~-----------------------~l~-~~l~~~~~p~~i~~ 496 (521)
T PRK06187 466 LKPGA----------TLD-----------A----KELRA-----------------------FLR-GRLAKFKLPKRIAF 496 (521)
T ss_pred ECCCC----------CCC-----------H----HHHHH-----------------------HHH-HhccCCCCceEEEE
Confidence 76532 000 1 33444 554 48999999999999
Q ss_pred ecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 709 MPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 709 ~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
++++ | +|++||++|+.|+++|++
T Consensus 497 v~~~--P----~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 497 VDEL--P----RTSVGKILKRVLREQYAE 519 (521)
T ss_pred ccCC--C----CCCCCCeeHHHHHHHHhc
Confidence 9998 8 999999999999999975
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=581.40 Aligned_cols=503 Identities=22% Similarity=0.272 Sum_probs=388.5
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|+.++|.++++++|+++|+++ +++ .+||+||.++++++|+.|.+.|+++||+|+
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~ 91 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLF------------EDQ-----------SISYAELNARANRYAHWAAARGVGKGDVVA 91 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 347899999999999999999986 333 699999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+............++..+.....
T Consensus 92 i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (600)
T PRK08279 92 LLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD- 170 (600)
T ss_pred EECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc-
Confidence 9999999999999999999999999999999999999999999999999998877776655444433333333221100
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCC----CCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCC
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRS----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (744)
....+.++....... +.......++++++|+|||||||.||||++||+++++.+......+ ++.
T Consensus 171 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~ 238 (600)
T PRK08279 171 -----------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLT 238 (600)
T ss_pred -----------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCC
Confidence 012233333221111 1112344678999999999999999999999999999999888887 899
Q ss_pred CCcEEEecCChHHHHHHHHHH-HHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 316 RSDVYLAYLPLAHVLELAAES-IMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 316 ~~d~~l~~~Pl~h~~g~~~~~-~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
++|++++++|++|.+++...+ .++..|+++++. ++..+++. ++++++|++.++|++++.+.+...
T Consensus 239 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~l~~~l~~~~~ 307 (600)
T PRK08279 239 PDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDD-----------VRRYRATAFQYIGELCRYLLNQPP 307 (600)
T ss_pred CCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHH-----------HHHhcceEEeehHHHHHHHHhCCC
Confidence 999999999999999987765 457788888883 33344444 999999999999999988764210
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
... ....++|.+ +|+.+++++.+.+.+.++.
T Consensus 308 ~~~-----------------------------------------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~ 338 (600)
T PRK08279 308 KPT-----------------------------------------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGI 338 (600)
T ss_pred Ccc-----------------------------------------------ccCcceeEE--ecCCCCHHHHHHHHHHhCc
Confidence 000 001367754 4778999999999988876
Q ss_pred -ceecccChhhhcccccccCCCCCCCCccCCCcC----ccEEEEEecCCCC-------ccCCCCCCCCcEEE--Eccccc
Q 004568 472 -PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP----CCYIKLVSWDEGG-------YKTSDKPMPRGEIV--VGGFNV 537 (744)
Q Consensus 472 -~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~----~~~v~i~d~~~~~-------~~~~~~~g~~GEl~--v~g~~v 537 (744)
.+++.||+||++..++.. ....+++|.+.+ +..+...+.+.+. ....+++|+.|||+ ++|+++
T Consensus 339 ~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~ 415 (600)
T PRK08279 339 PRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGP 415 (600)
T ss_pred ceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccc
Confidence 599999999988644321 234467887666 3333322212111 11236788999998 789999
Q ss_pred cccccCCCcccccccccC--CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEE
Q 004568 538 TAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIH 615 (744)
Q Consensus 538 ~~gY~~~~~~t~~~f~~~--~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~ 615 (744)
+.|| ++++.|.+.|..+ .++.+||+|||+|++|+||++++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|+
T Consensus 416 ~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~ 493 (600)
T PRK08279 416 FDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVY 493 (600)
T ss_pred cccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEE
Confidence 9999 8999998887532 234489999999999999999999999999997 69999999999999999999999999
Q ss_pred ecCCC----CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHH
Q 004568 616 ADPFH----NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQV 691 (744)
Q Consensus 616 g~~~~----~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (744)
+.+++ ...+++|+..++. +.+ .+++++ +
T Consensus 494 gv~~~~~~~~~~~~~vv~~~~~----------~~~---------------~~~l~~-----------------------~ 525 (600)
T PRK08279 494 GVEVPGTDGRAGMAAIVLADGA----------EFD---------------LAALAA-----------------------H 525 (600)
T ss_pred EeecCCCCCccceeEEEecCCc----------cCC---------------HHHHHH-----------------------H
Confidence 87643 2345555544321 000 145666 6
Q ss_pred HHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 692 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 692 ~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
++ .+|+.|++|..|++++++ | +|.+||++|++|++.+.+.
T Consensus 526 l~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 526 LY-ERLPAYAVPLFVRLVPEL--E----TTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred HH-hhCccccCCeEEEeecCC--C----CCcchhhhHHHHhhcCCCc
Confidence 66 589999999999999998 8 9999999999999877543
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=565.78 Aligned_cols=486 Identities=22% Similarity=0.289 Sum_probs=394.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+.++.++|+++++++|+++|+++ +++ .+||.||.++++++|.+|.+.|+++|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i 57 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVAL 57 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46889999999999999999986 444 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++.+....... ....+.++....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~--- 127 (497)
T PRK06145 58 LMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQ--- 127 (497)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCccc---
Confidence 9999999999999999999999999999999999999999999999998765433210 011222221100
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
..+..+.. ............++++++++|||||||.||+|++||+++...+......+ ++..+|++
T Consensus 128 ------------~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~ 193 (497)
T PRK06145 128 ------------ADSRRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERL 193 (497)
T ss_pred ------------chhHHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEE
Confidence 00111111 11111112345678999999999999999999999999987766666666 88999999
Q ss_pred EecCChHHHHHHHHH-HHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 321 LAYLPLAHVLELAAE-SIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 321 l~~~Pl~h~~g~~~~-~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
+..+|++|.+++... +.++..|+++++ +++..+++. ++++++|++.++|+++..++.....
T Consensus 194 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ll~~~~~---- 258 (497)
T PRK06145 194 LVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAA-----------IERHRLTCAWMAPVMLSRVLTVPDR---- 258 (497)
T ss_pred EEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHcCCCc----
Confidence 999999999988654 567889999887 344444444 9999999999999999888652100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceec
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ 475 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~ 475 (744)
.....+++|.+++||+++++++.+.+.+.+ ++++++
T Consensus 259 -------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~ 295 (497)
T PRK06145 259 -------------------------------------------DRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYID 295 (497)
T ss_pred -------------------------------------------cccccccceEEEecCCCCCHHHHHHHHHHcCCCceEE
Confidence 000114799999999999999999888877 688999
Q ss_pred ccChhhhcccccccCCC--CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccc
Q 004568 476 AYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (744)
.||+||++..++..... ....+++|+|+++++++++| +++.. +++|+.|||+++|++++.||+++++.+++.|
T Consensus 296 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~- 370 (497)
T PRK06145 296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRW---LPPNMKGEICMRGPKVTKGYWKDPEKTAEAF- 370 (497)
T ss_pred eecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCC---CCCCCceEEEEECcchhhhhcCChHHHHHHH-
Confidence 99999999866544322 22457899999999999998 55544 5688999999999999999999999999998
Q ss_pred cCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 004568 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (744)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~ 630 (744)
.+ +||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+++|++.++. +.++|++++.
T Consensus 371 --~~--~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 445 (497)
T PRK06145 371 --YG--DWFRSGDVGYLDEEGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLN 445 (497)
T ss_pred --hC--CCeeccceEEEcCCCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEEC
Confidence 56 89999999999999999999999999997 6999999999999999999999999998765 3588999886
Q ss_pred HHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec
Q 004568 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710 (744)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~ 710 (744)
+.. ..+ .++|.+ +++ .+|++|++|..+++++
T Consensus 446 ~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~v~ 476 (497)
T PRK06145 446 PGA----------TLT---------------LEALDR-----------------------HCR-QRLASFKVPRQLKVRD 476 (497)
T ss_pred CCC----------CCC---------------HHHHHH-----------------------HHH-HhhhcCCCCCEEEEec
Confidence 431 000 134555 666 5899999999999999
Q ss_pred CCCCCCCCccccccccChHHHHHHHH
Q 004568 711 EPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 711 ~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
++ | +|++||++|++|++++.
T Consensus 477 ~i--P----~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 477 EL--P----RNPSGKVLKRVLRDELN 496 (497)
T ss_pred cC--C----CCCcccccHHHHHHHhc
Confidence 99 8 99999999999998754
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=688.85 Aligned_cols=530 Identities=21% Similarity=0.269 Sum_probs=419.6
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|..+ +..++++...+++.+...++ ....+.+...+++++|+++++++||++|+++ ++.
T Consensus 2155 ~~~~---~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~------------~~~---- 2212 (4334)
T PRK05691 2155 PQQR---LAELPLLAAAEQQQLLDSLA---GEAGEARLDQTLHGLFAAQAARTPQAPALTF------------AGQ---- 2212 (4334)
T ss_pred hcCC---hhhccCCcHHHHHHHHHHhC---CCCcCCCcccchHHHHHHHHHHCCCCeEEEe------------CCe----
Confidence 5555 77888888877777665544 2222334457899999999999999999986 333
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++||++|.++.+++.+++++++
T Consensus 2213 -------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~ 2285 (4334)
T PRK05691 2213 -------TLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSG 2285 (4334)
T ss_pred -------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEe
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~ 282 (744)
+++++++....+.+..... ....+ ...... ..+.. ...........++++++|+|
T Consensus 2286 ~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~-------------------~~~~~--~~~~~~~~~~~~~~~a~ii~ 2340 (4334)
T PRK05691 2286 IGLLLSDRALFEALGELPA---GVARW-CLEDDA-------------------AALAA--YSDAPLPFLSLPQHQAYLIY 2340 (4334)
T ss_pred CCEEEeChhhhhhhccccc---cceeE-Eeccch-------------------hhhhc--CCCCCCCCCCCCCCcEEEEe
Confidence 9999999876554432111 11111 111000 00000 00111112345789999999
Q ss_pred cCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhcc
Q 004568 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362 (744)
Q Consensus 283 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 362 (744)
||||||.||||+++|+++.+.+.+....+ ++.++|+++.+.|++|+.++...+.+|..|+++++.+...+ + ..
T Consensus 2341 TSGSTG~PKGV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~-~-----~~ 2413 (4334)
T PRK05691 2341 TSGSTGKPKGVVVSHGEIAMHCQAVIERF-GMRADDCELHFYSINFDAASERLLVPLLCGARVVLRAQGQW-G-----AE 2413 (4334)
T ss_pred CCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccC-C-----HH
Confidence 99999999999999999999999888888 99999999999999999999999999999999998432211 1 12
Q ss_pred CccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHH
Q 004568 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442 (744)
Q Consensus 363 ~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (744)
.+...++++++|++.++|+++..|.+......
T Consensus 2414 ~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~~------------------------------------------------ 2445 (4334)
T PRK05691 2414 EICQLIREQQVSILGFTPSYGSQLAQWLAGQG------------------------------------------------ 2445 (4334)
T ss_pred HHHHHHHHcCCeEEEcCHHHHHHHHHhhhccc------------------------------------------------
Confidence 23334999999999999999998876421100
Q ss_pred hcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhhhcccccccCC-C----CCCCCccCCCcCccEEEEEecCCC
Q 004568 443 LGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEW-D----DPSVGRVGPPVPCCYIKLVSWDEG 516 (744)
Q Consensus 443 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~----~~~~~~vG~p~~~~~v~i~d~~~~ 516 (744)
...++|.+++||+++++++.+.+.+.+ +..++|.||+||++...+.... . .....++|+|++++.++|+| +++
T Consensus 2446 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d-~~~ 2524 (4334)
T PRK05691 2446 EQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILD-ADL 2524 (4334)
T ss_pred cCCCceEEEEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEEC-CCC
Confidence 013699999999999999999998876 4679999999999865443321 1 11234699999999999998 556
Q ss_pred CccCCCCCCCCcEEEEccccccccccCCCcccccccccCC---CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeee
Q 004568 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE---RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEY 593 (744)
Q Consensus 517 ~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~---~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~ 593 (744)
.. ++.|..|||+|+|++++.||+++|+.|+++|..++ ++.+||+|||+|++++||+++|+||+||+||+ +|++
T Consensus 2525 ~~---vp~G~~GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki-~G~r 2600 (4334)
T PRK05691 2525 AL---VPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKI-RGFR 2600 (4334)
T ss_pred CC---CCCCCceEEEecccccCccccCChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEe-eeEE
Confidence 54 67999999999999999999999999999997432 24579999999999999999999999999998 5999
Q ss_pred eccHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhcccc
Q 004568 594 ISLGKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTL 671 (744)
Q Consensus 594 V~p~eIE~~l~~~p~V~~a~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 671 (744)
|+|.|||++|.+||+|.+|+|++.++. ..++|+|++..... +.+......++|++
T Consensus 2601 Ie~~EIE~~l~~~p~V~~a~V~~~~~~~~~~lva~vv~~~~~~-------------------~~~~~~~~~~~l~~---- 2657 (4334)
T PRK05691 2601 IELGEIESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQ-------------------DDEAQAALREALKA---- 2657 (4334)
T ss_pred echHHHHHHHHhCCCcceEEEEEeeCCCCcEEEEEEEeccccc-------------------ccccccccHHHHHH----
Confidence 999999999999999999999987532 46999998753210 00001122345666
Q ss_pred ccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHH
Q 004568 672 VSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 735 (744)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~ 735 (744)
+++ .+||.||+|+.+++++++ | +|++||++|++|.+..
T Consensus 2658 -------------------~l~-~~Lp~ymvP~~~~~v~~l--P----~t~~GKidr~~L~~~~ 2695 (4334)
T PRK05691 2658 -------------------HLK-QQLPDYMVPAHLILLDSL--P----LTANGKLDRRALPAPD 2695 (4334)
T ss_pred -------------------HHH-hhCccccCChhheeeccc--C----CCCCCcccHHhhcCcc
Confidence 666 699999999999999999 8 9999999999997643
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=566.53 Aligned_cols=495 Identities=22% Similarity=0.257 Sum_probs=402.4
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|.++++++|+++|+++ ++. .+||+||.++++++|..|.+.|+++|++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i 67 (524)
T PRK06188 11 GATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVAL 67 (524)
T ss_pred CccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECch-hhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
+++|+++++++++||+++|++++|+++..+.+++.++++.++++.+++++. ....+.......+.+.+++.++.....
T Consensus 68 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 146 (524)
T PRK06188 68 LSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDG- 146 (524)
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccch-
Confidence 999999999999999999999999999999999999999999999999876 344444434444445555544332100
Q ss_pred CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
....+......... ......++++++++|||||||.||+|+++|.++...+......+ .+..+|+
T Consensus 147 -------------~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 211 (524)
T PRK06188 147 -------------VDLLAAAAKFGPAP-LVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPR 211 (524)
T ss_pred -------------hhHHHhhhccCccc-ccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcE
Confidence 00011111000111 11223456799999999999999999999999999988888887 8899999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCC---cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
+++.+|++|..++. .+.+++.|+++++.+ +..+.+. ++++++|++.++|+++..+++....
T Consensus 212 ~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~---- 275 (524)
T PRK06188 212 FLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRA-----------IEEQRITATFLVPTMIYALLDHPDL---- 275 (524)
T ss_pred EEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHhCcCc----
Confidence 99999999998875 456788999999843 3444444 9999999999999999988753110
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecc
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~ 476 (744)
.....+++|.+++||++++++..+.+.+.++..+++.
T Consensus 276 -------------------------------------------~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~ 312 (524)
T PRK06188 276 -------------------------------------------RTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQY 312 (524)
T ss_pred -------------------------------------------cCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhhe
Confidence 0011258999999999999998887777789999999
Q ss_pred cChhhhcccccccCCCC------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccccc
Q 004568 477 YGLTETCAGSTFSEWDD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (744)
Q Consensus 477 YG~TE~~~~~~~~~~~~------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~ 550 (744)
||+||++..++...... ...+++|+|+++++++|+| +++.. +++|+.|||+++|+.++.||+++++.+..
T Consensus 313 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~ 388 (524)
T PRK06188 313 YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGRE---VAQGEVGEICVRGPLVMDGYWNRPEETAE 388 (524)
T ss_pred eCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCC---CCCCCeeEEEEECcchhhhhcCChHHhhh
Confidence 99999976665543322 2457899999999999998 55554 56899999999999999999999999998
Q ss_pred ccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEE
Q 004568 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALV 627 (744)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~v 627 (744)
.| .+ |||+|||+|++++||+++|.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++ ..++++|
T Consensus 389 ~~---~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v 462 (524)
T PRK06188 389 AF---RD--GWLHTGDVAREDEDGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVV 462 (524)
T ss_pred hh---cC--CceeecceEEEcCCccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEE
Confidence 88 66 89999999999999999999999999997 7999999999999999999999999998765 3588888
Q ss_pred EcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEE
Q 004568 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIK 707 (744)
Q Consensus 628 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~ 707 (744)
++.++. ... .++|++ +++ ..++.|++|..|+
T Consensus 463 ~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~ 493 (524)
T PRK06188 463 VLRPGA----------AVD---------------AAELQA-----------------------HVK-ERKGSVHAPKQVD 493 (524)
T ss_pred EECCCC----------CCC---------------HHHHHH-----------------------HHH-HhcccCCCCcEEE
Confidence 876532 000 134555 555 5899999999999
Q ss_pred EecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 708 LMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 708 ~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+++++ | +|++||++|++|++.|.+-
T Consensus 494 ~v~~~--P----~t~~gKi~r~~L~~~~~~~ 518 (524)
T PRK06188 494 FVDSL--P----LTALGKPDKKALRARYWEG 518 (524)
T ss_pred EecCC--C----CCccccccHHHHHHHHHhh
Confidence 99998 8 9999999999999999654
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=566.57 Aligned_cols=505 Identities=20% Similarity=0.277 Sum_probs=399.3
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|+++|+++||+++++... + +.++++||+||.++++++|++|.+.|+++||+|+++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~ 70 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRSV----------E---------GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATI 70 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEeec----------c---------CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 699999999999999999997421 1 223579999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++....+.+.+.....+.++.++...+.....
T Consensus 71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (542)
T PRK06018 71 AWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMP-- 148 (542)
T ss_pred cCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccccc--
Confidence 999999999999999999999999999999999999999999999999988877777666666666666554321110
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHH-HHH-HHHHhhCCCCCCCcE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV-ATA-AAIKTLIPNPGRSDV 319 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~-~~~-~~~~~~~~~~~~~d~ 319 (744)
.. .......+.++...... ........++++++|+|||||||.||||++||++++ +.. ......+ ++..+|+
T Consensus 149 ---~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~ 222 (542)
T PRK06018 149 ---QT-TLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADT 222 (542)
T ss_pred ---cc-CccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCE
Confidence 00 00123345555543221 111234466889999999999999999999999753 222 2233345 7889999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCC----cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHH
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGS----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~----~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~ 395 (744)
++..+|++|.+++...+.++..|+++++.. +..+.+ .++++++|++.++|+++..+.+.....
T Consensus 223 ~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-----------~l~~~~~t~~~~~p~~~~~l~~~~~~~-- 289 (542)
T PRK06018 223 MLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYE-----------LLDTEKVTFTAGVPTVWLMLLQYMEKE-- 289 (542)
T ss_pred EEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHH-----------HHHhcCCceeecCcHHHHHHHhccccc--
Confidence 999999999999877777889999998732 333333 399999999999999999887532110
Q ss_pred hhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceec
Q 004568 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (744)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~ 475 (744)
....+++|.+++||+++++++.+++++ +++++++
T Consensus 290 ---------------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~ 323 (542)
T PRK06018 290 ---------------------------------------------GLKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRH 323 (542)
T ss_pred ---------------------------------------------CCCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEe
Confidence 001247999999999999999999999 8999999
Q ss_pred ccChhhhcccccccCCCC-----------CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCC
Q 004568 476 AYGLTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~ 544 (744)
.||+||++.+.+...... ....++|+|.++++++|+| +++..++ .+.+..|||+++|++++.|||++
T Consensus 324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy~~~ 401 (542)
T PRK06018 324 AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAYYRV 401 (542)
T ss_pred eecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhhhcC
Confidence 999999987765432111 0135789999999999999 5665543 22235799999999999999983
Q ss_pred CcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---C
Q 004568 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---N 621 (744)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~ 621 (744)
+...+. .+ |||+|||+|+++++|+++++||.+|+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +
T Consensus 402 ---~~~~~~--~~--~~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 473 (542)
T PRK06018 402 ---DGEILD--DD--GFFDTGDVATIDAYGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDE 473 (542)
T ss_pred ---cccEec--CC--cEEEcCCEEEEcCCccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCc
Confidence 223332 44 89999999999999999999999999996 7999999999999999999999999998765 3
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCcc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFE 701 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 701 (744)
.+.++|++.++. ..+ .+++.+ +++ .+++.|+
T Consensus 474 ~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~ 504 (542)
T PRK06018 474 RPLLIVQLKPGE----------TAT---------------REEILK-----------------------YMD-GKIAKWW 504 (542)
T ss_pred eeEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHH-hhCcccc
Confidence 588888876532 111 134555 666 5899999
Q ss_pred ceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 702 IPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 702 ~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|..+++++++ | +|++||++|++|+++|.+
T Consensus 505 ~P~~i~~v~~i--P----~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 505 MPDDVAFVDAI--P----HTATGKILKTALREQFKD 534 (542)
T ss_pred CCcEEEEeccC--C----CCCcchhhHHHHHHHHhc
Confidence 99999999999 8 999999999999998865
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=564.89 Aligned_cols=483 Identities=21% Similarity=0.284 Sum_probs=385.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA 158 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~gd~V 158 (744)
...|+.++|.+++. ++++|+++ +++ ++||+||.++++++|++|+++ |+++|++|
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V 57 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPHV 57 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 44689999988875 78999976 444 799999999999999999997 89999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+++.....+..+. +.+. ++..+.
T Consensus 58 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~---- 129 (529)
T PRK07867 58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS---- 129 (529)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----
Confidence 99999999999999999999999999999999999999999999999999988766554432 1221 222111
Q ss_pred cCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCc
Q 004568 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD 318 (744)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d 318 (744)
..+.+++..............++++++|+|||||||.||||++||+++..........+ ++..+|
T Consensus 130 --------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d 194 (529)
T PRK07867 130 --------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDD 194 (529)
T ss_pred --------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCccc
Confidence 11333332211111122345678999999999999999999999999998888888877 888999
Q ss_pred EEEecCChHHHHHHHHH-HHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 319 VYLAYLPLAHVLELAAE-SIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 319 ~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
++++.+|++|.+++... +.++..|+++++ +++..+++. ++++++|++.++|+.+..++......
T Consensus 195 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~~- 262 (529)
T PRK07867 195 VCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPERP- 262 (529)
T ss_pred EEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCcc-
Confidence 99999999999998765 456889999988 444444444 99999999999999998776421000
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCcee
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~ 474 (744)
....+++|. ++||+++++.. ..+.+.+|++++
T Consensus 263 ----------------------------------------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~ 294 (529)
T PRK07867 263 ----------------------------------------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVV 294 (529)
T ss_pred ----------------------------------------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEE
Confidence 000136784 56888888775 455666799999
Q ss_pred cccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCC------------CcEEEE-ccccccccc
Q 004568 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP------------RGEIVV-GGFNVTAGY 541 (744)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~------------~GEl~v-~g~~v~~gY 541 (744)
+.||+||++..++... ....+++|.|+++ ++++|++++.. +++|+ .|||++ +|++++.||
T Consensus 295 ~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~---~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy 367 (529)
T PRK07867 295 DGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTE---CPPAEDADGRLLNADEAIGELVNTAGPGGFEGY 367 (529)
T ss_pred EeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCC---CCCCccccccccccCCcceEEEEecCCcccccc
Confidence 9999999986654322 2345789999999 77888555544 45666 899999 999999999
Q ss_pred cCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC
Q 004568 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (744)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~ 621 (744)
+++++.+.+.| .+ |||+|||+|+++++|+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.
T Consensus 368 ~~~~~~~~~~~---~~--g~~~TGD~~~~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~ 441 (529)
T PRK07867 368 YNDPEADAERM---RG--GVYWSGDLAYRDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPV 441 (529)
T ss_pred cCChHhhhhhh---cC--CeEeeccEEEEeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCC
Confidence 99999999988 66 89999999999999999999999999997 79999999999999999999999999998653
Q ss_pred ---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHh-cCC
Q 004568 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKA-AKL 697 (744)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L 697 (744)
.++|+|++.++. ..+ . +++++ ++++ ..|
T Consensus 442 ~g~~~~a~vv~~~~~----------~~~-----------~----~~l~~-----------------------~~~~~~~l 473 (529)
T PRK07867 442 VGDQVMAALVLAPGA----------KFD-----------P----DAFAE-----------------------FLAAQPDL 473 (529)
T ss_pred CCeeEEEEEEECCCC----------CCC-----------H----HHHHH-----------------------HHHhhccC
Confidence 588888876532 000 1 33444 4442 259
Q ss_pred CCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 698 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 698 ~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
++|++|..+++++++ | +|++||++|++|+++..+
T Consensus 474 ~~~~~P~~i~~~~~i--P----~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 474 GPKQWPSYVRVCAEL--P----RTATFKVLKRQLSAEGVD 507 (529)
T ss_pred CcccCCeEEEEeecc--C----CCCCcceeHHHHHHhcCC
Confidence 999999999999999 8 999999999999987643
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=566.47 Aligned_cols=483 Identities=19% Similarity=0.263 Sum_probs=378.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH-NVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i 160 (744)
.|+.++|.+++ +|+++|+++ ++. .+||+||.++++++|..|.+.|+ ++||+|++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i 57 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV 57 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 57889998765 799999986 343 69999999999999999999999 89999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+.... .+.++.+ .++..
T Consensus 58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~~----- 129 (540)
T PRK13388 58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDTP----- 129 (540)
T ss_pred ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccch-----
Confidence 999999999999999999999999999999999999999999999999987765554431 2233322 22210
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~ 320 (744)
.+.++...... ..+.....++++++++|||||||.||||+++|+++...+......+ ++.++|++
T Consensus 130 -------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~ 194 (540)
T PRK13388 130 -------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVC 194 (540)
T ss_pred -------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEE
Confidence 12222221111 1111235679999999999999999999999999998888887777 89999999
Q ss_pred EecCChHHHHHHHHHH-HHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHh
Q 004568 321 LAYLPLAHVLELAAES-IMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396 (744)
Q Consensus 321 l~~~Pl~h~~g~~~~~-~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~ 396 (744)
++.+|++|.+++...+ .++..|+++++. ++..+++. ++++++|++..+|+.+..+......
T Consensus 195 l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~l~~l~~~~~~---- 259 (540)
T PRK13388 195 YVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDD-----------VRRYGATYFNYVGKPLAYILATPER---- 259 (540)
T ss_pred EEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCCCC----
Confidence 9999999999887654 468899999873 33444444 9999999999999998877642100
Q ss_pred hcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecc
Q 004568 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476 (744)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~ 476 (744)
. .....+++.+ .|++++++..+.+.+.+++++++.
T Consensus 260 ~-------------------------------------------~~~~~~l~~~--~G~~~~~~~~~~~~~~~~~~l~~~ 294 (540)
T PRK13388 260 P-------------------------------------------DDADNPLRVA--FGNEASPRDIAEFSRRFGCQVEDG 294 (540)
T ss_pred c-------------------------------------------cccccceEEE--ECCCCCHHHHHHHHHHhCCceecc
Confidence 0 0001256643 366678888888888889999999
Q ss_pred cChhhhcccccccCCCCCCCCccCCCcCccEEE-----------EEecCCCCccCCCCCCCCcEEEEc-cccccccccCC
Q 004568 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIK-----------LVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNN 544 (744)
Q Consensus 477 YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~-----------i~d~~~~~~~~~~~~g~~GEl~v~-g~~v~~gY~~~ 544 (744)
||+||++.+++... ....+++|+|++|+++. ++| ++|..+ .+++..|||+++ |++++.||+++
T Consensus 295 YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~ 369 (540)
T PRK13388 295 YGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNN 369 (540)
T ss_pred cccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCC
Confidence 99999987665432 23467999999997653 222 222221 134678999998 99999999999
Q ss_pred CcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---
Q 004568 545 PGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--- 621 (744)
Q Consensus 545 ~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~--- 621 (744)
|+.+.+.| .+ |||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.
T Consensus 370 ~~~t~~~~---~~--g~~~TGD~~~~~~dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~ 443 (540)
T PRK13388 370 PEATAERM---RH--GMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGD 443 (540)
T ss_pred hHHHHHHh---hc--CceeccceEEEcCCCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCc
Confidence 99999998 56 89999999999999999999999999997 79999999999999999999999999988653
Q ss_pred eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHh-cCCCCc
Q 004568 622 YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKA-AKLDKF 700 (744)
Q Consensus 622 ~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~~ 700 (744)
.++++|++.++. +.+ . +++++ +++. ..|+.|
T Consensus 444 ~~~~~v~~~~~~----------~~~-----------~----~~l~~-----------------------~l~~~~~l~~~ 475 (540)
T PRK13388 444 QVMAALVLRDGA----------TFD-----------P----DAFAA-----------------------FLAAQPDLGTK 475 (540)
T ss_pred eeEEEEEECCCC----------cCC-----------H----HHHHH-----------------------HHHhhccCCcc
Confidence 467777765532 000 1 23444 4431 269999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
++|..+++++++ | +|++||++|++|++...+
T Consensus 476 ~~P~~~~~v~~i--P----~t~~GKv~R~~L~~~~~~ 506 (540)
T PRK13388 476 AWPRYVRIAADL--P----STATNKVLKRELIAQGWA 506 (540)
T ss_pred cCCcEEEEeccC--C----CCCcceeeHHhHHHhccC
Confidence 999999999999 8 999999999999987644
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=559.52 Aligned_cols=472 Identities=23% Similarity=0.305 Sum_probs=378.0
Q ss_pred HHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHH
Q 004568 89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW 168 (744)
Q Consensus 89 ~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 168 (744)
+.+++.+||++|+.+.. ++ +.+||+||.++++++|+.|.+.|+++||+|+++++|+++|
T Consensus 2 ~~~a~~~p~~~a~~~~~----------~~-----------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~ 60 (488)
T PRK09088 2 AFHARLQPQRLAAVDLA----------LG-----------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL 60 (488)
T ss_pred chhhhhCCCceEEEecC----------CC-----------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 45778999999987521 23 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCC
Q 004568 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248 (744)
Q Consensus 169 vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 248 (744)
++++|||+++|++++|+++.++.+++.+++++++++++|+++...... .
T Consensus 61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~------------------------- 109 (488)
T PRK09088 61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------T------------------------- 109 (488)
T ss_pred HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------c-------------------------
Confidence 999999999999999999999999999999999999999986543210 0
Q ss_pred CceEeeHHHHHHcCCC-CCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChH
Q 004568 249 NWTVSSFSEVEKLGKR-SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~ 327 (744)
....++++...... .........++++++++|||||||.||+|++||+++...+....... .+..+|++++.+|++
T Consensus 110 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~ 186 (488)
T PRK09088 110 --DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMF 186 (488)
T ss_pred --cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchH
Confidence 00111111111000 01112234568899999999999999999999999998877777666 788999999999999
Q ss_pred HHHHHHHHH-HHHHhcceEEeCC---cccccccchhhccCccccce--EecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004568 328 HVLELAAES-IMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVS--VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (744)
Q Consensus 328 h~~g~~~~~-~~l~~G~~~v~~~---~~~~~~~~~~~~~~~~~~i~--~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (744)
|.+++...+ .++..|+++++.+ +...+.. +. ++++|+++++|++++.+.+....
T Consensus 187 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~~~P~~~~~l~~~~~~--------- 246 (488)
T PRK09088 187 HIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR-----------LGDPALGITHYFCVPQMAQAFRAQPGF--------- 246 (488)
T ss_pred HHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHhhccCCcEEeeHHHHHHHHHhCcCc---------
Confidence 999987654 5688899988743 2222222 43 58999999999999887642100
Q ss_pred hhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhh
Q 004568 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (744)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE 481 (744)
.....+++|.+++||++++.+..+.+... |+++++.||+||
T Consensus 247 --------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE 287 (488)
T PRK09088 247 --------------------------------------DAAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSE 287 (488)
T ss_pred --------------------------------------CccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccc
Confidence 00012489999999999999987777654 899999999999
Q ss_pred hcccccccCC---CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCc
Q 004568 482 TCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558 (744)
Q Consensus 482 ~~~~~~~~~~---~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g 558 (744)
++.+...... ...+.+++|.|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.|. .+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~--~~- 360 (488)
T PRK09088 288 AGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND---CPAGVPGELLLRGPNLSPGYWRRPQATARAFT--GD- 360 (488)
T ss_pred cccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC---CcCCCceEEEEECCccchhhcCChhhhhhhhc--CC-
Confidence 9876543221 123457999999999999998 55554 56889999999999999999999999998885 45
Q ss_pred ceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHHH
Q 004568 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALE 635 (744)
Q Consensus 559 ~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~ 635 (744)
|||+|||+|++|++|+++|.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.+++ +..+++|++.++.
T Consensus 361 -g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-- 436 (488)
T PRK09088 361 -GWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGA-- 436 (488)
T ss_pred -CCeeecceEEEcCCCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCC--
Confidence 89999999999999999999999999997 6999999999999999999999999998764 3577888876531
Q ss_pred HHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCC
Q 004568 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTP 715 (744)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p 715 (744)
..+ .+++.+ +++ .++++|++|..|++++++ |
T Consensus 437 --------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~~~~i--P 467 (488)
T PRK09088 437 --------PLD---------------LERIRS-----------------------HLS-TRLAKYKVPKHLRLVDAL--P 467 (488)
T ss_pred --------CCC---------------HHHHHH-----------------------HHH-hhCcCCCCCCEEEEcccC--C
Confidence 000 134555 666 589999999999999998 8
Q ss_pred CCCccccccccChHHHHHHHHHH
Q 004568 716 EAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 716 ~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+|++||++|++|++++.+.
T Consensus 468 ----~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 468 ----RTASGKLQKARLRDALAAG 486 (488)
T ss_pred ----CCCCCceeHHHHHHHHHhc
Confidence 9999999999999988764
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=560.66 Aligned_cols=491 Identities=21% Similarity=0.249 Sum_probs=391.0
Q ss_pred CHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004568 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (744)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 162 (744)
++.+.|.+.++.+|+++|+.. .+. .+||+||.+++.++|..|.+.|+++|++|++++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~ 57 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG 57 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 478999999999999999975 333 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCC
Q 004568 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242 (744)
Q Consensus 163 ~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 242 (744)
+|+.++++++|||+++|++++|+++.++.+++.++++.++++.++++......... .. ++.++
T Consensus 58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~--------- 120 (502)
T TIGR01734 58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLS--------- 120 (502)
T ss_pred CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEch---------
Confidence 99999999999999999999999999999999999999999999998765322110 01 11110
Q ss_pred ccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEe
Q 004568 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322 (744)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~ 322 (744)
...++..... .........++++++++|||||||.||+|+++|+++...+.+....+ .+..+|+++.
T Consensus 121 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~ 187 (502)
T TIGR01734 121 -----------ALEQAETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLN 187 (502)
T ss_pred -----------HhhhhhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEe
Confidence 0111111111 11112334678999999999999999999999999999988888777 8889999999
Q ss_pred cCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhh
Q 004568 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402 (744)
Q Consensus 323 ~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 402 (744)
.+|++|.+++...+.++..|+++++.++....+ +..++..+.++++|.+.++|++++.++.....
T Consensus 188 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~---------- 252 (502)
T TIGR01734 188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNN-----FKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF---------- 252 (502)
T ss_pred ecCceechhHHHHHHHHHCCCEEEEcCHHHhcC-----HHHHHHHHHHcCCeEEEEChhHHHHHHhcccc----------
Confidence 999999999988888999999998854322111 12233338999999999999998876532100
Q ss_pred hHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccChhh
Q 004568 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTE 481 (744)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~TE 481 (744)
.....++++.+++||+++++++.+.+.+.+ ++++++.||+||
T Consensus 253 -------------------------------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE 295 (502)
T TIGR01734 253 -------------------------------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE 295 (502)
T ss_pred -------------------------------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence 001125899999999999999998888776 789999999999
Q ss_pred hcccccccCC-----CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC
Q 004568 482 TCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (744)
Q Consensus 482 ~~~~~~~~~~-----~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (744)
++..++.... ......++|.|.++++++|+| +++.. +++|+.|||+|+|++++.||+++++.+.+.|.. .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~ 370 (502)
T TIGR01734 296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEP---LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFS-H 370 (502)
T ss_pred ceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCC---CCCCCeeEEEEccccccccccCCcccchHhhee-C
Confidence 8765443221 112336899999999999999 45544 568899999999999999999999999988742 3
Q ss_pred CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecC--CC--CeEEEEEEcCHH
Q 004568 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP--FH--NYCVALVVPSHK 632 (744)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~--~~--~~~~A~vv~~~~ 632 (744)
+|.+||+|||+|++|++ +++++||.+|+||+ +|++|+|.+||++|.+||.|.+|+|++.. +. ..++++|++...
T Consensus 371 ~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~ 448 (502)
T TIGR01734 371 EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETE 448 (502)
T ss_pred CCcEEEECCCEEEEECC-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccc
Confidence 44589999999999966 99999999999997 79999999999999999999999999853 22 368999988764
Q ss_pred HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCC
Q 004568 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEP 712 (744)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~ 712 (744)
... . ...+.+++++ +++ .+|++|++|+.+++++++
T Consensus 449 ~~~-----------------~----~~~~~~~i~~-----------------------~~~-~~l~~~~~P~~~~~v~~l 483 (502)
T TIGR01734 449 DFE-----------------K----EFQLTKAIKK-----------------------ELK-KSLPAYMIPRKFIYRDQL 483 (502)
T ss_pred ccc-----------------c----chhhHHHHHH-----------------------HHh-hhChhhcCCcEEEEcccc
Confidence 210 0 1122244555 555 589999999999999999
Q ss_pred CCCCCCccccccccChHHHHHHHH
Q 004568 713 WTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 713 ~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
| +|++||++|++|++++.
T Consensus 484 --P----~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 484 --P----LTANGKIDRKALAEEVN 501 (502)
T ss_pred --C----CCCCCcccHHHHHHhhc
Confidence 8 99999999999999764
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=559.97 Aligned_cols=498 Identities=22% Similarity=0.279 Sum_probs=403.8
Q ss_pred CCHHHHHHHH-HHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 82 STMAALFEQS-CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~-a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+...+++.++ ++.+||++|++. ++. .+||.||.++++++|+.|.+.|+++|++|++
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l 60 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVLL 60 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4567778887 677999999975 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++....+.+.+....++..+.++..+....
T Consensus 61 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (508)
T TIGR02262 61 LMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA--- 137 (508)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc---
Confidence 99999999999999999999999999999999999999999999999998887777766666666777666543211
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH-HHhhCCCCCCCcE
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIPNPGRSDV 319 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~d~ 319 (744)
....+.++...... ...+....++++++++|||||||.||||+++|+++...+.. ....+ ++.++|+
T Consensus 138 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~ 205 (508)
T TIGR02262 138 ----------GEVQLAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDV 205 (508)
T ss_pred ----------ccccHHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCE
Confidence 11234444322111 11223455789999999999999999999999999988766 34455 8899999
Q ss_pred EEecCChHHHHHHHHH-HHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 320 YLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
+++.+|++|.+++... +.++..|+++++.+... + ...++..++++++|++.++|+++..+.+....
T Consensus 206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------ 272 (508)
T TIGR02262 206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGERP--T-----PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------ 272 (508)
T ss_pred EEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCC--C-----HHHHHHHHHHHCCcEEecchHHHHHHhcCccc------
Confidence 9999999999998654 46788999988843210 0 11233339999999999999988876542100
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccC
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG 478 (744)
+...++++|.+++||+++++++.+.|.+.+|+++++.||
T Consensus 273 -----------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG 311 (508)
T TIGR02262 273 -----------------------------------------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIG 311 (508)
T ss_pred -----------------------------------------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCcc
Confidence 001124899999999999999999999989999999999
Q ss_pred hhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCc
Q 004568 479 LTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERG 558 (744)
Q Consensus 479 ~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g 558 (744)
+||++.+.+.+.......+++|+|++|++++|+| +++.. +++|+.|||+++|++++.||+++++.+++.| .+
T Consensus 312 ~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~---~~- 383 (508)
T TIGR02262 312 STEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQD---VAAGEPGELLISGPSSATMYWNNRAKTRDTF---QG- 383 (508)
T ss_pred ccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCccccccCCCHHHhHhhh---hc-
Confidence 9999977665544444568999999999999999 66654 5688999999999999999999999999888 56
Q ss_pred ceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHHH
Q 004568 559 MCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALE 635 (744)
Q Consensus 559 ~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~ 635 (744)
+||+|||+++++++|.++++||.||+||+ +|++|+|.+||++|.+||+|.++++++.++. ..++|++++.++.
T Consensus 384 -~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 459 (508)
T TIGR02262 384 -EWTRSGDKYVRNDDGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ-- 459 (508)
T ss_pred -CceeccceEEEcCCccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC--
Confidence 89999999999999999999999999998 5999999999999999999999999997654 3578888876542
Q ss_pred HHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCC
Q 004568 636 KWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTP 715 (744)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p 715 (744)
.. .+...+.|++ +++ .+|+.|++|..+++++++ |
T Consensus 460 --------~~------------~~~~~~~i~~-----------------------~~~-~~l~~~~~p~~i~~~~~i--P 493 (508)
T TIGR02262 460 --------DI------------DTALETELKE-----------------------HVK-DRLAPYKYPRWIVFVDDL--P 493 (508)
T ss_pred --------cc------------ccccHHHHHH-----------------------HHH-HhcccCCCCceEEEecCC--C
Confidence 00 0112245555 666 589999999999999999 8
Q ss_pred CCCccccccccChHHHHH
Q 004568 716 EAGLVTAALKIKREQLKA 733 (744)
Q Consensus 716 ~~~~~t~~GKi~R~~l~~ 733 (744)
+|++||++|++|++
T Consensus 494 ----~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 494 ----KTATGKIQRFKLRE 507 (508)
T ss_pred ----CCCCCcEehhhccC
Confidence 99999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=562.37 Aligned_cols=510 Identities=22% Similarity=0.306 Sum_probs=396.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|.++++++|+++|+++ ++. .+||+||.++++++|+.|.+.|+++||+|++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i 78 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVAI 78 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+....... ..+.++..........
T Consensus 79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (557)
T PRK07059 79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGF 157 (557)
T ss_pred ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEecccccccc
Confidence 999999999999999999999999999999999999999999999999987766555543322 2333333221110000
Q ss_pred CC-c--------c---CCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH
Q 004568 241 SG-V--------S---GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (744)
Q Consensus 241 ~~-~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (744)
.. . . ..........++++...............++++++|+|||||||.||+|+++|++++.++....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~ 237 (557)
T PRK07059 158 KGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQME 237 (557)
T ss_pred cccccccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHh
Confidence 00 0 0 0000112234555554433222223456789999999999999999999999999987765443
Q ss_pred hhCC---CC---CCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCC-cccccccchhhccCccccceEecceEEeech
Q 004568 309 TLIP---NP---GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (744)
Q Consensus 309 ~~~~---~~---~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~-~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P 380 (744)
..+. .. ...+.+++.+|++|.+++.. .+.++..|++.++.. +.. ...++..++++++|.+.++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~i~~~~vt~~~~~p 309 (557)
T PRK07059 238 AWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRD--------IPGFIKELKKYQVHIFPAVN 309 (557)
T ss_pred hhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcC--------HHHHHHHHHHhCCeeeecCH
Confidence 3220 11 12457888999999988754 456677888766632 211 11123338999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHH
Q 004568 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (744)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~ 460 (744)
+++..+...... .....+++|.++.||+++++.
T Consensus 310 ~~~~~l~~~~~~-----------------------------------------------~~~~~~~l~~~~~gg~~~~~~ 342 (557)
T PRK07059 310 TLYNALLNNPDF-----------------------------------------------DKLDFSKLIVANGGGMAVQRP 342 (557)
T ss_pred HHHHHHHcCcCc-----------------------------------------------CcCCchhheEEEeccccCCHH
Confidence 999988653100 001124789999999999999
Q ss_pred HHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccc
Q 004568 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (744)
Q Consensus 461 ~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~ 539 (744)
+.+.+.+.+|+++++.||+||++.+++...... ...+++|+|+++++++|+| +++.. +++|+.|||+++|++++.
T Consensus 343 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~ 418 (557)
T PRK07059 343 VAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGND---LPLGEPGEICIRGPQVMA 418 (557)
T ss_pred HHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccch
Confidence 999998888999999999999998776554332 2357999999999999998 56654 568999999999999999
Q ss_pred cccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCC
Q 004568 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (744)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~ 619 (744)
|||++++.+.+.|. .+ |||+|||+|++++||+++++||.+|+||+ +|++|+|.+||++|.+||+|.+++|++.++
T Consensus 419 gY~~~~~~~~~~~~--~~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~ 493 (557)
T PRK07059 419 GYWNRPDETAKVMT--AD--GFFRTGDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPD 493 (557)
T ss_pred hhhcCHHHHhhhcc--cC--CceecCcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEeccc
Confidence 99999999998885 55 89999999999999999999999999997 699999999999999999999999999775
Q ss_pred C---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
. +.++++|+..... .+ .+++.+ +++ ..
T Consensus 494 ~~~ge~~~~~v~~~~~~-----------~~---------------~~~l~~-----------------------~~~-~~ 523 (557)
T PRK07059 494 EHSGEAVKLFVVKKDPA-----------LT---------------EEDVKA-----------------------FCK-ER 523 (557)
T ss_pred CCCCeeEEEEEEeCCCC-----------CC---------------HHHHHH-----------------------HHH-Hh
Confidence 4 3588888765321 00 134555 666 58
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
|+.|++|..|.+++++ | +|++||++|+.|+++
T Consensus 524 l~~~~~P~~i~~v~~~--P----~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 524 LTNYKRPKFVEFRTEL--P----KTNVGKILRRELRDG 555 (557)
T ss_pred cccccCCcEEEEeccC--C----CCcccceeHHHHHhh
Confidence 9999999999999999 8 999999999999764
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=549.52 Aligned_cols=426 Identities=18% Similarity=0.215 Sum_probs=349.6
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEE
Q 004568 130 WQTYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC 208 (744)
Q Consensus 130 ~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 208 (744)
-+.|+||.++++++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 37999999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 004568 209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288 (744)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG 288 (744)
+.+..... ... . . .......++++++++|||||||
T Consensus 99 ~~~~~~~~---------------~~~----~------------------------~--~~~~~~~~~~~~~i~~TSGTTG 133 (452)
T PRK07445 99 LDQLKLSH---------------PPP----L------------------------P--SQGILPNLETGWIMIPTGGSSG 133 (452)
T ss_pred cCcccccc---------------CCC----C------------------------C--ccccCCCCCCcEEEEeCCCCCC
Confidence 76532100 000 0 0 0011235689999999999999
Q ss_pred cchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccc
Q 004568 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368 (744)
Q Consensus 289 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i 368 (744)
.||||++||+++++.+......+ .+.+ ++.++.+|++|.+|+...+.++..|+++++.+...+... ....
T Consensus 134 ~PKgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~ 203 (452)
T PRK07445 134 QIRFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELP 203 (452)
T ss_pred CCcEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhh
Confidence 99999999999998888777766 6654 467889999999999877888999999988543222111 0114
Q ss_pred eEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEE
Q 004568 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448 (744)
Q Consensus 369 ~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 448 (744)
..+++|++.++|++++.+.+... ...+++|
T Consensus 204 ~~~~~t~~~~vP~~l~~l~~~~~--------------------------------------------------~~l~~l~ 233 (452)
T PRK07445 204 PNPSDFFLSLVPTQLQRLLQLRP--------------------------------------------------QWLAQFR 233 (452)
T ss_pred hhcCceEEEehHHHHHHHHhhCh--------------------------------------------------hhhhcce
Confidence 46789999999999998864100 0014899
Q ss_pred EEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCCC
Q 004568 449 FMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526 (744)
Q Consensus 449 ~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~ 526 (744)
.+++||+++++++.+.++. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|+ +|+
T Consensus 234 ~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~------------~g~ 300 (452)
T PRK07445 234 TILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQ 300 (452)
T ss_pred EEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc------------CCC
Confidence 9999999999999888876 5899999999999986655443332 235789999999999997 236
Q ss_pred CcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcC
Q 004568 527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISS 606 (744)
Q Consensus 527 ~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~ 606 (744)
.|||+|+|++++.||++++.. .+ |||+|||+|++|+||+|+|.||.||+||+ +|++|+|.|||++|.+|
T Consensus 301 ~Gel~v~g~~~~~gY~~~~~~--------~~--g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 301 TGNITIQAQSLALGYYPQILD--------SQ--GIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILAT 369 (452)
T ss_pred cceEEEeCCccchhhcCCccC--------CC--CEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhC
Confidence 799999999999999985421 34 89999999999999999999999999996 69999999999999999
Q ss_pred cCcceEEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccc
Q 004568 607 DYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRY 683 (744)
Q Consensus 607 p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 683 (744)
|+|.+|+|++.+++. .++|+|++.++.. + .+++++
T Consensus 370 p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~-------------------~-------~~~l~~---------------- 407 (452)
T PRK07445 370 GLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI-------------------S-------LEELKT---------------- 407 (452)
T ss_pred CCcceEEEEeccCcCCCcEEEEEEEeCCCCC-------------------C-------HHHHHH----------------
Confidence 999999999998753 5899998764310 0 135555
Q ss_pred hhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 684 KTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 684 ~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+++ .+|+.|++|+.+++++++ | +|++||++|++|++.|.++|+
T Consensus 408 -------~~~-~~L~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~~~~ 450 (452)
T PRK07445 408 -------AIK-DQLSPFKQPKHWIPVPQL--P----RNPQGKINRQQLQQIAVQRLG 450 (452)
T ss_pred -------HHH-HhCCcccCCeEEEEecCC--C----CCCCcccCHHHHHHHHHHhhC
Confidence 666 589999999999999998 8 999999999999999999885
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=561.66 Aligned_cols=514 Identities=21% Similarity=0.256 Sum_probs=391.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.+.|.+.++.+|+++|+++ ++. .+||+||.++++++|..|.+.|+++||+|+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~ 76 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI 76 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5789999999999999999985 332 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCC-------CeeEEEEecC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-------TIKNVIYFEN 234 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~ii~~~~ 234 (744)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...+.+..+...+. ....++.++.
T Consensus 77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (567)
T PLN02479 77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD 156 (567)
T ss_pred CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence 999999999999999999999999999999999999999999999999887655544332211 1123444432
Q ss_pred CCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC
Q 004568 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (744)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (744)
..... ...... .......+.+++...............+++++++|||||||.||||++||+++..........+ ++
T Consensus 157 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 233 (567)
T PLN02479 157 PTCDP-KSLQYA-LGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GM 233 (567)
T ss_pred CcCCc-cccccc-cccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CC
Confidence 21110 000000 0112345666654322111111222345678899999999999999999999877666555556 78
Q ss_pred CCCcEEEecCChHHHHHHHHHHH-HHHhcceEEe--CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAAESI-MLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~~~~-~l~~G~~~v~--~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
..+|++++.+|++|..++...+. .+..|.++++ +++..+.+. ++++++|++.++|+++..+.+...
T Consensus 234 ~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~ 302 (567)
T PLN02479 234 NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSA-----------IANYGVTHFCAAPVVLNTIVNAPK 302 (567)
T ss_pred CCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhhhh
Confidence 89999999999999999766544 4566666655 444444444 999999999999999998875321
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
... ....++++.++++|+++++.+.+.+.+. ++
T Consensus 303 ~~~----------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~ 335 (567)
T PLN02479 303 SET----------------------------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GF 335 (567)
T ss_pred hcc----------------------------------------------cccccceeEEEEcCCCCCHHHHHHHHhc-CC
Confidence 000 0012478999999999999999988875 89
Q ss_pred ceecccChhhhcccccccCC---------C-CCC-CCccCCCcCccE-EEEEecCCCCccCCCCCCCCcEEEEccccccc
Q 004568 472 PIGQAYGLTETCAGSTFSEW---------D-DPS-VGRVGPPVPCCY-IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (744)
Q Consensus 472 ~i~~~YG~TE~~~~~~~~~~---------~-~~~-~~~vG~p~~~~~-v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~ 539 (744)
++++.||+||+++.++.... . ... ..+.|.|.++++ ++|+|++++..++ .+-++.|||+++|++++.
T Consensus 336 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~-~~g~~~GEl~v~g~~~~~ 414 (567)
T PLN02479 336 RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP-ADGKTMGEIVMRGNMVMK 414 (567)
T ss_pred ceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccC-CCCCCceEEEEeccchhh
Confidence 99999999998654432210 0 001 146788888886 8898865555432 111257999999999999
Q ss_pred cccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCC
Q 004568 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (744)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~ 619 (744)
|||++++.|.+.| .+ |||+|||+|++|++|+++|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.++
T Consensus 415 GY~~~~~~t~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~ 488 (567)
T PLN02479 415 GYLKNPKANEEAF---AN--GWFHSGDLGVKHPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPD 488 (567)
T ss_pred hhhcCcccccchh---cC--CceecceeEEEcCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccc
Confidence 9999999999999 56 89999999999999999999999999997 699999999999999999999999999875
Q ss_pred C---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcC
Q 004568 620 H---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 620 ~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
. ..++++|++.++. ... + .+...++|.+ +++ .+
T Consensus 489 ~~~~~~~~~~v~~~~~~----------~~~-------~---~~~~~~~l~~-----------------------~~~-~~ 524 (567)
T PLN02479 489 ERWGESPCAFVTLKPGV----------DKS-------D---EAALAEDIMK-----------------------FCR-ER 524 (567)
T ss_pred hhcCceeEEEEEecCcc----------ccc-------c---hhhhHHHHHH-----------------------HHH-hh
Confidence 4 3689999887642 000 0 1122345666 666 68
Q ss_pred CCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 697 LDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 697 L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
|+.|++|+.+++ .++ | +|++||++|++|++.+.+
T Consensus 525 l~~~~~P~~~~~-~~i--P----~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 525 LPAYWVPKSVVF-GPL--P----KTATGKIQKHVLRAKAKE 558 (567)
T ss_pred cccccCCceEEe-ccC--C----CCCccCeeHHHHHHHHHh
Confidence 999999998877 556 7 999999999999988765
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=561.81 Aligned_cols=510 Identities=22% Similarity=0.288 Sum_probs=396.0
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.++|+++++.+|+++|+.+ .++ .+||+||.++++++|..|.+.|+++|++|+++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~ 89 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF 89 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6899999999999999999986 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++++++++||+++|++++|++|..+.+++.+++++++++++++++...+.+....... .++.+++..........
T Consensus 90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~ 168 (567)
T PRK06178 90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE 168 (567)
T ss_pred CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence 99999999999999999999999999999999999999999999999998877776655433 34444443321110000
Q ss_pred CccCCCC-----CceEeeHHHHHHcCCC--CCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCC
Q 004568 242 GVSGGIS-----NWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314 (744)
Q Consensus 242 ~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 314 (744)
....... ......+.++...... .........++++++|+|||||||.||+|++||++++..+.........+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~ 248 (567)
T PRK06178 169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG 248 (567)
T ss_pred cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence 0000000 0000112222221111 11112345679999999999999999999999999988766554432267
Q ss_pred CCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 315 ~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
.++|++++++|++|.+|+.. .+.++..|+++++. ++..++.. ++++++|.+.++|..+..+.+..
T Consensus 249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~l~~~~ 317 (567)
T PRK06178 249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA-----------VERYRVTRTVMLVDNAVELMDHP 317 (567)
T ss_pred CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCC
Confidence 88999999999999999864 56679999999883 34444444 99999999999999888775421
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEE--EecCCCCHHHHHHHHhh
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI--CGGAPLSADSQRFINIC 468 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~gG~~l~~~~~~~~~~~ 468 (744)
. . .....++++.+. +.++++++++.+.++..
T Consensus 318 ~--------~---------------------------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
T PRK06178 318 R--------F---------------------------------------AEYDLSSLRQVRVVSFVKKLNPDYRQRWRAL 350 (567)
T ss_pred C--------C---------------------------------------CCCCcchheeeeeccccccCCHHHHHHHHHH
Confidence 0 0 000113566554 34589999999999988
Q ss_pred cCCceec-ccChhhhcccccccCC---C----CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccccccc
Q 004568 469 MGAPIGQ-AYGLTETCAGSTFSEW---D----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (744)
Q Consensus 469 ~g~~i~~-~YG~TE~~~~~~~~~~---~----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~g 540 (744)
+|..++. .||+||++..++.... . ...++++|+|+||++++|+|++++.. ++.|+.|||+|+|++++.|
T Consensus 351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~---~~~g~~Gel~v~g~~v~~g 427 (567)
T PRK06178 351 TGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL---LPLGAEGEIVVRTPSLLKG 427 (567)
T ss_pred hCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCc---CCCCCceEEEEECCccccc
Confidence 8877764 7999999866544321 1 12346799999999999999666665 5688999999999999999
Q ss_pred ccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC
Q 004568 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620 (744)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~ 620 (744)
||++++.+.+.| .+ |||+|||+|++++||+++|+||++|+||+ +|++|+|.|||++|.++|+|.+++|++.++.
T Consensus 428 Y~~~~~~~~~~~---~d--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~ 501 (567)
T PRK06178 428 YWNKPEATAEAL---RD--GWLHTGDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDP 501 (567)
T ss_pred ccCChhhhhhcc---cC--CceeecceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCc
Confidence 999999999888 67 89999999999999999999999999997 6999999999999999999999999998755
Q ss_pred ---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCC
Q 004568 621 ---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKL 697 (744)
Q Consensus 621 ---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 697 (744)
+.++++|++.++. ..+ .++|++ +++ .+|
T Consensus 502 ~~g~~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l 532 (567)
T PRK06178 502 DKGQVPVAFVQLKPGA----------DLT---------------AAALQA-----------------------WCR-ENM 532 (567)
T ss_pred ccCcceEEEEEeCCCC----------cCC---------------HHHHHH-----------------------HHH-hcC
Confidence 3588999886532 000 134555 666 589
Q ss_pred CCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 698 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 698 ~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+.|++|. +++++++ | +|++||++|++|++.++++
T Consensus 533 ~~~~~p~-i~~v~~i--P----~t~~GKv~r~~l~~~~~~~ 566 (567)
T PRK06178 533 AVYKVPE-IRIVDAL--P----MTATGKVRKQDLQALAEEL 566 (567)
T ss_pred cccCCce-EEEeccC--C----CCCccceeHHHHHHHHHhh
Confidence 9999996 8888988 8 9999999999999988764
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-63 Score=557.17 Aligned_cols=484 Identities=20% Similarity=0.257 Sum_probs=374.1
Q ss_pred HHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHH
Q 004568 90 QSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF 169 (744)
Q Consensus 90 ~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v 169 (744)
.+|+++|+++|+.+.+ ++ +.+||+||.++++++|+.|.++|+++||+|+++++|+++++
T Consensus 5 ~~a~~~p~~~a~~~~~----------~~-----------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~ 63 (501)
T PRK13390 5 THAQIAPDRPAVIVAE----------TG-----------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL 63 (501)
T ss_pred hhhhhCCCCcEEEecC----------CC-----------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 5678899999998631 23 37999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCC
Q 004568 170 IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249 (744)
Q Consensus 170 v~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 249 (744)
+++|||+++|++++|+++.++++++.+++++++++++++++............. ...+.+....
T Consensus 64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~------------- 127 (501)
T PRK13390 64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADL---PLRLSFGGEI------------- 127 (501)
T ss_pred HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc---ceEEEecCcc-------------
Confidence 999999999999999999999999999999999999999876543332221111 1112221100
Q ss_pred ceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhh--chHHHHHHHH----HHHhhCCCCCCCcEEEec
Q 004568 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVATAA----AIKTLIPNPGRSDVYLAY 323 (744)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~--sh~~l~~~~~----~~~~~~~~~~~~d~~l~~ 323 (744)
....++++...... +.....+++++|+|||||||.||||++ +|.++..... .....+ .+..+|++++.
T Consensus 128 ~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 201 (501)
T PRK13390 128 DGFGSFEAALAGAG-----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSS 201 (501)
T ss_pred cccccHHHHhcccC-----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEec
Confidence 01122333322110 111122357999999999999999995 5666554321 122334 78889999999
Q ss_pred CChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004568 324 LPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (744)
Q Consensus 324 ~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (744)
+|++|.+++...+..+..|+++++. ++..+++. |+++++|++.++|+++..+.+......
T Consensus 202 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------ 264 (501)
T PRK13390 202 APIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGH-----------VERYRITVTQMVPTMFVRLLKLDADVR------ 264 (501)
T ss_pred ccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhccchhc------
Confidence 9999999886655567789999883 33444444 999999999999999988864211000
Q ss_pred hhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChh
Q 004568 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (744)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~T 480 (744)
.....+++|.+++||+++++++.+.+.+.+|.++++.||+|
T Consensus 265 ---------------------------------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~t 305 (501)
T PRK13390 265 ---------------------------------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSST 305 (501)
T ss_pred ---------------------------------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeeccc
Confidence 00111478999999999999999999988899999999999
Q ss_pred hhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcc
Q 004568 481 ETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559 (744)
Q Consensus 481 E~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~ 559 (744)
|+++++...... ....+++|+|+++ .++|+| +++.. +++|+.|||+|+|++++.||+++++.|.+.|. ..+.
T Consensus 306 E~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~--~~~~ 378 (501)
T PRK13390 306 EAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNE---LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQH--PAHP 378 (501)
T ss_pred ccCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecCCccccccCChhhhHHhhc--cCCC
Confidence 998765443322 2345799999999 799998 56654 57899999999999999999999999999885 2223
Q ss_pred eeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHH
Q 004568 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEK 636 (744)
Q Consensus 560 gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~ 636 (744)
+|++|||+|++|+||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+++|++.++.. .++++|++.++.
T Consensus 379 ~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~--- 454 (501)
T PRK13390 379 FWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI--- 454 (501)
T ss_pred ceEEcCceEEECCCCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC---
Confidence 89999999999999999999999999997 69999999999999999999999999988653 588888876431
Q ss_pred HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCC
Q 004568 637 WAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPE 716 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~ 716 (744)
.. .+...++|.+ +++ .+|+.|++|..+++++++ |
T Consensus 455 -------~~------------~~~~~~~l~~-----------------------~~~-~~l~~~~~P~~~~~~~~i--P- 488 (501)
T PRK13390 455 -------RG------------SDELARELID-----------------------YTR-SRIAHYKAPRSVEFVDEL--P- 488 (501)
T ss_pred -------Cc------------chhhHHHHHH-----------------------HHH-HhcccCCCCcEEEEeccC--C-
Confidence 00 0111245555 666 589999999999999999 8
Q ss_pred CCccccccccChHHHH
Q 004568 717 AGLVTAALKIKREQLK 732 (744)
Q Consensus 717 ~~~~t~~GKi~R~~l~ 732 (744)
+|++||++|++|+
T Consensus 489 ---~t~~GKi~r~~L~ 501 (501)
T PRK13390 489 ---RTPTGKLVKGLLR 501 (501)
T ss_pred ---CCCccceehhhcC
Confidence 9999999999874
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=557.53 Aligned_cols=507 Identities=25% Similarity=0.337 Sum_probs=391.3
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..|+.++|+++++++|+++|+++ +++ .+||.||.++++++|++|.+.|+++||+|++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i 76 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL 76 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh--hhHHHHhhccCCCeeEEEEecCCCCC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFENDGSE 238 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~ 238 (744)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++.+|+++.. .+.+.+.... ..+..+++.+.....
T Consensus 77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (541)
T TIGR03205 77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG 155 (541)
T ss_pred ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence 9999999999999999999999999999999999999999999999998632 1222222111 123444444332110
Q ss_pred c-CCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC----CC
Q 004568 239 K-DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----PN 313 (744)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----~~ 313 (744)
. ..............+++++...... ........++++++++|||||||.||+|+++|+++........... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 234 (541)
T TIGR03205 156 KVGTPQAPIPADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRAT 234 (541)
T ss_pred cccccccccCCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhccccccc
Confidence 0 0000001112234556666543211 1112345678999999999999999999999999886554321111 02
Q ss_pred CCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHH
Q 004568 314 PGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389 (744)
Q Consensus 314 ~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~ 389 (744)
....+++++.+|++|.+++... +.++..|+++++. ++..+.+. |+++++|++.++|+++..+.+.
T Consensus 235 ~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~ 303 (541)
T TIGR03205 235 RGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD-----------IEEKRATVFPGVPTMWIALAND 303 (541)
T ss_pred CCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCeEeechHHHHHHHHhC
Confidence 2345799999999999887664 5668899988773 33344433 9999999999999999887642
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc
Q 004568 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469 (744)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 469 (744)
.. ......+++|.+++||+++++++.+++.+.+
T Consensus 304 ~~-----------------------------------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~ 336 (541)
T TIGR03205 304 PS-----------------------------------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKT 336 (541)
T ss_pred cc-----------------------------------------------ccccCccccceEEEccccCCHHHHHHHHHHh
Confidence 10 0001124799999999999999999998888
Q ss_pred CCceecccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccc
Q 004568 470 GAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548 (744)
Q Consensus 470 g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t 548 (744)
++++++.||+||++..++..... ...++++|+|++++.++|++.++.+. .+++|+.|||+++|++++.|||++++.+
T Consensus 337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~ 414 (541)
T TIGR03205 337 GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTK--VLPPGEVGELRIRGPNVTRGYWNRPEES 414 (541)
T ss_pred CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCc--cCCCCCeeEEEEecCCccccccCChhhh
Confidence 99999999999998776654432 23457899999999999876433322 2568899999999999999999999999
Q ss_pred ccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEE
Q 004568 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVA 625 (744)
Q Consensus 549 ~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A 625 (744)
++.| .+ +||+|||+++++++|+++|+||.||+||+ +|++|+|.+||++|.+||+|.+++|++.+++ +.+++
T Consensus 415 ~~~~---~~--~~~~TGD~~~~~~~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~ 488 (541)
T TIGR03205 415 AEAF---VG--DRFLTGDIGYMDTDGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKA 488 (541)
T ss_pred Hhhh---cc--CCcccCceEEEcCCceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEE
Confidence 9998 56 79999999999999999999999999996 6999999999999999999999999998754 35888
Q ss_pred EEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeE
Q 004568 626 LVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAK 705 (744)
Q Consensus 626 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~ 705 (744)
++++.++. ... + . +++.+ +++ ++|++|++|..
T Consensus 489 ~v~~~~~~----------~~~-------~---~----~~l~~-----------------------~~~-~~l~~~~~P~~ 520 (541)
T TIGR03205 489 FVKLRPGA----------KPF-------S---L----DELRA-----------------------FLA-GKLGKHELPVA 520 (541)
T ss_pred EEEECCCC----------CcC-------C---H----HHHHH-----------------------HHH-hhcccccCCcE
Confidence 88876531 000 0 1 34455 555 58999999999
Q ss_pred EEEecCCCCCCCCccccccccChHHHH
Q 004568 706 IKLMPEPWTPEAGLVTAALKIKREQLK 732 (744)
Q Consensus 706 i~~~~~~~~p~~~~~t~~GKi~R~~l~ 732 (744)
|++++++ | +|++||++|++|+
T Consensus 521 i~~~~~i--P----~t~~gK~~r~~l~ 541 (541)
T TIGR03205 521 VEFVDEL--P----RTPVGKLSRHELR 541 (541)
T ss_pred EEEeccC--C----CCcccceeHhhcC
Confidence 9999999 8 9999999999873
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=561.32 Aligned_cols=509 Identities=23% Similarity=0.319 Sum_probs=394.7
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAA 159 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~-~~Gv~~gd~V~ 159 (744)
..++.++|.++++++|+++|+++ +++ .+||+||.++++++|+.|. +.|+++||+|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~ 80 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVA 80 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 36899999999999999999986 443 6999999999999999996 68999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCC-C
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS-E 238 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~ 238 (744)
++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++++.....+.......+ ...++..+.... .
T Consensus 81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (560)
T PRK08751 81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG 159 (560)
T ss_pred EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence 99999999999999999999999999999999999999999999999999887666655544433 233333221000 0
Q ss_pred -cC------------CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHH
Q 004568 239 -KD------------SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305 (744)
Q Consensus 239 -~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~ 305 (744)
.. ...... .......+.+................++++++++|||||||.||||++||+++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~ 238 (560)
T PRK08751 160 FPKAALVNFVVKYVKKLVPEY-RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQ 238 (560)
T ss_pred cccchhhhhhhhhhhcccccc-CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHH
Confidence 00 000000 0011233455444332222223445678999999999999999999999999988877
Q ss_pred HHHhhCC---CCCC-CcEEEecCChHHHHHHHHH-HHHHHhcceEEe-CCcccccccchhhccCccccceEecceEEeec
Q 004568 306 AIKTLIP---NPGR-SDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAV 379 (744)
Q Consensus 306 ~~~~~~~---~~~~-~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~-~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~ 379 (744)
.....+. .+.. ++++++.+|++|.+++... +.++..|+++++ .++... ..++..++++++|++.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~ 310 (560)
T PRK08751 239 QAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDM--------PGFVKELKKTRFTAFTGV 310 (560)
T ss_pred HHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCH--------HHHHHHHHhcceeEecCh
Confidence 6655441 1333 4677889999999998653 455677777665 222111 112333999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCH
Q 004568 380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459 (744)
Q Consensus 380 P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~ 459 (744)
|.++..+.+.... .+...+++|.+++||+++++
T Consensus 311 p~~~~~l~~~~~~-----------------------------------------------~~~~l~~lr~v~~gG~~~~~ 343 (560)
T PRK08751 311 NTLFNGLLNTPGF-----------------------------------------------DQIDFSSLKMTLGGGMAVQR 343 (560)
T ss_pred HHHHHHHHcCcCc-----------------------------------------------CCcchhhheeeeeCCCCCCH
Confidence 9999887652100 00112479999999999999
Q ss_pred HHHHHHHhhcCCceecccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEcccccc
Q 004568 460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538 (744)
Q Consensus 460 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~ 538 (744)
++.+.+++.+|+++++.||+||++..++..... ....+++|.|+++++++++| +++.. ++.|+.|||+|+|+.++
T Consensus 344 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~~~~~~ 419 (560)
T PRK08751 344 SVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV---LAIGEIGELCIKGPQVM 419 (560)
T ss_pred HHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCccc
Confidence 999999998899999999999998876655432 23457899999999999999 66654 56889999999999999
Q ss_pred ccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecC
Q 004568 539 AGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADP 618 (744)
Q Consensus 539 ~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~ 618 (744)
.||+++++.+.+.|. .+ |||+|||+|++|++|+++++||.+|+||+ +|++|+|.+||++|..||+|.+|+|++.+
T Consensus 420 ~gy~~~~~~~~~~~~--~~--g~~~TGD~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~ 494 (560)
T PRK08751 420 KGYWKRPEETAKVMD--AD--GWLHTGDIARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVP 494 (560)
T ss_pred hhhcCChhhhhhccc--cC--CCccccceEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecC
Confidence 999999999998885 45 89999999999999999999999999997 69999999999999999999999999987
Q ss_pred CCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhc
Q 004568 619 FHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAA 695 (744)
Q Consensus 619 ~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (744)
+.. .++++|+..... .+ . +++++ +++ .
T Consensus 495 ~~~~ge~~~~~v~~~~~~-----------~~-----------~----~~l~~-----------------------~~~-~ 524 (560)
T PRK08751 495 DEKSGEIVKVVIVKKDPA-----------LT-----------A----EDVKA-----------------------HAR-A 524 (560)
T ss_pred CCCCCceEEEEEEcCCCC-----------CC-----------H----HHHHH-----------------------HHH-H
Confidence 653 466766654211 00 1 23444 555 4
Q ss_pred CCCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 696 KLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 696 ~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
+|+.|++|..|++++++ | +|++||++|++|++.
T Consensus 525 ~l~~~~~P~~v~~v~~l--P----~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 525 NLTGYKQPRIIEFRKEL--P----KTNVGKILRRELRDA 557 (560)
T ss_pred hhhhccCCeEEEEhhhC--C----CCccccccHHHHHHh
Confidence 79999999999999999 8 999999999999876
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=560.63 Aligned_cols=514 Identities=26% Similarity=0.347 Sum_probs=393.0
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
.+++.++|.+.++++|+++|+++ +++ .+||+||.+++.++|+.|.+.|+++||+|++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i 79 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAI 79 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 36899999999999999999986 343 6999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCC--C
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS--E 238 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~--~ 238 (744)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++++++.....+....... ....++....... .
T Consensus 80 ~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (563)
T PRK06710 80 MLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-KIEHVIVTRIADFLPF 158 (563)
T ss_pred ECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-ccceeEEecccccccc
Confidence 999999999999999999999999999999999999999999999999887655443332211 1222222111000 0
Q ss_pred cCCC------------ccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH
Q 004568 239 KDSG------------VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (744)
Q Consensus 239 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (744)
.... ............|..+.... ..........++++++++|||||||.||+|+++|+++......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~ 237 (563)
T PRK06710 159 PKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237 (563)
T ss_pred ccccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHH
Confidence 0000 00000000001122221111 1111111234578999999999999999999999999865443
Q ss_pred HHhhCCCC-CCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHH
Q 004568 307 IKTLIPNP-GRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384 (744)
Q Consensus 307 ~~~~~~~~-~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~ 384 (744)
....+... ..++++++.+|++|.+++... +.++..|+++++.++... ..++..++++++|++.++|+++.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~ 309 (563)
T PRK06710 238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDM--------KMVFEAIKKHKVTLFPGAPTIYI 309 (563)
T ss_pred HHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCH--------HHHHHHHHHcCCeEEeccHHHHH
Confidence 33322133 345688999999999988654 457889999988433211 12233399999999999999998
Q ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHH
Q 004568 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464 (744)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~ 464 (744)
.+.+.... .....+++|.+++||+++++++.++
T Consensus 310 ~l~~~~~~-----------------------------------------------~~~~~~~lr~v~~gg~~~~~~~~~~ 342 (563)
T PRK06710 310 ALLNSPLL-----------------------------------------------KEYDISSIRACISGSAPLPVEVQEK 342 (563)
T ss_pred HHHcCCcc-----------------------------------------------ccCChhhhhheeeCCCcCCHHHHHH
Confidence 87642100 0001147899999999999999999
Q ss_pred HHhhcCCceecccChhhhcccccccCC-CCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccC
Q 004568 465 INICMGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN 543 (744)
Q Consensus 465 ~~~~~g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~ 543 (744)
+.+.+|+++++.||+||++.++..... .....+++|+|.+++.++++|++++.. ++.|+.|||+++|+.++.||++
T Consensus 343 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~---~~~g~~Gel~v~g~~~~~gY~~ 419 (563)
T PRK06710 343 FETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA---LPPGEIGEIVVKGPQIMKGYWN 419 (563)
T ss_pred HHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCcc---CCCCCceEEEEecCccchhhhC
Confidence 998889999999999999876543322 223457899999999999999666654 5688999999999999999999
Q ss_pred CCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---
Q 004568 544 NPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH--- 620 (744)
Q Consensus 544 ~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~--- 620 (744)
+++.+...| .+ |||+|||+|+++++|+++++||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++.
T Consensus 420 ~~~~~~~~~---~~--g~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g 493 (563)
T PRK06710 420 KPEETAAVL---QD--GWLHTGDVGYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRG 493 (563)
T ss_pred ChHHHhhhc---cc--CcccccceEEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcC
Confidence 999999888 56 89999999999999999999999999997 6999999999999999999999999998764
Q ss_pred CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCc
Q 004568 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKF 700 (744)
Q Consensus 621 ~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 700 (744)
..++++|++.++. ..+ .+++++ +++ .+|+.|
T Consensus 494 ~~~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~ 524 (563)
T PRK06710 494 ETVKAFVVLKEGT----------ECS---------------EEELNQ-----------------------FAR-KYLAAY 524 (563)
T ss_pred ceeEEEEEECCCC----------CCC---------------HHHHHH-----------------------HHH-Hhcccc
Confidence 3588888876531 000 134555 665 589999
Q ss_pred cceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 701 EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 701 ~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
++|..+.+++++ | +|++||++|++|++++..+
T Consensus 525 ~~P~~~~~v~~i--P----~t~~GKi~r~~L~~~~~~~ 556 (563)
T PRK06710 525 KVPKVYEFRDEL--P----KTTVGKILRRVLIEEEKRK 556 (563)
T ss_pred cCCcEEEEcccC--C----CCccchhhHHHHHHHHhhc
Confidence 999999999999 8 9999999999999988654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=603.07 Aligned_cols=499 Identities=20% Similarity=0.210 Sum_probs=388.3
Q ss_pred CCCCHHHHHHHHHHhCCC-CcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEE
Q 004568 80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V 158 (744)
...++.+.|.++++++|+ +.|+.+. ++ +++||+||+++++++|+.|++ |+++||+|
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V 685 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP-----------VN-----------GPLTYRKLLTGAFVLGRKLKK-NTPPGENV 685 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC-----------CC-----------CccCHHHHHHHHHHHHHHHHh-cCCCCCeE
Confidence 357899999999999975 5665421 22 369999999999999999975 99999999
Q ss_pred EEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHH--HHhhccCCCeeEEEEecCCC
Q 004568 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 159 ~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~ 236 (744)
+++++|+++++++++||+++|++++|+|+.++.+++.+++++++++++++++...+.. .......+....++.+++..
T Consensus 686 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (1140)
T PRK06814 686 GVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR 765 (1140)
T ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh
Confidence 9999999999999999999999999999999999999999999999999997655432 11222222233444443211
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCC
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 316 (744)
... .....+.+....... ........++|+++|+|||||||.||||++||+++.+.+......+ ++.+
T Consensus 766 ~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~ 833 (1140)
T PRK06814 766 AQI----------GLADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSP 833 (1140)
T ss_pred ccC----------ChHHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCC
Confidence 000 000011111111110 1111235789999999999999999999999999999988888877 8899
Q ss_pred CcEEEecCChHHHHHHHH-HHHHHHhcceEEeCC-cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHH
Q 004568 317 SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394 (744)
Q Consensus 317 ~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~-~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~ 394 (744)
+|++++.+|++|.+++.. .+.++..|+++++.+ +... ..+.+.++++++|++.++|++++.+.+...
T Consensus 834 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--- 902 (1140)
T PRK06814 834 EDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHY--------RIIPELIYDTNATILFGTDTFLNGYARYAH--- 902 (1140)
T ss_pred cCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccH--------HHHHHHHHhcCCEEEEecHHHHHHHHhhcc---
Confidence 999999999999999844 567799999998843 2111 111223889999999999999988764210
Q ss_pred HhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCcee
Q 004568 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474 (744)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~ 474 (744)
..+.+++|.+++||+++++++.+.+.+.+|++++
T Consensus 903 ----------------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~ 936 (1140)
T PRK06814 903 ----------------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRIL 936 (1140)
T ss_pred ----------------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEE
Confidence 0112489999999999999999999998999999
Q ss_pred cccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccccccccc
Q 004568 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (744)
Q Consensus 475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (744)
+.||+||++..++.......+.+++|+|+|++++++.+. ++ .++.|||+++|++++.||+++++.+. +..
T Consensus 937 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~-~~-------~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~ 1006 (1140)
T PRK06814 937 EGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPV-PG-------IDEGGRLFVRGPNVMLGYLRAENPGV--LEP 1006 (1140)
T ss_pred eccccccccceEEecCCCCCCCCcCCccCCCCeEEEeec-CC-------CCCceEEEEeCCCcchhhcCCCCCCc--ccc
Confidence 999999999877665554556789999999999999873 21 35789999999999999999765332 211
Q ss_pred CCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCH
Q 004568 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSH 631 (744)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~ 631 (744)
..+ |||+|||+|++|+||+++++||.||+||+ +|++|+|.|||++|.+||.|.+++|++.+++. .+++++...+
T Consensus 1007 ~~~--g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~ 1083 (1140)
T PRK06814 1007 PAD--GWYDTGDIVTIDEEGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD 1083 (1140)
T ss_pred CCC--CeEecCCEEEECCCCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC
Confidence 134 89999999999999999999999999997 69999999999999999999999999988653 4555543211
Q ss_pred HHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecC
Q 004568 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE 711 (744)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~ 711 (744)
.. .+++.+ ++++.++++|++|+.++++++
T Consensus 1084 ~~----------------------------~~~l~~-----------------------~~~~~~l~~~~~P~~i~~v~~ 1112 (1140)
T PRK06814 1084 AT----------------------------RAAFLA-----------------------HAKAAGASELMVPAEIITIDE 1112 (1140)
T ss_pred cC----------------------------HHHHHH-----------------------HHHHcCCCcccCCcEEEEecC
Confidence 10 135555 666457999999999999999
Q ss_pred CCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 712 PWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 712 ~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+ | +|++||++|++|++.+++...
T Consensus 1113 l--P----~t~~GKi~r~~L~~~~~~~~~ 1135 (1140)
T PRK06814 1113 I--P----LLGTGKIDYVAVTKLAEEAAA 1135 (1140)
T ss_pred c--C----CCCCCCCcHHHHHHHHHHhhc
Confidence 9 8 999999999999999887654
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=549.83 Aligned_cols=490 Identities=21% Similarity=0.244 Sum_probs=395.3
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.++|+++++.+|+++|+.. ++. .+||+||.++++++|..|.+.|+++|++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~ 58 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF 58 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5788999999999999999875 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+.+++++++||+++|++++|+++.++.+++.++++.+++++++++...... ..
T Consensus 59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------- 114 (503)
T PRK04813 59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL----------------- 114 (503)
T ss_pred cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc-----------------
Confidence 999999999999999999999999999999999999999999999998764100 00
Q ss_pred CccCCCCCceEeeHHHHHHcC--CCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcE
Q 004568 242 GVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV 319 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~ 319 (744)
......++++.... ...........++++++++|||||||.||+|.++|+++...+......+ .+..+++
T Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~ 186 (503)
T PRK04813 115 -------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQ 186 (503)
T ss_pred -------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCce
Confidence 01112222222111 1111112345678899999999999999999999999999888887777 8899999
Q ss_pred EEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 320 ~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
++..+|++|..++...+.++..|+++++.+.....+ ...++..++++++|++..+|++++.+......
T Consensus 187 ~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~-----~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~------- 254 (503)
T PRK04813 187 FLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTAN-----FKQLFETLPQLPINVWVSTPSFADMCLLDPSF------- 254 (503)
T ss_pred eeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcC-----HHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-------
Confidence 999999999999887788899999998844322211 12233338999999999999999876532100
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCceecccC
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG 478 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~~~YG 478 (744)
.....+++|.++++|+++++.+.+++.+.+ ++++++.||
T Consensus 255 ----------------------------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG 294 (503)
T PRK04813 255 ----------------------------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYG 294 (503)
T ss_pred ----------------------------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcc
Confidence 011125899999999999999999998887 789999999
Q ss_pred hhhhcccccccCCC-----CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccc
Q 004568 479 LTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553 (744)
Q Consensus 479 ~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~ 553 (744)
+||++..++..... .....++|+|.++++++|+| +++.. +++|+.|||+|+|++++.|||++++.|.+.|.
T Consensus 295 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 370 (503)
T PRK04813 295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTK---LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFF 370 (503)
T ss_pred cchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCC---CCCCCceEEEEeccccccccCCChhHhHHhhc
Confidence 99997655432211 12346899999999999998 56654 45789999999999999999999999998885
Q ss_pred cCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 004568 554 VDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPS 630 (744)
Q Consensus 554 ~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~ 630 (744)
. .+|.+||+|||+|++ ++|++++.||.||+||+ +|++|+|.+||+.|.+||+|++++|++.++. +.++++|++.
T Consensus 371 ~-~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 447 (503)
T PRK04813 371 T-FDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPK 447 (503)
T ss_pred c-CCCceeEECCceEEe-eCCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEec
Confidence 2 244579999999999 89999999999999997 6999999999999999999999999986643 3588999887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec
Q 004568 631 HKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP 710 (744)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~ 710 (744)
++... ....+.+++++ +++ .+|+.|++|..|++++
T Consensus 448 ~~~~~---------------------~~~~~~~~l~~-----------------------~~~-~~l~~~~~P~~i~~~~ 482 (503)
T PRK04813 448 EEDFE---------------------REFELTKAIKK-----------------------ELK-ERLMEYMIPRKFIYRD 482 (503)
T ss_pred ccccc---------------------ccchhHHHHHH-----------------------HHH-hhCccccCCeEEEEec
Confidence 63210 01223345555 666 5899999999999999
Q ss_pred CCCCCCCCccccccccChHHHHHHHH
Q 004568 711 EPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 711 ~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
++ | +|++||++|++|++.+.
T Consensus 483 ~~--P----~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 483 SL--P----LTPNGKIDRKALIEEVN 502 (503)
T ss_pred cC--C----CCCCCCCcHHHHHHHhc
Confidence 99 8 99999999999998875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=551.58 Aligned_cols=473 Identities=21% Similarity=0.239 Sum_probs=377.1
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
..++.+.|.++++++||++|+++ ++. .+||+||.++++++|+.|++.|+++||+|++
T Consensus 34 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i 90 (516)
T PRK13383 34 GTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVGV 90 (516)
T ss_pred CCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 47899999999999999999975 332 5999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcC
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|++++++++|||+++|++++|+++.++.+++.+++++++++.+++++.....+..... .++.++...
T Consensus 91 ~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~---- 160 (516)
T PRK13383 91 MCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT---- 160 (516)
T ss_pred ECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch----
Confidence 9999999999999999999999999999999999999999999999999876655443211 122221110
Q ss_pred CCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH--HHHHHhhCCCCCCCc
Q 004568 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT--AAAIKTLIPNPGRSD 318 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~~d 318 (744)
.... ... ..+...++.++|+|||||||.||||+++|...... .......+ ++..+|
T Consensus 161 ---------------~~~~----~~~--~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d 218 (516)
T PRK13383 161 ---------------AGAE----ESG--GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS 218 (516)
T ss_pred ---------------hhhh----cCC--CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence 0000 000 11123456789999999999999999999843221 12222334 778899
Q ss_pred EEEecCChHHHHHHHHHHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHH
Q 004568 319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395 (744)
Q Consensus 319 ~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~ 395 (744)
+++..+|++|.+++...+.++..|+++++ +++..+++. ++++++|.+.++|+++..+.+.......
T Consensus 219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 287 (516)
T PRK13383 219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQ-----------ASLHRADAFTAVPVVLARILELPPRVRA 287 (516)
T ss_pred eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHHHhccccccc
Confidence 99999999999999877788999999987 344444444 8999999999999999888653110000
Q ss_pred hhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceec
Q 004568 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ 475 (744)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~ 475 (744)
....+++|.+++||+++++++.+.+.+.+|..+++
T Consensus 288 ---------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~ 322 (516)
T PRK13383 288 ---------------------------------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYN 322 (516)
T ss_pred ---------------------------------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhh
Confidence 00124899999999999999999999999999999
Q ss_pred ccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCccccccccc
Q 004568 476 AYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554 (744)
Q Consensus 476 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~ 554 (744)
.||+||++..+...... ....+++|+|+|+++++|+| +++.. +++|+.|||+++|+.++.||++++. ..+
T Consensus 323 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-- 393 (516)
T PRK13383 323 GYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRP---VGPRVTGRIFVGGELAGTRYTDGGG---KAV-- 393 (516)
T ss_pred cccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCC---CCCCCceEEEEecCcccccccCCch---hhe--
Confidence 99999998665544322 22457899999999999998 55554 5688999999999999999998753 223
Q ss_pred CCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCH
Q 004568 555 DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSH 631 (744)
Q Consensus 555 ~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~ 631 (744)
.+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.+||.+|.+||.|.+++|++.++. +.+.++|++.+
T Consensus 394 -~~--g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~ 469 (516)
T PRK13383 394 -VD--GMTSTGDMGYLDNAGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHP 469 (516)
T ss_pred -ec--CceecceeEEEcCCccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECC
Confidence 45 89999999999999999999999999997 7999999999999999999999999998754 35888888765
Q ss_pred HHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecC
Q 004568 632 KALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE 711 (744)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~ 711 (744)
.. +.+ .++|++ +++ .+|+.|++|..|+++++
T Consensus 470 ~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~p~~i~~v~~ 500 (516)
T PRK13383 470 GS----------GVD---------------AAQLRD-----------------------YLK-DRVSRFEQPRDINIVSS 500 (516)
T ss_pred CC----------CCC---------------HHHHHH-----------------------HHH-HhcccCCCCcEEEEeCC
Confidence 31 000 134555 555 57899999999999999
Q ss_pred CCCCCCCccccccccChHHHH
Q 004568 712 PWTPEAGLVTAALKIKREQLK 732 (744)
Q Consensus 712 ~~~p~~~~~t~~GKi~R~~l~ 732 (744)
+ | +|++||++|++|.
T Consensus 501 i--P----~t~~gKi~r~~L~ 515 (516)
T PRK13383 501 I--P----RNPTGKVLRKELP 515 (516)
T ss_pred C--C----CCCCCcCcHHHhC
Confidence 8 8 9999999999873
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=585.84 Aligned_cols=518 Identities=19% Similarity=0.199 Sum_probs=383.9
Q ss_pred hccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceee
Q 004568 43 ARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEK 122 (744)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~ 122 (744)
|+.. ++.+.++...+...+.+...... +...|+.++|+++++++||++|+++ +++
T Consensus 417 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~---- 471 (994)
T PRK07868 417 ANRS---VRTLAVETARTLPRLARLGQIND------HTRISLGRIIAEQARDAPKGEFLLF------------DGR---- 471 (994)
T ss_pred hhhh---hHHHHHHHHHhhhhHHHhhhcCC------CCCccHHHHHHHHHHHCCCCeEEEe------------CCc----
Confidence 5555 77788888888888755444111 4446899999999999999999986 443
Q ss_pred ccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcC
Q 004568 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202 (744)
Q Consensus 123 ~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 202 (744)
.+||+||+++++++|+.|+++|+++||+|+|+++|+++++++++||+++|++++|++|. +++.+++++++
T Consensus 472 -------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~ 541 (994)
T PRK07868 472 -------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGG 541 (994)
T ss_pred -------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccC
Confidence 69999999999999999999999999999999999999999999999999999999985 68999999999
Q ss_pred ceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCC--CCCCCCCCCCeEEE
Q 004568 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVI 280 (744)
Q Consensus 203 ~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dd~a~i 280 (744)
++++|++....+.+... ...+++++...... ...........++++.......+ .......++|+++|
T Consensus 542 ~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I 611 (994)
T PRK07868 542 VTEIITDPTNLEAARQL------PGRVLVLGGGESRD----LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFI 611 (994)
T ss_pred CeEEEEChHHHHHHHhc------CceEEEecCCcccc----ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEE
Confidence 99999998776554331 13455544321100 00000000111111110000000 00112236899999
Q ss_pred EecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHH-HHhcceEEe---CCccccccc
Q 004568 281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGCAIGY---GSTLTMTDT 356 (744)
Q Consensus 281 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~-l~~G~~~v~---~~~~~~~~~ 356 (744)
+|| ||||.||++.++|.+...........+ .+..+|++++.+|++|++++...+.+ +..|+++++ +++..+.+.
T Consensus 612 iyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~ 689 (994)
T PRK07868 612 AFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQE 689 (994)
T ss_pred EEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHH
Confidence 999 578888888888877665555555555 78899999999999999999876655 445555555 344555555
Q ss_pred chhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHH
Q 004568 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436 (744)
Q Consensus 357 ~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (744)
|+++++|+++++|++++.+.+....
T Consensus 690 -----------I~~~~vT~~~~~Ps~l~~L~~~~~~-------------------------------------------- 714 (994)
T PRK07868 690 -----------VRQYGVTVVSYTWAMLREVVDDPAF-------------------------------------------- 714 (994)
T ss_pred -----------HHHhCCcEEEeHHHHHHHHHhCcCC--------------------------------------------
Confidence 9999999999999999988752100
Q ss_pred HHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC-CceecccChhhhcccccccCCCCCCCCccCCCcCcc-EEEEEe--
Q 004568 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVS-- 512 (744)
Q Consensus 437 ~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d-- 512 (744)
.....++||.++ |+.+++++.+.+.+.++ ++++|.||+||++...+. ....+.+++|+|+||+ +++|.+
T Consensus 715 ---~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~pg~~~v~i~~~d 787 (994)
T PRK07868 715 ---VLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLPGAGRVELAAYD 787 (994)
T ss_pred ---ccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccCCCCceeEEEec
Confidence 000124789776 34499999999988886 889999999998765432 2234568999999998 777652
Q ss_pred c-------CCCCccCCCCCCCCcEEEEccccccccccCCCccccc--ccccCCCcceeEeeCcEEEEcCCCeEEEEecCC
Q 004568 513 W-------DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE--VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKK 583 (744)
Q Consensus 513 ~-------~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~--~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~ 583 (744)
+ ++.++...+++|+.|||+++|+.. + +|+.+.. .| .+++|||+|||+|++|+||+|+|+||+|
T Consensus 788 ~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~---~~~dgw~~TGDlg~~d~dG~l~~~GR~d 859 (994)
T PRK07868 788 PEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVF---APADTWISTEYLFRRDDDGDYWLVDRRG 859 (994)
T ss_pred CcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhccc---ccCCEEEeccceEEEcCCCCEEEeccCC
Confidence 1 122222225689999999999853 3 4544332 34 2233999999999999999999999999
Q ss_pred CeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHH
Q 004568 584 DIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN--YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEV 661 (744)
Q Consensus 584 d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~--~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 661 (744)
|+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. .++|+|+++++. +.+
T Consensus 860 d~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~----------~~~--------------- 913 (994)
T PRK07868 860 SVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGA----------AIT--------------- 913 (994)
T ss_pred CEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCC----------cCC---------------
Confidence 99997 58899999999999999999999999988653 589999987532 000
Q ss_pred HHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 662 QQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 662 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
.++|++ +|+ .||.||+|+.|++++++ | +|++||++|++|++.
T Consensus 914 ~~~L~~-----------------------~l~--~l~~y~vP~~i~~v~~l--P----~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 914 AADLTE-----------------------ALA--SLPVGLGPDIVHVVPEI--P----LSATYRPTVSALRAA 955 (994)
T ss_pred HHHHHH-----------------------HHH--hCCCCcCCeEEEEeCCC--C----CCccccEehHHHHhc
Confidence 146777 887 38999999999999999 8 999999999999764
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=542.12 Aligned_cols=449 Identities=22% Similarity=0.277 Sum_probs=372.2
Q ss_pred CHHHHH-HHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 83 TMAALF-EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 83 tl~~~~-~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
++.+.. ++.++++|+++|+.. ++. .+||+||.++++++|..|.+.|+++||+|+++
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~ 59 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALR 59 (458)
T ss_pred hhhcChHHHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 344444 566899999999974 333 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++++++++||+++|++++|+++..+.+++.++++++++++++++.+... +.. +....
T Consensus 60 ~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~~----------- 120 (458)
T PRK09029 60 GKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSLH----------- 120 (458)
T ss_pred cCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------ccccc-----------
Confidence 99999999999999999999999999999999999999999999999876422 110 00000
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
+. ...........++++++++|||||||.||||++||++++..+......+ ++.++|+++
T Consensus 121 -------------~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l 180 (458)
T PRK09029 121 -------------LQ------LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWL 180 (458)
T ss_pred -------------cc------cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEE
Confidence 00 0000112334678999999999999999999999999999988888777 888999999
Q ss_pred ecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchh
Q 004568 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT 401 (744)
Q Consensus 322 ~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~ 401 (744)
..+|++|.+++...+.+|..|+++++.+...+.+. + .++|.+..+|+++..+......
T Consensus 181 ~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~--------- 238 (458)
T PRK09029 181 LSLPLFHVSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE--------- 238 (458)
T ss_pred EecCcHhhhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc---------
Confidence 99999999998777778999999998665444433 5 3789999999999887642110
Q ss_pred hhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhh
Q 004568 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481 (744)
Q Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE 481 (744)
..++|.+++||+++++.+.+++... |+++++.||+||
T Consensus 239 ------------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE 275 (458)
T PRK09029 239 ------------------------------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTE 275 (458)
T ss_pred ------------------------------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccc
Confidence 1379999999999999999988864 999999999999
Q ss_pred hcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCccee
Q 004568 482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCW 561 (744)
Q Consensus 482 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw 561 (744)
++...+....+ ...++|+|+++++++|++ |||+|+|++++.||+++++.+.... .+ ||
T Consensus 276 ~~~~~~~~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~~---~~--~~ 333 (458)
T PRK09029 276 MASTVCAKRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLVN---DE--GW 333 (458)
T ss_pred cCcceeccCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCcccccccc---CC--Cc
Confidence 98765543322 235799999999999975 8999999999999999998876443 44 89
Q ss_pred EeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHHHH
Q 004568 562 FYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWA 638 (744)
Q Consensus 562 ~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~ 638 (744)
|+|||+|++| ||+++|.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++|+|+++...
T Consensus 334 ~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~----- 406 (458)
T PRK09029 334 FATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA----- 406 (458)
T ss_pred cCCCCcEEEe-CCEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc-----
Confidence 9999999999 9999999999999997 69999999999999999999999999998763 588988876321
Q ss_pred HHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCC
Q 004568 639 HEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAG 718 (744)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~ 718 (744)
..++|++ +|+ .+|+.|++|..+++++++ |
T Consensus 407 ----------------------~~~~l~~-----------------------~~~-~~l~~~~~P~~~~~~~~~--p--- 435 (458)
T PRK09029 407 ----------------------AVVNLAE-----------------------WLQ-DKLARFQQPVAYYLLPPE--L--- 435 (458)
T ss_pred ----------------------CHHHHHH-----------------------HHH-hhchhccCCeEEEEeccc--c---
Confidence 0145666 777 699999999999999998 7
Q ss_pred ccccccccChHHHHHHHHHHH
Q 004568 719 LVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 719 ~~t~~GKi~R~~l~~~~~~~i 739 (744)
+|.+||++|+.|+++.++..
T Consensus 436 -~t~~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 436 -KNGGIKISRQALKEWVAQQL 455 (458)
T ss_pred -cCcCCCcCHHHHHHHHHhcc
Confidence 89999999999999887643
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-62 Score=543.29 Aligned_cols=451 Identities=24% Similarity=0.315 Sum_probs=367.5
Q ss_pred HHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHH
Q 004568 92 CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIA 171 (744)
Q Consensus 92 a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~ 171 (744)
+++.++++|+++ +++ ++||+||.++++++|..|+ ++|+|+++++|+++|+++
T Consensus 10 ~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~ 61 (471)
T PRK07787 10 AAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLA 61 (471)
T ss_pred hcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHH
Confidence 456788999876 444 7999999999999999996 479999999999999999
Q ss_pred HHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCce
Q 004568 172 FQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251 (744)
Q Consensus 172 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 251 (744)
++||+++|++++|+++..+.+++.++++++++++++++.... ...++.+. . ...
T Consensus 62 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~---~-~~~---------------- 115 (471)
T PRK07787 62 VVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP---V-RLH---------------- 115 (471)
T ss_pred HHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee---e-ecc----------------
Confidence 999999999999999999999999999999999999986311 00111110 0 000
Q ss_pred EeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHH
Q 004568 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE 331 (744)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g 331 (744)
..+ ........++|+++++|||||||.||||+++|+++...+......+ ++.++|++++.+|++|.+|
T Consensus 116 ~~~-----------~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g 183 (471)
T PRK07787 116 ARS-----------WHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVHG 183 (471)
T ss_pred ccc-----------cccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeech
Confidence 000 0011224578999999999999999999999999999988888777 8889999999999999999
Q ss_pred HHH-HHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHH
Q 004568 332 LAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI 407 (744)
Q Consensus 332 ~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~ 407 (744)
+.. .+.++..|+++++. ++..+.+. ++ +++|++.++|+++..+.+....
T Consensus 184 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~-~~~t~~~~~P~~~~~l~~~~~~--------------- 236 (471)
T PRK07787 184 LVLGVLGPLRIGNRFVHTGRPTPEAYAQA-----------LS-EGGTLYFGVPTVWSRIAADPEA--------------- 236 (471)
T ss_pred hHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------Hh-hCceEEEcchHHHHHHHhCccc---------------
Confidence 876 46679999999883 33344443 88 9999999999999888752100
Q ss_pred HHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhccccc
Q 004568 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487 (744)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 487 (744)
....+++|.+++||+++++++.+++.+.++.++++.||+||++..++
T Consensus 237 ---------------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 283 (471)
T PRK07787 237 ---------------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLS 283 (471)
T ss_pred ---------------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCccee
Confidence 00114799999999999999999999989999999999999987655
Q ss_pred ccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCC-CCcEEEEccccccccccCCCcccccccccCCCcceeEeeCc
Q 004568 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGD 566 (744)
Q Consensus 488 ~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGD 566 (744)
........++++|+|+++++++|+| +++..++ ..+ ..|||+++|++++.||+++++.|++.|. .+ |||+|||
T Consensus 284 ~~~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~--~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~--~~--~~~~TGD 356 (471)
T PRK07787 284 TRADGERRPGWVGLPLAGVETRLVD-EDGGPVP--HDGETVGELQVRGPTLFDGYLNRPDATAAAFT--AD--GWFRTGD 356 (471)
T ss_pred cCCCCcccCCcccccCCCcEEEEEC-CCCCCCC--CCCCCceEEEEECcccchhhcCChhhchhccc--CC--CceecCc
Confidence 4443344567899999999999999 4555432 123 3799999999999999999999999985 46 8999999
Q ss_pred EEEEcCCCeEEEEecC-CCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhC
Q 004568 567 IGQVYPDGCLEIIDRK-KDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEAS 642 (744)
Q Consensus 567 lg~~d~dG~l~i~GR~-~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~ 642 (744)
+|++|+||+++++||+ ||++|. +|++|+|.+||++|.+||.|++++|++.++. ..++|+|++....
T Consensus 357 lg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--------- 426 (471)
T PRK07787 357 VAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV--------- 426 (471)
T ss_pred eEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC---------
Confidence 9999999999999996 899996 6999999999999999999999999998765 3588999873311
Q ss_pred CCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCcccc
Q 004568 643 IKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTA 722 (744)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~ 722 (744)
+ . ++|.+ +++ ..|++|++|..|++++++ | +|.
T Consensus 427 ---~-----------~----~~l~~-----------------------~l~-~~l~~~~~P~~i~~~~~i--P----~~~ 458 (471)
T PRK07787 427 ---A-----------A----DELID-----------------------FVA-QQLSVHKRPREVRFVDAL--P----RNA 458 (471)
T ss_pred ---C-----------H----HHHHH-----------------------HHH-hhcccccCCcEEEEeccC--C----CCC
Confidence 0 1 23444 555 589999999999999998 8 999
Q ss_pred ccccChHHHHH
Q 004568 723 ALKIKREQLKA 733 (744)
Q Consensus 723 ~GKi~R~~l~~ 733 (744)
+||++|++|++
T Consensus 459 ~GKi~r~~L~~ 469 (471)
T PRK07787 459 MGKVLKKQLLS 469 (471)
T ss_pred CccccHHHhcc
Confidence 99999999975
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=545.00 Aligned_cols=494 Identities=20% Similarity=0.230 Sum_probs=392.6
Q ss_pred HHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHH
Q 004568 89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW 168 (744)
Q Consensus 89 ~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 168 (744)
...++++||++|+++.. ++ +.+||+||.++++++|+.|.+.|+++|++|+++++|++++
T Consensus 4 ~~~a~~~p~~~a~~~~~----------~~-----------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~ 62 (511)
T PRK13391 4 GIHAQTTPDKPAVIMAS----------TG-----------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY 62 (511)
T ss_pred hhhHhhCCCceEEEecC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 46788999999998631 23 3699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCC
Q 004568 169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248 (744)
Q Consensus 169 vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 248 (744)
+++++||+++|++++|+++.++.+++.+++++++++.++++......+.+.....+.....+..+.....
T Consensus 63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 132 (511)
T PRK13391 63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------- 132 (511)
T ss_pred HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence 9999999999999999999999999999999999999999988877666665555555555554432111
Q ss_pred CceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhh--chHHHHHH---HHHHHhhCCCCCCCcEEEec
Q 004568 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVAT---AAAIKTLIPNPGRSDVYLAY 323 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~--sh~~l~~~---~~~~~~~~~~~~~~d~~l~~ 323 (744)
.....+++..... +. ......++.++++|||||||.||||++ +|.++... .......+ .+..++++++.
T Consensus 133 -~~~~~~~~~~~~~---~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 206 (511)
T PRK13391 133 -EGFVGYAEAVAGL---PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSP 206 (511)
T ss_pred -cccccHHHHhcCC---CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEc
Confidence 1122334333211 11 112234567899999999999999995 56665433 23334445 77889999999
Q ss_pred CChHHHHHHHHHHHHHHhcceEEeC---CcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcch
Q 004568 324 LPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400 (744)
Q Consensus 324 ~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~ 400 (744)
+|++|.+++...+.++..|+++++. ++..+.+. ++++++|++.++|+++..+.+......
T Consensus 207 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~------ 269 (511)
T PRK13391 207 APLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLAL-----------IEEYGVTHTQLVPTMFSRMLKLPEEVR------ 269 (511)
T ss_pred CCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCchhhc------
Confidence 9999999988778889999999884 44444444 999999999999999988764211000
Q ss_pred hhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChh
Q 004568 401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT 480 (744)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~T 480 (744)
.....+++|.+++||+++++++.+.+++.+|..+++.||+|
T Consensus 270 ---------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~t 310 (511)
T PRK13391 270 ---------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAAT 310 (511)
T ss_pred ---------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccc
Confidence 01112589999999999999999999998899999999999
Q ss_pred hhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcc
Q 004568 481 ETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559 (744)
Q Consensus 481 E~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~ 559 (744)
|++.++...... ....+++|+|+++ +++|+| +++.. ++.|+.|||+++|+ ++.||+++++.+.+.|.. + .
T Consensus 311 E~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~---~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~--~-~ 381 (511)
T PRK13391 311 EGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAE---LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHP--D-G 381 (511)
T ss_pred cccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecC-cceEEcCChhHhHHhhcc--C-C
Confidence 998765543322 2345799999999 699998 56654 46889999999999 899999999999988852 2 3
Q ss_pred eeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHH
Q 004568 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEK 636 (744)
Q Consensus 560 gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~ 636 (744)
+||+|||+|+++++|++++.||.||+||+ +|++|+|.|||++|.+||.|.+|+|++.++.. .+++++++..+.
T Consensus 382 ~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~--- 457 (511)
T PRK13391 382 TWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV--- 457 (511)
T ss_pred CEEecCCEEEECCCccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC---
Confidence 89999999999999999999999999997 69999999999999999999999999987653 488888876531
Q ss_pred HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCC
Q 004568 637 WAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPE 716 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~ 716 (744)
.. + +.+.++|++ +|+ .+|+.|++|..|.+++++ |
T Consensus 458 -------~~--------~----~~~~~~l~~-----------------------~~~-~~l~~~~~P~~i~~~~~~--P- 491 (511)
T PRK13391 458 -------DP--------G----PALAAELIA-----------------------FCR-QRLSRQKCPRSIDFEDEL--P- 491 (511)
T ss_pred -------Cc--------c----cchHHHHHH-----------------------HHH-hhcccCcCCcEEEEeecC--C-
Confidence 00 0 112345666 776 689999999999999999 8
Q ss_pred CCccccccccChHHHHHHHHH
Q 004568 717 AGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 717 ~~~~t~~GKi~R~~l~~~~~~ 737 (744)
+|++||++|+.|++.|..
T Consensus 492 ---~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 492 ---RLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred ---CCCccceeHHHHHHHhhc
Confidence 999999999999998864
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=549.62 Aligned_cols=516 Identities=23% Similarity=0.313 Sum_probs=396.3
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAA 159 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~ 159 (744)
..++.++|+++++++|+++|++. +++ .+||+||.++++++|..|.+ .|+++|++|+
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~ 78 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVA 78 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 46899999999999999999985 343 69999999999999999984 8999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCc
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK 239 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 239 (744)
++++|++++++++|||+++|++++|++|.++.+++.++++.++++.+++++...+.+..+.... ..+.++.........
T Consensus 79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (560)
T PRK08974 79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS 157 (560)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence 9999999999999999999999999999999999999999999999999877655554443222 223333221110000
Q ss_pred --CCC--------ccCC-C--CCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHH
Q 004568 240 --DSG--------VSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306 (744)
Q Consensus 240 --~~~--------~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 306 (744)
... .... + ......++.+....+...........++++++|+|||||||.||+|+++|+++..++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~ 237 (560)
T PRK08974 158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ 237 (560)
T ss_pred ccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence 000 0000 0 00011222333322221111123356789999999999999999999999999887765
Q ss_pred HHhhCC--CCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC-CcccccccchhhccCccccceEecceEEeechHH
Q 004568 307 IKTLIP--NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382 (744)
Q Consensus 307 ~~~~~~--~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~ 382 (744)
....+. ....++.++..+|++|.+++.. .+.++..|+++++. ++... ..++..++++++|++.++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~ 309 (560)
T PRK08974 238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDI--------PGFVKELKKYPFTAITGVNTL 309 (560)
T ss_pred HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCH--------HHHHHHHHhcCcceEcCcHHH
Confidence 443331 2345678889999999998755 45567888887663 22111 112333899999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHH
Q 004568 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462 (744)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~ 462 (744)
+..+.+.... .....+++|.+++||+++++.+.
T Consensus 310 ~~~l~~~~~~-----------------------------------------------~~~~~~~lr~~~~gg~~~~~~~~ 342 (560)
T PRK08974 310 FNALLNNEEF-----------------------------------------------QELDFSSLKLSVGGGMAVQQAVA 342 (560)
T ss_pred HHHHHhCcCc-----------------------------------------------ccCCccceeEEEecCccCCHHHH
Confidence 9988652100 00112489999999999999999
Q ss_pred HHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccc
Q 004568 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541 (744)
Q Consensus 463 ~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY 541 (744)
+.+++.+|+++++.||+||++..++.+.... ...+++|.|+|+++++|+| +++.. ++.|+.|||+++|+.++.||
T Consensus 343 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy 418 (560)
T PRK08974 343 ERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNE---VPPGEPGELWVKGPQVMLGY 418 (560)
T ss_pred HHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCC---CCCCCceEEEEecCCcchhh
Confidence 9999988999999999999988776554332 2357899999999999998 55554 56889999999999999999
Q ss_pred cCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCCC
Q 004568 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN 621 (744)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~ 621 (744)
+++++.+.+.| .+ |||+|||+++++++|+++++||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++..
T Consensus 419 ~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~ 492 (560)
T PRK08974 419 WQRPEATDEVI---KD--GWLATGDIAVMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEV 492 (560)
T ss_pred cCChhhhhhhh---hc--CCcccCCEEEEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCC
Confidence 99999999888 56 89999999999999999999999999998 59999999999999999999999999987653
Q ss_pred ---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCC
Q 004568 622 ---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLD 698 (744)
Q Consensus 622 ---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 698 (744)
.++++|+..... .. . +++++ +++ ..|+
T Consensus 493 ~g~~~~~~v~~~~~~-----------~~-----------~----~~l~~-----------------------~l~-~~l~ 522 (560)
T PRK08974 493 SGEAVKIFVVKKDPS-----------LT-----------E----EELIT-----------------------HCR-RHLT 522 (560)
T ss_pred cceEEEEEEECCCCC-----------CC-----------H----HHHHH-----------------------HHH-hhcc
Confidence 366666544211 00 1 23444 555 5899
Q ss_pred CccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 004568 699 KFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQM 741 (744)
Q Consensus 699 ~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~ 741 (744)
.|++|..+++++++ | +|++||++|++|++...++.++
T Consensus 523 ~~~~P~~~~~~~~l--P----~t~~GK~~r~~l~~~~~~~~~~ 559 (560)
T PRK08974 523 GYKVPKLVEFRDEL--P----KSNVGKILRRELRDEARAKVDN 559 (560)
T ss_pred cccCCcEEEEhhhC--C----CCCCCcEeHHHHHHHHHhhhcc
Confidence 99999999999999 8 9999999999999998887653
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-61 Score=544.43 Aligned_cols=507 Identities=20% Similarity=0.236 Sum_probs=397.1
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
-||.++|+++++++||++|+++ +++ .+||+||.++++++|+.|.+.|+++||+|+++
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~ 59 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIY 59 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3799999999999999999986 333 79999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|+++|++++|||+++|++++|+++.++.+++.++++++++++++++......+.++....+..+.++.++......
T Consensus 60 ~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (533)
T PRK07798 60 ARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND-- 137 (533)
T ss_pred cCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc--
Confidence 999999999999999999999999999999999999999999999999888777777666666777777766432111
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC--------CC
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--------PN 313 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------~~ 313 (744)
......+++++........ ......+|.++|+|||||||.||+|+++|+++...+......+ ..
T Consensus 138 ------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (533)
T PRK07798 138 ------LLPGAVDYEDALAAGSPER--DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEE 209 (533)
T ss_pred ------cCCccccHHHHHhccCCcC--CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhh
Confidence 0012446677655432211 1112234457999999999999999999999987655432211 01
Q ss_pred C------CCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHH-H
Q 004568 314 P------GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-V 386 (744)
Q Consensus 314 ~------~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~-l 386 (744)
+ ..+++++..+|++|..+++..+.++..|+++++.+... .+ +..++..++++++|.+.++|..+.. +
T Consensus 210 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~-~~-----~~~~~~~i~~~~~t~~~~~~~~~~~~l 283 (533)
T PRK07798 210 LAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVR-FD-----ADEVWRTIEREKVNVITIVGDAMARPL 283 (533)
T ss_pred hcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCC-cC-----HHHHHHHHHHhCCeEEEechHHHHHHH
Confidence 1 56789999999999999998888999999999955221 11 2234444999999999999877644 3
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHH
Q 004568 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (744)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 466 (744)
.+... +......+++|.+++||+++++++.+++.
T Consensus 284 ~~~~~----------------------------------------------~~~~~~~~~l~~i~~gG~~~~~~~~~~~~ 317 (533)
T PRK07798 284 LDALE----------------------------------------------ARGPYDLSSLFAIASGGALFSPSVKEALL 317 (533)
T ss_pred HHHhc----------------------------------------------ccccCCCCceEEEEECCCCCCHHHHHHHH
Confidence 22111 00011235899999999999999999999
Q ss_pred hhc-CCceecccChhhhcccccccCCCCCCCCccC--CCcCccEEEEEecCCCCccCCCCCCCC--cEEEEccccccccc
Q 004568 467 ICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG--PPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGGFNVTAGY 541 (744)
Q Consensus 467 ~~~-g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG--~p~~~~~v~i~d~~~~~~~~~~~~g~~--GEl~v~g~~v~~gY 541 (744)
+.+ ++.+++.||+||++.......... ....| .+.++..++|+| +++.. +++|+. |+|+ +++.++.||
T Consensus 318 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~-~~~~~---~~~g~~~~g~l~-~~~~~~~gy 390 (533)
T PRK07798 318 ELLPNVVLTDSIGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLD-EDGNP---VEPGSGEIGWIA-RRGHIPLGY 390 (533)
T ss_pred HHcCCCeEEeeecccccccccccCCCCC--CccCCCCccCCCceEEEEC-CCCCC---CCCCCCCeeEEE-eecCccccc
Confidence 877 789999999999976554332211 12334 788999999998 55654 456666 6665 556799999
Q ss_pred cCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC-
Q 004568 542 FNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH- 620 (744)
Q Consensus 542 ~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~- 620 (744)
|++++.|++.|.. .++.+||+|||+|++|+||+++++||.||+||. +|++|+|.+||++|.++|.|.+++|++.++.
T Consensus 391 ~~~~~~t~~~f~~-~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~ 468 (533)
T PRK07798 391 YKDPEKTAETFPT-IDGVRYAIPGDRARVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDER 468 (533)
T ss_pred cCChhhhHHhhcc-CCCCceEEcCcEEEEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcc
Confidence 9999999999853 234479999999999999999999999999996 6999999999999999999999999998754
Q ss_pred --CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCC
Q 004568 621 --NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLD 698 (744)
Q Consensus 621 --~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 698 (744)
+.++++|++.++. ..+ . ++|.+ +++ .+|+
T Consensus 469 ~~~~~~~~v~~~~~~----------~~~-----------~----~~l~~-----------------------~l~-~~l~ 499 (533)
T PRK07798 469 WGQEVVAVVQLREGA----------RPD-----------L----AELRA-----------------------HCR-SSLA 499 (533)
T ss_pred cCceEEEEEEECCCC----------CCC-----------H----HHHHH-----------------------HHh-hhcc
Confidence 3588888876531 000 1 34555 555 5799
Q ss_pred CccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 699 KFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 699 ~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
.|++|..+++++++ | +|++||++|+.|+++.++
T Consensus 500 ~~~~P~~i~~~~~i--P----~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 500 GYKVPRAIWFVDEV--Q----RSPAGKADYRWAKEQAAE 532 (533)
T ss_pred cCCCCeEEEEcccC--C----CCCcchhhHHHHhhhhcc
Confidence 99999999999999 8 999999999999998764
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=544.83 Aligned_cols=505 Identities=22% Similarity=0.234 Sum_probs=386.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.++.+.|++.++.+|+++|+.+ ++. .+||+||.++++++|..|.+.|+++||+|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~ 74 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL 74 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 6888999999999999999975 332 69999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 241 (744)
++|++++++++|||+++|++++|+++.++.+++.+++++++++.++++.+..+.+.+.....+..+. +.++......
T Consensus 75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 151 (545)
T PRK08162 75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY-- 151 (545)
T ss_pred CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc--
Confidence 9999999999999999999999999999999999999999999999999887766655444433222 2222111000
Q ss_pred CccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEE
Q 004568 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321 (744)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l 321 (744)
. ........+++++..............+.+++++|+|||||||.||||+++|+++..........+ .+..+++++
T Consensus 152 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l 227 (545)
T PRK08162 152 --P-GGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYL 227 (545)
T ss_pred --c-cCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeE
Confidence 0 001123345666554322111111223456889999999999999999999999877766655555 778889999
Q ss_pred ecCChHHHHHHHHHHHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhc
Q 004568 322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398 (744)
Q Consensus 322 ~~~Pl~h~~g~~~~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~ 398 (744)
+.+|++|.+++...+...+.|++.++ +++..+.+. ++++++|++.++|++++.|++.......
T Consensus 228 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~~~~--- 293 (545)
T PRK08162 228 WTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDL-----------IREHGVTHYCGAPIVLSALINAPAEWRA--- 293 (545)
T ss_pred eccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHH-----------HHHcCCeEEEechHHHHHHHhCcccccc---
Confidence 99999999998765544444554444 345555554 9999999999999999998753110000
Q ss_pred chhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccC
Q 004568 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478 (744)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG 478 (744)
...+++.+++||+++++++.+.++. +++++++.||
T Consensus 294 --------------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG 328 (545)
T PRK08162 294 --------------------------------------------GIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYG 328 (545)
T ss_pred --------------------------------------------CCccceEEEECCCCCCHHHHHHHHH-hCCceeeccc
Confidence 0024556689999999999988877 4899999999
Q ss_pred hhhhcccccccCCCC-----------CCCCccCCCcC-ccEEEEEecCCCCccCCCCCC-CCcEEEEccccccccccCCC
Q 004568 479 LTETCAGSTFSEWDD-----------PSVGRVGPPVP-CCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNP 545 (744)
Q Consensus 479 ~TE~~~~~~~~~~~~-----------~~~~~vG~p~~-~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~~v~~gY~~~~ 545 (744)
+||+++.++.+.... ...+++|.+.+ +..++|+|++++..++ ..| +.|||+|+|+.++.||++++
T Consensus 329 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~--~~g~~~Gel~v~g~~~~~gY~~~~ 406 (545)
T PRK08162 329 LTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP--ADGETIGEIMFRGNIVMKGYLKNP 406 (545)
T ss_pred ccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC--CCCCceeEEEEecCcchhhhcCCh
Confidence 999865544332110 11245677665 3468888855555432 123 46999999999999999999
Q ss_pred cccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---Ce
Q 004568 546 GKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NY 622 (744)
Q Consensus 546 ~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~ 622 (744)
+.+.+.| .+ |||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..
T Consensus 407 ~~~~~~~---~~--g~~~TGDl~~~d~dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~ 480 (545)
T PRK08162 407 KATEEAF---AG--GWFHTGDLAVLHPDGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEV 480 (545)
T ss_pred hhhHHHh---hC--CCcccCceEEEcCCccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCce
Confidence 9999998 66 89999999999999999999999999996 6999999999999999999999999998754 35
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccc
Q 004568 623 CVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEI 702 (744)
Q Consensus 623 ~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 702 (744)
++++|++.++. ..+ .++|++ +++ ..|+.|++
T Consensus 481 ~~~~v~~~~~~----------~~~---------------~~~l~~-----------------------~~~-~~l~~~~~ 511 (545)
T PRK08162 481 PCAFVELKDGA----------SAT---------------EEEIIA-----------------------HCR-EHLAGFKV 511 (545)
T ss_pred EEEEEEeCCCC----------CCC---------------HHHHHH-----------------------HHH-HhcccccC
Confidence 88898876532 000 135555 666 58999999
Q ss_pred eeEEEEecCCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 703 PAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 703 P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
|..+++ .++ | +|++||++|+.|++++++.-
T Consensus 512 P~~~~~-~~i--P----~t~~gK~~r~~l~~~~~~l~ 541 (545)
T PRK08162 512 PKAVVF-GEL--P----KTSTGKIQKFVLREQAKSLK 541 (545)
T ss_pred CcEEEe-ccc--C----CCCCcCCcHHHHHHHHhhhh
Confidence 999875 566 7 99999999999999987654
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=543.27 Aligned_cols=458 Identities=17% Similarity=0.161 Sum_probs=335.0
Q ss_pred cCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchh------hhHHHHhhccCCCeeEEEEecCC
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ------LKKLSAVSSSLKTIKNVIYFEND 235 (744)
Q Consensus 162 ~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~ii~~~~~ 235 (744)
++|++|+++++|||+++|++++|+|+.++.+++.++|++++++++|+++.. .+.+..+....+ .+.++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222222111 2233322111
Q ss_pred CCCcCCCccCCCCCceEeeHHHHHHcCCC------CCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHh
Q 004568 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKR------SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309 (744)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 309 (744)
.... ........+|+++...... ....+....++|+++|+|||||||.||||++||++++........
T Consensus 80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~ 153 (499)
T PLN03051 80 EPVA------VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA 153 (499)
T ss_pred cccC------CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence 1000 0000012346665432111 011112235689999999999999999999999998877665555
Q ss_pred hCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCC----cccccccchhhccCccccceEecceEEeechHHHHH
Q 004568 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385 (744)
Q Consensus 310 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~----~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~ 385 (744)
.+ ++.++|++++.+|++|.+++...+.+|..|+++++.. +..+++ .|+++++|++.++|+++..
T Consensus 154 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~-----------~i~~~~vt~~~~vP~~~~~ 221 (499)
T PLN03051 154 HM-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGK-----------FVQDAGVTVLGLVPSIVKA 221 (499)
T ss_pred hc-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHH-----------HHHHhCCcEEEeCHHHHHH
Confidence 66 7889999999999999999876677899999998843 233333 4999999999999999998
Q ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHH
Q 004568 386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465 (744)
Q Consensus 386 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~ 465 (744)
|.+..... ......++||.+++||+++++++.+++
T Consensus 222 l~~~~~~~---------------------------------------------~~~~~~~~Lr~i~~gG~~~~~~~~~~~ 256 (499)
T PLN03051 222 WRHTGAFA---------------------------------------------MEGLDWSKLRVFASTGEASAVDDVLWL 256 (499)
T ss_pred HHhcCccc---------------------------------------------cccCCchhheEEEecCCCCCHHHHHHH
Confidence 86531000 000112489999999999999998877
Q ss_pred Hhhc--CCceecccChhhhcccccccC-CCCCCCCccCCCcCccEEEEEecCCCCccCCCCCC--CCcEEEEccccc--c
Q 004568 466 NICM--GAPIGQAYGLTETCAGSTFSE-WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV--T 538 (744)
Q Consensus 466 ~~~~--g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g--~~GEl~v~g~~v--~ 538 (744)
++.+ ++++++.||+||++..++... ......+++|+|.++++++|+| ++++.+ ++| +.|||+|+||.+ +
T Consensus 257 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~---~~g~~~~Gel~v~g~~~~~~ 332 (499)
T PLN03051 257 SSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPY---PDDQPCVGEVALAPPMLGAS 332 (499)
T ss_pred HHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCC---CCCCCcceEEEEecCcCCCC
Confidence 7633 478999999999875433222 2223457999999999999999 666653 455 589999999976 5
Q ss_pred ccccCCCcccccccccC-----CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhc-CcCcceE
Q 004568 539 AGYFNNPGKTSEVYKVD-----ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS-SDYVDNI 612 (744)
Q Consensus 539 ~gY~~~~~~t~~~f~~~-----~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~-~p~V~~a 612 (744)
.|||+++ .++ .|... ..+.+||+|||+|++|+||+|+|+||+||+||+ +|+||+|.|||++|.+ ||+|.+|
T Consensus 333 ~gy~~~~-~~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~a 409 (499)
T PLN03051 333 DRLLNAD-HDK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAET 409 (499)
T ss_pred ccccCCc-ccc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceE
Confidence 8999765 343 33210 012348999999999999999999999999996 6999999999999986 9999999
Q ss_pred EEEecCCCC----eEEEEE---EcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchh
Q 004568 613 MIHADPFHN----YCVALV---VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKT 685 (744)
Q Consensus 613 ~V~g~~~~~----~~~A~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 685 (744)
+|++.+++. .++|+| +++++.- +. . .+++++.+++
T Consensus 410 avvg~~d~~~g~~~~~a~v~~~v~~~~~~---------~~-------~----~~~l~~~~~~------------------ 451 (499)
T PLN03051 410 AAVGVAPPDGGPELLVIFLVLGEEKKGFD---------QA-------R----PEALQKKFQE------------------ 451 (499)
T ss_pred EEEEecCCCCCceEEEEEEEcceeccccc---------cc-------c----hHHHHHHHHH------------------
Confidence 999988653 488888 6654310 00 0 1334445555
Q ss_pred hhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHH
Q 004568 686 TLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 686 ~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~ 740 (744)
+++ .+|+.|+.|..|++++++ | +|++|||+|++|++.+.+.+.
T Consensus 452 -----~l~-~~l~~~~~~~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~~~~ 494 (499)
T PLN03051 452 -----AIQ-TNLNPLFKVSRVKIVPEL--P----RNASNKLLRRVLRDQLKKELS 494 (499)
T ss_pred -----HHH-hhcCCccCCceEEEcCCC--C----CCCCccHHHHHHHHHHHHhhc
Confidence 544 479887777789999999 8 999999999999998877654
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=552.06 Aligned_cols=504 Identities=21% Similarity=0.271 Sum_probs=379.5
Q ss_pred ccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCC
Q 004568 76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD 155 (744)
Q Consensus 76 ~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~g 155 (744)
..+++..|+.++|+..++++|+..++.. ++ ..++.+||+||+++++++|++|.++|+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~g 74 (579)
T PRK09192 15 RRYADFPTLVEALDYAALGEAGMNFYDR------------RG--------QLEEALPYQTLRARAEAGARRLLALGLKPG 74 (579)
T ss_pred ccccchhhHHHHHHHhhccCCceEEEec------------CC--------CEEEEecHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4456678999999999999887665421 12 123579999999999999999999999999
Q ss_pred CEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCC-------HHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeE
Q 004568 156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKN 228 (744)
Q Consensus 156 d~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 228 (744)
|+|+++++|+++|+++++||+++|++++|+++..+ .+++.++++.++++++|+++...+.+........ .
T Consensus 75 d~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~ 151 (579)
T PRK09192 75 DRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---L 151 (579)
T ss_pred CEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---c
Confidence 99999999999999999999999999999987543 6899999999999999999887666554432211 0
Q ss_pred EEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH
Q 004568 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (744)
Q Consensus 229 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (744)
+ ...++.++...... ........++++++|+|||||||.||||+++|++++..+....
T Consensus 152 ~---------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~ 209 (579)
T PRK09192 152 L---------------------HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209 (579)
T ss_pred c---------------------ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHH
Confidence 1 11122222221111 1112334678999999999999999999999999999888777
Q ss_pred h-hCCCCCCCcEEEecCChHHHHHHHHHH-HHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHH
Q 004568 309 T-LIPNPGRSDVYLAYLPLAHVLELAAES-IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386 (744)
Q Consensus 309 ~-~~~~~~~~d~~l~~~Pl~h~~g~~~~~-~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l 386 (744)
. .+ ++.++|++++++|++|.+++...+ .++..|+++++.....+... +..++..+.++++|+++.+|..+..+
T Consensus 210 ~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~~~~~~l~ 284 (579)
T PRK09192 210 HDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR----PLQWLDLISRNRGTISYSPPFGYELC 284 (579)
T ss_pred hhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC----HHHHHHHHHhcCcEEEeCCcHHHHHH
Confidence 6 66 889999999999999999987654 56888988876332111110 12223339999999877766555544
Q ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHH
Q 004568 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466 (744)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 466 (744)
....... .......+++|.+++||+++++++.+.+.
T Consensus 285 ~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 320 (579)
T PRK09192 285 ARRVNSK--------------------------------------------DLAELDLSCWRVAGIGADMIRPDVLHQFA 320 (579)
T ss_pred HHhhccc--------------------------------------------cccccchhhhheeEecCccCCHHHHHHHH
Confidence 3211000 00011225899999999999999998887
Q ss_pred hhcC------CceecccChhhhcccccccCCCCC----------------------------CCCccCCCcCccEEEEEe
Q 004568 467 ICMG------APIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVPCCYIKLVS 512 (744)
Q Consensus 467 ~~~g------~~i~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~~~~~v~i~d 512 (744)
+.++ ..+++.||+||++..++....... ..+++|+|+|+++++|+|
T Consensus 321 ~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d 400 (579)
T PRK09192 321 EAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN 400 (579)
T ss_pred HHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC
Confidence 7763 348999999999876654432110 125799999999999999
Q ss_pred cCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCee
Q 004568 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (744)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~ 592 (744)
+++.. ++.|+.|||+++|++++.|||++ +.+.+.|. .+ +||+|||+|++ ++|+++|+||.||+||+ +|+
T Consensus 401 -~~~~~---~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~--~d--gw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~ 469 (579)
T PRK09192 401 -EAGMP---LPERVVGHICVRGPSLMSGYFRD-EESQDVLA--AD--GWLDTGDLGYL-LDGYLYITGRAKDLIII-NGR 469 (579)
T ss_pred -CCCCC---CCCCCEEEEEecCCchhhhhcCC-cccccccc--CC--ceeeccceeeE-ECCEEEEEeccccEEEE-CCC
Confidence 55554 56789999999999999999999 66777775 56 89999999999 89999999999999998 699
Q ss_pred eeccHHHHHHHhcCcCcc--eEEEEecCCC--CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhc
Q 004568 593 YISLGKVEAALISSDYVD--NIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKA 668 (744)
Q Consensus 593 ~V~p~eIE~~l~~~p~V~--~a~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 668 (744)
+|+|.|||++|.+||+|. +|+|++.+++ ..++++|++.... ....+.+++.+++
T Consensus 470 ~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~---------------------~~~~~~l~~~~~~- 527 (579)
T PRK09192 470 NIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISD---------------------EERRGQLIHALAA- 527 (579)
T ss_pred ccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCC---------------------hHHHHHHHHHHHH-
Confidence 999999999999999998 8999987755 3577777765421 0112233333433
Q ss_pred cccccchhhhhhccchhhhhHHHHHhcCC-CCccceeEEEEec--CCCCCCCCccccccccChHHHHHHHHHHH
Q 004568 669 STLVSRTEFFLSRRYKTTLCLQVAKAAKL-DKFEIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~~P~~i~~~~--~~~~p~~~~~t~~GKi~R~~l~~~~~~~i 739 (744)
.+ +.|++|..+++++ ++ | +|++||++|++|++.|.+..
T Consensus 528 ---------------------------~l~~~~~~~~~i~~~~~~~l--P----~t~~GKv~R~~l~~~~~~~~ 568 (579)
T PRK09192 528 ---------------------------LVRSEFGVEAAVELVPPHSL--P----RTSSGKLSRAKAKKRYLSGA 568 (579)
T ss_pred ---------------------------HHHHHhCCCceEEEeCCCCc--C----CCCCcchhHHHHHHHHHcCC
Confidence 33 3577888888886 55 7 99999999999999987643
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=546.89 Aligned_cols=513 Identities=20% Similarity=0.272 Sum_probs=367.1
Q ss_pred CHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 004568 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162 (744)
Q Consensus 83 tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~ 162 (744)
++.++|++++..+|+++|+++.+. ++. ..+..+.+||+||..+++++|+.|.+.| ++||+|++++
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~---------~~~-----~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~ 66 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDY---------EQD-----PAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA 66 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEcc---------CCC-----CCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence 688999999999999999986421 110 0122357999999999999999999999 6899999999
Q ss_pred CCcHHHHHHHHHHHhcCcEEEEcCC---CCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCC--CeeEEEEecCCCC
Q 004568 163 ETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK--TIKNVIYFENDGS 237 (744)
Q Consensus 163 ~n~~e~vv~~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~ 237 (744)
+|+++|++++|||+++|++++|+++ ..+.+++.++|++++++++++++...+.+........ ....++.++..
T Consensus 67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (578)
T PRK05850 67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-- 144 (578)
T ss_pred CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence 9999999999999999999999997 4578999999999999999999887766554322111 11112211110
Q ss_pred CcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC----
Q 004568 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN---- 313 (744)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~---- 313 (744)
++ ............++++++|+|||||||.||||++||+++++.+......+..
T Consensus 145 -------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 202 (578)
T PRK05850 145 -------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG 202 (578)
T ss_pred -------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence 00 0000011123467899999999999999999999999999887665443201
Q ss_pred -CCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHH-HHH
Q 004568 314 -PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR-EGV 390 (744)
Q Consensus 314 -~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~-~~~ 390 (744)
...++++++++|++|.+|+.. .+.+++.|+++++.++..+... +..++..+.+++++++ .+|..+..+. ...
T Consensus 203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~ 277 (578)
T PRK05850 203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKT 277 (578)
T ss_pred CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhc
Confidence 356889999999999999865 5677999999988554322111 2223334888999865 5565543332 210
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcC
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g 470 (744)
... .......+++|.+++||+++++++.+.+.+.++
T Consensus 278 ~~~--------------------------------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~ 313 (578)
T PRK05850 278 SDD--------------------------------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFA 313 (578)
T ss_pred chh--------------------------------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHH
Confidence 000 000111247999999999999999988887762
Q ss_pred ------CceecccChhhhcccccccCCCCC-------------------------CCCccCCCcCccEEEEEecCCCCcc
Q 004568 471 ------APIGQAYGLTETCAGSTFSEWDDP-------------------------SVGRVGPPVPCCYIKLVSWDEGGYK 519 (744)
Q Consensus 471 ------~~i~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~vG~p~~~~~v~i~d~~~~~~~ 519 (744)
..+++.||+||++..+........ ...++|.|. +.+++|+|++++..
T Consensus 314 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~- 391 (578)
T PRK05850 314 PFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE- 391 (578)
T ss_pred hcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC-
Confidence 368999999998865544322110 012345554 57999999555544
Q ss_pred CCCCCCCCcEEEEccccccccccCCCcccccccccC---C----CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCee
Q 004568 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD---E----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGE 592 (744)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~---~----~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~ 592 (744)
+++|+.|||+|+|++++.|||++|+.|++.|..+ + ...+||+|||+|+++ ||+|+|+||+||+||+ +|+
T Consensus 392 --~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~ 467 (578)
T PRK05850 392 --CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGR 467 (578)
T ss_pred --CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCe
Confidence 6789999999999999999999999999998521 0 012799999999998 9999999999999997 699
Q ss_pred eeccHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccc
Q 004568 593 YISLGKVEAALISSDYVDNIMIHADPFH--NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKAST 670 (744)
Q Consensus 593 ~V~p~eIE~~l~~~p~V~~a~V~g~~~~--~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 670 (744)
+|+|.|||++|.+||.+. ++|++.++. +.++|+|++++... .+ .+ .....+.+++.+.+
T Consensus 468 ~i~p~eIE~~l~~~~~~~-~~v~~v~~~~~~~~~a~v~~~~~~~----------~~-~~----~~~~~~~l~~~v~~--- 528 (578)
T PRK05850 468 NHYPDDIEATIQEITGGR-VAAISVPDDGTEKLVAIIELKKRGD----------SD-EE----AMDRLRTVKREVTS--- 528 (578)
T ss_pred ecCHHHHHHHHHHhcCCc-EEEEEecCCCceEEEEEEEeccccC----------cc-hh----hhhhHHHHHHHHHH---
Confidence 999999999999999964 778887765 35899998775420 00 00 00112334444443
Q ss_pred cccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEec--CCCCCCCCccccccccChHHHHHHHHH
Q 004568 671 LVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~--~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
.++ . ..+..|..+++++ ++ | +|++|||+|++|++.|++
T Consensus 529 --------------------~l~-~--~~~~~~~~~~~~~~~~i--P----~t~~GKi~R~~l~~~~~~ 568 (578)
T PRK05850 529 --------------------AIS-K--SHGLSVADLVLVAPGSI--P----ITTSGKIRRAACVEQYRQ 568 (578)
T ss_pred --------------------HHH-H--HhCCCceEEEEeCCCCc--C----CCCCchHHHHHHHHHHHc
Confidence 222 0 1123566777775 45 7 999999999999999875
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=534.47 Aligned_cols=477 Identities=22% Similarity=0.277 Sum_probs=382.4
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEE
Q 004568 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC 208 (744)
Q Consensus 129 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 208 (744)
+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhccCC-CeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCC
Q 004568 209 DSKQLKKLSAVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGST 287 (744)
Q Consensus 209 ~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTT 287 (744)
++.....+.......+ .++.++..+... .....+++...... .......++.++++||||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtT 152 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-------------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTT 152 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-------------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCC
Confidence 9887766655544444 445555442211 11234555443221 11223557789999999999
Q ss_pred CcchhhhhchHHHHHHHH------HHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeC---Ccccccccch
Q 004568 288 GLPKGVMITHGNIVATAA------AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSS 358 (744)
Q Consensus 288 G~PKgV~~sh~~l~~~~~------~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~---~~~~~~~~~~ 358 (744)
|.||+|+++|.++..... ...... ....++++++.+|++|.+++...+.++..|+++++. ++..+.+.
T Consensus 153 G~PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 229 (502)
T PRK08276 153 GRPKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALAL-- 229 (502)
T ss_pred CCCceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHH--
Confidence 999999999887654321 111112 235788999999999999988878889999999874 34444444
Q ss_pred hhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHH
Q 004568 359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKS 438 (744)
Q Consensus 359 ~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (744)
++++++|++.++|+++..+.+......
T Consensus 230 ---------i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------- 256 (502)
T PRK08276 230 ---------IERYRVTHSQLVPTMFVRMLKLPEEVR-------------------------------------------- 256 (502)
T ss_pred ---------HHHhCCeEEEehHHHHHHHHhCccccC--------------------------------------------
Confidence 999999999999999988865311000
Q ss_pred HHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCC
Q 004568 439 VRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGG 517 (744)
Q Consensus 439 ~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~ 517 (744)
...+.+++|.+++||++++.++.+++.+.+|..+++.||+||++.++...... ....+++|+|+ +++++|+| +++.
T Consensus 257 -~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~ 333 (502)
T PRK08276 257 -ARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN 333 (502)
T ss_pred -CCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC
Confidence 00112589999999999999999999998899999999999998866554332 23457899999 88999998 5555
Q ss_pred ccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccH
Q 004568 518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (744)
Q Consensus 518 ~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~ 597 (744)
. ++.|+.|||+++|+.++.||+++++.+.+.|. .+ +||+|||+|+++++|.+++.||.||+||+ +|++|+|.
T Consensus 334 ~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~--~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~ 405 (502)
T PRK08276 334 E---LPPGEIGTVYFEMDGYPFEYHNDPEKTAAARN--PH--GWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQ 405 (502)
T ss_pred C---CcCCCceEEEEECCCccchhcCCHHHHHHHhc--CC--CceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHH
Confidence 4 56889999999999999999999999999986 55 89999999999999999999999999997 69999999
Q ss_pred HHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccc
Q 004568 598 KVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674 (744)
Q Consensus 598 eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 674 (744)
+||.+|.+||+|.+|+|++.+++. .++|+|++.+.. . .+.+.. +.+.+
T Consensus 406 ~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~--------~~~~~~----~~i~~------- 456 (502)
T PRK08276 406 EIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA----------D--------AGDALA----AELIA------- 456 (502)
T ss_pred HHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC----------C--------CChhhH----HHHHH-------
Confidence 999999999999999999987653 699999987532 0 011222 34444
Q ss_pred hhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 004568 675 TEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQM 741 (744)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~i~~ 741 (744)
+++ .+|+.|++|..+++++++ | +|++||++|++|++.|.+..++
T Consensus 457 ----------------~~~-~~l~~~~~p~~i~~~~~l--P----~t~~GKi~r~~L~~~~~~~~~~ 500 (502)
T PRK08276 457 ----------------WLR-GRLAHYKCPRSIDFEDEL--P----RTPTGKLYKRRLRDRYWEGRQR 500 (502)
T ss_pred ----------------HHH-hhccCCCCCcEEEEecCC--C----CCcccchhHHHHHHHHHhhhhh
Confidence 555 589999999999999999 8 9999999999999999877654
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-61 Score=517.35 Aligned_cols=506 Identities=19% Similarity=0.239 Sum_probs=399.6
Q ss_pred HHHHHHHHHh-CCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 004568 85 AALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163 (744)
Q Consensus 85 ~~~~~~~a~~-~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 163 (744)
...+.+..+. .++.++++++. ++. ++...+||.|+.+++.++|..|.+.|+++||+|++++|
T Consensus 67 ~n~~~~~~~~~~~~~~a~~~~~----------~~~-------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mP 129 (626)
T KOG1175|consen 67 YNCLDRHIKEKGGDKVAIIFEG----------NEG-------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMP 129 (626)
T ss_pred HhhhhhhhhhcCCCCcEEEEEe----------cCC-------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEecc
Confidence 4445555444 48999999863 221 22234899999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhh---------HHHHhhccCCCe----eEEE
Q 004568 164 TCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK---------KLSAVSSSLKTI----KNVI 230 (744)
Q Consensus 164 n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~----~~ii 230 (744)
+.+|+++++|||.++|++..++...+++.++...+++++++++|+.+.... .+.+.....+.. ...+
T Consensus 130 m~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~ 209 (626)
T KOG1175|consen 130 MIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDL 209 (626)
T ss_pred CChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceee
Confidence 999999999999999999999999999999999999999999999875432 112222111111 1111
Q ss_pred EecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHH-HHHHHh
Q 004568 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKT 309 (744)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~ 309 (744)
.+... .....|+++........ ++...+.+|+.+|+|||||||.||++.+++....-. +.....
T Consensus 210 ~~~~~--------------~~d~~~~~~~~~a~~~~-~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~ 274 (626)
T KOG1175|consen 210 IVSRR--------------NRDLFWSLELKKASPEH-PCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRY 274 (626)
T ss_pred EEecc--------------cccccHHHHhhhcCCCC-CceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcce
Confidence 11110 11334555544333222 256778899999999999999999999988865544 444455
Q ss_pred hCCCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEe-----CCcccccccchhhccCccccceEecceEEeechHHH
Q 004568 310 LIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY-----GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF 383 (744)
Q Consensus 310 ~~~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~-----~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~ 383 (744)
.+ .+.++|++.++..+.|+.+.+.. +.+|+.|+++++ +++..+++. +.++++|+++..|+.+
T Consensus 275 ~~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~-----------v~k~~it~l~t~pt~~ 342 (626)
T KOG1175|consen 275 HF-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKI-----------LDKYKVTVLYTAPTAY 342 (626)
T ss_pred ec-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhh-----------HhhcceEEEEeccHHH
Confidence 56 99999999999999999998775 568999999988 233444444 9999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHH
Q 004568 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR 463 (744)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~ 463 (744)
+.+.+...+.... +. .++||.+.++||++.++..+
T Consensus 343 r~l~~~~~~~~~~---------------------------~~------------------~~sLk~~~S~Gepi~~~~~e 377 (626)
T KOG1175|consen 343 RLLRRLGQEDVTS---------------------------YS------------------LKSLRTCGSVGEPINPEAWE 377 (626)
T ss_pred HHHHHhccccccc---------------------------cc------------------cceEEEEeecCccCCcchHH
Confidence 9886643221111 00 03799999999999999999
Q ss_pred HHHhhcCC-ceecccChhhhcccccccCCCC--CCCCccCCCcCccEEEEEecCCCCccCCCCCC-CCcEEEEccc---c
Q 004568 464 FINICMGA-PIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGF---N 536 (744)
Q Consensus 464 ~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g-~~GEl~v~g~---~ 536 (744)
++.+.++. +|++.||+||+|..+....... ..+++.|.|.+|+.+.|+| ++|..++ +. +.|+|+++.+ +
T Consensus 378 w~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~---~~~~~G~l~~~~~~P~~ 453 (626)
T KOG1175|consen 378 WWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELP---PSTGNGELRLKPPWPPG 453 (626)
T ss_pred HHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcC---CCCceeEEEEeCCCCcc
Confidence 99999987 6999999999999988877766 6789999999999999999 5777654 32 8899999874 7
Q ss_pred ccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEe
Q 004568 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616 (744)
Q Consensus 537 v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g 616 (744)
.+++||+|++....++. ....|+|.|||.+++|+||+++++||.||+|++ +|+++++.|||++|.+||.|.|++|||
T Consensus 454 ~~r~~~~n~erf~~~yf--~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg 530 (626)
T KOG1175|consen 454 MFRTLWGNHERFRAAYF--KKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVG 530 (626)
T ss_pred ccccccCCHHHhhhhhc--ccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeec
Confidence 89999999994444433 323389999999999999999999999999997 599999999999999999999999999
Q ss_pred cCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHH
Q 004568 617 DPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAK 693 (744)
Q Consensus 617 ~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (744)
.+++ +.+.|||++.++. ...+++.++|++ +.+
T Consensus 531 ~p~~~~ge~v~aFvvl~~g~----------------------~~~~~L~kel~~-----------------------~VR 565 (626)
T KOG1175|consen 531 SPDPIKGEVVLAFVVLKSGS----------------------HDPEQLTKELVK-----------------------HVR 565 (626)
T ss_pred CCCCCCCeEEEEEEEEcCCC----------------------CChHHHHHHHHH-----------------------HHH
Confidence 9977 4699999999853 112344455555 444
Q ss_pred hcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 694 AAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 694 ~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
..+.+|..|+.|++++.+ | +|.+||+.|+.|++....+
T Consensus 566 -~~igp~a~P~~I~~v~~L--P----kTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 566 -SVIGPYAVPRLIVFVPGL--P----KTRSGKIMRRALRKIASGK 603 (626)
T ss_pred -hhcCcccccceeEecCCC--C----ccccchhHHHHHHHHhccC
Confidence 599999999999999999 8 9999999999999987543
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=527.86 Aligned_cols=481 Identities=22% Similarity=0.226 Sum_probs=374.4
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEE
Q 004568 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC 208 (744)
Q Consensus 129 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 208 (744)
+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhhccCCCeeEEEEecCCCCCc-CCCccC--CCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCC
Q 004568 209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-DSGVSG--GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285 (744)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSG 285 (744)
+......+..... ....++......... ...+.. ........+++++..... ......++++++++||||
T Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 9877655543321 111122221110000 000000 000112345555543211 112345789999999999
Q ss_pred CCCcchhhhhchHHH---HHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCC---cccccccchh
Q 004568 286 STGLPKGVMITHGNI---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSK 359 (744)
Q Consensus 286 TTG~PKgV~~sh~~l---~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~---~~~~~~~~~~ 359 (744)
|||.||+|+++|.+. ..........+ ++.+++++++.+|++|..+....+.++..|+++++.+ +..+.+
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---- 237 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ---- 237 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH----
Confidence 999999999876654 33333444455 7889999999999999988777777788999988843 333333
Q ss_pred hccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHH
Q 004568 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSV 439 (744)
Q Consensus 360 ~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (744)
.++++++|++.++|+++..+++..... .
T Consensus 238 -------~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------~ 265 (509)
T PRK12406 238 -------LIERHRITHMHMVPTMFIRLLKLPEEV---------------------------------------------R 265 (509)
T ss_pred -------HHHHcCCeEEEccHHHHHHHHhCchhh---------------------------------------------c
Confidence 399999999999999999886421100 0
Q ss_pred HHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCC-CCCCCccCCCcCccEEEEEecCCCCc
Q 004568 440 RAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGY 518 (744)
Q Consensus 440 ~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~~~~~ 518 (744)
+....+++|.+++||+++++++.+++.+.+++.+++.||+||++.+++..... ...++++|+|+++++++|+| +++..
T Consensus 266 ~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~ 344 (509)
T PRK12406 266 AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP 344 (509)
T ss_pred ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC
Confidence 01122589999999999999999999998899999999999999866544322 23457999999999999999 55554
Q ss_pred cCCCCCCCCcEEEEccccccc-cccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccH
Q 004568 519 KTSDKPMPRGEIVVGGFNVTA-GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLG 597 (744)
Q Consensus 519 ~~~~~~g~~GEl~v~g~~v~~-gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~ 597 (744)
++.|+.|||+++|++++. ||+++++.+...+ .+ +||+|||+|++|+||++++.||.||+||+ +|++|+|.
T Consensus 345 ---~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~---~~--~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~ 415 (509)
T PRK12406 345 ---LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID---RG--GFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPA 415 (509)
T ss_pred ---CCCCCceEEEEECCccccccccCCchhccccc---CC--CCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHH
Confidence 568899999999998875 9999999888766 56 89999999999999999999999999996 69999999
Q ss_pred HHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccc
Q 004568 598 KVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674 (744)
Q Consensus 598 eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 674 (744)
+||++|.+||+|.+|+|++.++.. .++++|++.+.. ..+ . ++|++
T Consensus 416 ~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~-----------~----~~l~~------- 463 (509)
T PRK12406 416 EIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA----------TLD-----------E----ADIRA------- 463 (509)
T ss_pred HHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCC----------CCC-----------H----HHHHH-------
Confidence 999999999999999999987653 488888876431 000 1 34444
Q ss_pred hhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHHH
Q 004568 675 TEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~~ 738 (744)
+++ ..|++|++|..+++++++ | +|++||++|++|++.|.+.
T Consensus 464 ----------------~l~-~~l~~~~~P~~i~~~~~i--P----~t~~GK~~r~~L~~~~~~~ 504 (509)
T PRK12406 464 ----------------QLK-ARLAGYKVPKHIEIMAEL--P----REDSGKIFKRRLRDPYWAN 504 (509)
T ss_pred ----------------HHH-HhcccCCCCcEEEEeccC--C----CCCccchhHHHHHHHHHhh
Confidence 444 589999999999999999 8 9999999999999988654
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=526.08 Aligned_cols=494 Identities=21% Similarity=0.296 Sum_probs=368.5
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+.++.+.+...|+.+|+.+++... ++. +.+||.||+++++++|++|.+.|+++||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l 59 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP-----------DAP----------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAV 59 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC-----------CCc----------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 357889899999999999988653 332 57999999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHH-------HHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEec
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL-------IHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (744)
+++|+++|+++++||+++|++++|+++..+.+++ .++++.++++.+++++.....+......
T Consensus 60 ~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------- 128 (545)
T PRK07768 60 LAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK----------- 128 (545)
T ss_pred ECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc-----------
Confidence 9999999999999999999999999998886544 4567778999999987654433221100
Q ss_pred CCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 313 (744)
.....+++++..... .......++++++|+|||||||.||||+++|+++...+......+ +
T Consensus 129 ---------------~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~ 189 (545)
T PRK07768 129 ---------------GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-E 189 (545)
T ss_pred ---------------CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-C
Confidence 122344555543221 122345679999999999999999999999999999888877777 7
Q ss_pred CCCC-cEEEecCChHHHHHHHHH-HHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 314 PGRS-DVYLAYLPLAHVLELAAE-SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 314 ~~~~-d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
+..+ |++++.+|++|.+++... +.++..|+++++..+..+... +..+...++++++|++..+|.++..+.+...
T Consensus 190 ~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 265 (545)
T PRK07768 190 FDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLR 265 (545)
T ss_pred CCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHh
Confidence 7776 899999999999998765 456899999887544322111 1122233999999999888887766654321
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhh---
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC--- 468 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~--- 468 (744)
..... ...+++++|.+++||+++++++.+.+.+.
T Consensus 266 ~~~~~-------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~ 302 (545)
T PRK07768 266 RQAKP-------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGAR 302 (545)
T ss_pred ccccc-------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHh
Confidence 10000 00122589999999999999998888764
Q ss_pred cCC---ceecccChhhhcccccccCCC--------------------------CCCCCccCCCcCccEEEEEecCCCCcc
Q 004568 469 MGA---PIGQAYGLTETCAGSTFSEWD--------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYK 519 (744)
Q Consensus 469 ~g~---~i~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~vG~p~~~~~v~i~d~~~~~~~ 519 (744)
+|. .+++.||+||++..++..... ....+++|+|+++++++|+| ++++.
T Consensus 303 ~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~- 380 (545)
T PRK07768 303 FGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV- 380 (545)
T ss_pred cCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCC-
Confidence 455 499999999998765443321 11346899999999999999 66655
Q ss_pred CCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHH
Q 004568 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKV 599 (744)
Q Consensus 520 ~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eI 599 (744)
+++|+.|||+++|+.++.||++++......+ .+ |||+|||+|++|++|+++++||.||+||+ +|++|+|.||
T Consensus 381 --~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~--g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~ei 452 (545)
T PRK07768 381 --LPPRGVGVIELRGESVTPGYLTMDGFIPAQD---AD--GWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDI 452 (545)
T ss_pred --CCCCCEEEEEEccCcccccccCCCCCccccc---CC--CeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHH
Confidence 5688999999999999999998654443322 44 89999999999999999999999999998 6999999999
Q ss_pred HHHHhcCcCcceEEEEecC--CC--C-eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccc
Q 004568 600 EAALISSDYVDNIMIHADP--FH--N-YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674 (744)
Q Consensus 600 E~~l~~~p~V~~a~V~g~~--~~--~-~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 674 (744)
|++|.+||+|.+++|++.+ +. . .++.+|.+.... +......+.+.+++
T Consensus 453 E~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~~l~~~~~~------- 505 (545)
T PRK07768 453 ERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--------------------DPAEVRRIRHQVAH------- 505 (545)
T ss_pred HHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--------------------cHHHHHHHHHHHHH-------
Confidence 9999999999998877643 22 1 233333333211 01111222333333
Q ss_pred hhhhhhccchhhhhHHHHHhcCCCC-c-cceeEEEEec--CCCCCCCCccccccccChHHHHHHHH
Q 004568 675 TEFFLSRRYKTTLCLQVAKAAKLDK-F-EIPAKIKLMP--EPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~P~~i~~~~--~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
.+.. + .+|..+.+++ .+ | +|++||++|+.++++|.
T Consensus 506 ---------------------~l~~~~~~~p~~v~~v~~~~l--P----~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 506 ---------------------EVVAEVGVRPRNVVVLGPGSI--P----KTPSGKLRRANAAELVT 544 (545)
T ss_pred ---------------------HHHHHhCCCccEEEEeCCCcC--C----CCCchhHHHHHHHHhcC
Confidence 2211 1 5788888887 56 7 99999999999998874
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=509.94 Aligned_cols=432 Identities=25% Similarity=0.354 Sum_probs=353.9
Q ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECch
Q 004568 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211 (744)
Q Consensus 132 Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 211 (744)
||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcch
Q 004568 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPK 291 (744)
Q Consensus 212 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PK 291 (744)
..... + ....+.++................+++++++|||||||.||
T Consensus 81 ~~~~~-------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK 127 (436)
T TIGR01923 81 LEEKD-------------F--------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK 127 (436)
T ss_pred ccccc-------------e--------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence 32110 0 00011111111111111123345688999999999999999
Q ss_pred hhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEe
Q 004568 292 GVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL 371 (744)
Q Consensus 292 gV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 371 (744)
+|+++|+++...+......+ ++.++|++++.+|++|..++...+.++..|+++++.++.. .++..++++
T Consensus 128 ~v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~----------~~~~~l~~~ 196 (436)
T TIGR01923 128 AVPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN----------QLLEMIANE 196 (436)
T ss_pred EEEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH----------HHHHHHHHh
Confidence 99999999999998888888 8999999999999999999887788899999998855431 123339999
Q ss_pred cceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEE
Q 004568 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451 (744)
Q Consensus 372 ~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~ 451 (744)
++|++.++|+++..+.+.... .+++|.++
T Consensus 197 ~~t~~~~~P~~l~~l~~~~~~---------------------------------------------------~~~l~~~~ 225 (436)
T TIGR01923 197 RVTHISLVPTQLNRLLDEGGH---------------------------------------------------NENLRKIL 225 (436)
T ss_pred CCeEEEeHHHHHHHHHhCcCC---------------------------------------------------CCceEEEE
Confidence 999999999999888652100 03799999
Q ss_pred EecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCC-CCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEE
Q 004568 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI 530 (744)
Q Consensus 452 ~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl 530 (744)
+||+++++++.++++. .|+++++.||+||++..++...... ....++|.|++++++++.+.+. ++.|||
T Consensus 226 ~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~---------~~~Gel 295 (436)
T TIGR01923 226 LGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK---------EGHGEI 295 (436)
T ss_pred ECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC---------CCceEE
Confidence 9999999999988876 5999999999999987665443322 2223599999999999954121 267999
Q ss_pred EEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcc
Q 004568 531 VVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610 (744)
Q Consensus 531 ~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~ 610 (744)
+++|+.++.||+++++.+...+ .+ |||+|||+|++++||++++.||.+|+||+ +|++|+|.+||++|.++|.|.
T Consensus 296 ~v~~~~~~~gy~~~~~~~~~~~---~~--~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~ 369 (436)
T TIGR01923 296 MVKGANLMKGYLYQGELTPAFE---QQ--GWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQ 369 (436)
T ss_pred EEECCccchhhCCChhhhhhhh---cC--CCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCee
Confidence 9999999999999888887665 55 89999999999999999999999999997 699999999999999999999
Q ss_pred eEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhh
Q 004568 611 NIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTL 687 (744)
Q Consensus 611 ~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 687 (744)
+++|++.++. ..++++|++.++. + . +.+.+
T Consensus 370 ~~~v~~~~~~~~~~~~~~~v~~~~~~------------~-----------~----~~l~~-------------------- 402 (436)
T TIGR01923 370 EAVVVPKPDAEWGQVPVAYIVSESDI------------S-----------Q----AKLIA-------------------- 402 (436)
T ss_pred EEEEeCCcchhcCCeeEEEEEECCCC------------C-----------H----HHHHH--------------------
Confidence 9999998764 3478888876421 0 1 33444
Q ss_pred hHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHH
Q 004568 688 CLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 731 (744)
Q Consensus 688 ~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l 731 (744)
+++ ..|+.|++|..+++++++ | +|++||++|++|
T Consensus 403 ---~l~-~~l~~~~~p~~i~~~~~i--P----~t~~GK~~r~~L 436 (436)
T TIGR01923 403 ---YLT-EKLAKYKVPIAFEKLDEL--P----YNASGKILRNQL 436 (436)
T ss_pred ---HHH-HhhhCCCCCeEEEEecCC--C----CCCCCceecccC
Confidence 555 589999999999999999 8 999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-58 Score=471.86 Aligned_cols=503 Identities=22% Similarity=0.243 Sum_probs=392.7
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA 159 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~ 159 (744)
...|++++|..+|+++|+++|+++.+ +.+.+||+|++++++++|+.|+..|++.||.|+
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~---------------------~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VA 133 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEG---------------------PFQSLTFAELDARSNRVANYLHAEGLKAGDVVA 133 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeC---------------------CCceeeHHHHHHHHHHHHHHHHHhhcccCCEEE
Confidence 34799999999999999999999852 124799999999999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCee-EEEEecCCCCC
Q 004568 160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIK-NVIYFENDGSE 238 (744)
Q Consensus 160 i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~~~ 238 (744)
++|+|++|++.++|+++++|++...||+++..+.|.|.++.++++.+|++++..+.+.++.+.+.... ++...+....
T Consensus 134 L~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~- 212 (649)
T KOG1179|consen 134 LLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV- 212 (649)
T ss_pred EecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC-
Confidence 99999999999999999999999999999999999999999999999999999988887744332221 1222221110
Q ss_pred cCCCccCCCCCceEeeHHHHHHcCCCCCCC---CCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCC
Q 004568 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315 (744)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 315 (744)
.....++...++.....+.+ ....+-.++++.||||||||.||+.++||..+..........+ +++
T Consensus 213 ----------~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~ 281 (649)
T KOG1179|consen 213 ----------PDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMT 281 (649)
T ss_pred ----------CchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 11222333333333333322 2444567899999999999999999999999999888788888 999
Q ss_pred CCcEEEecCChHHHHHHHHH-HHHHHhcceEEe---CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHH
Q 004568 316 RSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 316 ~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~ 391 (744)
++|+++..+|++|..+.+.. ..++..|+|+++ ++...+++. ..++++|++..+-.+.+.|++...
T Consensus 282 ~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~ 350 (649)
T KOG1179|consen 282 ADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPP 350 (649)
T ss_pred ccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCC
Confidence 99999999999999987765 568999999999 888777777 999999999999999988887533
Q ss_pred HHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
...+. .+++|.++ |.-+-+++++.|.++||.
T Consensus 351 ~~~er-----------------------------------------------~HkVRla~--GNGLR~diW~~Fv~RFg~ 381 (649)
T KOG1179|consen 351 SPEER-----------------------------------------------QHKVRLAY--GNGLRPDIWQQFVKRFGI 381 (649)
T ss_pred Chhhc-----------------------------------------------CceEEEEe--cCCCCchHHHHHHHHcCC
Confidence 22221 13677665 888999999999999987
Q ss_pred c-eecccChhhhcccccccCCCCCCCCccCCCc------CccEEEEEecC-------CCCccCCCCCCCCcEEE--Eccc
Q 004568 472 P-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPV------PCCYIKLVSWD-------EGGYKTSDKPMPRGEIV--VGGF 535 (744)
Q Consensus 472 ~-i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~------~~~~v~i~d~~-------~~~~~~~~~~g~~GEl~--v~g~ 535 (744)
+ |.+.||+||........ +.+.|.+|+-- --+++--+|++ ..+.+.+|++||.|.++ |...
T Consensus 382 ~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k 458 (649)
T KOG1179|consen 382 IKIGEFYGATEGNSNLVNY---DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQK 458 (649)
T ss_pred CeEEEEeccccCcceeeee---cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccC
Confidence 6 99999999987655443 23344444321 11233223433 33455669999999775 2233
Q ss_pred cc---cccccCCCcccccccccC--CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcc
Q 004568 536 NV---TAGYFNNPGKTSEVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610 (744)
Q Consensus 536 ~v---~~gY~~~~~~t~~~f~~~--~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~ 610 (744)
.- |.||.++.++|+++...| ..|+-||.|||+-.+|+.|+|||.+|..|.+.++ ||||+..|||.+|....++.
T Consensus 459 ~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWK-GENVsTtEVe~~l~~~~~~~ 537 (649)
T KOG1179|consen 459 NPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWK-GENVSTTEVEDVLSALDFLQ 537 (649)
T ss_pred CchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeec-CCcccHHHHHHHHhhhcccc
Confidence 33 899999888887765532 3466899999999999999999999999999996 99999999999999999999
Q ss_pred eEEEEecCCCC----eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhh
Q 004568 611 NIMIHADPFHN----YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTT 686 (744)
Q Consensus 611 ~a~V~g~~~~~----~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 686 (744)
||.|+|+.-+. .-.|.|+..++. ....+.+-..++
T Consensus 538 dv~VYGV~VP~~EGRaGMAaI~~~p~~---------------------~~d~~~l~~~l~-------------------- 576 (649)
T KOG1179|consen 538 DVNVYGVTVPGYEGRAGMAAIVLDPTT---------------------EKDLEKLYQHLR-------------------- 576 (649)
T ss_pred ceeEEEEecCCccCccceEEEEecCcc---------------------cchHHHHHHHHH--------------------
Confidence 99999975332 366777755543 111233334444
Q ss_pred hhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHH
Q 004568 687 LCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAK 734 (744)
Q Consensus 687 ~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~ 734 (744)
..||+|.+|..+.+.+++ + +|.+-|.++..|.+.
T Consensus 577 --------~~LP~YA~P~FlRl~~~i--~----~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 577 --------ENLPSYARPRFLRLQDEI--E----KTGTFKLQKTELQKE 610 (649)
T ss_pred --------hhCccccchHHHHHHhhh--h----cccchhhHHHHHHHc
Confidence 489999999999999999 6 899999999998864
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=488.91 Aligned_cols=393 Identities=18% Similarity=0.168 Sum_probs=329.1
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEEC
Q 004568 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (744)
Q Consensus 130 ~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (744)
.+||+||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++++.++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 7999999999999999985 689999999999999999999999999999999999999999999999999999999997
Q ss_pred chhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCc
Q 004568 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL 289 (744)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~ 289 (744)
+.... . . ......++++++++|||||||.
T Consensus 87 ~~~~~---------------~-------------------------~-----------~~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 87 ESDFT---------------K-------------------------L-----------EAVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred Ccccc---------------c-------------------------c-----------cCCCCCCCCceEEEECCCCCCC
Confidence 63100 0 0 0012356789999999999999
Q ss_pred chhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeC---CcccccccchhhccCcc
Q 004568 290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTK 365 (744)
Q Consensus 290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~---~~~~~~~~~~~~~~~~~ 365 (744)
||||++||+++.+.+......+ .+..+|+.+..+|++|.+++.. .+.++..|+++++. ++..+++.
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~--------- 185 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI--------- 185 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH---------
Confidence 9999999999999888887777 7888999999999999999865 56779999999883 34444444
Q ss_pred ccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcC
Q 004568 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG 445 (744)
Q Consensus 366 ~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (744)
++++++|+++++|+++..+.+.... ..
T Consensus 186 --l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~ 212 (414)
T PRK08308 186 --LRNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TF 212 (414)
T ss_pred --HHHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------cc
Confidence 9999999999999999888652100 02
Q ss_pred cEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEecCCCCccCCCCCC
Q 004568 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525 (744)
Q Consensus 446 ~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g 525 (744)
+++.+++||+++++++.+.+++. +.++++.||+||++.+.... .....+++|+|+|++++++.+ + .+
T Consensus 213 ~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p~~~~~~~~~~-~---------~~ 279 (414)
T PRK08308 213 QFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--DMKSHLDLGNPLPHVSVSAGS-D---------EN 279 (414)
T ss_pred cccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC--CCCCCCccCccCCCeEEEEec-C---------CC
Confidence 57889999999999999988876 67899999999998644322 223457899999999999875 2 34
Q ss_pred CCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhc
Q 004568 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (744)
Q Consensus 526 ~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~ 605 (744)
+.|||++++ .+ +||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+
T Consensus 280 ~~gel~v~~---------------------~~--~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 280 APEEIVVKM---------------------GD--KEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLR 335 (414)
T ss_pred CCceEEEEc---------------------CC--ceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHh
Confidence 579999964 23 79999999999999999999999999997 6999999999999999
Q ss_pred CcCcceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhcc
Q 004568 606 SDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRR 682 (744)
Q Consensus 606 ~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 682 (744)
+|+|.+|+|++.++. +.++++++..... + .+++++
T Consensus 336 ~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~------------~---------------~~~l~~--------------- 373 (414)
T PRK08308 336 LPGVQEAVVYRGKDPVAGERVKAKVISHEEI------------D---------------PVQLRE--------------- 373 (414)
T ss_pred CCCeeEEEEEeccCCCCCceEEEEEEeCCCC------------C---------------HHHHHH---------------
Confidence 999999999998765 3578888765321 0 134555
Q ss_pred chhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHH
Q 004568 683 YKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQL 731 (744)
Q Consensus 683 ~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l 731 (744)
+++ .+|+.|++|..+++++++ | +|++||++|+.|
T Consensus 374 --------~l~-~~l~~~~~P~~i~~v~~i--P----~t~~GKi~r~~~ 407 (414)
T PRK08308 374 --------WCI-QHLAPYQVPHEIESVTEI--P----KNANGKVSRKLL 407 (414)
T ss_pred --------HHH-HhCccccCCcEEEEeccC--C----CCCCcCeehhhh
Confidence 666 589999999999999999 8 999999999954
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=492.50 Aligned_cols=406 Identities=32% Similarity=0.509 Sum_probs=316.5
Q ss_pred HHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHH
Q 004568 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE 167 (744)
Q Consensus 88 ~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e 167 (744)
|+++|+++||++|+++ + ++ +++||+||+++++++|..|+++|+++||+|+++++|+++
T Consensus 1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~ 58 (417)
T PF00501_consen 1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE 58 (417)
T ss_dssp HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence 7899999999999985 1 22 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEE----CchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCc
Q 004568 168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243 (744)
Q Consensus 168 ~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 243 (744)
++++++||+++|++++|++|.++.+++.+++++++++++|+ +......+............++.++......
T Consensus 59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 134 (417)
T PF00501_consen 59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPK---- 134 (417)
T ss_dssp HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTT----
T ss_pred eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccc----
Confidence 99999999999999999999999999999999999999997 2222333444444334445566655332111
Q ss_pred cCCCCCceEeeHHHHHHcCCCCCCCCCC-CCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH--hhCCCCCCCcEE
Q 004568 244 SGGISNWTVSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK--TLIPNPGRSDVY 320 (744)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~d~~ 320 (744)
...+.......... .. ..++++++++|||||||.||+|+++|+++++.+..+. ... .++ |++
T Consensus 135 -----------~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~ 199 (417)
T PF00501_consen 135 -----------KEALKSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRI 199 (417)
T ss_dssp -----------CHHHHHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEE
T ss_pred -----------cccccccccccccc-cCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceE
Confidence 00010000000000 00 0579999999999999999999999999999988864 223 334 699
Q ss_pred EecCChHHHHHH-HHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcc
Q 004568 321 LAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG 399 (744)
Q Consensus 321 l~~~Pl~h~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~ 399 (744)
++++|++|.+++ ...+.++..|+++++.+.....+ +..++..++++++|+++++|++++.+.++.... ..
T Consensus 200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~-----~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~--- 270 (417)
T PF00501_consen 200 LSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFD-----PESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK--- 270 (417)
T ss_dssp EESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHH-----HHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---
T ss_pred Eeeccccccccccccccccccccccccccccccccc-----cccchhccccccccccccccccccccccccccc-cc---
Confidence 999999999999 66788899999999965443311 111223399999999999999999997632111 00
Q ss_pred hhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC-ceecccC
Q 004568 400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYG 478 (744)
Q Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~i~~~YG 478 (744)
.....+++||.+++||+++++++.+++++.++. ++++.||
T Consensus 271 ---------------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 311 (417)
T PF00501_consen 271 ---------------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYG 311 (417)
T ss_dssp ---------------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEE
T ss_pred ---------------------------------------ccccccccccccccccccCChhhccccccccccccceeccc
Confidence 000122479999999999999999999999887 9999999
Q ss_pred hhhhcccccccC--CCCCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCC
Q 004568 479 LTETCAGSTFSE--WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE 556 (744)
Q Consensus 479 ~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~ 556 (744)
+||++.+++... ....+.+++|.|+|+++++|+|++++.+ +++|+.|||+|+||+++.||+++|+.|.+.|. .
T Consensus 312 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~---~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~--~ 386 (417)
T PF00501_consen 312 STETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEP---LPPGEPGEIVIRGPNVFSGYYNDPELTAEAFI--D 386 (417)
T ss_dssp EGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSB---ESTTSEEEEEEESTTSBSEETTBHHHHHHHEE--T
T ss_pred ccccceeeeccccccccccccccccccccccccccccccccc---ccccccccccccCCccceeeeccccccccccc--c
Confidence 999999987663 2223568999999999999999655766 46899999999999999999999999999996 4
Q ss_pred CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcC
Q 004568 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589 (744)
Q Consensus 557 ~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~ 589 (744)
+ |||+|||+|++|+||+|+++||.||+||+|
T Consensus 387 ~--~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 387 D--GWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp T--SEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred c--cceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 4 799999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=461.47 Aligned_cols=397 Identities=25% Similarity=0.295 Sum_probs=323.3
Q ss_pred eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECc
Q 004568 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210 (744)
Q Consensus 132 Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 210 (744)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcc
Q 004568 211 KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290 (744)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~P 290 (744)
.....+..... .++..... +..................++++++++|||||||.|
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p 135 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP 135 (408)
T ss_pred chhhhccccCC------ceEEechh-------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence 76554432210 11111100 000000000001111124578999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceE
Q 004568 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370 (744)
Q Consensus 291 KgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~ 370 (744)
|+|.+||+++...+......+ .+.++|++++.+|++|.+++...+.++..|+++++.+...... ...+...+++
T Consensus 136 K~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-----~~~~~~~~~~ 209 (408)
T TIGR01733 136 KGVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD-----AALLAALIAE 209 (408)
T ss_pred CEEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC-----HHHHHHHHHH
Confidence 999999999999999888877 8889999999999999999988889999999998844332211 1122333888
Q ss_pred ecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEE
Q 004568 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM 450 (744)
Q Consensus 371 ~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 450 (744)
+++|.+.++|.+++.+.+... ...++||.+
T Consensus 210 ~~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v 239 (408)
T TIGR01733 210 HPVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLV 239 (408)
T ss_pred cCceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEE
Confidence 999999999999999876421 012589999
Q ss_pred EEecCCCCHHHHHHHHhhcC-CceecccChhhhcccccccCCCCC-----CCCccCCCcCccEEEEEecCCCCccCCCCC
Q 004568 451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524 (744)
Q Consensus 451 ~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 524 (744)
++||+++++++.+.+.+.++ +.+++.||+||++.+++....... +..++|.|+++++++|+|+ ++.. +++
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~---~~~ 315 (408)
T TIGR01733 240 ILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-DLRP---VPV 315 (408)
T ss_pred EEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-CCCC---CCC
Confidence 99999999999999999887 899999999999987753322211 1678999999999999994 4544 568
Q ss_pred CCCcEEEEccccccccccCCCcccccccccCC----CcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHH
Q 004568 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDE----RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVE 600 (744)
Q Consensus 525 g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~----~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE 600 (744)
|+.|||+|+|++++.||+++++.|.+.|..+. +|..||+|||+|++|++|++++.||.||+|++ +|++|+|.+||
T Consensus 316 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie 394 (408)
T TIGR01733 316 GVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIE 394 (408)
T ss_pred CCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHH
Confidence 89999999999999999999999998885321 22239999999999999999999999999997 69999999999
Q ss_pred HHHhcCcCcceEEE
Q 004568 601 AALISSDYVDNIMI 614 (744)
Q Consensus 601 ~~l~~~p~V~~a~V 614 (744)
++|.+||.|.+|+|
T Consensus 395 ~~l~~~~~v~~~~v 408 (408)
T TIGR01733 395 AALLRHPGVREAVV 408 (408)
T ss_pred HHHhcCcchhhhcC
Confidence 99999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=405.38 Aligned_cols=317 Identities=26% Similarity=0.380 Sum_probs=255.8
Q ss_pred CCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeC-
Q 004568 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG- 348 (744)
Q Consensus 270 ~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~- 348 (744)
....++|+++++|||||||.||||+++|+++.+.+......+ ...++++..+|++|.+++...+.++..|+++++.
T Consensus 30 ~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~ 106 (358)
T PRK07824 30 GEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD 106 (358)
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC
Confidence 345578999999999999999999999999998887665543 3557899999999999998778888999988762
Q ss_pred -----CcccccccchhhccCccccceEec--ceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccc
Q 004568 349 -----STLTMTDTSSKIKKGTKGDVSVLK--PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421 (744)
Q Consensus 349 -----~~~~~~~~~~~~~~~~~~~i~~~~--~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (744)
++..+.+. +++++ .++...+|..+..+......
T Consensus 107 ~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~p~~l~~~~~~~~~----------------------------- 146 (358)
T PRK07824 107 VSAGFDPTALPRA-----------VAELGGGRRYTSLVPMQLAKALDDPAA----------------------------- 146 (358)
T ss_pred cCCCcCHHHHHHH-----------HHHhCCCceEEEecHHHHHHHHhCccc-----------------------------
Confidence 23333333 77777 56667788877655431000
Q ss_pred cccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCC
Q 004568 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501 (744)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 501 (744)
....+++|.+++||+++++++.+++.+ +++++++.||+||++..+. ..|.
T Consensus 147 -------------------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~ 196 (358)
T PRK07824 147 -------------------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGV 196 (358)
T ss_pred -------------------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCce
Confidence 001248999999999999999988876 4999999999999876432 3689
Q ss_pred CcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEec
Q 004568 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDR 581 (744)
Q Consensus 502 p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR 581 (744)
|++++++++.+ |||+++|+.++.||+++++.+ .|. .+ |||+|||+|++ ++|+++|+||
T Consensus 197 ~~~g~~v~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~~--~~--g~~~TGDl~~~-~~g~l~i~GR 254 (358)
T PRK07824 197 PLDGVRVRVED---------------GRIALGGPTLAKGYRNPVDPD--PFA--EP--GWFRTDDLGAL-DDGVLTVLGR 254 (358)
T ss_pred eCCCCEEEecC---------------CEEEEecCccccccCCCcccc--ccc--CC--CceecccEEEE-eCCEEEEEec
Confidence 99999999843 899999999999999988754 343 45 79999999999 8999999999
Q ss_pred CCCeEEcCCeeeeccHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHH
Q 004568 582 KKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAV 658 (744)
Q Consensus 582 ~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (744)
.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +.++|+|+...+. .
T Consensus 255 ~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~----------~-------------- 309 (358)
T PRK07824 255 ADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP----------A-------------- 309 (358)
T ss_pred cCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC----------C--------------
Confidence 9999997 6999999999999999999999999998765 3588888765421 0
Q ss_pred HHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHHHH
Q 004568 659 NEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 659 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
...++|++ +++ +.|+.|++|..|++++++ | +|++||++|++|+++|.+
T Consensus 310 -~~~~~i~~-----------------------~~~-~~l~~~~~P~~i~~v~~l--P----~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 310 -PTLEALRA-----------------------HVA-RTLDRTAAPRELHVVDEL--P----RRGIGKVDRRALVRRFAG 357 (358)
T ss_pred -cCHHHHHH-----------------------HHH-hhCccccCCCEEEEecCC--C----CCCCccccHHHHHHHhhc
Confidence 01234555 665 589999999999999998 8 999999999999999865
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=411.81 Aligned_cols=436 Identities=22% Similarity=0.279 Sum_probs=345.5
Q ss_pred ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcE
Q 004568 50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE 129 (744)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~ 129 (744)
+..++++...++ .. ++ ......+...+++++|.+++.+.|++.|+.+ .+ .
T Consensus 202 ~~~l~ll~~~e~-~~---~~---~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~------------~~-----------~ 251 (642)
T COG1020 202 LSALPLLLPSER-EV---WN---ALAAPIPLRLTIHLLFEEQAATTPDAVALVR------------GG-----------Q 251 (642)
T ss_pred cccCCCCCHHHH-hh---cc---ccccCCCccchHHHHHHHHHHhCCCceeEec------------CC-----------C
Confidence 555666666666 11 11 2333445558999999999999999999875 22 2
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEEC
Q 004568 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD 209 (744)
Q Consensus 130 ~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 209 (744)
.+||+|+..+++++|+.|.+.|++++++|+++++++++++++++|++++|+.++|+++.++.+++.+++++++++.+++.
T Consensus 252 ~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~ 331 (642)
T COG1020 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ 331 (642)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEec
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCCCCCceEeeHHHHHH-cCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 004568 210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEK-LGKRSPVDPSLPSQNGVAVIMYTSGSTG 288 (744)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dd~a~i~~TSGTTG 288 (744)
........ ..+. +..+. ... .....+. .....+++.+|++|||||||
T Consensus 332 ~~~~~~~~----~~~~----~~~~~-----------------------~~~~~~~~~~~-~~~~~~~~~ayiiytsgstg 379 (642)
T COG1020 332 AHLRVDDV----GLPG----LALDD-----------------------ALSEIPDTDPI-PQALLGDALAYIIYTSGSTG 379 (642)
T ss_pred cccccccc----cCCc----ccccc-----------------------ccccCCccCcc-cccCCCCCeEEEEEccCCCC
Confidence 43221100 0000 10000 000 0000010 23345689999999999999
Q ss_pred cchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCChHHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccc
Q 004568 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368 (744)
Q Consensus 289 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i 368 (744)
.||||+++|+++.+.+.+....+ .+...|+++...++.++......+.++..|+++++..+....+.. .+...+
T Consensus 380 ~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~-----~l~~~~ 453 (642)
T COG1020 380 QPKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPA-----ALLELL 453 (642)
T ss_pred CCCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHH-----HHHHHH
Confidence 99999999999999888888887 899999999999999999999999999999999996555444431 223338
Q ss_pred eEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEE
Q 004568 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448 (744)
Q Consensus 369 ~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 448 (744)
.++++|++..+|.++..+.......... ...+.+|
T Consensus 454 ~~~~vt~~~~~p~~~~~~~~~~~~~~~~---------------------------------------------~~~~~lr 488 (642)
T COG1020 454 EAQGITVLLLVPLLLRLLLLAALAPDLI---------------------------------------------SPCERLR 488 (642)
T ss_pred HHcCCEEEEecHHHHHHHHhchhhcccc---------------------------------------------CCccccc
Confidence 8999999999999999887531100000 0002489
Q ss_pred EEEEecCCCCHHHHHHHHhhc--CCceecccChhhhcccccccCCCCCC--CCccCCCcCccEEEEEecCCCCccCCCCC
Q 004568 449 FMICGGAPLSADSQRFINICM--GAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524 (744)
Q Consensus 449 ~i~~gG~~l~~~~~~~~~~~~--g~~i~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p~~~~~v~i~d~~~~~~~~~~~~ 524 (744)
.+++||+.++..+...+.... ...+.|.||+||++...+........ ..++|+|++|+.++|+| +.+.. ++.
T Consensus 489 ~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~---~p~ 564 (642)
T COG1020 489 QLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRP---LPL 564 (642)
T ss_pred EEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCc---CCC
Confidence 999999999999988776654 46899999999977766554433332 35899999999999998 44444 678
Q ss_pred CCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHh
Q 004568 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALI 604 (744)
Q Consensus 525 g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~ 604 (744)
|..||+++.|.++..||+++|+.|.+.|. .+ ++|+|||++++..||.+.++||.|+++|++ |++|++.|||..+.
T Consensus 565 gv~gel~i~g~~~a~gy~~~p~lt~~~f~--~~--~~y~tgD~~r~~~dg~~e~lgr~D~qvki~-g~Riel~eie~~l~ 639 (642)
T COG1020 565 GVPGELYIAGLGLALGYLNRPDLTAERFI--AL--RLYRTGDLARPLADGALEYLGRKDSQVKIR-GFRIELGEIEAALA 639 (642)
T ss_pred CCCeeeEECCcchhhhhcCChhhhHHHhh--hc--cCccCCCeeeECCCCeEEEeccccceeEec-eEecCcHHHHHHHh
Confidence 89999999999999999999999999997 43 499999999999999999999999999996 99999999999999
Q ss_pred cCc
Q 004568 605 SSD 607 (744)
Q Consensus 605 ~~p 607 (744)
++|
T Consensus 640 ~~~ 642 (642)
T COG1020 640 EQP 642 (642)
T ss_pred cCC
Confidence 876
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=338.36 Aligned_cols=285 Identities=21% Similarity=0.192 Sum_probs=219.3
Q ss_pred CCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCC--CCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCC--
Q 004568 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-- 349 (744)
Q Consensus 275 dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~-- 349 (744)
+..++++|||||||.||||++||+++++.+..+...+ ++. +.|++++.+|++|.+++.. .+.++..|+++++..
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence 4468999999999999999999999999888777766 554 3468999999999999754 466788999998843
Q ss_pred -cccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhh
Q 004568 350 -TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428 (744)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 428 (744)
+..+++. ++. .|+++++|++++.+.+..
T Consensus 174 ~~~~~l~~-----------i~~--~t~~~~~P~~l~~l~~~~-------------------------------------- 202 (386)
T TIGR02372 174 PASGIMRH-----------ARP--GDLIVGTPFIWEQLADLD-------------------------------------- 202 (386)
T ss_pred ChHHHHHh-----------hcc--CCEEEECcHHHHHHHhhC--------------------------------------
Confidence 3333322 433 289999999999886420
Q ss_pred hhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCC-ceecccChhhhcccccccCCCCCCCCccCCCcCccE
Q 004568 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507 (744)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 507 (744)
...++++. ++||+++++++.+.+++. +. .+++.||+||++++++... ++..|+|+|+++
T Consensus 203 -------------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~ 262 (386)
T TIGR02372 203 -------------YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLA 262 (386)
T ss_pred -------------cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCcc
Confidence 00135775 688999999999998875 64 6999999999987654322 234677888766
Q ss_pred EEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCCCeEEEEecCCCeEE
Q 004568 508 IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587 (744)
Q Consensus 508 v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Ik 587 (744)
+++ +++. + .| .. .|++|||+|++|++|+|+|+||+||+||
T Consensus 263 ~~~---~~~~-----------~---~g---------------------~~--~~~~tgD~g~~d~~G~l~i~GR~dd~Ik 302 (386)
T TIGR02372 263 CFA---DTLS-----------S---AG---------------------LA--RRLDLQDRLAWDKDGGFTILGRKDEILQ 302 (386)
T ss_pred ccC---CCcc-----------C---CC---------------------cc--ceeecCceEEEcCCCcEEEecccCCEEE
Confidence 543 1110 0 01 11 5899999999999999999999999999
Q ss_pred cCCeeeeccHHHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHh
Q 004568 588 LQHGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667 (744)
Q Consensus 588 i~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 667 (744)
+ +|++|+|.+||++|.+||+|.+|+|+.. .+.+.|+|+++++. + .+.+.++|++
T Consensus 303 ~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~--g~~~~a~vv~~~~~--------------------~---~~~~~~~l~~ 356 (386)
T TIGR02372 303 V-GGVNVSPGHVRDILERNPRVRAAAVRLD--GRRLKAFIVVAEDA--------------------D---EAELEIELRA 356 (386)
T ss_pred E-CCEEEcHHHHHHHHHcCCCceEEEEEcC--CceEEEEEEECCCC--------------------C---hHHHHHHHHH
Confidence 7 7999999999999999999999999753 45789999987532 0 0122356666
Q ss_pred ccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccC
Q 004568 668 ASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIK 727 (744)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~ 727 (744)
+++ .+|+.|++|..+.+++++ | +|++||++
T Consensus 357 -----------------------~~~-~~L~~~~~P~~i~~~~~l--P----~t~~GKi~ 386 (386)
T TIGR02372 357 -----------------------TAA-RHLPAPARPDRFRFGTEL--P----RTGAGKLA 386 (386)
T ss_pred -----------------------HHH-HhCCCCCCCcEEEEcccC--C----CCCCCCcC
Confidence 776 689999999999999999 8 99999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=313.24 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=202.4
Q ss_pred CCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHH---HhhCCCCCCCcEEEecCChHHHHH-HHHHHHHHHhcceEEe
Q 004568 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI---KTLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCAIGY 347 (744)
Q Consensus 272 ~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~d~~l~~~Pl~h~~g-~~~~~~~l~~G~~~v~ 347 (744)
.+.+++++++|||||||.||+|.+||+++....... ...+ ++.++|++++..++.+..+ +...+..+..|++++.
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 355688999999999999999999999987654433 2334 7889999988776554333 2233456778888876
Q ss_pred CCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchh
Q 004568 348 GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427 (744)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (744)
.+.... ..++..|++++||+++++|+++..|++........
T Consensus 151 ~~~~~~--------~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~------------------------------- 191 (422)
T TIGR02155 151 ISGGQT--------EKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGID------------------------------- 191 (422)
T ss_pred cCCCCH--------HHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCC-------------------------------
Confidence 432211 11233499999999999999999987643211000
Q ss_pred hhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcc-cccccCCCCCCCCccCCCc--C
Q 004568 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA-GSTFSEWDDPSVGRVGPPV--P 504 (744)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~-~~~~~~~~~~~~~~vG~p~--~ 504 (744)
....++|.+++||+++++++.+.+++.+|+++++.||+||+++ .+...... ...|.++ +
T Consensus 192 --------------~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~ 253 (422)
T TIGR02155 192 --------------PAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIWED 253 (422)
T ss_pred --------------cccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEecC
Confidence 0013799999999999999999999999999999999999853 22211111 1224444 3
Q ss_pred ccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCC-C-----eEEE
Q 004568 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD-G-----CLEI 578 (744)
Q Consensus 505 ~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d-G-----~l~i 578 (744)
++.++|+|++++.. +++|+.|||++++. +++.| +. +||+|||+++++++ | .++|
T Consensus 254 ~~~~eivd~~~g~~---v~~Ge~Gelvvt~~------------~~~~~---p~--~ry~TGDl~~~~~~~Gr~~~~~~~i 313 (422)
T TIGR02155 254 HFYPEIIDPHTGEV---LPDGEEGELVFTTL------------TKEAL---PV--IRYRTRDLTRLLPGTARTMRRMDRI 313 (422)
T ss_pred eeEEEEECCCCCCC---CCCCCeeEEEEecC------------Ccccc---ce--eeEEcCcEEEEECCCCCcccccccc
Confidence 57788999666655 56899999999873 34455 55 89999999999876 4 5789
Q ss_pred EecCCCeEEcCCeeeeccHHHHHHHhcCcCcc-eEEEEecCCC--CeEEEEEEcCH
Q 004568 579 IDRKKDIVKLQHGEYISLGKVEAALISSDYVD-NIMIHADPFH--NYCVALVVPSH 631 (744)
Q Consensus 579 ~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~-~a~V~g~~~~--~~~~A~vv~~~ 631 (744)
.||.||+||+ +|++|+|.+||++|.+||+|. ++.++..... +.+.+.|++.+
T Consensus 314 ~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~ 368 (422)
T TIGR02155 314 TGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKP 368 (422)
T ss_pred cCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEec
Confidence 9999999998 599999999999999999998 4444332211 35666666654
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=294.05 Aligned_cols=511 Identities=17% Similarity=0.168 Sum_probs=321.2
Q ss_pred CCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i 160 (744)
+-++...+.+.+...|.+.+..+-...+. .+....+||++....++.+++.|...|...|+.|++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i 99 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTASE---------------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAI 99 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeecccc---------------cccccchhhhhhhcccchhHHHhhhcccccCceEEE
Confidence 35788899999999999999887432211 133356899999999999999999999999999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCC----HHH---HHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEec
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG----EDA---LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~----~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 233 (744)
++..+.++++..++++++|..+++++|.++ +++ +++.+......++.-. +.+.....+..
T Consensus 100 ~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l----~i~~~~~~~~~--------- 166 (1032)
T KOG1178|consen 100 YMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL----NIIDILLNSLF--------- 166 (1032)
T ss_pred eccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh----hhHHHHhhccc---------
Confidence 999999999999999999999999999999 331 2222211111111100 00000000000
Q ss_pred CCCCCcCCCccCCCCCceEeeH-HHHHHcCCCCCC-CCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC
Q 004568 234 NDGSEKDSGVSGGISNWTVSSF-SEVEKLGKRSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311 (744)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 311 (744)
. ...+... +.+......... ......+|..+++.||||+||.||+|.-+|..+.+...+....+
T Consensus 167 ----------~----~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f 232 (1032)
T KOG1178|consen 167 ----------P----KLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF 232 (1032)
T ss_pred ----------c----ccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC
Confidence 0 0000001 111111111111 11345677899999999999999999999999999999998887
Q ss_pred CCCCCCcEEEecCCh-HHHHHHHHHHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHH
Q 004568 312 PNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV 390 (744)
Q Consensus 312 ~~~~~~d~~l~~~Pl-~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~ 390 (744)
.+..++++-....+ +|+.-.......|..|..+....+..- +. +..+...+++++++..+.+|++.+.++...
T Consensus 233 -~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~-~~----~~~l~~~le~y~i~~~~~~~a~~~~l~~~~ 306 (1032)
T KOG1178|consen 233 -PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIK-DT----PGQLASTLERYGITVSHLLPAMCQLLLAIL 306 (1032)
T ss_pred -CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCc-cc----hhhHHHHHHhhhheeeeechhhhhhhhhhc
Confidence 77777765222222 222222223344666766655222111 00 112233399999999999999998887532
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHh--cCcEEEEEEecCCCCHHHHHHHHhh
Q 004568 391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL--GGRIRFMICGGAPLSADSQRFINIC 468 (744)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lr~i~~gG~~l~~~~~~~~~~~ 468 (744)
..... ... +...+ .+.. -+.|+....+|++....+...+...
T Consensus 307 ~~~~~----------~l~---~~~~~-----------------------~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~ 350 (1032)
T KOG1178|consen 307 TTSLP----------LLE---HAFSL-----------------------SDLLTKRSCLKLVVLGGEPLLVSLYTSTFDL 350 (1032)
T ss_pred Ccchh----------hhh---hhhhc-----------------------ccccccchhheeeeecCCccchhhhhhhhhc
Confidence 11100 000 00000 0000 0378999999999999987633333
Q ss_pred c-CCceecccChhhhcccccccCCCCCCC-------CccCCCcC----ccEEEEEecCCCCccCCCCCCCCcEE----EE
Q 004568 469 M-GAPIGQAYGLTETCAGSTFSEWDDPSV-------GRVGPPVP----CCYIKLVSWDEGGYKTSDKPMPRGEI----VV 532 (744)
Q Consensus 469 ~-g~~i~~~YG~TE~~~~~~~~~~~~~~~-------~~vG~p~~----~~~v~i~d~~~~~~~~~~~~g~~GEl----~v 532 (744)
+ -.-...-|+.|+.....+......... ..+.+-.. .+.+.+.. ..+++ ++.++.+.+ +.
T Consensus 351 ~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~l~~~~~ 426 (1032)
T KOG1178|consen 351 LAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGE---GEGGVGKGCLGAEQN 426 (1032)
T ss_pred ccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcc---cCCcccceeeccccc
Confidence 2 222333489998877766554332210 01111000 11122221 11111 111122222 22
Q ss_pred ccccccccccCCCccccccccc-CCCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcce
Q 004568 533 GGFNVTAGYFNNPGKTSEVYKV-DERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN 611 (744)
Q Consensus 533 ~g~~v~~gY~~~~~~t~~~f~~-~~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~~ 611 (744)
.+..+..| +..++.....+.. +..-++.|+|||+|+.-++|.+.+.||.|++||++ |.++.+.||+.++..||.|.+
T Consensus 427 ~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~r-G~Ri~L~ei~t~v~~~p~v~~ 504 (1032)
T KOG1178|consen 427 LSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDR-GVRIELGELNTVVEVHPDVKE 504 (1032)
T ss_pred ccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEc-cEEEehhhhchhhccCcchhh
Confidence 23334444 2333333333221 11123899999999999999999999999999985 999999999999999999999
Q ss_pred EEEEecCCCC---eEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhh
Q 004568 612 IMIHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLC 688 (744)
Q Consensus 612 a~V~g~~~~~---~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 688 (744)
+.+....+.. .++|||++.... + +.. ...|+.
T Consensus 505 ~itl~~~~~~~~~~l~aFvv~~~~~----------~----------~~~----~~~i~~--------------------- 539 (1032)
T KOG1178|consen 505 AITLARENSTVGQTLLAFVVERGGS----------K----------SVL----IRDIRN--------------------- 539 (1032)
T ss_pred hheeeeeccccCceEEEEEeccCCC----------C----------chh----HHHHHH---------------------
Confidence 9998876553 599999987642 1 111 456777
Q ss_pred HHHHHhcCCCCccceeEEEEecCCCCCCCCccccccccChHHHHHHH
Q 004568 689 LQVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKF 735 (744)
Q Consensus 689 ~~~~~~~~L~~~~~P~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~ 735 (744)
|++ ..|+.|++|..++.++++ | +|++||||+++|.+.+
T Consensus 540 --~l~-~~La~y~vPs~~V~l~~v--P----l~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 540 --YLK-KELASYMLPSLVVPLAKV--P----LNPNGKVDKKALLEYN 577 (1032)
T ss_pred --hhc-ccccceecceEEEEhhhC--C----cCCCCCcChhhhhhhh
Confidence 777 799999999999999999 8 9999999999999933
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=258.27 Aligned_cols=523 Identities=14% Similarity=0.140 Sum_probs=341.9
Q ss_pred CCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEE
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI 160 (744)
Q Consensus 82 ~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~-Gv~~gd~V~i 160 (744)
.++.++++.+++++||.+|+... +++ ......+||++|..+|.+++.+|... -+++||.|++
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L 832 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL 832 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence 68999999999999999999875 443 23345799999999999999999876 6899999999
Q ss_pred EcCCcHHHHHHHHHHHhcCcEEEEcCCCCC------HHHHHHHHHhcCceEEEECchhhhHHHHh--hccC--CCeeEEE
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG------EDALIHSLNETQVTTLICDSKQLKKLSAV--SSSL--KTIKNVI 230 (744)
Q Consensus 161 ~~~n~~e~vv~~lA~~~~G~~~vpl~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~--~~~~~ii 230 (744)
+.+++.|++++++||+.+|.+++|+.|... -..+..+++.+++..|+++......+..- .... .....++
T Consensus 833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~ 912 (1363)
T KOG3628|consen 833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL 912 (1363)
T ss_pred EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence 999999999999999999999999987643 24788999999999999998765444321 1111 1111122
Q ss_pred EecCCCCCcCCCccCCCCCceEeeHHHHHHc--CCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHH
Q 004568 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKL--GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308 (744)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 308 (744)
.+++.. .++..-... ....+.++....++.+|++-|.--++|.--++.+||.++++.++...
T Consensus 913 ~~~~~~----------------~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iK 976 (1363)
T KOG3628|consen 913 VLPKLP----------------ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIK 976 (1363)
T ss_pred cccccc----------------hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHH
Confidence 211110 001110000 11122233445678899999988899999999999999999999999
Q ss_pred hhCCCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHH
Q 004568 309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR 387 (744)
Q Consensus 309 ~~~~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~ 387 (744)
..+ .+.+..-++.+.+.+-..|+.. .+...+.|...++..|..+... +..++..++++++.-++.+-..++.+.
T Consensus 977 e~~-~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn----psLll~~i~~~kvkDt~~~~~tln~c~ 1051 (1363)
T KOG3628|consen 977 ETC-QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN----PSLLLQIISQYKVKDTYPTYSTLNLCQ 1051 (1363)
T ss_pred HHH-ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC----HHHHHHHHhcccccccchhHHHHHHHH
Confidence 988 7777777777777777777654 4667899999988777777666 455556699999998888888887776
Q ss_pred HHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHh
Q 004568 388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467 (744)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 467 (744)
+........... . ....++ ..++..-+.....+.+-+.+
T Consensus 1052 ~~l~t~~enl~~---~-------------------------------------gnn~s~-s~vv~~~~RPr~ali~sf~k 1090 (1363)
T KOG3628|consen 1052 KGLETSVENLSK---R-------------------------------------GNNTSS-SIVVPAEERPRIALIASFKK 1090 (1363)
T ss_pred hccccccchhhh---h-------------------------------------hccccc-ceeeecCCccHHHHHHHHHH
Confidence 643322221100 0 000011 11222222222222222222
Q ss_pred hc---CCc---e-------------ecccChhhhccccc-cc-------------CCCCCCCCccCCCcCccEEEEEecC
Q 004568 468 CM---GAP---I-------------GQAYGLTETCAGST-FS-------------EWDDPSVGRVGPPVPCCYIKLVSWD 514 (744)
Q Consensus 468 ~~---g~~---i-------------~~~YG~TE~~~~~~-~~-------------~~~~~~~~~vG~p~~~~~v~i~d~~ 514 (744)
.+ |.. + .++|...|-+.... .. .+.....-..|...+++++.|++|+
T Consensus 1091 lfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPE 1170 (1363)
T KOG3628|consen 1091 LFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPE 1170 (1363)
T ss_pred HHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCc
Confidence 21 110 1 12222222111000 00 0000011234888899999999987
Q ss_pred CCCccCCCCCCCCcEEEEccccccccccCCCc-cccccccc-----CCCcceeEeeCcEEEEc------CCC----eEEE
Q 004568 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG-KTSEVYKV-----DERGMCWFYTGDIGQVY------PDG----CLEI 578 (744)
Q Consensus 515 ~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~-~t~~~f~~-----~~~g~gw~~TGDlg~~d------~dG----~l~i 578 (744)
+-++ |..|+.||||+.|.+-+.+|++-.+ .....|.. +-++.+|-||||+|++. .+| -||+
T Consensus 1171 tk~p---c~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyV 1247 (1363)
T KOG3628|consen 1171 TKGP---CRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYV 1247 (1363)
T ss_pred cccc---cccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEE
Confidence 7665 7799999999999999888876411 11112211 12256899999999983 233 4899
Q ss_pred EecCCCeEEcCCeeeeccHHHHHHHh-cCcCcceEEEEecCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHH
Q 004568 579 IDRKKDIVKLQHGEYISLGKVEAALI-SSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEA 657 (744)
Q Consensus 579 ~GR~~d~Iki~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (744)
+|-.++.+.+ +|-+.+|.+||..+. .||.|.+|+|+... ..+|.++....+. ++
T Consensus 1248 lG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF~~~--glvVvviE~~gq~----------------------~~ 1302 (1363)
T KOG3628|consen 1248 LGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVFQAT--GLVVVVIECHGQQ----------------------EL 1302 (1363)
T ss_pred eecccceeee-cCcccCcchHHHHHHHhcccccceeeEeeC--CeEEEEEEecCch----------------------hH
Confidence 9999999999 599999999999995 59999999999875 3344555444321 11
Q ss_pred HHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccce-eEEEEecCCCCCCCCccccccccChHHHHHHHH
Q 004568 658 VNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIP-AKIKLMPEPWTPEAGLVTAALKIKREQLKAKFK 736 (744)
Q Consensus 658 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P-~~i~~~~~~~~p~~~~~t~~GKi~R~~l~~~~~ 736 (744)
.+ +...|-. .-|..+.+. .-+.+++.--.| +++.|--+|..+++.|-
T Consensus 1303 ~~-LvPlIv~---------------------------~vL~eH~iI~dvV~fV~~G~~p----~~~~gEK~R~~I~~~w~ 1350 (1363)
T KOG3628|consen 1303 AD-LVPLIVN---------------------------VVLEEHYIILDVVAFVDKGVFP----RNSRGEKQRAHILDSWL 1350 (1363)
T ss_pred hh-hhHHHHH---------------------------HHHhhcceEEEEEEEecCCccc----cCCchhhHHHHHHHHHH
Confidence 11 1111221 234444444 455566652225 99999999999998774
Q ss_pred -HHHHhhh
Q 004568 737 -DDLQMLY 743 (744)
Q Consensus 737 -~~i~~~Y 743 (744)
++++-+|
T Consensus 1351 ~~kL~~~~ 1358 (1363)
T KOG3628|consen 1351 AGKLDPIY 1358 (1363)
T ss_pred hcccceee
Confidence 4555544
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=248.45 Aligned_cols=256 Identities=16% Similarity=0.118 Sum_probs=182.9
Q ss_pred CCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC--CCCCCCcEEEecCChHHHHHHHHH-HHHHHhcceEEeC
Q 004568 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG 348 (744)
Q Consensus 272 ~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~Pl~h~~g~~~~-~~~l~~G~~~v~~ 348 (744)
.+.++++.+.|||||||.||+|.+||.++..........+ .++.++|+++...|+.+..+.... +.++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 3567889999999999999999999999877655443321 278899999999998876665443 4457778877553
Q ss_pred Cc-ccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchh
Q 004568 349 ST-LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427 (744)
Q Consensus 349 ~~-~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (744)
.. ....+ .|+++++|.+.++|+.+..+++...+....
T Consensus 163 ~~~~~~~~-----------~i~~~~~t~l~~~ps~ll~La~~~~~~g~~------------------------------- 200 (445)
T TIGR03335 163 GKCTFPIR-----------IIESYRPTGIVASVFKLLRLARRMKAEGID------------------------------- 200 (445)
T ss_pred CchhHHHH-----------HHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------------------
Confidence 22 22223 389999999999999887776542211000
Q ss_pred hhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCc--Cc
Q 004568 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--PC 505 (744)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~ 505 (744)
....++|.+++||+++++++.+.+++.+|+++++.||+||++.. ..+.. ..|..+ +.
T Consensus 201 --------------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~-~~c~~------~~g~h~~~d~ 259 (445)
T TIGR03335 201 --------------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMC-GECQA------VAGLHVPEDL 259 (445)
T ss_pred --------------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhhe-EEecC------CCCccccCCc
Confidence 00137999999999999999999999899999999999998632 22211 124444 45
Q ss_pred cEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcC-C----C----eE
Q 004568 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP-D----G----CL 576 (744)
Q Consensus 506 ~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~-d----G----~l 576 (744)
+.+.|+|++++.. +++|+.|||++++-.-. .+.+.+ += --|+|||++++.. + | .+
T Consensus 260 ~~vEIvDp~~~~~---vp~Ge~GELvvT~L~~~--------~~r~~~---Pl--iRYrtgD~~~~~~~~~C~CGr~~~r~ 323 (445)
T TIGR03335 260 VHLDVYDPRHQRF---LPDGECGRIVLTTLLKP--------GERCGS---LL--INYDTEDTTVVISRDRCPCGRTHMRI 323 (445)
T ss_pred eEEEEEcCCCCCC---CcCCCceEEEEEecCCC--------CccCCc---eE--EEeecCceEEEecCCCCCCCCCccee
Confidence 7899999554443 56999999999764210 011112 11 4699999999732 2 2 24
Q ss_pred EEEecCCCeEEcCCeeeeccHHHHHHHhcCc
Q 004568 577 EIIDRKKDIVKLQHGEYISLGKVEAALISSD 607 (744)
Q Consensus 577 ~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p 607 (744)
...||.||+++++ |.+|+|.+||++|.+++
T Consensus 324 ~~~gR~dd~~~~~-g~~~~p~~ie~~l~~~~ 353 (445)
T TIGR03335 324 LNPEREAETIWIS-GVPFNRVDVERAVFQRE 353 (445)
T ss_pred CCCcccCceEEEC-CEEeCHHHHHHHHhccC
Confidence 5579999999995 99999999999999953
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=214.38 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=159.2
Q ss_pred HHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcH
Q 004568 88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCV 166 (744)
Q Consensus 88 ~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ 166 (744)
+..+++++|+++|+++.+ |+. ++.+.+||+||.++++++|+.|++ .|+++||+|+|+++|++
T Consensus 2 ~~~~~~~~p~~~al~~~~----------~~~-------~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~ 64 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYD----------DAT-------GERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW 64 (227)
T ss_pred hhhhhhhCCCCcEEEEEc----------CCC-------CeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 567888999999998631 110 112469999999999999999998 79999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCCCCcCCCccCC
Q 004568 167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246 (744)
Q Consensus 167 e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 246 (744)
+++++++||+++|++++|++ ++++++++++++..+.+. .+ +.++.+........ ...
T Consensus 65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~---~~~ 121 (227)
T TIGR03089 65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRR---VAG 121 (227)
T ss_pred HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccC---CCC
Confidence 99999999999999999995 789999999988766643 11 22333221100000 000
Q ss_pred CCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhCCCCCCCcEEEecCCh
Q 004568 247 ISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326 (744)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~Pl 326 (744)
.......+|.+..........+.....++|++.|+||||+ +|++++... ... ++.++|+++ .+|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl 186 (227)
T TIGR03089 122 ELPPGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAW 186 (227)
T ss_pred CCCCcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCC
Confidence 0011223565554422222111114567999999999986 666666554 334 789999999 9999
Q ss_pred HHHHHHHH-HHHHHHhcceEEe---CCcccccccchhhccCccccceEecce
Q 004568 327 AHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPT 374 (744)
Q Consensus 327 ~h~~g~~~-~~~~l~~G~~~v~---~~~~~~~~~~~~~~~~~~~~i~~~~~T 374 (744)
+|++|+.. .+.+|..|+++++ +++..+++. |+++|||
T Consensus 187 ~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT 227 (227)
T TIGR03089 187 TDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT 227 (227)
T ss_pred CchHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence 99999965 5678999999988 777777776 8888886
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=201.68 Aligned_cols=282 Identities=20% Similarity=0.160 Sum_probs=201.7
Q ss_pred CCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC--CCCCCCcEEEecCChHH-HHHHHHHHHHHHhcceEE
Q 004568 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAH-VLELAAESIMLCAGCAIG 346 (744)
Q Consensus 270 ~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~Pl~h-~~g~~~~~~~l~~G~~~v 346 (744)
.....++...|--||||||.|+-+.+++..+......+.+.+ .+...+|++..+.-+.. ..|+..-+.+--.|+++.
T Consensus 85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi 164 (438)
T COG1541 85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI 164 (438)
T ss_pred ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence 344556677789999999999999999998877666655543 37778888776554211 112222233334566655
Q ss_pred eCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccch
Q 004568 347 YGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426 (744)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (744)
-.++..+ ....+.++.+++|++.++|+.+..|++.+.+.....
T Consensus 165 p~~~g~~--------~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~----------------------------- 207 (438)
T COG1541 165 PISGGNT--------ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP----------------------------- 207 (438)
T ss_pred ccCCccH--------HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh-----------------------------
Confidence 4433211 112334999999999999999999988765432100
Q ss_pred hhhhHHHHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccc-cccCCCCCCCCccCCCc--
Q 004568 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-TFSEWDDPSVGRVGPPV-- 503 (744)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~-- 503 (744)
.-.+||.+++|+|+++++..+.+.+.+|+..++.||+||..+.. .-+... . |..+
T Consensus 208 ----------------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~-----~-glhi~e 265 (438)
T COG1541 208 ----------------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER-----N-GLHIWE 265 (438)
T ss_pred ----------------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc-----c-CCCcch
Confidence 01389999999999999999999999999999999999997663 111111 1 3323
Q ss_pred CccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCC----Ce----
Q 004568 504 PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GC---- 575 (744)
Q Consensus 504 ~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G~---- 575 (744)
.+.-+.|+||++|.+ ++.|+.|||++..- +++.+ +- --|+|||++.+.++ |.
T Consensus 266 D~~~~Ei~dP~t~e~---l~dge~GelV~T~L------------~~~~~---Pl--IRYrtgDit~i~~~~C~cGr~~~r 325 (438)
T COG1541 266 DHFIFEIVDPETGEQ---LPDGERGELVITTL------------TKEGM---PL--IRYRTGDITVILSDPCGCGRTHRR 325 (438)
T ss_pred hhceeeeecCCcCcc---CCCCCeeEEEEEec------------cccCc---ce--EEEEcCCeeEecccCCCCCCcccc
Confidence 678889999888887 45889999998753 22222 22 57999999999763 32
Q ss_pred -EEEEecCCCeEEcCCeeeeccHHHHHHHhcCcCcc---eEEEEecCCCCeEEEEEEcCH
Q 004568 576 -LEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD---NIMIHADPFHNYCVALVVPSH 631 (744)
Q Consensus 576 -l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~~p~V~---~a~V~g~~~~~~~~A~vv~~~ 631 (744)
..|.||.||+++++ |.+|+|..||.+|.+.+.+. ++.+......+.+..-|...+
T Consensus 326 i~~I~GR~dD~l~~~-G~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~ 384 (438)
T COG1541 326 IERIEGRSDDMLIVR-GVNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELEN 384 (438)
T ss_pred ccccCcccccEEEEC-CEEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecC
Confidence 57999999999997 99999999999999999999 666666333345666666654
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-20 Score=190.90 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=98.3
Q ss_pred eeEeeCcEEEE-cCCCeEEEEecCCCeEEcCCe---eeeccHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcCHH
Q 004568 560 CWFYTGDIGQV-YPDGCLEIIDRKKDIVKLQHG---EYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALVVPSHK 632 (744)
Q Consensus 560 gw~~TGDlg~~-d~dG~l~i~GR~~d~Iki~~G---~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~---~~~A~vv~~~~ 632 (744)
|||+|||+|++ |+||+|+|+||.| +| +||+|. ||++|.+||+|.+|+|+|.+++. .++|+|++..+
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~ 281 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELP 281 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC
Confidence 99999999998 7999999999997 58 899999 99999999999999999998764 49999987531
Q ss_pred HHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccchhhhhhccchhhhhHHHHHhcCCCCccceeEEEEecCC
Q 004568 633 ALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPEP 712 (744)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~P~~i~~~~~~ 712 (744)
. + .++|++ +|+ .+|+. ++|++|.+++++
T Consensus 282 ~------------~---------------~~el~~-----------------------~l~-~~L~~-kvP~~v~~v~~l 309 (365)
T PRK09188 282 A------------D---------------EKSLRA-----------------------RLA-GAKPP-KPPEHIQPVAAL 309 (365)
T ss_pred C------------C---------------HHHHHH-----------------------HHH-hhchh-cCCcEEEEECCC
Confidence 0 0 146677 777 68999 999999999998
Q ss_pred CCCCCCccccccccChHHHHHHHHH
Q 004568 713 WTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 713 ~~p~~~~~t~~GKi~R~~l~~~~~~ 737 (744)
| +|++|||+|+.|++...+
T Consensus 310 --P----~t~~GKi~R~~Lr~~~~~ 328 (365)
T PRK09188 310 --P----RDADGTVRDDILRLIAMN 328 (365)
T ss_pred --C----CCCCCCccHHHHHHHhhc
Confidence 8 999999999999987633
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=178.84 Aligned_cols=451 Identities=16% Similarity=0.140 Sum_probs=287.6
Q ss_pred CCCCHHHHHHHHHHhCCCCcceEEeeeccccccccCCCcceeeccCCCcEEEeHHHHHHHHHHHHH-HHHhCCCCCCCEE
Q 004568 80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFAS-GLVNFGHNVDTRA 158 (744)
Q Consensus 80 ~~~tl~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~Ty~eL~~~v~~lA~-~L~~~Gv~~gd~V 158 (744)
....+..+++..-.+++..+|.++- |.+ |....+||..+..++.++|+ .|-+-|+.++|+|
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~v 153 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRV 153 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEE
Confidence 3456677777777888999999885 444 33568999999999999999 6777799999999
Q ss_pred EEEcCCc--HHHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEEECchhhhHHHHhhccCCCeeEEEEecCCC
Q 004568 159 AILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 159 ~i~~~n~--~e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
.++...+ .|+++..++|..+|.+++|+++..+.+++..+++....+++++.......+........-.+.+-+
T Consensus 154 vL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~----- 228 (1363)
T KOG3628|consen 154 VLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAW----- 228 (1363)
T ss_pred EEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHh-----
Confidence 9999766 899999999999999999999999999999999999999999987665444332210000000000
Q ss_pred CCcCCCccCCCCCceEeeHHHHHHcCCCCCCCCCCCCCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC-----
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----- 311 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----- 311 (744)
+....+.-.. .......+...-. .++|-||++++|+--|++.+|+ ++.+.+.+....
T Consensus 229 -------------w~t~~~k~~~---~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa 290 (1363)
T KOG3628|consen 229 -------------WKTNDFKGNY---TKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPA 290 (1363)
T ss_pred -------------hhccccccee---ehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChH
Confidence 0000000000 0000001111222 7899999999999999999998 554443322211
Q ss_pred --------------CCCCCCcEEEecCChHHHHHHHH-HHHHHHhcceEEeCCcccccccchhhccCccccceEecceEE
Q 004568 312 --------------PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376 (744)
Q Consensus 312 --------------~~~~~~d~~l~~~Pl~h~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l 376 (744)
.+....+.++..+......|++. .+.++++|.|....+.. ++.. +-.+...+.++|.+++
T Consensus 291 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~-~l~~----pG~~~~l~~k~R~~~~ 365 (1363)
T KOG3628|consen 291 RFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKE-VLKP----PGLIANLITKYRATWS 365 (1363)
T ss_pred HHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchh-hcCC----CcchhhhhccceeEEE
Confidence 13455677777777777777765 46679999888663222 1111 2223334888999988
Q ss_pred eechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHHhcCcEEEEEEecCC
Q 004568 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456 (744)
Q Consensus 377 ~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~ 456 (744)
..--..+........+ .....+.|++-+..+.+++|.+.+.-..
T Consensus 366 ltd~~~Lkq~~~ny~~------------------------------------~p~a~~s~~k~~t~d~sslk~C~Vtc~~ 409 (1363)
T KOG3628|consen 366 LTDYAGLKQPVYNYQE------------------------------------DPKATLSFKKYKTPDLSSLKGCMVTCTA 409 (1363)
T ss_pred eecccccCcccccccC------------------------------------CcccccchhhccCCCccceeeeEEeeee
Confidence 7654444433221111 1112223444455567899999999999
Q ss_pred CCHHHHHHHHhhc----CCc-eeccc-----------------ChhhhcccccccCCCCC--------------------
Q 004568 457 LSADSQRFINICM----GAP-IGQAY-----------------GLTETCAGSTFSEWDDP-------------------- 494 (744)
Q Consensus 457 l~~~~~~~~~~~~----g~~-i~~~Y-----------------G~TE~~~~~~~~~~~~~-------------------- 494 (744)
+..+..+...+++ |.. +...| +++|.+...-..+....
T Consensus 410 vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~ 489 (1363)
T KOG3628|consen 410 VDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVE 489 (1363)
T ss_pred cchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEE
Confidence 9998766555443 221 11112 33454443322221000
Q ss_pred ----------CCCccCCCcCc-cEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccC--------
Q 004568 495 ----------SVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD-------- 555 (744)
Q Consensus 495 ----------~~~~vG~p~~~-~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~-------- 555 (744)
....+|...|| +.+.+++++.... |+++++|||||.++++..+||.-+..|...|...
T Consensus 490 v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~L---C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~ 566 (1363)
T KOG3628|consen 490 VDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQL---CKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKP 566 (1363)
T ss_pred EcchhhhhhcCccccceecccceEEEEeCCCcccc---cccCcceeEEEecCCcccceeeccccccceEEeeeccccCCC
Confidence 01224555554 5667777544433 8899999999999999999998887777776531
Q ss_pred CCcceeEeeCcEEEEcCCCeEEEEecCCCeEEcCCeeeeccHH----------HHHHHhcCcCcceEEEEe
Q 004568 556 ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGK----------VEAALISSDYVDNIMIHA 616 (744)
Q Consensus 556 ~~g~gw~~TGDlg~~d~dG~l~i~GR~~d~Iki~~G~~V~p~e----------IE~~l~~~p~V~~a~V~g 616 (744)
+....+.|||=+|++. +|.++|+|-++|++.--.|.+.+..+ |+.+.+..+.|-++.++-
T Consensus 567 ~~n~~FmRtGLlGFv~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~ 636 (1363)
T KOG3628|consen 567 PSNVPFMRTGLLGFVH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE 636 (1363)
T ss_pred Cccchhhhhcceeeee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence 1123689999999997 55566666555554332376665433 455556677888888887
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-14 Score=151.30 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=156.0
Q ss_pred EEEEecCCCCCcchhhhhchHHHHHHHHHHHh-hC-CCCCCCcEEEecC--ChHHHHHHHHHHHHHHhc-ceEEeCCccc
Q 004568 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LI-PNPGRSDVYLAYL--PLAHVLELAAESIMLCAG-CAIGYGSTLT 352 (744)
Q Consensus 278 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~~-~~~~~~d~~l~~~--Pl~h~~g~~~~~~~l~~G-~~~v~~~~~~ 352 (744)
..+..||||||.|-.+..+............. .. .++..++++..++ +. +.+ ..+... ..+.+++..
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l~- 173 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDLL- 173 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCCC-
Confidence 45778999999999999988866443332222 22 2455556555542 11 111 111111 112222221
Q ss_pred ccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccccchhhhhHH
Q 004568 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD 432 (744)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (744)
+. ....+..|++++||++.+.|+.+..|++...+...
T Consensus 174 --~~----~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l------------------------------------- 210 (430)
T TIGR02304 174 --AP----FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL------------------------------------- 210 (430)
T ss_pred --cC----HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------
Confidence 11 22234449999999999999999999875432110
Q ss_pred HHHHHHHHHHhcCcEEEEEEecCCCCHHHHHHHHhhcCCceecccChhhhcccccccCCCCCCCCccCCCcCccEEEEEe
Q 004568 433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS 512 (744)
Q Consensus 433 ~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d 512 (744)
..+++.++++||+++++..+.+++.||+++++.||+|| |.++..+..+.. .+-...--+|..++|
T Consensus 211 -----------~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~l---Hl~ed~~~vE~~ivD 275 (430)
T TIGR02304 211 -----------TIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGTL---HLNEDLVHIEKQYLD 275 (430)
T ss_pred -----------CCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCCE---EEccccEEEEeeEEC
Confidence 02689999999999999999999999999999999999 544333321110 110001112333666
Q ss_pred cCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcCC----Ce----E-EEEecCC
Q 004568 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPD----GC----L-EIIDRKK 583 (744)
Q Consensus 513 ~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~d----G~----l-~i~GR~~ 583 (744)
+++ .++.+|+ ++.| .++ += --|+|||++.+.++ |. | .|.||.+
T Consensus 276 -~~~----------~~~~ViT------~L~n------~~~---Pl--IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~d 327 (430)
T TIGR02304 276 -EHK----------RFVPIIT------DFTR------TTQ---PI--VRYRLNDILVESEQPCSCGSATMAIERIEGRQD 327 (430)
T ss_pred -CCC----------ceEEEEe------cCCC------ccc---eE--EeeeCCCEEEeCCCCCCCCCcccccCCccCccC
Confidence 222 1233333 2322 111 11 46999999998544 32 3 4889999
Q ss_pred CeEEc--CCeee--eccHHHHHHH-hcCcCcceEEEEecCCCCeEEEEEEcCH
Q 004568 584 DIVKL--QHGEY--ISLGKVEAAL-ISSDYVDNIMIHADPFHNYCVALVVPSH 631 (744)
Q Consensus 584 d~Iki--~~G~~--V~p~eIE~~l-~~~p~V~~a~V~g~~~~~~~~A~vv~~~ 631 (744)
|++++ .+|.. |+|..++.+| ...++|.+..++... ...+...+++.+
T Consensus 328 D~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~ 379 (430)
T TIGR02304 328 DIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL 379 (430)
T ss_pred CEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence 99985 35555 4999999885 468899998887654 344444555544
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-09 Score=87.76 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=53.3
Q ss_pred HHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHhccccccc
Q 004568 598 KVEAALISSDYVDNIMIHADPFH---NYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSR 674 (744)
Q Consensus 598 eIE~~l~~~p~V~~a~V~g~~~~---~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 674 (744)
|||++|.+||+|.+|+|++.++. ..++|+|++ .. ++|++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~~-----------------------------~~i~~------- 42 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--DE-----------------------------EEIRD------- 42 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--HH-----------------------------HHHHH-------
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--ee-----------------------------ccccc-------
Confidence 79999999999999999999866 369999998 21 45666
Q ss_pred hhhhhhccchhhhhHHHHHhcCCCCccce--eEEEEecC-CCCCCCCccccccc
Q 004568 675 TEFFLSRRYKTTLCLQVAKAAKLDKFEIP--AKIKLMPE-PWTPEAGLVTAALK 725 (744)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~P--~~i~~~~~-~~~p~~~~~t~~GK 725 (744)
+++ .+|++|++| ..++.+++ + | +|++||
T Consensus 43 ----------------~~~-~~l~~~~~P~~~~~v~~~~~l--P----~t~~GK 73 (73)
T PF13193_consen 43 ----------------HLR-DKLPPYMVPRRIRFVRLDEEL--P----RTPSGK 73 (73)
T ss_dssp ----------------HHH-HHS-GGGS-SEEEEEEESSSE--E----BETTSS
T ss_pred ----------------chh-hhCCCcceeeEEEEccccCcC--C----CCCCCC
Confidence 666 579999999 55555577 7 8 999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-07 Score=95.15 Aligned_cols=244 Identities=16% Similarity=0.156 Sum_probs=131.8
Q ss_pred CCCCeEEEEecCCCCCcchhhhhchHHHHHHHHHHHhhC---CCCCC-CcEEEecCChHHHHH-HH----HHHHHHHhcc
Q 004568 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGR-SDVYLAYLPLAHVLE-LA----AESIMLCAGC 343 (744)
Q Consensus 273 ~~dd~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~-~d~~l~~~Pl~h~~g-~~----~~~~~l~~G~ 343 (744)
.++++..++-||||||.|--+.+.+..+..+...+...+ .+... .-.++...|-..... +. .....+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677889999999998555565555555544433322 12222 223344344322111 11 1112233344
Q ss_pred eEEeCCcccccccchhhccCccccceEecceEEeechHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhcccccc
Q 004568 344 AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGA 423 (744)
Q Consensus 344 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~T~l~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 423 (744)
...+ +... ++.. .....+...-.+.++..+++.|.++-.++..+.+.....
T Consensus 167 ~~~l-~~~~-ld~~-~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~-------------------------- 217 (365)
T PF04443_consen 167 RFAL-DNDE-LDLE-GLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF-------------------------- 217 (365)
T ss_pred eeee-cCCc-cCHH-HHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc--------------------------
Confidence 4222 1111 1110 001111222356778899999987766655432211100
Q ss_pred cchhhhhHHHHHHHHHHHHhcCcEEEEEEec------CCCCH-HHHHHHHhhcCC----ceecccChhhhcccccccCCC
Q 004568 424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGG------APLSA-DSQRFINICMGA----PIGQAYGLTETCAGSTFSEWD 492 (744)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG------~~l~~-~~~~~~~~~~g~----~i~~~YG~TE~~~~~~~~~~~ 492 (744)
.+.+..+.+-.|| +.++. ++.+.+++.+|+ .+++.|||||......-+...
T Consensus 218 ------------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~ 279 (365)
T PF04443_consen 218 ------------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG 279 (365)
T ss_pred ------------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC
Confidence 0012345555555 45765 457788888898 599999999976544433111
Q ss_pred CCCCCccCCCcCccEEEEEecCCCCccCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcC
Q 004568 493 DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP 572 (744)
Q Consensus 493 ~~~~~~vG~p~~~~~v~i~d~~~~~~~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~ 572 (744)
. .++|-. |.|.|+++..+ ++.|+.|-|.+-.+... .| . +..-|.|+|.+..
T Consensus 280 ~-------~~~p~w-V~iRDp~tl~~---~~~Ge~Gli~vidl~~~-s~---------------p--~~IlTeDlGvl~~ 330 (365)
T PF04443_consen 280 H-------FHVPPW-VIIRDPETLEP---LPPGETGLIQVIDLANT-SY---------------P--GFILTEDLGVLHG 330 (365)
T ss_pred c-------ccCCCe-EEEECCCCCcC---CCCCCeeEEEEEccccc-CC---------------C--cEEEEcceeeecC
Confidence 1 123333 77778666543 67899999988665321 11 1 4577999998865
Q ss_pred C--------CeEEEEecCCCeEEcCCeeee
Q 004568 573 D--------GCLEIIDRKKDIVKLQHGEYI 594 (744)
Q Consensus 573 d--------G~l~i~GR~~d~Iki~~G~~V 594 (744)
+ .++.++||.+.-=. | |-..
T Consensus 331 ~~~c~cr~g~~f~vlGR~~~ae~-R-GCs~ 358 (365)
T PF04443_consen 331 DDDCGCRKGKYFEVLGRADGAEI-R-GCSL 358 (365)
T ss_pred CCCCCCccCCEEEEEeCCCCCcc-C-CcHH
Confidence 4 27999999875442 4 5443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=86.47 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=85.4
Q ss_pred cCcEEEEEEecCCCCHHHHHHHHhhcC-Cc-eecccChhhhcccccccCCCCCCCCccCCCcCcc-EEEEEecCCCC---
Q 004568 444 GGRIRFMICGGAPLSADSQRFINICMG-AP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLVSWDEGG--- 517 (744)
Q Consensus 444 ~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~-i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~~~~--- 517 (744)
-++|+++.+-+..-.....+.++..+| ++ +..+|++||+-..+... ++. ..+.+.++. -...++.++..
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~~----~~~~l~~~~~ffEFip~~~~~~~~ 340 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PED----PGYVLAPDSGFFEFIPVDEDEQNP 340 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CCC------EEE-TTSSEEEEEE-STT----
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CCC----CceEeecCCeEEEEEeccCCcccc
Confidence 478996655444434444556666564 33 45889999964333222 111 112222221 33444433321
Q ss_pred -----cc--CCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcC--CC--eEEEEecCCCeE
Q 004568 518 -----YK--TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP--DG--CLEIIDRKKDIV 586 (744)
Q Consensus 518 -----~~--~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~--dG--~l~i~GR~~d~I 586 (744)
.+ ..+..|+.-||+|... .|.| -|+.||++++.. ++ .+.|+||.+.++
T Consensus 341 ~~~~~~l~~~ele~G~~YelviTt~---~GLy------------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l 399 (528)
T PF03321_consen 341 SEQPKTLLLHELEVGEEYELVITTN---SGLY------------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVL 399 (528)
T ss_dssp ---SSSEEGGG--TT-EEEEEEEST---TS-S------------------SEEECEEEEEEEEETTEEEEEEEEETTEEE
T ss_pred cCCCceecHHHhcCCCeEEEEEecc---ccee------------------eeecCCEEEEeeccCCCcEEEEeccCCcee
Confidence 10 1144555666776532 2322 389999999842 34 799999999999
Q ss_pred EcCCeeeeccHHHHHHHhcC-----cCcceEEEEecC---CCCeEEEEEEcCHH
Q 004568 587 KLQHGEYISLGKVEAALISS-----DYVDNIMIHADP---FHNYCVALVVPSHK 632 (744)
Q Consensus 587 ki~~G~~V~p~eIE~~l~~~-----p~V~~a~V~g~~---~~~~~~A~vv~~~~ 632 (744)
.+. |++++-.+|++++.+. -.+.+.++.... .+..-+-++.+...
T Consensus 400 ~l~-gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 400 SLF-GEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp -SS-S--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred ecc-eeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 995 9999999999999763 235666666652 33455666665543
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=74.07 Aligned_cols=136 Identities=14% Similarity=0.207 Sum_probs=78.8
Q ss_pred hcCc---EEEEEEecCCCCHHHHHHHHhhc-CC-ceecccChhhhcccccccCCCCCCCCccCCC--cCccEEEEEecCC
Q 004568 443 LGGR---IRFMICGGAPLSADSQRFINICM-GA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPP--VPCCYIKLVSWDE 515 (744)
Q Consensus 443 ~~~~---lr~i~~gG~~l~~~~~~~~~~~~-g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p--~~~~~v~i~d~~~ 515 (744)
+-++ +.++..||.. .-...++..+ +. .+..+|++||+-..+-..+ ...+..++.. +.+.-...++.++
T Consensus 300 lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~--~~~p~~~~~~l~~~~~ffEFiP~~~ 374 (597)
T PLN02249 300 IWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNP--MCKPSEVSYTIMPNMAYFEFLPHNH 374 (597)
T ss_pred hCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCC--CCCCCCcceEecCCcEEEEeeeccc
Confidence 4467 6677777765 3445555544 33 3668999999654332211 1111122222 1233344443221
Q ss_pred C-C-------c--cCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEcC----CCeEEEEec
Q 004568 516 G-G-------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYP----DGCLEIIDR 581 (744)
Q Consensus 516 ~-~-------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d~----dG~l~i~GR 581 (744)
. . . +..++.|+.=||+|.. ..|-| -|+.||+.++.. --.|.|+||
T Consensus 375 ~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLy------------------RY~iGDvVrvtgf~~~~P~i~F~gR 433 (597)
T PLN02249 375 DGDGALDETSLVELADVEVGKEYELVITT---YAGLY------------------RYRVGDILRVTGFHNSAPQFKFIRR 433 (597)
T ss_pred CCcccCCCCcEecHHHcCCCCeEEEEEEc---cccee------------------EeecCCEEEEeeccCCCcEEEEEcc
Confidence 1 1 0 0113444555566542 12222 389999999852 246999999
Q ss_pred CCCeEEcCCeeeeccHHHHHHHhc
Q 004568 582 KKDIVKLQHGEYISLGKVEAALIS 605 (744)
Q Consensus 582 ~~d~Iki~~G~~V~p~eIE~~l~~ 605 (744)
.+.++.+ .|+++.-.+++.++.+
T Consensus 434 ~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 434 KNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred CCcceec-ccccCCHHHHHHHHHH
Confidence 9999998 5999999999998876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0022 Score=71.68 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCcee-cccChhhhcccccccCCCCCCCCcc-CCCcCccE-EEEEecCCC
Q 004568 441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRV-GPPVPCCY-IKLVSWDEG 516 (744)
Q Consensus 441 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~v-G~p~~~~~-v~i~d~~~~ 516 (744)
..+-+++++|.+-...-.......++... |++++ -+||+||+-..+-..+.. .+..+ ...+|+.. ...++.+++
T Consensus 289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~--~p~~~sy~L~p~~~yFEFip~~~~ 366 (606)
T PLN02247 289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLS--DPSDVSYTLLPNMAYFEFLPVDKN 366 (606)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCC--CccCCceeecCCcEEEEEeecCCC
Confidence 34557888877744443444455555444 66655 589999975544333221 11222 22234432 233332222
Q ss_pred Cc--------------------------cCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEE
Q 004568 517 GY--------------------------KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQV 570 (744)
Q Consensus 517 ~~--------------------------~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~ 570 (744)
.. +..++.|+.=||+|.. +.|. =-||.||+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GL------------------YRYrlGDvv~V 425 (606)
T PLN02247 367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGL------------------YRYRVGDILMV 425 (606)
T ss_pred cccccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCce------------------EEEecCCEEEE
Confidence 10 0013444455555532 1121 14889999998
Q ss_pred c----CCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhc
Q 004568 571 Y----PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (744)
Q Consensus 571 d----~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~ 605 (744)
. .--.+.|++|.+.+..+ .|+|.+-.++-.++.+
T Consensus 426 ~GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 426 TGFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ 463 (606)
T ss_pred eeecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence 3 34579999999999998 5999999999888865
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.004 Score=69.46 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=81.0
Q ss_pred HHhcCcEEEEEEecCCCCHHHHHHHHhhc-CCcee-cccChhhhcccccccCCCCCCCCccCC-CcCccEE-EEEecCCC
Q 004568 441 AVLGGRIRFMICGGAPLSADSQRFINICM-GAPIG-QAYGLTETCAGSTFSEWDDPSVGRVGP-PVPCCYI-KLVSWDEG 516 (744)
Q Consensus 441 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~~v-~i~d~~~~ 516 (744)
..+-+++++|.+-...-.......++... |++++ -+|++||+-..+-..+. .++..+.. .+|+... ..++.+++
T Consensus 300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~--~~p~~~sy~L~p~~~yFEFip~~~~ 377 (612)
T PLN02620 300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLIPTMAYFEFLPVHRN 377 (612)
T ss_pred HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCC--CCcccceeeecCCcEEEEEeeccCc
Confidence 44557888776654444444445554444 66654 67999997554433332 11222222 2344322 23321110
Q ss_pred -C------------------c--cCCCCCCCCcEEEEccccccccccCCCcccccccccCCCcceeEeeCcEEEEc----
Q 004568 517 -G------------------Y--KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVY---- 571 (744)
Q Consensus 517 -~------------------~--~~~~~~g~~GEl~v~g~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~d---- 571 (744)
+ . +..++.|+.=||+|.. +.|. =-||.||+.++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GL------------------yRYrlGDvv~V~Gf~n 436 (612)
T PLN02620 378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGL------------------YRYRVGDVLRVAGFKN 436 (612)
T ss_pred ccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCce------------------EEEecCCEEEEeeecC
Confidence 0 0 0113444555565532 1121 148999999983
Q ss_pred CCCeEEEEecCCCeEEcCCeeeeccHHHHHHHhc
Q 004568 572 PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605 (744)
Q Consensus 572 ~dG~l~i~GR~~d~Iki~~G~~V~p~eIE~~l~~ 605 (744)
..-.+.|++|.+.+..+ .|+|.+-.++-.++.+
T Consensus 437 ~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 437 KAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred CCceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 33579999999999998 6999999999888854
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.022 Score=47.91 Aligned_cols=63 Identities=11% Similarity=0.012 Sum_probs=38.9
Q ss_pred eeeeccHHHHHHHhcCcCcc-eEEEEe--cCCCCeEEEEEEcCHHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHh
Q 004568 591 GEYISLGKVEAALISSDYVD-NIMIHA--DPFHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667 (744)
Q Consensus 591 G~~V~p~eIE~~l~~~p~V~-~a~V~g--~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 667 (744)
|.||+|.+||++|.++|++. +..++- ..+.+.+...|...++. ..+.....++.+.+.+.|++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~--------------~~~~~~~~~l~~~i~~~lk~ 66 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF--------------SDDAEDLEALAERIAERLKE 66 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC--------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc--------------CcchHHHHHHHHHHHHHHHh
Confidence 78999999999999999998 433332 23334566667666532 00111234556667777776
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.25 Score=53.03 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=76.1
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEE
Q 004568 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (744)
Q Consensus 129 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (744)
--+|+.++...+..+|+.|...|..+||+|..+..-+. .-+-..+|+.++|++++|+.+. .-++...++++.++.++
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 45899999999999999999999999999998877221 1167889999999999999883 45667789999999999
Q ss_pred EECchhhhHHHHhh
Q 004568 207 ICDSKQLKKLSAVS 220 (744)
Q Consensus 207 i~~~~~~~~~~~~~ 220 (744)
.+.+...-.+.+..
T Consensus 187 ~~tps~~l~lae~~ 200 (438)
T COG1541 187 AATPSYLLYLAEEA 200 (438)
T ss_pred EEChHHHHHHHHHH
Confidence 99998876665544
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.07 E-value=6.7 Score=43.05 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=68.0
Q ss_pred EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEEE
Q 004568 130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI 207 (744)
Q Consensus 130 ~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~--e~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 207 (744)
.+|..++......++..+...|+++||++......+. ......+++...|+.+++++... .+.+...|++.++++++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 4688888777777888888889999999887665442 22334677889999999987754 57788999999999999
Q ss_pred ECchhhhHHHH
Q 004568 208 CDSKQLKKLSA 218 (744)
Q Consensus 208 ~~~~~~~~~~~ 218 (744)
..+.....+..
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 99887655543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=86.27 E-value=8.4 Score=42.64 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=65.2
Q ss_pred EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEEcCCCCCHHHHHHHHHhcCceEE
Q 004568 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206 (744)
Q Consensus 129 ~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~vv~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 206 (744)
..+|..++...+...+..+...|+.+||++.++.+.+.. .....+++..+|+.++|... .+....++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 358999999888888988888999999999998876643 23456788999998887653 2345678899999999
Q ss_pred EECchhhhH
Q 004568 207 ICDSKQLKK 215 (744)
Q Consensus 207 i~~~~~~~~ 215 (744)
+......-.
T Consensus 181 ~~~ps~ll~ 189 (445)
T TIGR03335 181 VASVFKLLR 189 (445)
T ss_pred EECHHHHHH
Confidence 887765433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 744 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 3e-18 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-14 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 7e-14 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-13 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-13 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-13 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-13 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-12 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 5e-12 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 6e-12 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-11 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-11 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 3e-11 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 5e-11 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 9e-11 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 9e-11 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 9e-11 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 1e-10 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-09 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-08 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 5e-07 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 5e-07 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 5e-07 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-06 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 1e-06 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 1e-06 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-06 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 2e-05 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 7e-05 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-04 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-04 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 5e-04 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 7e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 2e-67
Identities = 106/490 (21%), Positives = 170/490 (34%), Gaps = 101/490 (20%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
F A TY E F+ + A + +G N + R + +E +++F+
Sbjct: 42 FTDAHIEVNI-----------TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM 90
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
G + V E L++S+N +Q T + K L+K+ V L I+ +I
Sbjct: 91 PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKII 150
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ G S +T + + V S +A+IM +SGSTGLP
Sbjct: 151 IMDSKT-----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLP 205
Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
KGV + H + + I L+ +P H M + G
Sbjct: 206 KGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG------MFTTLGYLICG 259
Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
+ ++ K VP +F + ++ K
Sbjct: 260 FRVVLMYRFEEELFLRSLQD--------YKIQSALLVPTLFSFFAKSTLIDK-------- 303
Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
+D ++ + GGAPLS +
Sbjct: 304 -----------------------------YD---LSNLHEI--------ASGGAPLSKEV 323
Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
+ I Q YGLTET + + D G VG VP K+V D G
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG---- 379
Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
K + RGE+ V G + +GY NNP T+ + +D+ G W ++GDI D
Sbjct: 380 --KTLGVNQRGELCVRGPMIMSGYVNNPEATNAL--IDKDG--WLHSGDIAYWDEDEHFF 433
Query: 578 IIDRKKDIVK 587
I+DR K ++K
Sbjct: 434 IVDRLKSLIK 443
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 1e-66
Identities = 113/490 (23%), Positives = 173/490 (35%), Gaps = 101/490 (20%)
Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
F A G + +Y E +++C L N+G VD R A+ +E C E+FI
Sbjct: 44 FTNAVTGVDY-----------SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFI 92
Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
+ V L+HSL ++ T + K L K+ V ++ TIK ++
Sbjct: 93 PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIV 152
Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
++ G T + S + + VA+IM +SGSTGLP
Sbjct: 153 ILDSK-----VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207
Query: 291 KGVMITHGNIVATAAAIKTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
KGV +TH NIV + + I L +P H M + G
Sbjct: 208 KGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFG------MFTTLGYLICG 261
Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
+ ++ K T + VP +F + ++ K
Sbjct: 262 FRVVMLTKFDEETFLKTLQD--------YKCTSVILVPTLFAILNKSELLNK-------- 305
Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
+D ++ + GGAPLS +
Sbjct: 306 -----------------------------YD---LSNLVEI--------ASGGAPLSKEV 325
Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
+ + Q YGLTET + + D G G VP K++ D
Sbjct: 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTK---- 381
Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLE 577
K + RGE+ V G + GY NNP T E+ +DE G W +TGDIG +
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL--IDEEG--WLHTGDIGYYDEEKHFF 435
Query: 578 IIDRKKDIVK 587
I+DR K ++K
Sbjct: 436 IVDRLKSLIK 445
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 6e-66
Identities = 99/470 (21%), Positives = 172/470 (36%), Gaps = 94/470 (20%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ + +Y E+ RA A+ LV G V R A E VE + + R
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
+ + ++ L + + + + ++CD + ++A+++ + + + GS D+
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
+ T+ R D A I+YTSG+TG KG M++H N+ +
Sbjct: 141 AGASEAFATID----------RGADDL--------AAILYTSGTTGRSKGAMLSHDNLAS 182
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSK 359
+ + DV + LP+ H L + + + ++ D
Sbjct: 183 NSLTLVDYW-RFTPDDVLIHALPIYHTHGL-----FVASNVTLFARGSMIFLPKFDPDKI 236
Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
+ + + T++ VP + R L
Sbjct: 237 LD-------LMARATVLMGVPTFYTR---------------------------LLQSPR- 261
Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
+R I G APL AD+ R + G + + YG+
Sbjct: 262 -----------LTKETTGH--------MRLFISGSAPLLADTHREWSAKTGHAVLERYGM 302
Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
TET ++ D G VGP +P ++ + G K +PR G I V G N
Sbjct: 303 TETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETG------KELPRGDIGMIEVKGPN 356
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V GY+ P KT ++ D G +F TGD+G++ G + I+ R KD+V
Sbjct: 357 VFKGYWRMPEKTKSEFRDD--G--FFITGDLGKIDERGYVHILGRGKDLV 402
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-64
Identities = 94/518 (18%), Positives = 177/518 (34%), Gaps = 107/518 (20%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
++A + + + + + + + + + E+ +
Sbjct: 20 SLADRIDAAAEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKK 64
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
ASG+ G + +++ + +R + T V I L H LN+++
Sbjct: 65 LASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSE 124
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
TTL+ S + V ++ V + V+S SEV G
Sbjct: 125 ATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------------VNSLSEVMDSG 167
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
+ + + VA+I YT G+TG+PKGVM+TH N+ A A + D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVG 226
Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTKGDVSVLKPTLMAAVP 380
+P+ H E ++M+ G + M + + ++ K T AVP
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEY-----VVMGMFNQEMLAE-----NIEKYKGTFSWAVP 276
Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
+ L L + + +
Sbjct: 277 PALN--------------VLVNTLESSNKTYDWSYL------------------------ 298
Query: 441 AVLGGRIRFMICGGAPLSAD-SQRF------INICMGAPIGQAYGLTETCAGSTFSEWDD 493
+ G P++ ++ Q +G+TE C T +
Sbjct: 299 -------KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 494 PS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTS 549
G P+ +K++S ++G + + GEIV+ G N+ GY+ +
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDG------RELGVGESGEIVIRGPNIFKGYWKREKENQ 405
Query: 550 EVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
E + DE+G +F TGD+G + +G L DR K+++K
Sbjct: 406 ECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIK 443
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-62
Identities = 102/474 (21%), Positives = 164/474 (34%), Gaps = 104/474 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +V A ASGL G + + E+ +AF G + +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L ++ LI + +K+ + +K + DS G
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCV--------DSAPDG------ 155
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
FSE+ + + + S + V + Y+SG+TGLPKGVM+TH ++ + A
Sbjct: 156 CLHFSELTQADENEAPQVDI-SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD 214
Query: 312 P---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKIKK 362
DV L LP+ H+ ++ C + G+ + + I+K
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIY-----ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
K ++ VP + + K+ ++
Sbjct: 270 --------YKVSIAPVVPPVMM--------------SIAKS----------PDLDK---- 293
Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE 481
D S+R + GGAPL + A +GQ YG+TE
Sbjct: 294 --------HD---LSSLRMI--------KSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
Query: 482 TCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVG 533
E D G G V +K+V + G +P GEI +
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG------ASLPRNQPGEICIR 388
Query: 534 GFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
G + GY N+P TS + G W +TGDIG + D L I+DR K+++K
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKE--G--WLHTGDIGYIDDDDELFIVDRLKELIK 438
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 1e-59
Identities = 102/476 (21%), Positives = 168/476 (35%), Gaps = 100/476 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
TY +V + A+ G N + +L C E+ ++F + T
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
+ + +I +++ + K+ + + + I D +E G
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCI----DDNESVPIPEG------ 199
Query: 252 VSSFSEVEKLGKRSPVDPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
F+E+ + + S + V + Y+SG+TGLPKGVM+TH +V + A
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 310 LIP---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKI 360
DV L LP+ H+ ++ C + G+ + + I
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIY-----ALNSIMLCGLRVGAAILIMPKFEINLLLELI 314
Query: 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSW 420
++ K T+ VP I V+ + K+ + E
Sbjct: 315 QR--------CKVTVAPMVPPI-------VL-------AIAKS----------SETEK-- 340
Query: 421 FGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGL 479
+D S+R V G APL + A +GQ YG+
Sbjct: 341 ----------YD---LSSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 480 TETCAGSTFSEWDDPS-----VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIV 531
TE S G G V +K+V D G + GEI
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG------DSLSRNQPGEIC 433
Query: 532 VGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
+ G + GY NNP T+E +D+ G W +TGDIG + D L I+DR K+++K
Sbjct: 434 IRGHQIMKGYLNNPAATAET--IDKDG--WLHTGDIGLIDDDDELFIVDRLKELIK 485
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 2e-57
Identities = 100/488 (20%), Positives = 166/488 (34%), Gaps = 111/488 (22%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
L G+ TY E+ A + A + R A+ A +E +A +
Sbjct: 42 LRFGERSL-TYAELAAAAGATAGRIGG-AG----RVAVWATPAMETGVAVVAALLAGVAA 95
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V + G+ L H L+++ + ++ +
Sbjct: 96 VPLNPKSGDKELAHILSDSAPSLVLAP--------------------------PDAELPP 129
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
G + V + R V A+++YTSG+TG PKG +I +
Sbjct: 130 ALGALERVDVDVRA-------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALAT 182
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT------DT 356
T A+ DV + LPL HV ++L + G ++
Sbjct: 183 TLDALADAWQ-WTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFSTEGA 236
Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
+ ++ G T++ VP ++ R+ +
Sbjct: 237 ARELNDG---------ATMLFGVPTMYHRI--------------------------AETL 261
Query: 417 EGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
A L R ++ G A L I G + +
Sbjct: 262 PADPELAKALAGA------------------RLLVSGSAALPVHDHERIAAATGRRVIER 303
Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN 536
YG+TET ++ +P G VG P+P ++LV ++G + GEI V G N
Sbjct: 304 YGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPN 362
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK-KDIVKLQHGEYIS 595
+ Y N P T+ + D G +F TGD+ PDG + I+ RK D++K G I
Sbjct: 363 LFTEYLNRPDATAAAFTED--G--FFRTGDMAVRDPDGYVRIVGRKATDLIK-SGGYKIG 417
Query: 596 LGKVEAAL 603
G++E AL
Sbjct: 418 AGEIENAL 425
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 4e-57
Identities = 100/472 (21%), Positives = 159/472 (33%), Gaps = 106/472 (22%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
D TY ++ A A L G R A+L VE+ F G + V I
Sbjct: 40 TDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
+ L + L+++ +I + + A+ + V + S
Sbjct: 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA------ 152
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATA 304
E+L + +P++ IMYTSG+TG PKGV+ TH ++ + A
Sbjct: 153 -------------ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA 199
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------TDTSS 358
++ + I + D L LP+ HV L + G TL T S
Sbjct: 200 SSWASTI-DVRYRDRLLLPLPMFHVAALT------TVIFSAMRGVTLISMPQFDATKVWS 252
Query: 359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG 418
I + + + AVPAI + V
Sbjct: 253 LIVEE--------RVCIGGAVPAIL---------------------------NFMRQVPE 277
Query: 419 SWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478
+ + R+ I GGAP+ + + Q Y
Sbjct: 278 ------------FAELDAPDF--------RYFITGGAPMPEALIKIYAA-KNIEVVQGYA 316
Query: 479 LTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGG 534
LTE+C G T +D G G + + + G GE+V+
Sbjct: 317 LTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR--GDDG-----VIREHGEGEVVIKS 369
Query: 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
+ Y+N P T + + + G WF TGDIG++ +G L I DR KD++
Sbjct: 370 DILLKEYWNRPEATRDAF-DN--G--WFRTGDIGEIDDEGYLYIKDRLKDMI 416
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 2e-55
Identities = 85/531 (16%), Positives = 162/531 (30%), Gaps = 137/531 (25%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W + + +SHP A + G+ + +Y E+
Sbjct: 27 WIDQ-PLTRILTVGVQSHP-HS-------------LA--------IICGERQL-SYIELD 62
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
+ + A+ L G A + E++I F + + V+ S + L
Sbjct: 63 RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
+ + Q LI + + ++ + + ++ + ++
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD-------------- 168
Query: 253 SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312
+ + + VD S + VA + GSTG PK + TH + + A +
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC- 227
Query: 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
+ L LP H + G + G + M ++
Sbjct: 228 GLNSNTRLLCALPAPHNFM------LSSPGALGVLHAGGCVVMAPNPEP--------LNC 273
Query: 371 L------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
+ + + VP+ W
Sbjct: 274 FSIIQRHQVNMASLVPSAVI--------------------------------------MW 295
Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
LE+ +S ++ + GGA R + + + Q +G+ E
Sbjct: 296 -LEKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL- 345
Query: 485 GSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGF 535
++ DD + GR IK+V DE + +P G + G
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSD--DEIKIV--DEQY-----REVPEGEIGMLATRGP 395
Query: 536 NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GY+ +P S+V DE ++Y+GD+ Q PDG L ++ R KD +
Sbjct: 396 YTFCGYYQSPEHNSQV--FDEDN--YYYSGDLVQRTPDGNLRVVGRIKDQI 442
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 9e-54
Identities = 94/529 (17%), Positives = 161/529 (30%), Gaps = 137/529 (25%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W G T L + DR A + G+ W +Y E+
Sbjct: 22 WAGE-TFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
RA A+G G R + E+F FR V S + +
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
+ I V S L T+KN+I G +
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA---------GEAEEFLPLE- 167
Query: 253 SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312
+ + + S VA + + GSTGL K + TH + + + +
Sbjct: 168 ------DLHTEPVKLPEVKSSD--VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC- 218
Query: 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL- 371
S VYLA LP+AH L++ ++ + G + ++ + S
Sbjct: 219 WLDHSTVYLAALPMAHNYPLSSPGVL----GVLYAGGRVVLSPSPSP--------DDAFP 266
Query: 372 -----KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
K T+ A VP + W +
Sbjct: 267 LIEREKVTITALVPPLAM--------------------------------------VW-M 287
Query: 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS 486
+ S ++ + GGA SA++ R + G + Q +G+ E
Sbjct: 288 DAASSRRDDLSS--------LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL--V 337
Query: 487 TFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNV 537
++ DDP + G+ P P ++ D+ + + G ++ G
Sbjct: 338 NYTRLDDPEEIIVNTQGK--PMSPYDESRVW--DDHD-----RDVKPGETGHLLTRGPYT 388
Query: 538 TAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
GY+ + E G ++ TGDI ++ DG + + R KD +
Sbjct: 389 IRGYYKAEEHNAAS--FTEDG--FYRTGDIVRLTRDGYIVVEGRAKDQI 433
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 1e-53
Identities = 77/476 (16%), Positives = 139/476 (29%), Gaps = 122/476 (25%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ E+ R + A+ L G R A++A + IA R + L
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
L + ++T + + +++ + +I+ + + + G
Sbjct: 91 AELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLVRDGEPYSYG------ 142
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
P++ A I YTSG+TGLPK +I + + T +
Sbjct: 143 -------------PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 312 P-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
GR +V L +PL H G + L + V
Sbjct: 190 GLRHGRHNVVLGLMPLYH-----------VVGFFAVLVAALAL------------DGTYV 226
Query: 371 L----------------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
+ + T + A P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHL------------------------------- 255
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
L A L +R + GA + ++ +
Sbjct: 256 -------------DALAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKV 301
Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIV 531
YG TE + + P +++V GG D+ + GE++
Sbjct: 302 NIYGTTEAMNSLYMRQPKTGTEMA---PGFFSEVRIV--RIGG--GVDEIVANGEEGELI 354
Query: 532 V-GGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
V + GY N P T+E + + G W+ T D+ P+G + I+ R D++
Sbjct: 355 VAASDSAFVGYLNQPQATAEK--LQD-G--WYRTSDVAVWTPEGTVRILGRVDDMI 405
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-53
Identities = 93/489 (19%), Positives = 158/489 (32%), Gaps = 86/489 (17%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
TYGE+ +RA FAS L G + + R ++ V +AF G +
Sbjct: 42 YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
V + L ++ L + +I ++ ++ S + +
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI----------- 149
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
VS + + E + +P + + +A +Y+SGSTG PKG + TH N+
Sbjct: 150 VSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209
Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSK 359
TA I +DV + L L + AI T ++
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269
Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
+ + +PT+ VP ++ +
Sbjct: 270 LVE--------HRPTVFYGVPTLY---------------------------ANMLVSPN- 293
Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
A ++R G L + G I G
Sbjct: 294 -----------LPARADVAIRIC--------TSAGEALPREIGERFTAHFGCEILDGIGS 334
Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
TE + G G PVP I+L DE G +P G++ + G +
Sbjct: 335 TEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR--DEAG-----HAVPDGEVGDLYIKGPS 387
Query: 537 VTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISL 596
Y+NN K+ + + W +GD P+GC R D++K+ G+Y+S
Sbjct: 388 AAVMYWNNREKSRATFLGE-----WIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSP 441
Query: 597 GKVEAALIS 605
+VE L+
Sbjct: 442 VEVEMVLVQ 450
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 4e-52
Identities = 80/484 (16%), Positives = 144/484 (29%), Gaps = 110/484 (22%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ G+ + +Y E+ A + A L G A + E +I F + +
Sbjct: 44 VIDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDGS 237
V S L ++ + LI D + L+ + +I+ V + G
Sbjct: 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
+ + P+ + VA + G+TG PK + TH
Sbjct: 163 H---------------NLQDAINHPAEDFTATPSPA-DEVAYFQLSGGTTGTPKLIPRTH 206
Query: 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTD 355
+ + + + YL +P AH M G G T+ +
Sbjct: 207 NDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYA------MSSPGSLGVFLAGGTVVLAA 259
Query: 356 TSSKIKKGTKGDVSVL------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY 409
S + + A VP
Sbjct: 260 DPSA--------TLCFPLIEKHQVNVTALVPPAV-------------------------- 285
Query: 410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469
L + + + GGA LSA I +
Sbjct: 286 -SLWLQALIEGESRAQLASL------------------KLLQVGGARLSATLAARIPAEI 326
Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPM 525
G + Q +G+ E T DD + + G P+ P + + D G P+
Sbjct: 327 GCQLQQVFGMAEGLVNYTRL--DDSAEKIIHTQGYPMCPDDEVWVA--DAEG-----NPL 377
Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
P+ G ++ G GY+ +P + D G ++ +GD+ + P+G + + R+
Sbjct: 378 PQGEVGRLMTRGPYTFRGYYKSPQHNASA--FDANG--FYCSGDLISIDPEGYITVQGRE 433
Query: 583 KDIV 586
KD +
Sbjct: 434 KDQI 437
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-28
Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 36/273 (13%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGL-VNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
+ G + TY ++ A A L R + + ++ I C+ +I
Sbjct: 20 ITDGQESY-TYQNLYCEASLLAKRLKAYQQ---S-RVGLYIDNSIQSIILIHACWLANIE 74
Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
+ I + L + + + + V + C + + S +G ++
Sbjct: 75 IAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNT 134
Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLPKGVMITHGN 299
++ + K SP + S N +A IM+TSG+TG K V T N
Sbjct: 135 MGIQYDTSNE-------TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN 187
Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------ 353
A+A K + R +L+ LP+ H+ + S++L A+ G T+ +
Sbjct: 188 HYASAIGCKESL-GFDRDTNWLSVLPIYHI---SGLSVLL---RAVIEGFTVRIVDKFNA 240
Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
+ IK + T ++ VP + +
Sbjct: 241 EQILTMIKNE--------RITHISLVPQTLNWL 265
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPP 502
++ ++ GGA LSA + + PI ++G+TETC+ + + VG P
Sbjct: 275 NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+K+ + GE+++ G NV GY + ++ + G +F
Sbjct: 333 SANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPT-DLTGTFE-N--G--YF 377
Query: 563 YTGDIGQVYPDGCLEIIDRKKDIV 586
TGDI ++ +G + I DR+KD++
Sbjct: 378 NTGDIAEIDHEGYVMIYDRRKDLI 401
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-27
Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 18/223 (8%)
Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
+ T+ + RA ASGL+ G + R AIL++ C E +
Sbjct: 25 FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83
Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
+ + L D + L + + ++ + ++ V SL +K +
Sbjct: 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG----- 138
Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
F+ + L +P VI++T+ G P+G +I+ GN++
Sbjct: 139 -----------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187
Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
+++ +DV L LPL HV L + AG A
Sbjct: 188 AQSSLVDAWR-LTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS 229
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+R + P + +RF C A +G +ET STF+ + D G P+
Sbjct: 273 SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFW 329
Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWF 562
+ +V D +P+P GEIV+ G V GY+NN T ++ + G W
Sbjct: 330 RTVAVV--DAED-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-N--G--WH 377
Query: 563 YTGDIGQVYPDGCLEIIDR--KKDIVK 587
+TGD+G+ DG L R +K+++K
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK 404
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 81/501 (16%), Positives = 161/501 (32%), Gaps = 117/501 (23%)
Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
+ E+ + + A+ L G R A++ EW++ GC R + + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
+++ L ++ ++ + ++++ V+S +++ + + G N+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD-------GWLNF 187
Query: 251 T--VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
++ S + + + I +TSG++GLPK ++
Sbjct: 188 KKLLNEASTTHHCVETGSQEA--------SAIYFTSGTSGLPKMAEHSYS---------- 229
Query: 309 TLIPNPGRSDVYLAYLPLA-HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKG-TKG 366
+ L A IM ++DT G
Sbjct: 230 ----------SLGLKAKMDAGWTGLQASDIMWT------------ISDT------GWILN 261
Query: 367 DVSVLKPTLMAAVPAIFDRVRE---GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG- 422
+ L + + V+ K + S G
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-----------------SMMGA 304
Query: 423 --AWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
+ RML + F ++ + G L ++ G I ++
Sbjct: 305 PIVY---RMLLQQDLSSYKFPHLQNCVT--------VGESLLPETLENWRAQTGLDIRES 353
Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVG 533
YG TET S+ G +G C ++++ D+ G +P G+I +
Sbjct: 354 YGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII--DDKG-----NVLPPGTEGDIGIR 406
Query: 534 G-----FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKL 588
+ +GY +NP KT+ + D ++ GD G DG + + R DI+
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIRGD-----FWLLGDRGIKDEDGYFQFMGRADDIINS 461
Query: 589 QHGEYISLGKVEAALISSDYV 609
G I +VE AL+ V
Sbjct: 462 S-GYRIGPSEVENALMEHPAV 481
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-25
Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSV---- 496
+R ++ GG+ RF MG + Q YGLTET + + S
Sbjct: 294 TLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351
Query: 497 ---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKT 548
+ G P+P +++ DE G +P+P+ GE+ + G +T GY+ N T
Sbjct: 352 TLKAKTGLPIPLVRLRVA--DEEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 549 SEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALIS 605
D G +F TGDI +G +EI DR KD++K GE+IS +E AL+
Sbjct: 405 RSALTPD--G--FFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMG 456
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-12
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 17/205 (8%)
Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
G+ TY EV+ RA GL G V R A L A+ + T
Sbjct: 43 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
L + + LN + L+ D L + A+ LKT+++ + + E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE------- 155
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATA 304
++ E+ +P + + YT+G+TGLPKGV+ +H ++ +
Sbjct: 156 -----GYLAY---EEALGEEADPVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHV 329
AA DV L +P+ HV
Sbjct: 207 AASLVDGTALSEKDVVLPVVPMFHV 231
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 45/277 (16%)
Query: 61 PGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKF 120
+ + + ++ A + P D F+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFT--------FMDYEQDWD- 53
Query: 121 EKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSI 180
G T+ +++ R + A L G D R I A +E+ +AF G +
Sbjct: 54 -----GVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107
Query: 181 TVVTIY---SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237
V + + ++ L+++ ++ S + + + E D
Sbjct: 108 IAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167
Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
+ D+ + A + YTSGST P GV+++H
Sbjct: 168 DLDAP----------------------NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSH 205
Query: 298 GNIVATAAAIK-----TLIPNPGRSDVYLAYLPLAHV 329
N+ + P + +++LP H
Sbjct: 206 QNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 40/176 (22%), Positives = 54/176 (30%), Gaps = 45/176 (25%)
Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP-- 494
G I ++ G + A + +RF + A +Y L E S+ P
Sbjct: 311 GNILTILSGSERVQAATIKRFAD--RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368
Query: 495 ---------SVGRVGPPVPCCYIKLVSWDEGGYKTSD----------KPMPR---GEIVV 532
S G P L+S S P GEI V
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLIS---YMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425
Query: 533 GGFNVTAGYFNNPGKTSEVYKVDERGMC-------WFYTGDIGQVYPDGCLEIIDR 581
G NV GY+ P ++ + W TGD G V DG + II R
Sbjct: 426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%)
Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
E TY ++ A + A+ L G R +L + AF GC V IY
Sbjct: 39 ETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 189 LGEDA---LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
E + ++ ++ + +KK + + +
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT--------------------ADELNTNP 138
Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
+ +E S S N +A + YTSGST PKGVM++H N++
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN 197
Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVL 330
I T + + ++LP H +
Sbjct: 198 KIFTSF-HMNDETIIFSWLPPHHDM 221
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 39/184 (21%), Positives = 54/184 (29%), Gaps = 53/184 (28%)
Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDPSV 496
G P+ ++ + F G YGL E T
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAF--KEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346
Query: 497 -----------GRVGPPVPCC--YIKLVSWDEGGYKTSDKPMPR---------------- 527
RV KLVS S P+
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVS--------SGNPIQEVKIIDPDTLIPCDFDQ 398
Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEVY----KVDERGMCWFYTGDIGQVYPDGCLEIIDRK 582
GEI V +V GY+N P +T + K DER + TGD+G + L + R
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLHENELYVTGRI 457
Query: 583 KDIV 586
KD++
Sbjct: 458 KDLI 461
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-22
Identities = 83/402 (20%), Positives = 126/402 (31%), Gaps = 117/402 (29%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPL---AHVLELAAE 335
I++TSG+TG PKGV I+H N+++ + + + LA P V+ A
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP- 208
Query: 336 SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVRE 388
+ G TL + K D L + + P+ D
Sbjct: 209 --------TLALGGTLFA------LPKELVADFKQLFTTIAQLPVGIWTSTPSFAD---- 250
Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
A+ F + ++
Sbjct: 251 -------------------------MAMLSDDFCQAKM----------PALTHF------ 269
Query: 449 FMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF---SEWDDPSVGRV--GPP 502
G L+ + ++ A I AYG TE + + + R+ G P
Sbjct: 270 --YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327
Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE------- 550
P YI + DE G K + GEI+V G V+ GY NNP KT+E
Sbjct: 328 KPDSPTYI-I---DEDG-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKG 378
Query: 551 --VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDY 608
Y TGDIG + D L R +K G I L V L S
Sbjct: 379 QPAYH----------TGDIGSLTEDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPM 427
Query: 609 VDN--IMIHADPFHN--YCVALVVPSHKALEKWAHEASIKYE 646
V + + + H +A +V E++ E +
Sbjct: 428 VASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 79/372 (21%), Positives = 120/372 (32%), Gaps = 108/372 (29%)
Query: 259 EKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
+ + DP+ N A IMYTSG+TG PKG + TH NI + + +
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQ-- 647
Query: 318 DVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL--- 371
D +L+ A + A ++ + L + + T D L
Sbjct: 648 DTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLDTERLTDL 692
Query: 372 ----KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
+M A A+F L W
Sbjct: 693 ILQENVNVMFATTALF---------------------------NLLTDAGEDWMKG---- 721
Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGS 486
+R ++ GG S ++ + I + YG TE +
Sbjct: 722 -------------------LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762
Query: 487 TFSEWDDPSVGR----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNV 537
T D +G P+ YI L +E + P GE+ + G V
Sbjct: 763 TAHVVHDLPDSISSLPIGKPISNASVYI-L---NEQS-----QLQPFGAVGELCISGMGV 813
Query: 538 TAGYFNNPGKTSEV-----YKVDERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHG 591
+ GY N T E +K E + Y TGD+ + PDG +E R D VK+ G
Sbjct: 814 SKGYVNRADLTKEKFIENPFKPGET-L---YRTGDLARWLPDGTIEYAGRIDDQVKI-RG 868
Query: 592 EYISLGKVEAAL 603
I L ++E L
Sbjct: 869 HRIELEEIEKQL 880
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 3e-20
Identities = 80/391 (20%), Positives = 125/391 (31%), Gaps = 107/391 (27%)
Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL---AHVLELAAES 336
I+YTSGSTG PKGV IT+ +V+ V+L P V+++
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-LQTGQVFLNQAPFSFDLSVMDIYP-- 205
Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREG 389
++ G TL I K L + + P+
Sbjct: 206 -------SLVTGGTLWA------IDKDMIARPKDLFASLEQSDIQVWTSTPSFA------ 246
Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
+ L + + +++
Sbjct: 247 -------------EMC--------------------LMEASFSESMLPNMKTF------- 266
Query: 450 MICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-----PV 503
+ G L + ++ I A I YG TE T + + +
Sbjct: 267 -LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325
Query: 504 P--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE--VYKVDE 556
I + E G P GEIV+ G +V+ GY +P T + E
Sbjct: 326 SDCRLLI-M---KEDG-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 557 RGMCWFY-TGDIGQVY-PDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--- 611
R Y TGD G Y +G L R +KL HG + L ++E L + YV+
Sbjct: 377 R-A---YKTGDAG--YVENGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVI 429
Query: 612 IMIHADPFHNYCVALVVPSHKALEKWAHEAS 642
+ I ++Y +A+VVP + EK S
Sbjct: 430 VPIKKGEKYDYLLAVVVPGEHSFEKEFKLTS 460
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 5e-19
Identities = 83/412 (20%), Positives = 128/412 (31%), Gaps = 120/412 (29%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
D + I+YTSGSTG PKGV I+ N+ + I P ++L
Sbjct: 134 VSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP-VSGGKIFLNQA 191
Query: 325 PLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
P + V++L + G TL + K VL
Sbjct: 192 PFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVLFEELKKSGLN 236
Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
+ + P+ + L +
Sbjct: 237 VWTSTPSFV-------------------QMC--------------------LMDPGFSQD 257
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
+ + G L + + A I YG TE T E +
Sbjct: 258 LLPHADTF--------MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309
Query: 494 PSVGR-----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFN 543
+ R VG P +I + DE G +P+P GEIV+ G +V+ GY
Sbjct: 310 DVISRSESLPVGFAKPDMNIFI-M---DEEG-----QPLPEGEKGEIVIAGPSVSRGYLG 360
Query: 544 NPGKTSE---------VYKVDERGMCWFYTGDIGQVY-PDGCLEIIDRKKDIVKLQHGEY 593
P T + Y+ TGD G + DG + R +KL HG
Sbjct: 361 EPELTEKAFFSHEGQWAYR----------TGDAG--FIQDGQIFCQGRLDFQIKL-HGYR 407
Query: 594 ISLGKVEAALISSDYVDN--IMIHAD-PFHNYCVALVVPSHKALEKWAHEAS 642
+ L ++E + S YV + ++ + Y +A +VP EK S
Sbjct: 408 MELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTS 459
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 9e-18
Identities = 80/405 (19%), Positives = 129/405 (31%), Gaps = 139/405 (34%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
+ + S + +A ++YTSG+TG PKG M+ H I + + D +
Sbjct: 173 TNLHVPSKSTD-LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFA 230
Query: 325 PL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
+ A V E+ A+ G++L + I K T D + T
Sbjct: 231 SISFDASVWEMFM---------ALLTGASLYI------ILKDTINDFVKFEQYINQKEIT 275
Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
++ P L D
Sbjct: 276 VITLPPTYV--------------------------------------------VHL-DPE 290
Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQ-------RFINICMGAPIGQAYGLTETCAGST 487
S++ + I G+ S +IN AYG TET +T
Sbjct: 291 RILSIQTL--------ITAGSATSPSLVNKWKEKVTYIN---------AYGPTETTICAT 333
Query: 488 FSEWDDPSVGRV---GPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTA 539
++G G P+ YI + DE + GE+ +GG +
Sbjct: 334 TWVATKETIGHSVPIGAPIQNTQIYI-V---DENL-----QLKSVGEAGELCIGGEGLAR 384
Query: 540 GYFNNPGKTSE------------VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVK 587
GY+ P TS+ +YK TGD + DG +E + R + VK
Sbjct: 385 GYWKRPELTSQKFVDNPFVPGEKLYK----------TGDQARWLSDGNIEYLGRIDNQVK 434
Query: 588 LQHGEYISLGKVEAALISSDYVDN--IMIHAD-PFHNYCVALVVP 629
+ G + L +VE+ L+ Y+ + +H D Y A V
Sbjct: 435 I-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVS 478
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-13
Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 21/198 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
T+ ++ + A+ V G + ++ +++ G + V L
Sbjct: 88 TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147
Query: 192 DALIHSLNETQVTTLICDS--KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
+++ + + + ++C + +++ + I + G I
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDF 202
Query: 250 WTV-----SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
F D ++ ++SG+ G PK V + +
Sbjct: 203 RKELEESSPIFERPTGEVSTKNEDI--------CLVYFSSGTAGFPKMVEHDNTYPLGHI 254
Query: 305 AAIKTLIPNPGRSDVYLA 322
K N ++
Sbjct: 255 LTAKYWQ-NVEDDGLHYT 271
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
+++ + G PL+ + G + + +G TET W +P G +G P P
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401
Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGG-----FNVTAGYFNNPGKTSEVYKVDER 557
I+L+ D G + GEIV+ + Y +P +T E +
Sbjct: 402 YKIELM--DRDG-----RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG-- 452
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
+++TGD+ + DG L + R DI+K G + +VE+ALI V
Sbjct: 453 ---YYHTGDMAWMDEDGYLWFVGRADDIIKTS-GYKVGPFEVESALIQHPAV 500
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 6e-12
Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 52/275 (18%)
Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPL 326
P + + + G+TG PK V+ I A + + + S LA +P
Sbjct: 85 PQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPT 144
Query: 327 -AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385
H++ + L G + + + + +G V L+ V
Sbjct: 145 GPHIVGAINKERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN 203
Query: 386 VREGVVKKVEEKGGLTKNLFNI-GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
+ L R L +R + +S+ +
Sbjct: 204 QD-------------IRFLVTTPPVLRELL------------KRPEVVLQMKQSLAQI-- 236
Query: 445 GRIRFMICGGAPLSADSQRFI--NICMGAPIGQAYGLTETC--AGSTFSEWDDPSVGRVG 500
GG L+ D +FI I +YG T + S + V
Sbjct: 237 ------TLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVI-YD 289
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV 532
P +V + + RG ++V
Sbjct: 290 SFSPFITYDVVDSITA------QTVEYGERGNVIV 318
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-------GRS 317
S + + P A ++YTSGSTG PKGV ++ N+ + + A LI N G
Sbjct: 166 SDILNNYPENL-DAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224
Query: 318 DVYLAYLPL---AHVLEL 332
+L H+ E+
Sbjct: 225 GKFLCLASRAFDVHIGEM 242
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRV--GPPVP- 504
++ GG ++ +Q+ + + YG TE G + S G P+
Sbjct: 297 VYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS-DTRCIGHPLGD 355
Query: 505 -CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYKVDERGMC 560
++ L G S++ + + GE+V+ G V GY N P + M
Sbjct: 356 SVAHV-L---APG----SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRK-M- 405
Query: 561 WFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN--IMIHAD 617
Y TGDI ++ D + + RK + VK+ G+ + LG+V + S D + + +
Sbjct: 406 --YRTGDIVRMDADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLN 462
Query: 618 P---FHNYCVALVVPSHKALEKWAHEASIKYEDLSE 650
+ V+ V S A+ + Y++++
Sbjct: 463 HPGTSKQFLVSFVASSGAAVRGELRWINENYKEINN 498
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-10
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
S P + +A I ++SG+TG PK + TH I L +L
Sbjct: 155 SVARPCFAADQ-IAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL--AFAPQMRFLVNS 211
Query: 325 PLA 327
PL+
Sbjct: 212 PLS 214
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 42/207 (20%), Positives = 67/207 (32%), Gaps = 34/207 (16%)
Query: 448 RFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSE--WDDPSVGRV--GPP 502
R ++ GG LS +R + + YG TE + DD + G
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338
Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR----GEIVVGGFNVTAGYFNNPGKTSEVYKVD- 555
+ + L DE G + + GEIV G + GY N+ +T +
Sbjct: 339 IAGTAVLL-L---DEHG-----QEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELP 389
Query: 556 -----ERGMCWFY-TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYV 609
R Y TGD + G L I R VKL +G + L +E +
Sbjct: 390 YRGRLLR-A---YRTGDRARYDEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGI 444
Query: 610 DN--IMIHADPFHNYCVALVVPSHKAL 634
+ +++ + A
Sbjct: 445 LDCALLVRERNGVKQLLCAWTGKADAS 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 82/215 (38%)
Query: 543 NNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL----EIIDRKKDIVKLQHGEYISL-- 596
P + +Y +++R + D QV+ + + ++ +++L+ + + +
Sbjct: 103 RQPSMMTRMY-IEQRDRLY---ND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 597 ----GK-VEAALISSDY-VDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLSE 650
GK A + Y V M F + W ++K
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKM----DFKIF--------------WL---NLKN----- 191
Query: 651 LCNKAEAVNEVQQAL------------SKASTLVSRTE--------FFLSRRYKTTLCL- 689
CN E V E+ Q L +S + R S+ Y+ CL
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLL 248
Query: 690 ---QVAKAAKLDKFEIPAKIKLMPEPWTPEAGLVT 721
V A + F + KI L+T
Sbjct: 249 VLLNVQNAKAWNAFNLSCKI------------LLT 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 78/644 (12%), Positives = 175/644 (27%), Gaps = 188/644 (29%)
Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
H++D + F+ F + + +D L++ ++ +I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV-----QDMPKSILSKEEIDHIIMSKD 59
Query: 212 QLKKLSAVSSSLKTIKNVIY--FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP 269
+ + +L + + + F + + + +S ++ P
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQR-------QP 105
Query: 270 SLPSQNGVAVI--MYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP----------GRS 317
S+ ++ + +Y V + A+ L P G++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---- 373
++A V + + I + L + + +S +VL+
Sbjct: 165 --WVA----LDVC--LSYKVQCKMDFKIFW---LNLKNCNS--------PETVLEMLQKL 205
Query: 374 --TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
+ + D ++ + L + L + Y+ L + W
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAW 259
Query: 432 DA-------IV---FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE 481
+A ++ FK V L I LT
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-------------------TLTP 300
Query: 482 TCAGSTFSEW------DDPSVGRVGPPVPCCYI------KLVSWDEGGYKTSDKPMPRGE 529
S ++ D P P I L +WD +K +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNC-DKLTT 357
Query: 530 IVVGGFNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQ 589
I+ NV P + +++ + V+P +
Sbjct: 358 IIESSLNVL-----EPAEYRKMFD------------RLS-VFPPS-----------AHI- 387
Query: 590 HGEYISLGKVEAALISSDYVDNIMIHADPFHNYCVALVVPSHKALEKWAHEASIKYEDLS 649
I L + +I SD V ++ + H Y + +EK E++I +
Sbjct: 388 --PTILLSLIWFDVIKSD-VMVVV---NKLHKYSL---------VEKQPKESTISIPSIY 432
Query: 650 -ELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCL-----------------QV 691
EL K E + AL + ++V + + + + + + +
Sbjct: 433 LELKVKLEN----EYALHR--SIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 692 AKAAKLDKFE--------IPAKIKLMPEPWTPEAGLVTAALKIK 727
++ F + KI+ W ++ ++K
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 744 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-64 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 5e-58 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-52 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 7e-49 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-33 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-28 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-22 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 224 bits (572), Expect = 2e-64
Identities = 85/551 (15%), Positives = 169/551 (30%), Gaps = 93/551 (16%)
Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQS 179
+E + +Y E+ C FA+ L++ G AI E +A C R
Sbjct: 93 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152
Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAV-----------SSSLKTIKN 228
I+ +A+ + ++ +I + ++ ++ + ++ ++++
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212
Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288
VI + GS+ D G W + + ++ P I+YTSGSTG
Sbjct: 213 VIVLKRTGSDID--WQEGRDLWWRDLIEKASPEHQPEAMNAEDP-----LFILYTSGSTG 265
Query: 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE--SIMLCAGCAIG 346
PKGV+ T G + AA + + D+Y + V + + C +
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325
Query: 347 YGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406
+ + + V + ++ P
Sbjct: 326 FEGVPNWPTPARMCQ-----VVDKHQVNILYTAPTAI----------------------- 357
Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
R L A + R + G P++ ++ +
Sbjct: 358 ----RALMAEGDKAIEGTDRSSL------------------RILGSVGEPINPEAWEWYW 395
Query: 467 ICMG---APIGQAYGLTETCAGSTFSEWDDPSV--GRVGPPVPCCYIKLVSWDEGGYKTS 521
+G P+ + TET + G P LV D G
Sbjct: 396 KKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV--DNEG---- 449
Query: 522 DKPMP---RGEIVVGG--FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCL 576
P G +V+ F + + + Y + +++GD + DG
Sbjct: 450 -HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGYY 506
Query: 577 EIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPSHKA 633
I R D++ + G + ++E+AL++ + + I A V +H
Sbjct: 507 WITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE 565
Query: 634 LEKWAHEASIK 644
A ++
Sbjct: 566 EPSPELYAEVR 576
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 203 bits (518), Expect = 5e-58
Identities = 128/673 (19%), Positives = 205/673 (30%), Gaps = 169/673 (25%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
+ E++ + + +LH G+ TY EV+ RA
Sbjct: 12 NLWDFLERAAALFGRKEVV-------------------SRLHTGEVHRTTYAEVYQRARR 52
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
GL G V R A L A+ + T L + + LN +
Sbjct: 53 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
L+ D L + A+ LKT+++ + + E +
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------------GYLAYEEA 156
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA-AAIKTLIPNPGRSDVYL 321
DP + + YT+G+TGLPKGV+ +H +V + AA DV L
Sbjct: 157 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVL 216
Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
+P+ HV G + ++ G T A VP
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG-------VTFTAGVPT 269
Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
++ L D + R
Sbjct: 270 VW--------------------------------------------LALADYLESTGHRL 285
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP------- 494
+R ++ GG+ MG + Q YGLTET +
Sbjct: 286 ---KTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341
Query: 495 ----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
+ G P+P +++ DE G GE+ + G +T GY+ N T
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVA--DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399
Query: 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVD 610
D +F TGDI +G +EI DR KD++K GE+IS +E AL+ V
Sbjct: 400 ALTPD----GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVK 454
Query: 611 NIMIHADP---FHNYCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSK 667
+ A P + +A+VVP + E+ + L K
Sbjct: 455 EAAVVAIPHPKWQERPLAVVVPR----------------------GEKPTPEELNEHLLK 492
Query: 668 ASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIKLMPE-PWTPEAGLVTAALKI 726
A K+++P E P T+A K
Sbjct: 493 ---------------------------AGFAKWQLPDAYVFAEEIP-------RTSAGKF 518
Query: 727 KREQLKAKFKDDL 739
+ L+ ++K+
Sbjct: 519 LKRALREQYKNYY 531
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 190 bits (483), Expect = 2e-52
Identities = 87/553 (15%), Positives = 167/553 (30%), Gaps = 72/553 (13%)
Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
FE G TY E+ + C A L + G A+ E I R
Sbjct: 80 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139
Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS---LKTIKNVIYFEND 235
+++ ++L +N+ +I + + + + ++ +
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199
Query: 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
+ + + EK ++ + ++YTSGSTG PKGV
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQH 259
Query: 296 THGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTD 355
+ + A + + DV+ + + + G + +TL
Sbjct: 260 STAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI----TGHTYVVYGPLLYGCATLVFEG 315
Query: 356 TSSKIKKGTKGD-VSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
T + D + K T P R L
Sbjct: 316 TPAYPNYSRYWDIIDEHKVTQFYVAPTAL---------------------------RLLK 348
Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---A 471
S+ L+ + R + G P++A+ + + +G
Sbjct: 349 RAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEKIGKNEI 390
Query: 472 PIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
PI Y TE+ + + G P ++ D + + G
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEG 448
Query: 529 EIVVGGF--NVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIV 586
+ V + + N + + Y G +++TGD DG + I+ R D+V
Sbjct: 449 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGYIWILGRVDDVV 506
Query: 587 KLQHGEYISLGKVEAALISSDYVDN---IMIHADPFHNYCVALVVPSHKALEKWAHEASI 643
+ G +S ++EAA+I V + + D A VV +K+ A + +
Sbjct: 507 NVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 565
Query: 644 K--YEDLSELCNK 654
+ + L K
Sbjct: 566 QDIKKHLVFTVRK 578
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 178 bits (452), Expect = 7e-49
Identities = 108/557 (19%), Positives = 187/557 (33%), Gaps = 92/557 (16%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
T ++ K + + +D + TY E F+ +
Sbjct: 18 TAGEQLHKAMKRYALVP----------GTIAFTDAHIEVNI--------TYAEYFEMSVR 59
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
A + +G N + R + +E +++F+ G + V E L++S+N +Q
Sbjct: 60 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119
Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
T + K L+K+ V L I+ +I ++ G S +T +
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHLPPGFN 174
Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
+ V S +A+IM +SGSTGLPKGV + H + + I
Sbjct: 175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 234
Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382
++ G +TL ++ + + + +L
Sbjct: 235 L-------------SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD----- 276
Query: 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442
YK + A + + F + ++ +
Sbjct: 277 --------------------------YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA 310
Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
GG G + I Q YGLTET + + D G VG
Sbjct: 311 SGGAPLSKEVG--------EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362
Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYKVDERGM 559
VP K+V D G K + RGE+ V G + +GY NNP T+ + D
Sbjct: 363 VPFFEAKVVDLDTG------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD---- 412
Query: 560 CWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA--- 616
W ++GDI D I+DR K ++K G ++ ++E+ L+ + + +
Sbjct: 413 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD 471
Query: 617 DPFHNYCVALVVPSHKA 633
D A+VV H
Sbjct: 472 DDAGELPAAVVVLEHGK 488
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 133 bits (334), Expect = 1e-33
Identities = 96/576 (16%), Positives = 171/576 (29%), Gaps = 123/576 (21%)
Query: 83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
T+ + ++ P L + G + T+ E+ R +
Sbjct: 3 TVNEMLRRAATRAPDHCAL----------AVPARGLRL-----------THAELRARVEA 41
Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
A+ L G R A++A + IA R + L L + +
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
Query: 203 VTTLICD-SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
+T + +Q+ S S I + DG G
Sbjct: 102 MTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG------------------- 142
Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LIPNPGRSDVY 320
P++ A I YTSG+TGLPK +I + + T + GR +V
Sbjct: 143 ---PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380
L +PL HV+ A + A + ++ + + PT + A+
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALA 259
Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
A ++ S+R
Sbjct: 260 AAAAHAG--------------------------------------------SSLKLDSLR 275
Query: 441 AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
V GA + ++ + YG TE + + G
Sbjct: 276 HVT--------FAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPG 327
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGE----IVVGGFNVTAGYFNNPGKTSEVYKVDE 556
+++ D+ + GE IV + GY N P T+E +
Sbjct: 328 FFSEVRIVRIGGGV-------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ--- 377
Query: 557 RGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHA 616
W+ T D+ P+G + I+ R D++ GE I ++E L ++ V +++
Sbjct: 378 --DGWYRTSDVAVWTPEGTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 617 DP---FHNYCVALVVP------SHKALEKWAHEASI 643
+ A VVP S AL+ + + +
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 116 bits (291), Expect = 5e-28
Identities = 83/561 (14%), Positives = 147/561 (26%), Gaps = 101/561 (18%)
Query: 78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
W G T L + DR A + G+ W +Y E+
Sbjct: 22 WAG-ETFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57
Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
RA A+G G R + E+F FR V S + +
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 198 LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE 257
+ I K + I F
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRS------------LARQVQSKLPTLKNIIVAGEAEEFLP 165
Query: 258 VEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
+E L PV + VA + + GSTGL K + TH + + + + +
Sbjct: 166 LEDL-HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224
Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
A + + G + ++ P+
Sbjct: 225 VYLAALPMAHNY-----PLSSPGVLGVLYAGGRVVLSP----------------SPSPDD 263
Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
A P I E+ +T S ++L
Sbjct: 264 AFPLI-------------EREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL------- 303
Query: 438 SVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVG 497
+GG + + A Y + E + G
Sbjct: 304 ----QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE-----EIIVNTQG 354
Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVDER 557
+ P + WD+ KP G ++ G GY+ + +
Sbjct: 355 KPMSPYDESRV----WDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF----T 404
Query: 558 GMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMI 614
++ TGDI ++ DG + + R KD + GE ++ +VE L++ V + + +
Sbjct: 405 EDGFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSM 463
Query: 615 HADPFHNYCVALVVPSHKALE 635
++P +A +
Sbjct: 464 PDQFLGERSCVFIIPRDEAPK 484
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 98.8 bits (245), Expect = 3e-22
Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 21/214 (9%)
Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VPC 505
I+ +I G+ S AYG TET +T ++G P P
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336
Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVD--ERGMCWFY 563
++ DE GE+ +GG + GY+ P TS+ + + G +
Sbjct: 337 QNTQIYIVDENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYK 394
Query: 564 TGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDN---IMIHADPFH 620
TGD + DG +E + R + VK+ G + L +VE+ L+ Y+ +
Sbjct: 395 TGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453
Query: 621 NYCVALVVPSHKALEKWAHEASIKYEDLSELCNK 654
Y A V E I E L + ++
Sbjct: 454 PYLCAYFVS----------EKHIPLEQLRQFSSE 477
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 744 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=0 Score=617.77 Aligned_cols=518 Identities=18% Similarity=0.237 Sum_probs=414.2
Q ss_pred CCH-HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 989-9999999986899962478630464431157885100103797188749999999999999999599999997999
Q 004568 82 STM-AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 82 ~ti-~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~Gv~~gd~V~i 160 (744)
.|+ ..+++++++.+||++|+++.. +. .++.+++||+||.++++++|++|+++|+++||+|++
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~~----------~~-------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i 133 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAI 133 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEE----------CC-------CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 3199999999997499987999973----------69-------998569709999999999999999729899999999
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHH---------HHHHHHHH--CCCCCEEEE
Q ss_conf 9079587999999998369689971799998999999971383299988210---------66899741--039980099
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVS--SSLKTIKNV 229 (744)
Q Consensus 161 ~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~---------~~~~~~~~--~~~~~~~~i 229 (744)
+++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++.. ...+.... ...+.+.++
T Consensus 134 ~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (643)
T d1pg4a_ 134 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHV 213 (643)
T ss_dssp ECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEE
T ss_pred ECCCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 51544489999999998595999318889999999999855998999843144313332103447888724455664079
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHH-HH
Q ss_conf 99628998767786688778337327889871778999999999897399992589999502354201989999999-98
Q 004568 230 IYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IK 308 (744)
Q Consensus 230 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~-~~ 308 (744)
+.+........ . .......+.+.... ......+....++|+++|+|||||||.||||++||++++..... ..
T Consensus 214 i~~~~~~~~~~-----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~ 286 (643)
T d1pg4a_ 214 IVLKRTGSDID-----W-QEGRDLWWRDLIEK-ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 286 (643)
T ss_dssp EEECSSCCCCC-----C-CBTTEEEHHHHHTT-SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH
T ss_pred EEECCCCCCCC-----C-CCCCCHHHHHHHCC-CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 99646776556-----4-44420133443202-57545777799888399990887566787799832799999999999
Q ss_pred HHCCCCCCCCEEEECCCHHHHHHHHHH-HHHHHHCCEEEEC-------CCCCCCCCCHHHCCCCCCCCEEECCEEEEECH
Q ss_conf 648999999499954785889989999-9999816348768-------76423455110004755661373221885126
Q 004568 309 TLIPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG-------STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (744)
Q Consensus 309 ~~~~~~~~~d~~l~~~pl~h~~~~~~~-~~~l~~G~~iv~~-------~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P 380 (744)
..+ ++.++|++++++|++|++++... +.+|+.|+++++. ++..+.+. ++++++|++.++|
T Consensus 287 ~~~-~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P 354 (643)
T d1pg4a_ 287 YVF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV-----------VDKHQVNILYTAP 354 (643)
T ss_dssp HHT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH-----------HHHHTCSEEEECH
T ss_pred HHH-CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH-----------HHHHCCCEEEEHH
T ss_conf 961-9898878999277699888899999999858899995688887999999999-----------9997993998059
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
Q ss_conf 99999999999998861550356889999999865306655666603466889979999887169189999826999988
Q 004568 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (744)
Q Consensus 381 ~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~ 460 (744)
+++..+.+...... +....++||.+++||++++++
T Consensus 355 ~~l~~l~~~~~~~~---------------------------------------------~~~dl~sLr~i~~~G~pl~~~ 389 (643)
T d1pg4a_ 355 TAIRALMAEGDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPE 389 (643)
T ss_dssp HHHHHHHTTGGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHH
T ss_pred HHHHHHHHCCCHHC---------------------------------------------CCCCCCCEEEEEEEECCCCHH
T ss_conf 99999985751002---------------------------------------------456887637999986789999
Q ss_pred HHHHHHHHCC---CCEECCCCHHHHCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECC-
Q ss_conf 9999986409---94102448011111424557889--98786598757627999855899966789999976799856-
Q 004568 461 SQRFINICMG---APIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG- 534 (744)
Q Consensus 461 ~~~~~~~~~g---~~i~~~YG~TEt~~~~~~~~~~~--~~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g- 534 (744)
+.+++.+.++ +++.++||+||+++.++...+.. .+.+++|.|+||++++|+| +++.. +++++.|||+|+|
T Consensus 390 ~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~---~~~g~~Gel~v~~~ 465 (643)
T d1pg4a_ 390 AWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDS 465 (643)
T ss_dssp HHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSC
T ss_pred HHHHHHHHHCCCCCEEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCC---CCCCCEEEEEEECC
T ss_conf 999999985888863997263212066578248876677777663044797899998-99989---88996579999568
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEE
Q ss_conf -5423112399833200004588865038608189995799199982178908819902231178999981696744499
Q 004568 535 -FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIM 613 (744)
Q Consensus 535 -~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~ 613 (744)
|+++.|||++++.+.+.+....+ |||+|||+|++++||+++++||.||+||+ +|++|+|.|||++|.+||.|.+|+
T Consensus 466 ~p~~~~~~~~~~~~~~~~~~~~~~--g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaa 542 (643)
T d1pg4a_ 466 WPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAA 542 (643)
T ss_dssp CTTCCCEETTCHHHHHHHHHSSST--TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEE
T ss_pred CCCCCCCCCCCHHHCHHHHCCCCC--CEEECCCEEEECCCCEEEEECCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEE
T ss_conf 886555005782234321202689--85874878999899209995266418998-999998899999998499825699
Q ss_pred EEECCCCC---EEEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 98249998---499999839789999999929997887888338999999999997101223200222200000234499
Q 004568 614 IHADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQ 690 (744)
Q Consensus 614 V~g~~~~~---~~~A~vv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (744)
|+|.++.. .++|+|+++++. ..+ . ++.++|++
T Consensus 543 Vvg~~d~~~ge~~~a~Vv~~~~~----------~~~--------~----~~~~~i~~----------------------- 577 (643)
T d1pg4a_ 543 VVGIPHAIKGQAIYAYVTLNHGE----------EPS--------P----ELYAEVRN----------------------- 577 (643)
T ss_dssp EEEEEETTTEEEEEEEEEECTTC----------CCC--------H----HHHHHHHH-----------------------
T ss_pred EEEEECCCCCEEEEEEEEECCCC----------CCC--------H----HHHHHHHH-----------------------
T ss_conf 99888799985999999978999----------999--------8----89999999-----------------------
Q ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8986499985210079972599999989535432338389999999999
Q 004568 691 VAKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDL 739 (744)
Q Consensus 691 ~~~~~~l~~~~~p~~v~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i 739 (744)
+++ .+|++|++|+.|++++++ | +|++||++|++|++++..+.
T Consensus 578 ~~~-~~L~~~~vP~~i~~v~~l--P----~T~sGKi~R~~Lr~~~~~~~ 619 (643)
T d1pg4a_ 578 WVR-KEIGPLATPDVLHWTDSL--P----KTRSGKIMRRILRKIAAGDT 619 (643)
T ss_dssp HHH-HHTCGGGCCSEEEECSCC--C----BCTTSCBCHHHHHHHHHTC-
T ss_pred HHH-HHCCCCCCCCEEEEECCC--C----CCCCCCCCHHHHHHHHCCCC
T ss_conf 998-538866686489997988--8----79986822899998753784
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=612.06 Aligned_cols=532 Identities=17% Similarity=0.192 Sum_probs=415.5
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q ss_conf 9899999999986899962478630464431157885100103797188749999999999999999-599999997999
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI 160 (744)
Q Consensus 82 ~ti~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~-~~Gv~~gd~V~i 160 (744)
+..+.+++++++++||++|+++.. +. .++.+++||+||.++++++|++|+ ++|+++||+|++
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~~----------~~-------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i 121 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFEG----------DE-------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV 121 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEEC----------SS-------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE----------CC-------CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 399999999996298987999983----------58-------9972687499999999999999898339899899999
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHH---------HHHHHHHHCCCCCEEEEEE
Q ss_conf 9079587999999998369689971799998999999971383299988210---------6689974103998009999
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIY 231 (744)
Q Consensus 161 ~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~ii~ 231 (744)
+++|+++++++++||+++|++++|+++.++++++.++++++++++++++... ...+.........+.....
T Consensus 122 ~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (640)
T d1ry2a_ 122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 201 (640)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 94898999999987501862860677889999999999755123321210011002014567777766543024210000
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHH-H
Q ss_conf 628998767786688778337327889871778999999999897399992589999502354201989999999986-4
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-L 310 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~~~~-~ 310 (744)
.......... . .......+..... .........+..++|+++|+|||||||.||||+++|++++........ .
T Consensus 202 ~~~~~~~~~~----~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~ 275 (640)
T d1ry2a_ 202 YRKTNNPSVA----F-HAPRDLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 275 (640)
T ss_dssp ECSSCCSSCC----C-CSSSEEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCC----C-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 0135543333----3-4542110000133-44322235776545577899799888999612345654778888888763
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHH-HHHHHHCCEEEEC-------CCCCCCCCCHHHCCCCCCCCEEECCEEEEECHHH
Q ss_conf 8999999499954785889989999-9999816348768-------7642345511000475566137322188512699
Q 004568 311 IPNPGRSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGYG-------STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382 (744)
Q Consensus 311 ~~~~~~~d~~l~~~pl~h~~~~~~~-~~~l~~G~~iv~~-------~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P~~ 382 (744)
+ .+.++|++++++|++|+.+.... +.+|..|+++++. ++..+.+. ++++++|++.++|++
T Consensus 276 ~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~ 343 (640)
T d1ry2a_ 276 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI-----------IDEHKVTQFYVAPTA 343 (640)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH-----------HHHTTCSEEEECHHH
T ss_pred C-CCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHH-----------HHHHCCCEEECCHHH
T ss_conf 2-8983430000156033546899999999719889995588777999999999-----------997086289717289
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH
Q ss_conf 99999999999886155035688999999986530665566660346688997999988716918999982699998899
Q 004568 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462 (744)
Q Consensus 383 l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~ 462 (744)
+..+.+...... .....++||.+++||+++++++.
T Consensus 344 ~~~l~~~~~~~~---------------------------------------------~~~~l~sLr~v~~gG~~l~~~~~ 378 (640)
T d1ry2a_ 344 LRLLKRAGDSYI---------------------------------------------ENHSLKSLRCLGSVGEPIAAEVW 378 (640)
T ss_dssp HHHHTTSCTTSS---------------------------------------------SSCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHCCCCCC---------------------------------------------CCCCCCCEEEEEEECCCCCHHHH
T ss_conf 999985641112---------------------------------------------33788735899994345768999
Q ss_pred HHHHHHCC---CCEECCCCHHHHCCCCCCCCCCC---CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECC--
Q ss_conf 99986409---94102448011111424557889---98786598757627999855899966789999976799856--
Q 004568 463 RFINICMG---APIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-- 534 (744)
Q Consensus 463 ~~~~~~~g---~~i~~~YG~TEt~~~~~~~~~~~---~~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g-- 534 (744)
+++.+.+| .+++++||+||++..+....... .+.+++|.|+|+++++|+|++++... .+.+..|||++++
T Consensus 379 ~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~--~~~~~~Gel~i~~~~ 456 (640)
T d1ry2a_ 379 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL--NTSHAEGVLAVKAAW 456 (640)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCE--ECSSCEEEEEESSCC
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC--CCCCCEEEEEEEECC
T ss_conf 999986088764178520022245422235677767777764432557865899837998525--787724899997057
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEE
Q ss_conf 54231123998332000045888650386081899957991999821789088199022311789999816967444999
Q 004568 535 FNVTAGYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMI 614 (744)
Q Consensus 535 ~~v~~gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V 614 (744)
|+++.|||++++.|.+.|.. +..|||+|||+|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|
T Consensus 457 p~~~~gy~~~~e~t~~~~~~--~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~V 533 (640)
T d1ry2a_ 457 PSFARTIWKNHDRYLDTYLN--PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAV 533 (640)
T ss_dssp TTSCCEETTCHHHHHHHHTS--SSTTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHCC--CCCCEEECCCCEEECCCCCEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEE
T ss_conf 87546614697787864136--89976774982049999878998747788999-9999988999999984998327999
Q ss_pred EECCCCC---EEEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 8249998---4999998397899999999299978878883389999999999971012232002222000002344998
Q 004568 615 HADPFHN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQV 691 (744)
Q Consensus 615 ~g~~~~~---~~~A~vv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (744)
+|.+++. .++|+|++.++.....+ ..+..+++.+.|.+ +
T Consensus 534 vg~~d~~~ge~~~a~Vv~~~~~~~~~~---------------~~~~~~~l~~~l~~-----------------------~ 575 (640)
T d1ry2a_ 534 VGFNDDLTGQAVAAFVVLKNKSSWSTA---------------TDDELQDIKKHLVF-----------------------T 575 (640)
T ss_dssp ECCCCCTTSCCCEEEEEEC---------------------------CCSHHHHHHH-----------------------H
T ss_pred EEEECCCCCEEEEEEEEECCCCCCCCC---------------CHHHHHHHHHHHHH-----------------------H
T ss_conf 988879898489999997378876633---------------15789999999999-----------------------9
Q ss_pred HHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9864999852100799725999999895354323383899999999999531
Q 004568 692 AKAAKLDKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQMLY 743 (744)
Q Consensus 692 ~~~~~l~~~~~p~~v~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~~~Y 743 (744)
++ .+|++|++|+.|++++++ | +|++||++|++||++++.+.++++
T Consensus 576 ~~-~~L~~~~~P~~i~~v~~l--P----~T~sGKi~R~~Lr~~~~~~~~~~~ 620 (640)
T d1ry2a_ 576 VR-KDIGPFAAPKLIILVDDL--P----KTRSGKIMRRILRKILAGESDQLG 620 (640)
T ss_dssp HH-HHTCTTTSCSEEEECSCC--C----BCTTSCBCHHHHHHSCC-------
T ss_pred HH-HHCCCCCCCEEEEEECCC--C----CCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 98-548887786099996988--8----899857229999999848765457
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=598.53 Aligned_cols=505 Identities=24% Similarity=0.337 Sum_probs=416.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 68999989999999998689996247863046443115788510010379718874999999999999999959999999
Q 004568 77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT 156 (744)
Q Consensus 77 ~~~~~~ti~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~Gv~~gd 156 (744)
..+...|++++|+++++++||++|+++.+ .|+++++||+||.++++++|++|.++|+++||
T Consensus 6 ~~~~~~~l~~~l~~~a~~~pd~~av~~~~-------------------~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd 66 (534)
T d1v25a_ 6 MMDEELNLWDFLERAAALFGRKEVVSRLH-------------------TGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66 (534)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECT-------------------TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEC-------------------CCCEEEECHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 47899889999999999759972999906-------------------99368972999999999999999977968879
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 79999079587999999998369689971799998999999971383299988210668997410399800999962899
Q 004568 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 157 ~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
+|+++++|+++|+++++||+++|++++|+++.++.+++.++|+.++++.++++.........+....+.+..++......
T Consensus 67 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (534)
T d1v25a_ 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA 146 (534)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99999089899999999999849299950999999999999974103332355201124777750256542257750353
Q ss_pred CCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHC-CCCC
Q ss_conf 876778668877833732788987177899999999989739999258999950235420198999999998648-9999
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG 315 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~~~~~~-~~~~ 315 (744)
... ....... ...........++++++++|||||||.||+|+++|++++.......... ....
T Consensus 147 ~~~------------~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~ 210 (534)
T d1v25a_ 147 PEG------------YLAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 210 (534)
T ss_dssp CTT------------CEEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCC
T ss_pred CCC------------CCCCCCC----CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 100------------0000112----344555334356771799974378888652102244166531100000023544
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCEEEECC----CCCCCCCCHHHCCCCCCCCEEECCEEEEECHHHHHHHHHHHH
Q ss_conf 9949995478588998999999998163487687----642345511000475566137322188512699999999999
Q 004568 316 RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 316 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~iv~~~----p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P~~l~~l~~~~~ 391 (744)
..|++++.+|++|.+++...+..+..|+++++.. +..+... +.++++|.+.++|.++..+.....
T Consensus 211 ~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-----------~~~~~vt~~~~~p~~~~~~~~~~~ 279 (534)
T d1v25a_ 211 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLE 279 (534)
T ss_dssp TTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEEEECCEEEECCCCCCCCCCCHH-----------HHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 466343236424414310000001203125621433331000001-----------121244433467156666665420
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99886155035688999999986530665566660346688997999988716918999982699998899999864099
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
.. ....++||.+++||++++++..++++. ++.
T Consensus 280 ~~-----------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~ 311 (534)
T d1v25a_ 280 ST-----------------------------------------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGV 311 (534)
T ss_dssp HH-----------------------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTC
T ss_pred CC-----------------------------------------------CCCCCCEEEEEEECCCCCHHHHHHHHH-HCC
T ss_conf 24-----------------------------------------------455443149999468788789999998-498
Q ss_pred CEECCCCHHHHCCCCCCCCCCCC-----------CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 41024480111114245578899-----------8786598757627999855899966789999976799856542311
Q 004568 472 PIGQAYGLTETCAGSTFSEWDDP-----------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG 540 (744)
Q Consensus 472 ~i~~~YG~TEt~~~~~~~~~~~~-----------~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~g 540 (744)
++.++||+||++..++....... ..+++|+|+||++++|+| +++...+ ...++.|||+|+|++++.|
T Consensus 312 ~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~g 389 (534)
T d1v25a_ 312 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGG 389 (534)
T ss_dssp EEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSS
T ss_pred EEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEC-CCCCCCC-CCCCEEEEEEECCCCCCCE
T ss_conf 2365036543356122034676555667311356666400013783899999-9999977-8998068999757864661
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 23998332000045888650386081899957991999821789088199022311789999816967444999824999
Q 004568 541 YFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFH 620 (744)
Q Consensus 541 Y~~~~~~t~~~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~ 620 (744)
|+++++.|.+.|. .| |||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++
T Consensus 390 Y~~~~~~t~~~~~--~d--g~~~TGDlg~~~~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~ 464 (534)
T d1v25a_ 390 YYGNEEATRSALT--PD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHP 464 (534)
T ss_dssp CBTCHHHHHTTBC--TT--SCEEEEEEEEECTTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECS
T ss_pred ECCCHHHHHHHCC--CC--CCCCCCCEEEECCCCCEEEECCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 2488255123053--68--98756966489899148991365647998-9999988999999981998146999999879
Q ss_pred C---EEEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 8---4999998397899999999299978878883389999999999971012232002222000002344998986499
Q 004568 621 N---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKL 697 (744)
Q Consensus 621 ~---~~~A~vv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 697 (744)
. .++|+|+++.+.. .. +++.+ .+++ .+|
T Consensus 465 ~~~~~l~a~vv~~~~~~----------------------~~----~~~~~----------------------~~~~-~~l 495 (534)
T d1v25a_ 465 KWQERPLAVVVPRGEKP----------------------TP----EELNE----------------------HLLK-AGF 495 (534)
T ss_dssp SSSEEEEECC--------------------------------------------------------------------CC
T ss_pred CCCEEEEEEEEECCCCC----------------------CH----HHHHH----------------------HHHH-HCC
T ss_conf 99969999999689999----------------------98----99999----------------------9998-369
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9852100799725999999895354323383899999999
Q 004568 698 DKFEIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKD 737 (744)
Q Consensus 698 ~~~~~p~~v~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~ 737 (744)
+.|++|..|++++++ | +|++|||+|++||++|++
T Consensus 496 ~~~~~P~~i~~~~~l--P----~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 496 AKWQLPDAYVFAEEI--P----RTSAGKFLKRALREQYKN 529 (534)
T ss_dssp CTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred CCCCCCCEEEEECCC--C----CCCCCCCCHHHHHHHHHH
T ss_conf 967786389997987--8----798856429999999976
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=0 Score=586.73 Aligned_cols=510 Identities=22% Similarity=0.291 Sum_probs=417.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCC---CCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCC
Q ss_conf 346899998999999999868999---62478630464431157885100103797188749999999999999999599
Q 004568 75 EVPWKGASTMAALFEQSCKSHPQD---RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151 (744)
Q Consensus 75 ~~~~~~~~ti~~~~~~~a~~~pd~---~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~G 151 (744)
..|++. .|+.++|.+.+++++++ +|+.+ + +..+.+||+||.+++.++|++|.++|
T Consensus 11 ~~p~~~-~t~~~~l~~~~~~~~~~P~~~a~~d-------------~--------~~~~~lTy~el~~~~~~lA~~L~~~G 68 (541)
T d1lcia_ 11 FYPLED-GTAGEQLHKAMKRYALVPGTIAFTD-------------A--------HIEVNITYAEYFEMSVRLAEAMKRYG 68 (541)
T ss_dssp SSCCCS-SCHHHHHHHHHHHHHTSTTCEEEEE-------------T--------TTCCEEEHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC-CCHHHHHHHHHHHHCCCCCEEEEEE-------------C--------CCCEEEEHHHHHHHHHHHHHHHHHCC
T ss_conf 899899-9999999999996177998499992-------------8--------99918529999999999999999759
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 99999799990795879999999983696899717999989999999713832999882106689974103998009999
Q 004568 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIY 231 (744)
Q Consensus 152 v~~gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ii~ 231 (744)
+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++|+.++++++|+++.....+.++...++..+.+++
T Consensus 69 i~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T d1lcia_ 69 LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIII 148 (541)
T ss_dssp CCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHCCCCCCCCCEEEE
T ss_conf 59979999990897999999999998590999549888999999999742660886421333221000123223320354
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEHHHHHHCCC------CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHH
Q ss_conf 62899876778668877833732788987177------899999999989739999258999950235420198999999
Q 004568 232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGK------RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305 (744)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~ 305 (744)
++...... .+.++.+...... ....+.....++++++|+|||||||.||+|++||++++....
T Consensus 149 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~ 217 (541)
T d1lcia_ 149 MDSKTDYQ-----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 217 (541)
T ss_dssp TTCSSCBT-----------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHH
T ss_pred ECCCCCCC-----------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 05776543-----------3101455555312543322234764458877637997403554333221112211666656
Q ss_pred HHHHHC--CCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEC---CCCCCCCCCHHHCCCCCCCCEEECCEEEEECH
Q ss_conf 998648--9999994999547858899899999999816348768---76423455110004755661373221885126
Q 004568 306 AIKTLI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380 (744)
Q Consensus 306 ~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~iv~~---~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P 380 (744)
...... ..+.+++++++++|++|.++....+..+..++.++.. ++...... +..+++|.+..+|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p 286 (541)
T d1lcia_ 218 HARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVP 286 (541)
T ss_dssp HHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEECCH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-----------HHHHHCCCCCCCC
T ss_conf 66530223334433322221222222222222222222222222222223116778-----------7652012233576
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
Q ss_conf 99999999999998861550356889999999865306655666603466889979999887169189999826999988
Q 004568 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD 460 (744)
Q Consensus 381 ~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~ 460 (744)
.++..+...... .....++++.+++||++++++
T Consensus 287 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~l~~v~~gG~~~~~~ 319 (541)
T d1lcia_ 287 TLFSFFAKSTLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKE 319 (541)
T ss_dssp HHHHHHHHCSCG-----------------------------------------------GGSCCTTCCEEECTTCCCCHH
T ss_pred CCCCCCCCCCCC-----------------------------------------------CCCCCCCCEEEEECCCCCCCC
T ss_conf 421122234421-----------------------------------------------001355221788645534454
Q ss_pred HHHHHHHHCCC-CEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 99999864099-41024480111114245578899878659875762799985589996678999997679985654231
Q 004568 461 SQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA 539 (744)
Q Consensus 461 ~~~~~~~~~g~-~i~~~YG~TEt~~~~~~~~~~~~~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~ 539 (744)
..+.+...++. .+.++||+||+++.++.........+++|+|+|+++++|+|++++.. +++|+.|||+|+|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~---~~~g~~Gel~v~g~~~~~ 396 (541)
T d1lcia_ 320 VGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMS 396 (541)
T ss_dssp HHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCS
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCC---CCCCCEEEEEECCCCCCC
T ss_conf 32111124677526635776524753886675568777631055897799997999959---999984799991386377
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 12399833200004588865038608189995799199982178908819902231178999981696744499982499
Q 004568 540 GYFNNPGKTSEVYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPF 619 (744)
Q Consensus 540 gY~~~~~~t~~~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~ 619 (744)
||+++++.+...+. .+ +||+|||+|++++||.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++
T Consensus 397 gY~~~~~~~~~~~~--~~--~~~~TGDl~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~ 471 (541)
T d1lcia_ 397 GYVNNPEATNALID--KD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPD 471 (541)
T ss_dssp EETTBHHHHHHHBC--TT--SCEEEEEEEEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EECCCHHHHHHCCC--CC--CCCCCCCEEEECCCEEEEEEEEECCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 66789666221004--77--54347995178688179993213488999-999998999999998199802799999987
Q ss_pred CC---EEEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 98---499999839789999999929997887888338999999999997101223200222200000234499898649
Q 004568 620 HN---YCVALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAK 696 (744)
Q Consensus 620 ~~---~~~A~vv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (744)
.. .++|+|++.++. +.+ . ++|.+ +++ ++
T Consensus 472 ~~~g~~~~a~v~~~~~~----------~~~-----------~----~~l~~-----------------------~~~-~~ 502 (541)
T d1lcia_ 472 DDAGELPAAVVVLEHGK----------TMT-----------E----KEIVD-----------------------YVA-SQ 502 (541)
T ss_dssp TTTEEEEEEEEEECTTC----------CCC-----------H----HHHHH-----------------------HHH-HH
T ss_pred CCCCEEEEEEEEECCCC----------CCC-----------H----HHHHH-----------------------HHH-HH
T ss_conf 99997999999978999----------999-----------9----99999-----------------------998-75
Q ss_pred CCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9985-21007997259999998953543233838999999999
Q 004568 697 LDKF-EIPAKIKLMPEPWTPEAGLVTAALKIKREQLKAKFKDD 738 (744)
Q Consensus 697 l~~~-~~p~~v~~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~ 738 (744)
|+.+ ++|..+++++++ | +|++||++|++|++++.++
T Consensus 503 l~~~~~~p~~i~~v~~l--P----~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 503 VTTAKKLRGGVVFVDEV--P----KGLTGKLDARKIREILIKA 539 (541)
T ss_dssp SCGGGSCTTEEEEESSC--C----C-----CCHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCC--C----CCCCCCCCHHHHHHHHHHH
T ss_conf 77645697189994987--8----6988675499999999971
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=0 Score=558.67 Aligned_cols=488 Identities=21% Similarity=0.276 Sum_probs=401.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf 53346899998999999999868999624786304644311578851001037971887499999999999999995999
Q 004568 73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH 152 (744)
Q Consensus 73 ~~~~~~~~~~ti~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~Gv 152 (744)
....++|...||.++|+++|+++||++|+++ +++ .+||+||.++++++|++|.++|+
T Consensus 14 ~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv 70 (514)
T d1amua_ 14 NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGI 70 (514)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE------------CCE-----------EECHHHHHHHHHHHHHHHHHCCC
T ss_conf 8888899999699999999984899739998------------994-----------68199999999999999997496
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 99997999907958799999999836968997179999899999997138329998821066899741039980099996
Q 004568 153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYF 232 (744)
Q Consensus 153 ~~gd~V~i~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ii~~ 232 (744)
++||+|+++++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++......+...... ......
T Consensus 71 ~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~~~~~~ 146 (514)
T d1amua_ 71 GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----GQVEIF 146 (514)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----SEEEEC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCC----CCCCCC
T ss_conf 8849999993898999999999998696999868889999999877434874999830245555431022----222222
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf 28998767786688778337327889871778999999999897399992589999502354201989999999986489
Q 004568 233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312 (744)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~~~~~~~ 312 (744)
... ............+..++++++|+|||||||.||+|++||.++..........+
T Consensus 147 ~~~-----------------------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~- 202 (514)
T d1amua_ 147 EED-----------------------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL- 202 (514)
T ss_dssp CCS-----------------------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-
T ss_pred CCC-----------------------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 221-----------------------22224566677899856616999736888775322222222222222222222-
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHCCCCCCCCEEECCEEEEECHHHHHHHHHHHHH
Q ss_conf 99999499954785889989999999981634876876423455110004755661373221885126999999999999
Q 004568 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK 392 (744)
Q Consensus 313 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~iv~~~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P~~l~~l~~~~~~ 392 (744)
.....|+++.++|++|..++...+.++..|+++++..+....+... ....+....++.+..+|.......
T Consensus 203 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----- 272 (514)
T d1amua_ 203 NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK-----FEQYINQKEITVITLPPTYVVHLD----- 272 (514)
T ss_dssp CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH-----HHHHHHHTTCCEEEECHHHHTTSC-----
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-----HHHHHHHHHCCCCCCEEEECCCCC-----
T ss_conf 2223454421000232244321001022111001234433330455-----556666531221111011011222-----
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 98861550356889999999865306655666603466889979999887169189999826999988999998640994
Q 004568 393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472 (744)
Q Consensus 393 ~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~~ 472 (744)
.....+++.+++||+++++++.+++.. ++.
T Consensus 273 ------------------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~ 302 (514)
T d1amua_ 273 ------------------------------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVT 302 (514)
T ss_dssp ------------------------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSE
T ss_pred ------------------------------------------------CCCCCCCCEEEEECCCCCHHHHHHHCC--CEE
T ss_conf ------------------------------------------------124554538998214589788543135--516
Q ss_pred EECCCCHHHHCCCCCCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 1024480111114245578899---8786598757627999855899966789999976799856542311239983320
Q 004568 473 IGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549 (744)
Q Consensus 473 i~~~YG~TEt~~~~~~~~~~~~---~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~ 549 (744)
++++||+||++.+++....... ..++.|.+.++..+.+.| +++.. +++|+.|||+|+||+++.||+++++.+.
T Consensus 303 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~---~~~g~~GEl~v~~~~~~~gY~~~~~~~~ 378 (514)
T d1amua_ 303 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL---KSVGEAGELCIGGEGLARGYWKRPELTS 378 (514)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC-CCCEE---CCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 9974125667335541135655557666666402333576511-46335---6999725999725854464203544550
Q ss_pred CCCCCC--CCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEEEECCCCC---EEE
Q ss_conf 000458--886503860818999579919998217890881990223117899998169674449998249998---499
Q 004568 550 EVYKVD--ERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCV 624 (744)
Q Consensus 550 ~~f~~~--~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~ 624 (744)
+.|..+ .++++||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.. .++
T Consensus 379 ~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~ 457 (514)
T d1amua_ 379 QKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC 457 (514)
T ss_dssp HHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCCCCEEEECCEEEECCCCCEEEEECCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE
T ss_conf 02675135688836897787899899849999426687998-99999999999999719982689999888788987999
Q ss_pred EEEECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99983978999999992999788788833899999999999710122320022220000023449989864999852100
Q 004568 625 ALVVPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPA 704 (744)
Q Consensus 625 A~vv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~ 704 (744)
|+|+++++. + . ++|++ +++ .+|+.|++|.
T Consensus 458 a~v~~~~~~------------~-----------~----~~l~~-----------------------~~~-~~l~~~~~p~ 486 (514)
T d1amua_ 458 AYFVSEKHI------------P-----------L----EQLRQ-----------------------FSS-EELPTYMIPS 486 (514)
T ss_dssp EEEEESSCC------------C-----------H----HHHHH-----------------------HHH-HHSCGGGSCS
T ss_pred EEEECCCCC------------C-----------H----HHHHH-----------------------HHH-HHCCCCCCCE
T ss_conf 999828999------------9-----------9----99999-----------------------998-4387565860
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 79972599999989535432338389999
Q 004568 705 KIKLMPEPWTPEAGLVTAALKIKREQLKA 733 (744)
Q Consensus 705 ~v~~~~~~~~p~~~~~t~~gKi~R~~l~~ 733 (744)
.|++++++ | +|++||++|++|++
T Consensus 487 ~i~~v~~l--P----~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 487 YFIQLDKM--P----LTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEECSSC--C----BCTTSSBCGGGSCC
T ss_pred EEEEECCC--C----CCCCCCHHHHHCCC
T ss_conf 99996987--8----79885740786079
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=548.22 Aligned_cols=496 Identities=21% Similarity=0.276 Sum_probs=401.0
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 98999999999868999624786304644311578851001037971887499999999999999995999999979999
Q 004568 82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161 (744)
Q Consensus 82 ~ti~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~Gv~~gd~V~i~ 161 (744)
.|+.++|+++|+++||++|+.+ ++ +.+||+||.++++++|++|.++|+++||+|+++
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~ 81 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ 81 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHHCCCCEEEEE------------CC-----------EEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9799999999987799759998------------99-----------768499999999999999997596886999999
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHH-----HHHHHHCCCCCEEEEEEECCCC
Q ss_conf 07958799999999836968997179999899999997138329998821066-----8997410399800999962899
Q 004568 162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDG 236 (744)
Q Consensus 162 ~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~ii~~~~~~ 236 (744)
++|+++|+++++||+++|++++|+++.++.+++.++|++++++.+++++.... .........+.+...+......
T Consensus 82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (536)
T d1mdba_ 82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE 161 (536)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred ECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 38979999999999985949995598789999999997410136732420012222233322101002333202320222
Q ss_pred CCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87677866887783373278898717789999999998973999925899995023542019899999999864899999
Q 004568 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316 (744)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~~~~~~~~~~~ 316 (744)
....+++. ...+.......++|+++|+|||||||.||+|++||+++.+.+......+ .+.+
T Consensus 162 --------------~~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~ 222 (536)
T d1mdba_ 162 --------------EFLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (536)
T ss_dssp --------------TSEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred --------------CCCCHHHC----CCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCCC
T ss_conf --------------34522220----3577678766754467764124663110001012222222222222222-2344
Q ss_pred CCEEEECCCHHHHHHHHHHH-H-HHHHCCEEEE---CCCCCCCCCCHHHCCCCCCCCEEECCEEEEECHHHHHHHHHHHH
Q ss_conf 94999547858899899999-9-9981634876---87642345511000475566137322188512699999999999
Q 004568 317 SDVYLAYLPLAHVLELAAES-I-MLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 317 ~d~~l~~~pl~h~~~~~~~~-~-~l~~G~~iv~---~~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P~~l~~l~~~~~ 391 (744)
+|++++.+|+.|.+++...+ . .+..|.+++. +++..+... +++++++.+..+|..+..+.....
T Consensus 223 ~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 291 (536)
T d1mdba_ 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (536)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHH-----------HHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 333222223332222000112231235542235688998999999-----------765202332222114666543013
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99886155035688999999986530665566660346688997999988716918999982699998899999864099
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
.. ....++++.+++||+++++...+++...++.
T Consensus 292 ~~-----------------------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 324 (536)
T d1mdba_ 292 SR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (536)
T ss_dssp HC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred CC-----------------------------------------------CCCCCCCEEEEEECCCCCCCCCCCHHHCCCC
T ss_conf 33-----------------------------------------------2256755059984133344432101212573
Q ss_pred CEECCCCHHHHCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 41024480111114245578-89987865987576279998558999667899999767998565423112399833200
Q 004568 472 PIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550 (744)
Q Consensus 472 ~i~~~YG~TEt~~~~~~~~~-~~~~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g~~v~~gY~~~~~~t~~ 550 (744)
.....|+.+|.+........ .....+++|.|+++....+++.+++.. +++++.|||+++|+.++.||+++++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~---~~~~~~Gel~v~g~~~~~gY~~~~~~~~~ 401 (536)
T d1mdba_ 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAA 401 (536)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE---ECCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 221023433211233211211234567755677786247997698976---03422431413788643320023323311
Q ss_pred CCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEEEECCCCC---EEEEEE
Q ss_conf 00458886503860818999579919998217890881990223117899998169674449998249998---499999
Q 004568 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALV 627 (744)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~v 627 (744)
.+. .+ +||+|||++++++||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++|+|
T Consensus 402 ~~~--~~--~~~~tGD~~~~~~dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v 476 (536)
T d1mdba_ 402 SFT--ED--GFYRTGDIVRLTRDGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476 (536)
T ss_dssp HBC--TT--SCEEEEEEEEECTTSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred CCC--CC--CCCCCCCCCCCCCCCCEECCCCCCEEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf 223--56--75335752110699866647875508998-99999889999999839982579999988688985999999
Q ss_pred ECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 83978999999992999788788833899999999999710122320022220000023449989864999852100799
Q 004568 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIK 707 (744)
Q Consensus 628 v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~ 707 (744)
++.++. .+ . ++|++ ++++..|+.|++|+.|+
T Consensus 477 ~~~~~~-----------~~-----------~----~~l~~-----------------------~l~~~~l~~~~~P~~i~ 507 (536)
T d1mdba_ 477 IPRDEA-----------PK-----------A----AELKA-----------------------FLRERGLAAYKIPDRVE 507 (536)
T ss_dssp EESSSC-----------CC-----------H----HHHHH-----------------------HHHHTTCCGGGSCSEEE
T ss_pred EECCCC-----------CC-----------H----HHHHH-----------------------HHHHCCCCCCCCCCEEE
T ss_conf 979999-----------99-----------9----99999-----------------------99736998675855899
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 725999999895354323383899999999999
Q 004568 708 LMPEPWTPEAGLVTAALKIKREQLKAKFKDDLQ 740 (744)
Q Consensus 708 ~~~~~~~p~~~~~t~~gKi~R~~l~~~~~~~i~ 740 (744)
+++++ | +|++|||+|++|++.|+++|.
T Consensus 508 ~v~~l--P----~t~~GKi~r~~L~~~~~~~l~ 534 (536)
T d1mdba_ 508 FVESF--P----QTGVGKVSKKALREAISEKLL 534 (536)
T ss_dssp ECSSC--C----BCTTSCBCHHHHHHHHHHHHH
T ss_pred EECCC--C----CCCCCCCCHHHHHHHHHHHHH
T ss_conf 98987--8----698867529999999998872
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=0 Score=519.03 Aligned_cols=489 Identities=20% Similarity=0.255 Sum_probs=389.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 99899999999986899962478630464431157885100103797188749999999999999999599999997999
Q 004568 81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI 160 (744)
Q Consensus 81 ~~ti~~~~~~~a~~~pd~~al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~TY~el~~~a~~lA~~L~~~Gv~~gd~V~i 160 (744)
++|++++|+++|+++||++|+.+.+ ++ +++||+||.++++++|++|.++|+++||+|++
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i 59 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECC----------CC-----------CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9888999999998689976999899----------99-----------38719999999999999999769699799999
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
Q ss_conf 90795879999999983696899717999989999999713832999882106689974103998009999628998767
Q 004568 161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD 240 (744)
Q Consensus 161 ~~~~~~e~vva~lA~~~~G~~~vpl~~~~~~~~l~~~L~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 240 (744)
+++|+++|++++|||+++|++++|+++.++++++.++++++++++++++....... ...... ....++.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~-~~~~~~-~~~~~i~--------- 128 (503)
T d3cw9a1 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD-AIFQSG-SGARIIF--------- 128 (503)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH-HHHHTT-CCCEEEE---------
T ss_pred EECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHHC-CCCCCCC---------
T ss_conf 93898999999999998595999758999999999999725875799513067777-876531-4443221---------
Q ss_pred CCCCCCCCCCEEEEHHHHHHCC----CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHC-CCCC
Q ss_conf 7866887783373278898717----7899999999989739999258999950235420198999999998648-9999
Q 004568 241 SGVSGGISNWTVSSFSEVEKLG----KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG 315 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~i~~~~~~~~~~~-~~~~ 315 (744)
+.++.... ...+.......++++++++|||||||.||+|+++|+++.+.+......+ ....
T Consensus 129 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~ 194 (503)
T d3cw9a1 129 --------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG 194 (503)
T ss_dssp --------------HHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSS
T ss_pred --------------CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf --------------000111100122477544532111333443112244434344311221123332220232322222
Q ss_pred CCCEEEECCCHHHHHHHHHH-HHHHHHCCEEEE---CCCCCCCCCCHHHCCCCCCCCEEECCEEEEECHHHHHHHHHHHH
Q ss_conf 99499954785889989999-999981634876---87642345511000475566137322188512699999999999
Q 004568 316 RSDVYLAYLPLAHVLELAAE-SIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391 (744)
Q Consensus 316 ~~d~~l~~~pl~h~~~~~~~-~~~l~~G~~iv~---~~p~~l~~~~~~~~~~~~~~i~~~k~T~l~~~P~~l~~l~~~~~ 391 (744)
..++++..+|+.|.++.... +.+...++.+++ .++..+... +..++++.+..+|..+..+.....
T Consensus 195 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~ 263 (503)
T d3cw9a1 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAAAA 263 (503)
T ss_dssp TTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----------HHHCEEECCCCCCCCCCCCCCCCC
T ss_conf 222223457642222223222222122343234665685775431-----------111000001122222222124443
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99886155035688999999986530665566660346688997999988716918999982699998899999864099
Q 004568 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA 471 (744)
Q Consensus 392 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~g~ 471 (744)
.... ....++||.+++||++++++....+...++.
T Consensus 264 ~~~~---------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~ 298 (503)
T d3cw9a1 264 HAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPG 298 (503)
T ss_dssp HTCT---------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCS
T ss_pred CCCC---------------------------------------------CCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 3343---------------------------------------------4466514799743654445322222222221
Q ss_pred CEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECC-CCCCCCCCCCCCCCCC
Q ss_conf 410244801111142455788998786598757627999855899966789999976799856-5423112399833200
Q 004568 472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-FNVTAGYFNNPGKTSE 550 (744)
Q Consensus 472 ~i~~~YG~TEt~~~~~~~~~~~~~~~~vG~p~p~~~i~i~d~~~~~~~~~~~~g~~GEi~v~g-~~v~~gY~~~~~~t~~ 550 (744)
.+.+.||+||++..+.............+.+.+.....+.+ ..+.. ++.|+.|++++.+ +....+|+++++.|.+
T Consensus 299 ~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~ 374 (503)
T d3cw9a1 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEI---VANGEEGELIVAASDSAFVGYLNQPQATAE 374 (503)
T ss_dssp EEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCB---CCTTCCEEEEEECCTTSCCCBTTCHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEC-CCCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 12354454211201210122344444433554212565302-46863---689852200111122222223577343487
Q ss_pred CCCCCCCCCEEEEECCEEEECCCCEEEEEECCCCEEECCCEEEECCHHHHHHHHCCCCCCEEEEEECCCCC---EEEEEE
Q ss_conf 00458886503860818999579919998217890881990223117899998169674449998249998---499999
Q 004568 551 VYKVDERGMCWFYTGDIGQVYPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALISSDYVDNIMIHADPFHN---YCVALV 627 (744)
Q Consensus 551 ~f~~~~~g~gw~~TGDlg~~~~dG~l~i~GR~~d~ik~~~G~~v~~~eIE~~l~~~p~V~~~~V~g~~~~~---~~~A~v 627 (744)
.| .+ |||+|||+|++++||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++|+|
T Consensus 375 ~~---~~--g~~~TgD~g~~~~dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v 448 (503)
T d3cw9a1 375 KL---QD--GWYRTSDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448 (503)
T ss_dssp HE---ET--TEEEEEEEEEECTTSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred HH---CC--CCEECCCCCCCCCCCEEEECCCCCCEEEE-CCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf 73---18--85111354530248858857876786998-99999889999999819981579999788788981899999
Q ss_pred ECCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 83978999999992999788788833899999999999710122320022220000023449989864999852100799
Q 004568 628 VPSHKALEKWAHEASIKYEDLSELCNKAEAVNEVQQALSKASTLVSRTEFFLSRRYKTTLCLQVAKAAKLDKFEIPAKIK 707 (744)
Q Consensus 628 v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~ 707 (744)
+++.+. ..+ .++|++ ++++.+|+.|++|+.|+
T Consensus 449 ~~~~~~----------~~~---------------~~~l~~-----------------------~~~~~~l~~~~~P~~i~ 480 (503)
T d3cw9a1 449 VPRLGE----------TLS---------------ADALDT-----------------------FCRSSELADFKRPKRYF 480 (503)
T ss_dssp EECTTC----------CCC---------------HHHHHH-----------------------HHHHSSSCGGGSCSEEE
T ss_pred EECCCC----------CCC---------------HHHHHH-----------------------HHHHCCCCCCCCCCEEE
T ss_conf 967899----------999---------------999999-----------------------99866899777833899
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7259999998953543233838999999
Q 004568 708 LMPEPWTPEAGLVTAALKIKREQLKAKF 735 (744)
Q Consensus 708 ~~~~~~~p~~~~~t~~gKi~R~~l~~~~ 735 (744)
+++++ | +|++|||+|++|++++
T Consensus 481 ~v~~~--P----~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 481 ILDQL--P----KNALNKVLRRQLVQQV 502 (503)
T ss_dssp ECSCC--C----BCTTSCBCHHHHHHHH
T ss_pred EECCC--C----CCCCCCCCHHHHHHHC
T ss_conf 98988--8----6988682299999965
|