Citrus Sinensis ID: 004575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740----
MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNDSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVDYDDDEDDEDYRPPPRKQSETLEEDEGTMDSLRLKRKSASSKEKEPELVKKQRLSKNPKSRDSVFAALCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQEDSSNSINSSNNSSSDEEIHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT
cccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHccccEEEEEEcccHHHHHHHHHEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHccccccHccHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHcHHcccccccccHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcEccc
mnselrelppielstlPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIillnspqifeKIFGDELMMDIIGsleydpdvphvqhhRNFLkehvvfkeaipirdplvlskIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFArlrspttleESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVItascpqegiaqsassggrvestkpeILSNICELLCFCvlhhpyrikcNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQClessgtnnnvnsvdprkrndERALEKEEedyfndsdeedtasashtqrtqaqpvlsngvaasysslsprsgglvdydddeddedyrppprkqsetleedegtmDSLRLKRksasskekepelvkkqrlsknpksrDSVFAALCSTLSqavlpskknassmqltphtddrskgvgeqedssnsinssnnsssdeeihrdkeptasrscsdcmhggsdnrqlsgedcalippksspemavngt
mnselrelppielstlpLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANlnsiihgnNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAqsassggrvesTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLEssgtnnnvnsvdprkrndERALEKEeedyfndsdEEDTASAshtqrtqaqpvlsNGVAasysslsprsgglvdydddeddedyrppprkqsetleedegtmdslrlkrksasskekepelvkkqrlsknpksrDSVFAALCSTLSQavlpskknassmqltphtddrskgvgeqedssnsinssnnsssdeeiHRDKEPTASRSCSDCMHGgsdnrqlsgedcalippksspemavngt
MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCnfllnnvvdkvlllTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNDSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVdydddeddedyRPPPRKQSETLEEDEGTMDslrlkrksasskekePELVKKQRLSKNPKSRDSVFAALCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQEDssnsinssnnsssDEEIHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT
***********ELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCP*******************EILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCL******************************************************************************************************************************************AALC**************************************************************************************************
**SELRELPPIELSTLPLILKTVTE***********LILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSP****ESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE**********RVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVK*****************************************************************************************************************************************************************************************************************************************************
MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEG*************TKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDER****************************AQPVLSNGVAASYSSLSPRSGGLVDY************************************************************SVFAALCSTLSQAVLP****************************************************************NRQLSGEDCALIPPK**********
*NSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQ********SGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLE***********************************************************************************************************************************************************************************************************************************************
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MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEEEDYFNDSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVDYDDDEDDEDYRPPPRKQSETLEEDEGTMDSLRLKRKSASSKEKEPELVKKQRLSKNPKSRDSVFAALCSTLSQAVLPSKKNASSMQLTPHTDDRSKGVGEQEDSSNSINSSNNSSSDEEIHRDKEPTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query744 2.2.26 [Sep-21-2011]
Q5SP90818 Serine/threonine-protein yes no 0.713 0.649 0.371 1e-97
Q4S6U8818 Serine/threonine-protein N/A no 0.727 0.661 0.359 3e-94
Q6INN7822 Serine/threonine-protein N/A no 0.713 0.645 0.367 1e-92
Q6P2K6820 Serine/threonine-protein yes no 0.713 0.647 0.355 5e-91
Q801Q7820 Serine/threonine-protein N/A no 0.720 0.653 0.353 2e-90
Q7ZX60820 Serine/threonine-protein N/A no 0.720 0.653 0.353 7e-90
Q922R5820 Serine/threonine-protein no no 0.737 0.669 0.347 7e-90
Q6IN85833 Serine/threonine-protein yes no 0.713 0.637 0.347 2e-89
Q6DFT3820 Serine/threonine-protein no no 0.712 0.646 0.354 8e-89
Q5MIZ7849 Serine/threonine-protein no no 0.720 0.631 0.338 1e-82
>sp|Q5SP90|PP4R3_DANRE Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1 Back     alignment and function desciption
 Score =  358 bits (918), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 336/563 (59%), Gaps = 32/563 (5%)

Query: 1   MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 58
           M+S   ELPP ELS L  + + V  S +   +R  +L L   ++ + RKL++LFR+CEDL
Sbjct: 125 MSSPGLELPPCELSRLEEVAELVA-SSLPSPLRREKLALALENEGYIRKLLELFRVCEDL 183

Query: 59  ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 118
           EN +GLH ++ IIKGI LLN   +FE +F +E +MD+IG LE+DP +P  + HR FL   
Sbjct: 184 ENREGLHHLYDIIKGIFLLNRTALFEVMFSEECIMDVIGCLEFDPSLPQPRRHREFLTTT 243

Query: 119 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVL--ARVLDEATVANLNSIIHGNNAYVVSL 176
             FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct: 244 ARFKEVIPISDPELRQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query: 177 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 236
           L+DD  F+ ELFA+L    T ++ +  LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct: 304 LQDDEKFLTELFAQLTDEATDDDKRHELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query: 237 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 291
             +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct: 364 QALEVILGMDDVQVRGAATDIFSYLVEYNPSMVREFVMQESQQNDDDILLINLIIEHMIC 423

Query: 292 DFGEDM--HCQFLEILRSLLDS----YTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE 345
           D   ++    Q + +LR+L+D      T +  ++   +  FY+  +  L   + A+  +E
Sbjct: 424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLSFFYKHCMHVLSAPLLANTTEE 483

Query: 346 GIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLN-NVVDKVLLLTRRRE 404
             ++        +    ++L+ I ELL FCV HH Y IK N+++N +++ +VL+LT  + 
Sbjct: 484 KPSKD-------DFQTCQLLALIVELLTFCVEHHTYHIK-NYIINKDILRRVLVLTASQH 535

Query: 405 KYLVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYI 464
            +L + A+RF+R I+   DE    + ++N L +P+V AF+ NG+RYNL+NSA++E+FEY+
Sbjct: 536 AFLALCALRFMRKIIGLKDEFYNRYIMRNFLFEPVVKAFLNNGSRYNLINSAIIEMFEYV 595

Query: 465 RKENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSV-----DPR 519
           R E++KSL  +I++++W  L + +Y+ +    K++YEQ  E    N  ++S+     + R
Sbjct: 596 RVEDVKSLTAHIIENYWKGLEDVDYVQTFKGLKLRYEQQRERQD-NPKLDSMRSILRNHR 654

Query: 520 KRNDERALEKEEEDYFNDSDEED 542
            R D R LE EEE +FN +DEED
Sbjct: 655 FRRDARTLEDEEEMWFN-TDEED 676
Regulatory subunit of serine/threonine-protein phosphatase 4.
Danio rerio (taxid: 7955)
>sp|Q4S6U8|PP4R3_TETNG Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Tetraodon nigroviridis GN=smek1 PE=3 SV=1 Back     alignment and function description
>sp|Q6INN7|PP4R3_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis GN=smek1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P2K6|P4R3A_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus GN=Smek1 PE=1 SV=1 Back     alignment and function description
>sp|Q801Q7|P4R3B_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-B OS=Xenopus laevis GN=smek2-b PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX60|P4R3A_XENLA Serine/threonine-protein phosphatase 4 regulatory subunit 3-A OS=Xenopus laevis GN=smek2-a PE=2 SV=1 Back     alignment and function description
>sp|Q922R5|P4R3B_MOUSE Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Mus musculus GN=Smek2 PE=2 SV=2 Back     alignment and function description
>sp|Q6IN85|P4R3A_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=SMEK1 PE=1 SV=1 Back     alignment and function description
>sp|Q6DFT3|PP4R3_XENTR Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2 SV=1 Back     alignment and function description
>sp|Q5MIZ7|P4R3B_HUMAN Serine/threonine-protein phosphatase 4 regulatory subunit 3B OS=Homo sapiens GN=SMEK2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
255556336 884 conserved hypothetical protein [Ricinus 0.995 0.838 0.810 0.0
225431916 885 PREDICTED: serine/threonine-protein phos 0.998 0.839 0.797 0.0
296083266 1026 unnamed protein product [Vitis vinifera] 0.998 0.724 0.797 0.0
224108663 861 predicted protein [Populus trichocarpa] 0.975 0.843 0.798 0.0
224101583 878 predicted protein [Populus trichocarpa] 0.991 0.840 0.787 0.0
356521791 880 PREDICTED: serine/threonine-protein phos 0.995 0.842 0.749 0.0
356564712 881 PREDICTED: serine/threonine-protein phos 0.995 0.841 0.745 0.0
356521793 897 PREDICTED: serine/threonine-protein phos 0.995 0.826 0.732 0.0
356556026 869 PREDICTED: serine/threonine-protein phos 0.986 0.844 0.735 0.0
356532525 867 PREDICTED: serine/threonine-protein phos 0.982 0.843 0.730 0.0
>gi|255556336|ref|XP_002519202.1| conserved hypothetical protein [Ricinus communis] gi|223541517|gb|EEF43066.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/761 (81%), Positives = 674/761 (88%), Gaps = 20/761 (2%)

Query: 1   MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELILNDQDFFRKLMDLFRICEDLEN 60
           MNSELRELP +ELSTLPLILKTV+ESGIADQMRLTELILNDQ+FFRKLMDLFRICEDL+N
Sbjct: 127 MNSELRELPAVELSTLPLILKTVSESGIADQMRLTELILNDQNFFRKLMDLFRICEDLDN 186

Query: 61  IDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVV 120
            DGLHMIFKI++GII LNSPQIFEKIFGDEL+MDIIGSLEYDP++ H+QHHRNFLKEHVV
Sbjct: 187 TDGLHMIFKIVRGIIFLNSPQIFEKIFGDELIMDIIGSLEYDPEIAHIQHHRNFLKEHVV 246

Query: 121 FKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAYVVSLLKDD 180
           FKEAIPI+DP+VLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNA VVSLLKDD
Sbjct: 247 FKEAIPIKDPVVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIIHGNNAVVVSLLKDD 306

Query: 181 STFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVT 240
           STFIQELFARLRSPTT  ESKKNLV+FLHEFC LSKSLQMVQQLRLFRDL+NEGIFDI+T
Sbjct: 307 STFIQELFARLRSPTTSAESKKNLVYFLHEFCSLSKSLQMVQQLRLFRDLVNEGIFDIIT 366

Query: 241 DALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQ 300
           +ALQ QDKKL+LTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQ
Sbjct: 367 EALQDQDKKLILTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQ 426

Query: 301 FLEILRSLLDSYTLSG--AQRDTIIEIFYEKHLGQLIDVITASCPQEGIAQSA--SSGG- 355
           FLEILRSLLDSYTLSG  AQRD+IIEIFYEKHLGQLIDVITASCP E I QS+  SSG  
Sbjct: 427 FLEILRSLLDSYTLSGAHAQRDSIIEIFYEKHLGQLIDVITASCPVESIVQSSDRSSGSN 486

Query: 356 -RVE---STKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAA 411
            RVE   S KPEILSNICELLCFCVLHHPYRIKCNFLLNN++DKVL+LTRRREKYLVVAA
Sbjct: 487 RRVENQNSVKPEILSNICELLCFCVLHHPYRIKCNFLLNNIIDKVLMLTRRREKYLVVAA 546

Query: 412 VRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKS 471
           VRFVRTILSRHDEHL NHFVK+NLLKPIVDAFV NGNRYNLL+SA+LELFE+IRKENLK 
Sbjct: 547 VRFVRTILSRHDEHLTNHFVKHNLLKPIVDAFVGNGNRYNLLHSAILELFEHIRKENLKV 606

Query: 472 LVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTNNNVNSVDPRKRNDERALEKEE 531
           L+KYIVDSFWN+LV FE+LAS+ +FKVKYEQCLE+  T  +  ++DPR+RNDERALEKEE
Sbjct: 607 LIKYIVDSFWNELVKFEHLASIQAFKVKYEQCLENCVTKISGGTLDPRRRNDERALEKEE 666

Query: 532 EDYFN-DSDEEDTASASHTQRTQAQPVLSNGVAASYSSLSPRSGGLVDYDDDEDDEDYRP 590
           E+YFN DSDEEDTASA H +R Q +  +SNGVAASY SLS RSGGLVDY DDEDDEDYRP
Sbjct: 667 EEYFNEDSDEEDTASALHAKRVQPESSISNGVAASYPSLSSRSGGLVDYADDEDDEDYRP 726

Query: 591 PPRKQSETLEEDEGTMDSLRLKRKSASSKEKEPELVKKQRLSKNPKSRDSVFAALCSTLS 650
           PP+KQSE+LEEDEGTM+SL+LKRK   SK+KE E  KKQRL K+ KSR+SVFAALCSTLS
Sbjct: 727 PPKKQSESLEEDEGTMESLKLKRK-LPSKDKESEAAKKQRLGKHSKSRESVFAALCSTLS 785

Query: 651 QAVLPSKKNASSMQLTPHTDDRSKGVGEQED-------SSNSINSSNNSSSDEEIHRDKE 703
           QAVLPSKK A S+ +     D +KG+ E          S +  +SSNN    EE HR+KE
Sbjct: 786 QAVLPSKKTAGSVHIISSPADGNKGLCEDSHQPKEPAISRSCCDSSNNLR--EENHREKE 843

Query: 704 PTASRSCSDCMHGGSDNRQLSGEDCALIPPKSSPEMAVNGT 744
           P ASRSCSDC+H  S+N QLSGED  LIPPKSSPEM VNG+
Sbjct: 844 PAASRSCSDCLHSTSENGQLSGEDGPLIPPKSSPEMTVNGS 884

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431916|ref|XP_002276905.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083266|emb|CBI22902.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108663|ref|XP_002314928.1| predicted protein [Populus trichocarpa] gi|222863968|gb|EEF01099.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101583|ref|XP_002312340.1| predicted protein [Populus trichocarpa] gi|222852160|gb|EEE89707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521791|ref|XP_003529534.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356564712|ref|XP_003550593.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356521793|ref|XP_003529535.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356556026|ref|XP_003546328.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356532525|ref|XP_003534822.1| PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
UNIPROTKB|F6R1L1820 SMEK1 "Uncharacterized protein 0.717 0.651 0.360 1.9e-89
MGI|MGI:1915984820 Smek1 "SMEK homolog 1, suppres 0.717 0.651 0.358 5e-89
UNIPROTKB|F1SD90820 SMEK1 "Uncharacterized protein 0.717 0.651 0.358 5e-89
UNIPROTKB|F1NPW9844 SMEK1 "Uncharacterized protein 0.717 0.632 0.358 3.5e-88
UNIPROTKB|Q6IN85833 SMEK1 "Serine/threonine-protei 0.369 0.330 0.407 8e-88
UNIPROTKB|G3V5Z3706 SMEK1 "Uncharacterized protein 0.717 0.756 0.358 9.9e-87
UNIPROTKB|Q5MIZ7849 SMEK2 "Serine/threonine-protei 0.452 0.396 0.338 2.1e-84
FB|FBgn0024555980 flfl "falafel" [Drosophila mel 0.700 0.531 0.332 5.8e-82
UNIPROTKB|E1BFZ3767 SMEK2 "Uncharacterized protein 0.452 0.439 0.338 1.8e-79
DICTYBASE|DDB_G0289067 1046 smkA "EVH1 domain-containing p 0.705 0.501 0.316 2.2e-73
UNIPROTKB|F6R1L1 SMEK1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 868 (310.6 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
 Identities = 202/560 (36%), Positives = 320/560 (57%)

Query:     1 MNSELRELPPIELSTLPLILKTVTESGIADQMRLTELIL--NDQDFFRKLMDLFRICEDL 58
             M+S   ELP  ELS L  I + V  S +   +R  +L L   ++ + +KL++LF +CEDL
Sbjct:   125 MSSPGLELPSCELSRLEEIAELVASS-LPSPLRREKLALALENEGYIKKLLELFHVCEDL 183

Query:    59 ENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEH 118
             ENI+GLH +++IIKGI LLN   +FE +F +E +MD+IG LEYDP +   + HR FL + 
Sbjct:   184 ENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKT 243

Query:   119 VVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLAR--VLDEATVANLNSIIHGNNAYVVSL 176
               FKE IPI DP +  KIHQTYRV Y++D+VL    V +E  ++ L+S I  N   +V +
Sbjct:   244 AKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGM 303

Query:   177 LKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIF 236
             L++D  F+ +LFA+L    T EE ++ LV+FL EFC  S++LQ   +   F+ L N GI 
Sbjct:   304 LQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGIL 363

Query:   237 DIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQ-----EGIPLLGLLVKGMIT 291
               +   L   D ++    TDI    +  +P+++R +V+++     + I L+ L+++ MI 
Sbjct:   364 PALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEHMIC 423

Query:   292 DFGEDMH--CQFLEILRSLLDSYT-LSGAQRDTIIEI--FYEKHLGQLIDVITASCPQEG 346
             D   ++    Q + +LR+L+D    L+ A +    E   F+ KH    + V+TA      
Sbjct:   424 DTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHC---MHVLTAPLLANT 480

Query:   347 IAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCXXXXXXXXXXXXXXTRRREKY 406
                  S     +    ++L+ + ELL FCV HH Y IK                  +  +
Sbjct:   481 TEDKPSKD---DFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAF 537

Query:   407 LVVAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRK 466
             L + A+RF R I+   DE    + +K+ L +P+V AF+ NG+RYNL+NSA++E+FE+IR 
Sbjct:   538 LALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRV 597

Query:   467 ENLKSLVKYIVDSFWNQLVNFEYLASLHSFKVKYEQCLESSGTN--NNVNSV--DPRKRN 522
             E++KSL  ++V+++W  L + +Y+ +    K+++EQ  E       +++ S+  + R R 
Sbjct:   598 EDIKSLTAHVVENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRR 657

Query:   523 DERALEKEEEDYFNDSDEED 542
             D R LE EEE +FN +DE+D
Sbjct:   658 DARTLEDEEEMWFN-TDEDD 676
GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA
GO:0030289 "protein phosphatase 4 complex" evidence=IEA
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
MGI|MGI:1915984 Smek1 "SMEK homolog 1, suppressor of mek1 (Dictyostelium)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD90 SMEK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPW9 SMEK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN85 SMEK1 "Serine/threonine-protein phosphatase 4 regulatory subunit 3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V5Z3 SMEK1 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5MIZ7 SMEK2 "Serine/threonine-protein phosphatase 4 regulatory subunit 3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0024555 flfl "falafel" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFZ3 SMEK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289067 smkA "EVH1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
pfam04802193 pfam04802, SMK-1, Component of IIS longevity pathw 2e-92
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1 Back     alignment and domain information 
 Score =  286 bits (733), Expect = 2e-92
 Identities = 97/193 (50%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

Query: 39  LNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGS 98
           L ++D+  KL+ LF +CEDLEN+D LH++  I+K +ILLN  QI E I  DE +M ++G 
Sbjct: 1   LENEDYIPKLIPLFHMCEDLENLDDLHLLCNIVKTLILLNDSQILEIILSDENIMGVVGC 60

Query: 99  LEYDPDVPHVQ-HHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLARVLDEA 157
           LEYDP+ P  + +HR FL ++  FKE IPI++P +  KIHQTYR+ YLKDVVL RVLD+ 
Sbjct: 61  LEYDPEFPQPKANHRQFLTQNAKFKEVIPIKNPELRQKIHQTYRLQYLKDVVLPRVLDDN 120

Query: 158 TVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLSKS 217
           T + LNS I  N   +V+LL+DD  F++ELFA L   +T +E +++LV FLHEFC ++KS
Sbjct: 121 TFSTLNSFIFFNQVEIVTLLQDDEKFLEELFALLTDSSTSDERRRDLVLFLHEFCNIAKS 180

Query: 218 LQMVQQLRLFRDL 230
           LQ   +   F+ L
Sbjct: 181 LQPQSRSTFFKTL 193

SMK-1 is a component of the IIs longevity pathway which regulates aging in C.elegans. Specifically, SMK-1 influences DAF-16-dependant regulation of the aging process by regulating the transcriptional specificity of DAF-16 activity. SMK-1 plays a role in longevity by modulating the transcriptional specificity of DAF-16. Length = 193

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 744
KOG2175458 consensus Protein predicted to be involved in carb 100.0
PF04802193 SMK-1: Component of IIS longevity pathway SMK-1; I 100.0
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.18
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.74
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 95.41
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 94.32
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 92.87
PF04499475 SAPS: SIT4 phosphatase-associated protein; InterPr 92.85
KOG2175458 consensus Protein predicted to be involved in carb 92.25
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.0
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 90.97
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 90.84
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 90.74
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 90.27
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 90.05
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 88.97
KOG2734536 consensus Uncharacterized conserved protein [Funct 86.2
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 84.54
PTZ00429 746 beta-adaptin; Provisional 83.98
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-96  Score=797.33  Aligned_cols=442  Identities=45%  Similarity=0.756  Sum_probs=417.6

Q ss_pred             cchHHHH-HHHHhccHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCChhhHHhhhcchhHhHHhhhcccCCCCC
Q 004575           28 IADQMRL-TELILNDQDFFRKLMDLFRICEDLENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVP  106 (744)
Q Consensus        28 ~~~~~rl-~~~Il~~~~YI~KLl~LF~~cEdlenle~Lh~L~~IvK~IilLNd~~I~E~llsDe~i~~VVG~LEYDPe~p  106 (744)
                      .+++.|. ..+.+++++||+||+++|+.|||++++++||++|+|+|+||++|...|+|.|++|++||+|+|||||||++|
T Consensus         4 ~~~~~r~~~~~~ie~e~~f~~Li~lF~~Ced~e~~d~L~~l~~Iik~i~~ln~~~iLe~~~~d~~im~v~g~lEydp~~~   83 (458)
T KOG2175|consen    4 QTDQRREKLVLALENENYFQKLIELFHTCEDLENTDGLHHLFSIIKNIFLLNKSDILESIFDDECIMDVIGCLEYDPAVP   83 (458)
T ss_pred             ccHHHHHHHHHHHhcchHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCchHHHHHhccccccccccccccCccCC
Confidence            4556665 246677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchHHHhhhcCCceeeeecCChHHHHHHHhhhhcceeeehhcc--cccchhhHHhHHHHHHhhHHHHHHHhhcChHHH
Q 004575          107 HVQHHRNFLKEHVVFKEAIPIRDPLVLSKIHQTYRVGYLKDVVLA--RVLDEATVANLNSIIHGNNAYVVSLLKDDSTFI  184 (744)
Q Consensus       107 ~~~nHR~fL~~~akFKEVIPI~d~~i~~KIHqTYRLqYLKDVVLa--R~LDD~t~s~LnS~IffNqveIV~~Lq~d~~FL  184 (744)
                      ++++||+||...++|||||||.||.++.|||||||+|||||||||  +++||++++++||+||+|+++||++||+|..|+
T Consensus        84 ~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhqt~r~q~l~d~vl~~~~~~~~a~~~~l~s~i~~~~~~ii~~lqed~~~l  163 (458)
T KOG2175|consen   84 QSKKHREFLSLLAKFKEVIPISDPELLAKIHQTFRVQYLKDVVLPEPGVFDEATGNTLNSFIFFNKVNIVSLLQEDEKFL  163 (458)
T ss_pred             ChhhhHHHHHhhccceeeeecCCHHHHHHHHHHHHHHHhheeeecCCcchhcchhHHHHHHHHHhhhhhhhhhhcCchHH
Confidence            998899999999999999999999999999999999999999999  899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHHHHHhhhccChHhHHHHHHHHHhcCcHHHHHHHHcCCChhhhHHHHHHHHHHHhc
Q 004575          185 QELFARLRSPTTLEESKKNLVHFLHEFCGLSKSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQ  264 (744)
Q Consensus       185 ~eLF~~l~~~~~~~e~rrd~v~FL~E~c~~sK~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iie~  264 (744)
                      .+||+++++++++.++|++++.|+||||+++|+||++.|.+||++|++.|||++++++++++|.++|.+++||+..++++
T Consensus       164 ~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~~di~~~~ve~  243 (458)
T KOG2175|consen  164 IELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAATDILARLVEM  243 (458)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhccCCC-----cHHHHHHHHhhcCCcchH--HHHHHHHHHhcCCCCCChh--hHHHHHHHHHHHHHHHHH
Q 004575          265 DPNLLRSYVVRQEGIP-----LLGLLVKGMITDFGEDMH--CQFLEILRSLLDSYTLSGA--QRDTIIEIFYEKHLGQLI  335 (744)
Q Consensus       265 dPslvR~~i~~qe~~~-----Ll~lLi~~ll~D~~~gL~--~Ql~eaLk~LLDp~~m~~~--ekd~fL~~FY~~~~~~L~  335 (744)
                      +|.++|++..+++..+     ++++++++|++|.++.+-  +|++.++++||||++|.++  ++.+|+++||+.|++.+.
T Consensus       244 ~~~~i~~~~~~~~~~~~~~~~~~nl~~s~~l~d~d~~~~~~s~~~~i~~tll~~~~~~~~~~~~se~l~~~~~~c~~~~~  323 (458)
T KOG2175|consen  244 SPSMIRSFTLGEALDPDDEKLLLNLAISHMLEDFDPELSGASQLMLILSTLLDPENMLTLASEKSEFLNFFYKHCMHSLS  323 (458)
T ss_pred             CHHHHHHHHHHhhcCchhhHHHHHHHHHhhccccCccccchHHHHHHHHHhhCccccCCccchhHHHhhhhhccccccCC
Confidence            9999999999876555     999999999999988775  8999999999999999885  899999999999987665


Q ss_pred             HHHHhcCCccccccccCCCCCcCCCcHHHHHHHHHHHHHHHhcCCccchhHHhhhhHHHHHHHhhcccchhHHHHHHHHH
Q 004575          336 DVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCFCVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFV  415 (744)
Q Consensus       336 ~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~Fcv~~H~yriK~~~l~~nll~kVl~Ll~~~~K~L~LaALRFl  415 (744)
                      .|+...       .+       ..+.++.++.+++++|||+.||+|+||+|++++++++||+.|+++++++|+++|+||.
T Consensus       324 ~p~~~~-------~~-------s~~sa~~~~v~~~~l~fc~~~~s~si~n~~~~~d~~~~vlvl~~s~~~~l~~~a~~~~  389 (458)
T KOG2175|consen  324 APLVGN-------TS-------SNQSAQNLSVILELLTFCVEHHSFSIKNYIVSSDLLNKVLVLMSSKHSFLVLGALRYL  389 (458)
T ss_pred             Ccchhh-------cc-------cccccchhhhhhhhhhHHHHhcccccccHhhcchhhccceehhccccHHHHHHHHHhh
Confidence            543221       10       1257788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccChhHHHHHHHhhCcHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhhchHHHHHHHHHHHHhhhc
Q 004575          416 RTILSRHDEHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQLV  485 (744)
Q Consensus       416 R~iI~lkDefy~ryiIk~nLf~PVl~~f~~ng~R~NLlnSA~LELfEfIr~eNik~Li~hlve~y~~~l~  485 (744)
                      |.++.++|++|+||++++  ++|+++.|.+||.||||+|||+++||||||.||+|+|++|+|++||+.++
T Consensus       390 ~~~~~L~d~~~~~~ivk~--~~p~~~~~~~n~trynll~s~~l~l~efi~~e~~k~l~~~~v~~~~~~~~  457 (458)
T KOG2175|consen  390 RKIPILEDEKYNKYIVKS--FKPVIDGFIENGTRYNLLNSAVLELFEFIRVEDIKPLLSYIVENFQNGLA  457 (458)
T ss_pred             hccchhchHHHHHHHhhc--cccchhhHhhcCChhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhcc
Confidence            999999999999999999  99999999999999999999999999999999999999999999999875

>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein [] Back     alignment and domain information
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.1 bits (199), Expect = 8e-16
 Identities = 87/612 (14%), Positives = 184/612 (30%), Gaps = 168/612 (27%)

Query: 24  TESGIADQMRLT--ELILNDQDFFRKLMDLFRICEDLENIDGLHMIFK------IIK--- 72
            E+G   + +    +++   +D F    D    C+D++  D    I        II    
Sbjct: 9   FETG---EHQYQYKDILSVFEDAFVDNFD----CKDVQ--DMPKSILSKEEIDHIIMSKD 59

Query: 73  ---------GIILLNSPQIFEKIFGDELMMD---IIGSLEYDPDVPHV-------QHHRN 113
                      +L    ++ +K   + L ++   ++  ++ +   P +       Q  R 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 114 FLKEHVVFKEAIPIRDPL-----VLSKIHQTYRV------GYLKDVVLARVL-DEATVAN 161
           +    V  K  +    P       L ++     V      G  K  V   V         
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 162 LNSIIH----GNNAYVVSLLKDDSTFIQELFARLRSP-TTLEESKKNLVHFLHEFCGLSK 216
           ++  I      N     ++L+     +Q+L  ++    T+  +   N+   +H      +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 217 SLQMVQQ----LRLFRDLMNEGI---FDI------------VTDALQSQ--------DKK 249
            L   +     L +  ++ N      F++            VTD L +            
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 250 LVLT---GTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGEDMHCQFLEILR 306
           + LT      +L+ +L+  P  L   V+     P        +I +   D    +     
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPR----RLSIIAESIRDGLATWDNWKH 349

Query: 307 SLLDSYTLSGAQRDTIIEIFYEKHLGQLIDVITASCPQE-GIAQSASSGGRVESTK-PEI 364
              D  T       TIIE         L             +           S   P I
Sbjct: 350 VNCDKLT-------TIIESSLN----VLEPAEYRKMFDRLSVFP--------PSAHIPTI 390

Query: 365 LSNICELLCFCVL-HHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILSRHD 423
           L          ++     +     ++N +     L+ ++ ++  +           S   
Sbjct: 391 L--------LSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI-----------SIPS 430

Query: 424 EHLINHFVKNNLLKPIVDAFVANGNRYNLLNSAVLELFEYIRKENLKSLVKYIVDSFWNQ 483
            +L         LK  ++      N Y L + ++++ +   +  +   L+   +D ++  
Sbjct: 431 IYL--------ELKVKLE------NEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 484 -----LVNFEYLASLHSFKVKY------EQCLESSGTNNNVNSVDPRKRNDERALEKEEE 532
                L N E+   +  F++ +      EQ +    T  N +       N  + L+   +
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG---SILNTLQQLKF-YK 531

Query: 533 DYFNDSDEEDTA 544
            Y  D+D +   
Sbjct: 532 PYICDNDPKYER 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query744
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.86
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.51
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.43
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.29
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.71
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 89.75
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 83.96
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=0.00084  Score=40.24  Aligned_cols=354  Identities=10%  Similarity=0.089  Sum_probs=194.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf             29945579999999999962872357766051237677532245999988401078842148830435059957999988
Q 004575           58 LENIDGLHMIFKIIKGIILLNSPQIFEKIFGDELMMDIIGSLEYDPDVPHVQHHRNFLKEHVVFKEAIPIRDPLVLSKIH  137 (744)
Q Consensus        58 lenl~~Lh~L~~IvK~IilLNd~~IiE~llsDe~i~~VVGiLEYDPe~p~~~nHR~fL~~~akFKEVIPI~d~~i~~KIH  137 (744)
                      ..+.+....-..-++.++......-++.++.-..+-.++..|.++..-.-...==..|.+-+..       ++.....+-
T Consensus        87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~-------~~~~~~~~~  159 (503)
T d1wa5b_          87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG-------TSAQTKVVV  159 (503)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-------CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-------CHHHHHHHH
T ss_conf             9999999999999999974078843999998798499999871799999999999999999749-------888779999


Q ss_pred             HHHHCCEEEEHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             443001122000243--441355775798997518999998415968999999980899987786898999999999742
Q 004575          138 QTYRVGYLKDVVLAR--VLDEATVANLNSIIHGNNAYVVSLLKDDSTFIQELFARLRSPTTLEESKKNLVHFLHEFCGLS  215 (744)
Q Consensus       138 qTYRLqYLKDVVLaR--iLDD~t~s~LnSlIffNqveIV~~Lq~d~~FL~eLF~~l~~~~~~~e~krd~v~FL~E~c~~a  215 (744)
                      ..--+.+|-...-..  -+-+..+..|..+...+. +.-..+.. ...+..|...+.+..  ..-++.++..|..+|...
T Consensus       160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~-~~r~~l~~-~~~~~~L~~ll~~~~--~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST-DYRDYVLQ-CNAMEPILGLFNSNK--PSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH-HHHHHHHH-TTCHHHHHHGGGSCC--HHHHHHHHHHHHHHHCCS
T ss_pred             HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HCCCCCCHHHCCCCC--HHHHHHHHHHHHHHHCCC
T ss_conf             67874789998559971589999999999854118-99998874-135563012045688--899999999999984687


Q ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
Q ss_conf             10582769999999983582999999972999025677789999998339289999998504977099999987306882
Q 004575          216 KSLQMVQQLRLFRDLMNEGIFDIVTDALQSQDKKLVLTGTDILILFLNQDPNLLRSYVVRQEGIPLLGLLVKGMITDFGE  295 (744)
Q Consensus       216 K~LQ~~~r~~lfk~Lv~~GLl~vi~~~L~~~d~~ir~~atDILi~iid~DPslvR~~i~~qe~~~LL~lLi~~li~D~~~  295 (744)
                      .....        .....|+++.+...+.+.|..++..++-.+..+.++++..+.. +.+   ...+..|+..+ ...+.
T Consensus       236 ~~~~~--------~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~-~~~---~~~~~~l~~ll-~~~~~  302 (503)
T d1wa5b_         236 KPQPD--------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA-VID---VRIPKRLVELL-SHEST  302 (503)
T ss_dssp             SSCCC--------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHH-HHH---TTCHHHHHHGG-GCSCH
T ss_pred             CCCHH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH-HHH---HHHHHHHHHCC-CCCCH
T ss_conf             42047--------9999999999998723563899999999987532277111100-112---23311101102-57863


Q ss_pred             CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             0599999999983288887803377999999997-899999999712995422223699987678808899989889999
Q 004575          296 DMHCQFLEILRSLLDSYTLSGAQRDTIIEIFYEK-HLGQLIDVITASCPQEGIAQSASSGGRVESTKPEILSNICELLCF  374 (744)
Q Consensus       296 gLk~Q~~eiLk~LLDp~~m~~~e~d~fL~~FY~~-~~~~L~~pL~~~~p~~~~~~~~~~~~~v~~~~~~ll~~l~ELL~F  374 (744)
                      .++.....++..+.-..       +.......+. .++.|...+.                   .....+....+-.|+.
T Consensus       303 ~v~~~al~~l~nl~~~~-------~~~~~~~~~~~~l~~l~~ll~-------------------~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         303 LVQTPALRAVGNIVTGN-------DLQTQVVINAGVLPALRLLLS-------------------SPKENIKKEACWTISN  356 (503)
T ss_dssp             HHHHHHHHHHHHHTTSC-------HHHHHHHHHTTHHHHHHHHTT-------------------CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHCCCHHHHHHHHHC-------------------CCCHHHHHHHHHHHHH
T ss_conf             64456777777787788-------887876312340999999963-------------------9978889999877888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             9840885104578551289999986204412689999999999970--67158999998618679999999881887750
Q 004575          375 CVLHHPYRIKCNFLLNNVVDKVLLLTRRREKYLVVAAVRFVRTILS--RHDEHLINHFVKNNLLKPIVDAFVANGNRYNL  452 (744)
Q Consensus       375 cv~~H~yriK~~il~~nli~kVl~Ll~~~~K~L~LaAlRFlR~iI~--l~Defy~ryiIk~nLf~PIl~~f~~ng~R~NL  452 (744)
                      +.......+. .++..+++..+..++...+.-.+..|+.++.+++.  .++.....+++.++++.++++.+..   .+.=
T Consensus       357 l~~~~~~~~~-~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~---~d~~  432 (503)
T d1wa5b_         357 ITAGNTEQIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI---ADNR  432 (503)
T ss_dssp             HTTSCHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT---CCHH
T ss_pred             HHHCCHHHHH-HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCC---CCHH
T ss_conf             8614698889-99971465236776026873689999999999973653548999999989769999998659---9889


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4679999999999
Q 004575          453 LNSAVLELFEYIR  465 (744)
Q Consensus       453 lnSAiLELfEfIr  465 (744)
                      +-.++|+.+..|-
T Consensus       433 ~~~~~L~~l~~ll  445 (503)
T d1wa5b_         433 IIEVTLDALENIL  445 (503)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure