Citrus Sinensis ID: 004579
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 744 | 2.2.26 [Sep-21-2011] | |||||||
| Q41142 | 808 | Phospholipase D alpha 1 O | N/A | no | 1.0 | 0.920 | 0.872 | 0.0 | |
| P86387 | 808 | Phospholipase D alpha 1 O | N/A | no | 1.0 | 0.920 | 0.844 | 0.0 | |
| P93400 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.998 | 0.919 | 0.841 | 0.0 | |
| O04865 | 809 | Phospholipase D alpha 1 O | N/A | no | 1.0 | 0.919 | 0.841 | 0.0 | |
| O82549 | 810 | Phospholipase D alpha 1 O | N/A | no | 0.998 | 0.917 | 0.837 | 0.0 | |
| Q38882 | 810 | Phospholipase D alpha 1 O | yes | no | 0.998 | 0.917 | 0.831 | 0.0 | |
| Q9SSQ9 | 810 | Phospholipase D alpha 2 O | no | no | 0.998 | 0.917 | 0.825 | 0.0 | |
| P55939 | 812 | Phospholipase D alpha 2 O | N/A | no | 0.998 | 0.915 | 0.820 | 0.0 | |
| Q43007 | 812 | Phospholipase D alpha 1 O | yes | no | 0.998 | 0.915 | 0.799 | 0.0 | |
| Q43270 | 812 | Phospholipase D alpha 1 O | N/A | no | 0.998 | 0.915 | 0.806 | 0.0 |
| >sp|Q41142|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1404 bits (3633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/744 (87%), Positives = 707/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ EQSNPRWYESFH+YCAH ASN+IFTVKDDNPIGATLIGRAYVPVEE+L GEE+D+W
Sbjct: 65 ILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLIGRAYVPVEELLDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NP+ SGSKIHVKLQYF+VTKDR+W +GIRS+KYPGVP+T++ QR+GCKVSLY
Sbjct: 125 VEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSSKYPGVPYTYFSQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PD FVP+IPLAGG YYEPHRCWED+FDAITNA+H+IYITGWSVYTEISL+RDSRR
Sbjct: 185 QDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE FFQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHFFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+SFVGG+DLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSFVGGLDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YD+PFHSLFRTLD+AHHDDFHQPNF GASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ LREL D+IIPPSPVMYPDD + WNVQLFRSIDGGAAFGFPETPEDA
Sbjct: 425 RWRKQGGKDLLIQLRELEDVIIPPSPVMYPDDFEAWNVQLFRSIDGGAAFGFPETPEDAP 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSF WS DGIKPE+INALHL
Sbjct: 485 EAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKI+SKI AGERFTVYIVVPMWPEG PES SVQAILDWQ+RTM+MMYKD+VQAL
Sbjct: 545 IPKELSLKILSKIAAGERFTVYIVVPMWPEGIPESASVQAILDWQKRTMEMMYKDIVQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
+A GI+EDPRNYLTFFCLGNREVK+SGEYEPAE+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 605 KANGIIEDPRNYLTFFCLGNREVKKSGEYEPAEKPEPDTDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMG YQP+HLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHLSTRQPARGQIHGFRMSLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD++FL PES ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGT
Sbjct: 725 LDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Ricinus communis (taxid: 3988) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4 |
| >sp|P86387|PLDA1_CARPA Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1358 bits (3515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/744 (84%), Positives = 696/744 (93%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
++K E +NP+WYESFHIYCAHMASN++FTVKDDNPIGATLIGRAYVPVEE++ G++VD+W
Sbjct: 65 IIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEELIRGDQVDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NPI SKIHVKLQ+FDV KD +W GI+ A+Y GVP+TFY QR+GC+VSLY
Sbjct: 125 VEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKGARYLGVPYTFYSQRRGCRVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPD F+P+IPLAGGKYYEPHRCWED+FDAITNARH+IYITGWSVYTEI+L+RDSRR
Sbjct: 185 QDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYITGWSVYTEITLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LGELLK+KASEGV+V MLVWDDRTSV LLKKDGLMATHDEET +FQ TDVH
Sbjct: 245 PKPGGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETANYFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+Q +QIS MFTHHQKIVVVD MP+G+ + RRI+SFVGGIDLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGESQMRRIVSFVGGIDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNF G+SI KGGPREPWHDIHSRLEGP+AWDVLFNFEQ
Sbjct: 365 YDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHDIHSRLEGPVAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWR+QGGKDVLV+LREL +IIIPPSPVM+PDDH+TWNVQLFRSIDGGAAFGFPETPE+AA
Sbjct: 425 RWRQQGGKDVLVNLRELDNIIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEEAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKDNIIDRSIQDAYI+AIRRAKNFIYIENQYFLGSSF WS+D IK E+INALHL
Sbjct: 485 RAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWSSDDIKREDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIE GERFTVY+VVPMWPEG PES SVQAILDWQRRTM+MMYKD++QAL
Sbjct: 545 IPKELSLKIVSKIERGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAK EDPRNYLTFFCLGNREVK+SGEYEP+ERPEDDSDY+RAQEARRFMIYVH KMMI
Sbjct: 605 RAKDREEDPRNYLTFFCLGNREVKKSGEYEPSERPEDDSDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYII+GSANINQRSM+GARD+EIAMG YQPYHL+ PARGQIHGFRM+LWYEHLGM
Sbjct: 665 VDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLTINQPARGQIHGFRMALWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDDTFL+PE+ ECV+KVN++A +YWDLY+SE LEHDLPGHLLRYPIGVS EGDVTELPGT
Sbjct: 725 LDDTFLEPENIECVQKVNRVAGKYWDLYASELLEHDLPGHLLRYPIGVSSEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Carica papaya (taxid: 3649) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|P93400|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1345 bits (3480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/743 (84%), Positives = 691/743 (93%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
+K E +NPRWYESFHIYCAHMASN+IFTVKDDNPIGATLIGRAYVPVEE+L GEE+DKWV
Sbjct: 66 IKNEPNNPRWYESFHIYCAHMASNVIFTVKDDNPIGATLIGRAYVPVEELLEGEEIDKWV 125
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILD + NPI+ GSKIHVKLQ+FDV++D +W RGIRS+KYPGVP+TF+ QR GC+VSLYQ
Sbjct: 126 EILDREMNPIAEGSKIHVKLQFFDVSRDPNWERGIRSSKYPGVPYTFFAQRTGCRVSLYQ 185
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAHVPDNF+P+IPL+GGKYYEPHRCWEDIFDAI NA+H+IYITGWSVYTEI+LVRDSRR
Sbjct: 186 DAHVPDNFIPKIPLSGGKYYEPHRCWEDIFDAIINAKHLIYITGWSVYTEITLVRDSRRQ 245
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGDI LGELLKKKASEGV+V MLVWDDRTSV LLKKDGLMATHD+ETE+FFQGT+V+C
Sbjct: 246 KPGGDITLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDQETEQFFQGTEVNC 305
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301
+LCPRNPDDGGS +Q +QI MFTHHQKIVVVDS +P+G+ E+RRI+SFVGGIDLCDGRY
Sbjct: 306 VLCPRNPDDGGSIVQSLQIGTMFTHHQKIVVVDSELPSGESEKRRILSFVGGIDLCDGRY 365
Query: 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 361
DTPFHSLFRTLDTAHHDDFHQPNFP +I KGGPREPWHDIHSRLEGPIAWDVLFNFEQR
Sbjct: 366 DTPFHSLFRTLDTAHHDDFHQPNFPDGAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 425
Query: 362 WRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAAR 421
WRKQGGKDVLV+ REL DIIIPPSPVM+ DD +TWNVQLFRSID GAAFGFPETPEDAA+
Sbjct: 426 WRKQGGKDVLVNFRELDDIIIPPSPVMHLDDSETWNVQLFRSIDEGAAFGFPETPEDAAK 485
Query: 422 AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLI 481
AGLVSG DNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS+ W +D IK E+I ALH+I
Sbjct: 486 AGLVSGXDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYDWQSDDIKVEDIGALHVI 545
Query: 482 PKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALR 541
PKEL+LKIVSKIEAGERFTVY+VVPMWPEG PES SVQAILDWQRRTM+MMYK +VQAL
Sbjct: 546 PKELALKIVSKIEAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMEMMYKHIVQALN 605
Query: 542 AKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIV 601
AKGI EDPRNYLTFFC+GNREVK+SG YEP+E PE DSDY+RAQEARRFMIYVH+KMMIV
Sbjct: 606 AKGIEEDPRNYLTFFCIGNREVKKSGAYEPSETPEPDSDYIRAQEARRFMIYVHSKMMIV 665
Query: 602 DDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGML 661
DDEYII+GSANINQRSM+GARD+EIAMG YQP+HL+TR PARGQIHGFRM+LWYEHLGML
Sbjct: 666 DDEYIIVGSANINQRSMDGARDSEIAMGAYQPHHLATREPARGQIHGFRMALWYEHLGML 725
Query: 662 DDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTE 721
D+TFL PES ECV KVN++A++YWDLYSSESLE DLPGHLLRYPIGV+ EGDVTELPG E
Sbjct: 726 DETFLHPESEECVSKVNRMADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGAE 785
Query: 722 FFPDTKARVLGTKSDYMPPVLTT 744
FPDTKARVLGTKSDY+PP+LTT
Sbjct: 786 HFPDTKARVLGTKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1340 bits (3467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/745 (84%), Positives = 687/745 (92%), Gaps = 1/745 (0%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+++ E +NP+W ESFHIYC H+ASNIIFTVKDDNPIGATLIGRAYVPV EVL G E+DKW
Sbjct: 65 IIENETTNPKWNESFHIYCGHLASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGHEIDKW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILD ++NPI GSKIHV+LQYFDV KDR+WARGIRS KYPGVP+TF+ QR+GCKV LY
Sbjct: 125 VEILDTEKNPIEGGSKIHVRLQYFDVLKDRNWARGIRSPKYPGVPYTFFSQRQGCKVFLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNFVP+IPLAGGK YE HRCWEDIFDAITNA+H+IYITGWSVYTEISL+RDSRR
Sbjct: 185 QDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHLIYITGWSVYTEISLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PK GGD +GELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE+FF+ TDVH
Sbjct: 245 PKAGGDQTIGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGD-PERRRIMSFVGGIDLCDG 299
C+LCPRNPDDGGS +QD+QIS MFTHHQKIVVVDS +P G ++RRI+SFVGG+DLCDG
Sbjct: 305 CVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGGGSDKRRIVSFVGGLDLCDG 364
Query: 300 RYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFE 359
RYDT FHSLFRTLDTAHHDDFHQPNFPGA+I KGGPREPWHDIHSR+EGPIAWDVLFNFE
Sbjct: 365 RYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRVEGPIAWDVLFNFE 424
Query: 360 QRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDA 419
QRWRKQGGKD+L LREL D+IIPPSPV +PDDH+TWNVQLFRSIDGGAAFGFP+TPEDA
Sbjct: 425 QRWRKQGGKDILAPLRELEDVIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPDTPEDA 484
Query: 420 ARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALH 479
A+AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSF+W+ D IK EEI ALH
Sbjct: 485 AKAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFSWNNDDIKREEIGALH 544
Query: 480 LIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQA 539
LIPKELSLKIVSKIEAGERF VY+VVPMWPEG PES SVQAILDWQ+RT++MMYKDVVQA
Sbjct: 545 LIPKELSLKIVSKIEAGERFAVYVVVPMWPEGIPESSSVQAILDWQKRTIEMMYKDVVQA 604
Query: 540 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMM 599
LRAKG EDPRNYLTFFCLGNREVK+SGEYEPAE+PE DSDY RAQEARRFMIYVH KMM
Sbjct: 605 LRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPAEQPEPDSDYQRAQEARRFMIYVHTKMM 664
Query: 600 IVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLG 659
IVDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+ PARGQ++GFRMSLWYEHLG
Sbjct: 665 IVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLANTQPARGQVYGFRMSLWYEHLG 724
Query: 660 MLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPG 719
ML DTF +PES EC+ KVNQIA++YWDLYSSESLE DLPGHLLRYPIGV+ EG+VTELPG
Sbjct: 725 MLHDTFQRPESEECINKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGEVTELPG 784
Query: 720 TEFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LG K+DY+PP+LTT
Sbjct: 785 FEFFPDTKARILGAKADYLPPILTT 809
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Vigna unguiculata (taxid: 3917) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|O82549|PLDA1_BRAOC Phospholipase D alpha 1 OS=Brassica oleracea var. capitata GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1339 bits (3465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/744 (83%), Positives = 687/744 (92%), Gaps = 1/744 (0%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
+K E NP+WYESFHIYCAH+AS+IIFTVKDDNPIGATLIGRAYVPV++V+ GEEVD+WV
Sbjct: 67 IKDEAKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAYVPVDQVIHGEEVDQWV 126
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILD DRNPI GSKIHVKLQYF V DR+W +GI+SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 127 EILDNDRNPIHGGSKIHVKLQYFGVEADRNWNQGIKSAKFPGVPYTFFSQRQGCKVSLYQ 186
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+PDNFVP IPLAGGK YEP RCWEDIFDAI+NA+HMIYITGWSVYTEI+LVRDSRRP
Sbjct: 187 DAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAQHMIYITGWSVYTEIALVRDSRRP 246
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGD+ +GELLKKKASEGVRV +LVWDDRTSV +LKKDGLMATHDEETE FF+G+DVHC
Sbjct: 247 KPGGDVTVGELLKKKASEGVRVLLLVWDDRTSVDVLKKDGLMATHDEETENFFRGSDVHC 306
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPN-GDPERRRIMSFVGGIDLCDGR 300
ILCPRNPDDGGS +Q++Q+SAMFTHHQKIVVVDS MP+ G + RRI+SFVGGIDLCDGR
Sbjct: 307 ILCPRNPDDGGSIVQNLQVSAMFTHHQKIVVVDSEMPSRGGSQMRRIVSFVGGIDLCDGR 366
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDT HHDDFHQPNF GA+I KGGPREPWHDIHSRLEGPIAWDVL+NFEQ
Sbjct: 367 YDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVLYNFEQ 426
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW KQGGKD+LV LREL DIII PSPVM+ +DHD WNVQLFRSIDGGAA GFPE+PE AA
Sbjct: 427 RWSKQGGKDILVKLRELSDIIITPSPVMFQEDHDVWNVQLFRSIDGGAAAGFPESPEAAA 486
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIYIENQYFLGSSFAW+ADGI PE+INALHL
Sbjct: 487 EAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWAADGITPEDINALHL 546
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIE GE+F VY+VVPMWPEG PES SVQAILDWQRRTM MMYKD+VQAL
Sbjct: 547 IPKELSLKIVSKIEKGEKFRVYVVVPMWPEGLPESASVQAILDWQRRTMQMMYKDIVQAL 606
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAERP+ DS Y++AQEARRFMIYVH KMMI
Sbjct: 607 RAQGLEEDPRNYLTFFCLGNREVKKEGEYEPAERPDADSSYMKAQEARRFMIYVHTKMMI 666
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQIHGFRMSLWYEHLGM
Sbjct: 667 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQIHGFRMSLWYEHLGM 726
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL P S EC++KVN+I+++YWDLYSSESLEHDLPGHLLRYP+ V GEGDVTE PG
Sbjct: 727 LDETFLDPSSVECIEKVNRISDKYWDLYSSESLEHDLPGHLLRYPVDVDGEGDVTEFPGF 786
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct: 787 EFFPDTKARILGTKSDYLPPILTT 810
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Brassica oleracea var. capitata (taxid: 3716) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/744 (83%), Positives = 688/744 (92%), Gaps = 1/744 (0%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
+K E NP+WYESFHIYCAH+AS+IIFTVKDDNPIGATLIGRAY+PV++V+ GEEVD+WV
Sbjct: 67 IKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAYIPVDQVINGEEVDQWV 126
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILD DRNPI GSKIHVKLQYF V +DR+W GI+SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 127 EILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKSAKFPGVPYTFFSQRQGCKVSLYQ 186
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+PDNFVP IPLAGGK YEP RCWEDIFDAI+NA+H+IYITGWSVY EI+LVRDSRRP
Sbjct: 187 DAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYITGWSVYAEIALVRDSRRP 246
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGD+ +GELLKKKASEGVRV +LVWDDRTSV +LKKDGLMATHDEETE FF+G+DVHC
Sbjct: 247 KPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVLKKDGLMATHDEETENFFRGSDVHC 306
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPN-GDPERRRIMSFVGGIDLCDGR 300
ILCPRNPDDGGS +Q +QIS MFTHHQKIVVVDS MP+ G E RRI+SFVGGIDLCDGR
Sbjct: 307 ILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRGGSEMRRIVSFVGGIDLCDGR 366
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDT HHDDFHQPNF GA+I KGGPREPWHDIHSRLEGPIAWDV++NFEQ
Sbjct: 367 YDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVMYNFEQ 426
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW KQGGKD+LV LR+L DIII PSPVM+ +DHD WNVQLFRSIDGGAA GFPE+PE AA
Sbjct: 427 RWSKQGGKDILVKLRDLSDIIITPSPVMFQEDHDVWNVQLFRSIDGGAAAGFPESPEAAA 486
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIY+ENQYFLGSSFAW+ADGI PE+INALHL
Sbjct: 487 EAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYVENQYFLGSSFAWAADGITPEDINALHL 546
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIE GE+F VY+VVPMWPEG PESGSVQAILDWQRRTM+MMYKDV+QAL
Sbjct: 547 IPKELSLKIVSKIEKGEKFRVYVVVPMWPEGLPESGSVQAILDWQRRTMEMMYKDVIQAL 606
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAE+P+ D+DY+RAQEARRFMIYVH KMMI
Sbjct: 607 RAQGLEEDPRNYLTFFCLGNREVKKDGEYEPAEKPDPDTDYMRAQEARRFMIYVHTKMMI 666
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQIHGFRMSLWYEHLGM
Sbjct: 667 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQIHGFRMSLWYEHLGM 726
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL P S EC++KVN+I+++YWD YSSESLEHDLPGHLLRYPIGV+ EGD+TELPG
Sbjct: 727 LDETFLDPSSLECIEKVNRISDKYWDFYSSESLEHDLPGHLLRYPIGVASEGDITELPGF 786
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct: 787 EFFPDTKARILGTKSDYLPPILTT 810
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q9SSQ9|PLDA2_ARATH Phospholipase D alpha 2 OS=Arabidopsis thaliana GN=PLDALPHA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1332 bits (3448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/744 (82%), Positives = 690/744 (92%), Gaps = 1/744 (0%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
+ KE NP+W+ESFHIYC HMA ++IFTVKD NPIGATLIGR Y+PVE++L GEEVD+WV
Sbjct: 67 ITKEPKNPKWFESFHIYCGHMAKHVIFTVKDANPIGATLIGRGYIPVEDILHGEEVDRWV 126
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
+ILD ++NPI+ GSKIHVKLQYF V KD++W RGI+SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 127 DILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKSAKFPGVPYTFFSQRRGCKVSLYQ 186
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+P NFVP+IPLAGGK YEPHRCWEDIFDAITNA+H+IYITGWSVYTEISLVRDSRRP
Sbjct: 187 DAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRP 246
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
K GGD+ +GELLKKKASEGV+V +LVWDDRTSV LLKKDGLMATHDEETE FF+GTDV+C
Sbjct: 247 KQGGDVTVGELLKKKASEGVKVILLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVNC 306
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301
ILCPRNPDDGGS +Q++QIS MFTHHQKIVVVDS MP+G RRI+SFVGG+DLCDGRY
Sbjct: 307 ILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGGSRSRRIVSFVGGLDLCDGRY 366
Query: 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 361
DTPFHSLFRTLDTAHHDDFHQPNF GA+I KGGPREPWHDIH RLEGPIAWDVL+NFEQR
Sbjct: 367 DTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHDIHCRLEGPIAWDVLYNFEQR 426
Query: 362 WRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAAR 421
W +QGGKD+LV +RELGDIIIPPSPV++ +DHD WNVQLFRSIDGGAA GFP++PE AA
Sbjct: 427 WSRQGGKDILVKMRELGDIIIPPSPVLFSEDHDVWNVQLFRSIDGGAAAGFPDSPEAAAE 486
Query: 422 AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLI 481
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIYIENQYFLGSSFAWSADGIKPEEINALHLI
Sbjct: 487 AGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEEINALHLI 546
Query: 482 PKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALR 541
PKELSLKIVSKI+AGE+F VY+VVPMWPEG PESGSVQAILDWQ+RTM+MMYKDV++ALR
Sbjct: 547 PKELSLKIVSKIKAGEKFKVYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYKDVIKALR 606
Query: 542 AKGIM-EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
G+ EDPR+YLTFFCLGNREVK+ GEYEP+E+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 607 ENGLEGEDPRDYLTFFCLGNREVKKDGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMI 666
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 667 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMSLWYEHLGM 726
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL P S EC++KVN++A++YWDLYSSESLEHDLPGHLLRYPIG++ EG++TELPG
Sbjct: 727 LDETFLDPSSQECIQKVNRVADKYWDLYSSESLEHDLPGHLLRYPIGIASEGNITELPGC 786
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LG KSDYMPP+LTT
Sbjct: 787 EFFPDTKARILGVKSDYMPPILTT 810
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|P55939|PLDA2_BRAOC Phospholipase D alpha 2 OS=Brassica oleracea var. capitata GN=PLD2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1319 bits (3413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/745 (82%), Positives = 682/745 (91%), Gaps = 2/745 (0%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
+ E NP+WYESFHIYCAHMAS+IIFTVKDDNPIGATLIGRAYVPV+EV+ GEEV+KWV
Sbjct: 68 ITDEPKNPKWYESFHIYCAHMASDIIFTVKDDNPIGATLIGRAYVPVDEVINGEEVEKWV 127
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILD+DRNPI SKIHVKLQYF V DR+W G++SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 128 EILDDDRNPIHGESKIHVKLQYFAVEADRNWNMGVKSAKFPGVPYTFFSQRQGCKVSLYQ 187
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
AHVPDNFVP+IPLAGGK YEPHRCWEDIFDAITNA+H+IYITGWSVYTEI+LVRDSRRP
Sbjct: 188 GAHVPDNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYITGWSVYTEITLVRDSRRP 247
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGD+ LGELLKKKA+EGVRV +LVWDDRTSV +LKKDGLMATHDE+TE +F G++VHC
Sbjct: 248 KPGGDMTLGELLKKKATEGVRVLLLVWDDRTSVDVLKKDGLMATHDEDTENYFNGSEVHC 307
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPN--GDPERRRIMSFVGGIDLCDG 299
+LCPRNPDDGGS +Q++Q+SAMFTHHQKIVVVDS +P+ G E RRIMSFVGGIDLCDG
Sbjct: 308 VLCPRNPDDGGSIVQNLQVSAMFTHHQKIVVVDSEVPSQGGGSEMRRIMSFVGGIDLCDG 367
Query: 300 RYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFE 359
RYDTPFHSLFRTLDT HHDDFHQPNF GASI KGGPREPW DIHSRLEGPIAWDVL+NFE
Sbjct: 368 RYDTPFHSLFRTLDTVHHDDFHQPNFTGASITKGGPREPWQDIHSRLEGPIAWDVLYNFE 427
Query: 360 QRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDA 419
QRW KQGGKD+LV LREL DIII PSPVM+ +DHD WNVQLFRSIDGGAA GFP++PE A
Sbjct: 428 QRWSKQGGKDILVKLRELSDIIITPSPVMFQEDHDVWNVQLFRSIDGGAAAGFPDSPEVA 487
Query: 420 ARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALH 479
A AGLVSGKDN+IDRSIQDAYIHAIRRAK+FIYIENQYFLGSSFAW+ADGI PE+INALH
Sbjct: 488 AEAGLVSGKDNVIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWAADGITPEDINALH 547
Query: 480 LIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQA 539
LIPKELSLKIV KIE GE+F VY+VVPMWPEG PES SVQAILDWQRRT++MMYKDV QA
Sbjct: 548 LIPKELSLKIVDKIEKGEKFRVYVVVPMWPEGIPESASVQAILDWQRRTLEMMYKDVTQA 607
Query: 540 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMM 599
LRA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAERP+ D+DY+RAQEARRFMIYVH+KMM
Sbjct: 608 LRAQGLEEDPRNYLTFFCLGNREVKKEGEYEPAERPDPDTDYMRAQEARRFMIYVHSKMM 667
Query: 600 IVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLG 659
IVDDEYII+GSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQ+HGFRMSLWYEHLG
Sbjct: 668 IVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQVHGFRMSLWYEHLG 727
Query: 660 MLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPG 719
MLD+TFL P S EC++KVN+IA++YWD YSSESLEHDLPGHLLRYPI V EG++TELPG
Sbjct: 728 MLDETFLDPSSLECIEKVNRIADKYWDFYSSESLEHDLPGHLLRYPISVDNEGNITELPG 787
Query: 720 TEFFPDTKARVLGTKSDYMPPVLTT 744
EFFPD+KAR+LG K DY+PP+LTT
Sbjct: 788 FEFFPDSKARILGNKVDYLPPILTT 812
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Brassica oleracea var. capitata (taxid: 3716) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q43007|PLDA1_ORYSJ Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/744 (79%), Positives = 680/744 (91%), Gaps = 1/744 (0%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
M+ E NPRWYESFHIYCAHMASN+IFTVK DNPIGAT IGRAY+PV+E+L GEE+D+W
Sbjct: 70 MITNEPINPRWYESFHIYCAHMASNVIFTVKIDNPIGATNIGRAYLPVQELLNGEEIDRW 129
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
++I D +R P+ SKIHVKLQYFDV+KDR+WARG+RS KYPGVP+TF+ QR+GCKV+LY
Sbjct: 130 LDICDNNREPVGE-SKIHVKLQYFDVSKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLY 188
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNF+P+IPLA GK YEPHRCWEDIFDAI+NA+H+IYITGWSVYTEI+LVRDS R
Sbjct: 189 QDAHVPDNFIPKIPLADGKNYEPHRCWEDIFDAISNAQHLIYITGWSVYTEITLVRDSNR 248
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LGELLKKKASEGVRV MLVWDDRTSV LLK+DGLMATHDEETE +F G+DV+
Sbjct: 249 PKPGGDVTLGELLKKKASEGVRVLMLVWDDRTSVGLLKRDGLMATHDEETENYFHGSDVN 308
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDD GS +QD+ IS MFTHHQKIVVVD +PN ++RRI+SFVGG+DLCDGR
Sbjct: 309 CVLCPRNPDDSGSIVQDLSISTMFTHHQKIVVVDHELPNQGSQQRRIVSFVGGLDLCDGR 368
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDT +HSLFRTLD+ HHDDFHQPNF ASI+KGGPREPWHDIHSRLEGPIAWDVL+NFEQ
Sbjct: 369 YDTQYHSLFRTLDSTHHDDFHQPNFATASIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQ 428
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ LR+L D IIPPSPVM+P+D +TWNVQLFRSIDGGAAFGFP+TPE+AA
Sbjct: 429 RWRKQGGKDLLLQLRDLSDTIIPPSPVMFPEDRETWNVQLFRSIDGGAAFGFPDTPEEAA 488
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
+AGLVSGKD IIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS+AW +GIKPE+I ALHL
Sbjct: 489 KAGLVSGKDQIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYAWKPEGIKPEDIGALHL 548
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKEL+LK+VSKIEAGERFTVY+VVPMWPEG PESGSVQAILDWQRRTM+MMY D+ +AL
Sbjct: 549 IPKELALKVVSKIEAGERFTVYVVVPMWPEGVPESGSVQAILDWQRRTMEMMYTDITEAL 608
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
+AKGI +P++YLTFFCLGNREVK++GEY+P E+PE D+DY RAQEARRFMIYVH KMMI
Sbjct: 609 QAKGIEANPKDYLTFFCLGNREVKQAGEYQPEEQPEADTDYSRAQEARRFMIYVHTKMMI 668
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+TR PARGQIHGFRM+LWYEHLGM
Sbjct: 669 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRMALWYEHLGM 728
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDD F +PES ECV+KVN+IAE+YWD+YSS+ L+ DLPGHLL YPIGV+ +G VTELPG
Sbjct: 729 LDDVFQRPESLECVQKVNRIAEKYWDMYSSDDLQQDLPGHLLSYPIGVASDGVVTELPGM 788
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
E+FPDT+ARVLG KSDYMPP+LT+
Sbjct: 789 EYFPDTRARVLGAKSDYMPPILTS 812
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q43270|PLDA1_MAIZE Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/744 (80%), Positives = 672/744 (90%), Gaps = 1/744 (0%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
M+ E NPRWYESFHIYCAHMA+++IFTVK DN IGA+LIGRAY+ V+++LGGEE+DKW
Sbjct: 70 MISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAYLAVQDLLGGEEIDKW 129
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
+EI DE+R P+ SKIHVKLQYFDV KDR+WARG+RS KYPGVP+TF+ QR+GCKV+LY
Sbjct: 130 LEISDENREPVGD-SKIHVKLQYFDVGKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLY 188
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNFVP I LA GK YEPHRCWEDIFDAI+ A+H+IYITGWSVYTEI+LVRD+ R
Sbjct: 189 QDAHVPDNFVPRIQLADGKNYEPHRCWEDIFDAISKAQHLIYITGWSVYTEITLVRDTNR 248
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LGELLK+KASEGVRV MLVWDDRTSV LLKKDGLMATHDEET +F GTDV+
Sbjct: 249 PKPGGDVTLGELLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETANYFHGTDVN 308
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDD GSF+QD+QIS MFTHHQKIVVVD MPN ++RRI+SF+GGIDLCDGR
Sbjct: 309 CVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPNQGSQQRRIVSFIGGIDLCDGR 368
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDT +HSLFRTLDT HHDDFHQPNF G SI+KGGPREPWHDIHSRLEGPIAWDVL+NFEQ
Sbjct: 369 YDTQYHSLFRTLDTVHHDDFHQPNFEGGSIKKGGPREPWHDIHSRLEGPIAWDVLYNFEQ 428
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+LV LR+L DIIIPPSPVM+P+D +TWNVQLFRSIDGGAAFGFPETPE+AA
Sbjct: 429 RWRKQGGKDLLVRLRDLPDIIIPPSPVMFPEDRETWNVQLFRSIDGGAAFGFPETPEEAA 488
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKD IIDRSIQDAY++AIRRAKNFIYIENQYFLGSS+ W +GIKPEEI ALHL
Sbjct: 489 RAGLVSGKDQIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSYGWKPEGIKPEEIGALHL 548
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVY+VVPMWPEG PES SVQAILDWQRRTM+MMY D+ QAL
Sbjct: 549 IPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQAL 608
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
A GI +P++YLTFFCLGNREVK+ GEYEP E PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 609 EANGIEANPKDYLTFFCLGNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMI 668
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMG YQPYHL+TR PARGQIHGFRMSLWYEHLGM
Sbjct: 669 VDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGM 728
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
L+D F +PES ECV+KVN++AE+YWDLYSS+ LE DLPGHLL YPIGV+ +G VTELPG
Sbjct: 729 LEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGM 788
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
E FPDT+ARVLG KSDY+PP+LTT
Sbjct: 789 ENFPDTRARVLGNKSDYLPPILTT 812
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Zea mays (taxid: 4577) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 744 | ||||||
| 169160465 | 802 | phospholipase D alpha [Citrus sinensis] | 1.0 | 0.927 | 0.994 | 0.0 | |
| 255553165 | 808 | phopholipase d alpha, putative [Ricinus | 1.0 | 0.920 | 0.875 | 0.0 | |
| 1698844 | 808 | phospholipase D [Ricinus communis] | 1.0 | 0.920 | 0.872 | 0.0 | |
| 2499710 | 808 | RecName: Full=Phospholipase D alpha 1; S | 1.0 | 0.920 | 0.872 | 0.0 | |
| 224134947 | 808 | predicted protein [Populus trichocarpa] | 1.0 | 0.920 | 0.869 | 0.0 | |
| 281494540 | 808 | phospholipase D [Jatropha curcas] | 1.0 | 0.920 | 0.866 | 0.0 | |
| 224059184 | 808 | predicted protein [Populus trichocarpa] | 1.0 | 0.920 | 0.865 | 0.0 | |
| 310780853 | 800 | phospholipase D alpha [Litchi chinensis] | 0.998 | 0.928 | 0.876 | 0.0 | |
| 325071291 | 800 | phospholipase D alpha [Dimocarpus longan | 0.998 | 0.928 | 0.872 | 0.0 | |
| 195984445 | 807 | phospholipase D alpha [Gossypium raimond | 0.998 | 0.920 | 0.869 | 0.0 |
| >gi|169160465|gb|ACA49723.1| phospholipase D alpha [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1541 bits (3990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/744 (99%), Positives = 741/744 (99%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEE LGGEEVDKW
Sbjct: 59 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEALGGEEVDKW 118
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY
Sbjct: 119 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 178
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR
Sbjct: 179 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 238
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGG I LGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH
Sbjct: 239 PKPGGGITLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 298
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR
Sbjct: 299 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 358
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 359 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 418
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 419 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 478
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL
Sbjct: 479 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 538
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL
Sbjct: 539 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 598
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSD+LRAQEARRFMIYVHAKMMI
Sbjct: 599 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMI 658
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM
Sbjct: 659 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 718
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT
Sbjct: 719 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 778
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLGTKSDYMPPVLTT
Sbjct: 779 EFFPDTKARVLGTKSDYMPPVLTT 802
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553165|ref|XP_002517625.1| phopholipase d alpha, putative [Ricinus communis] gi|223543257|gb|EEF44789.1| phopholipase d alpha, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1409 bits (3648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/744 (87%), Positives = 709/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ EQSNPRWYESFH+YCAH ASN+IFTVKDDNPIGATLIGRAYVPVEE+L GEE+D+W
Sbjct: 65 ILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLIGRAYVPVEELLDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NP+ SGSKIHVKLQYF+VTKDR+W +GIRS+KYPGVP+T++ QR+GCKVSLY
Sbjct: 125 VEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSSKYPGVPYTYFSQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PD FVP+IPLAGG YYEPHRCWED+FDAITNA+H+IYITGWSVYTEISL+RDSRR
Sbjct: 185 QDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE FFQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHFFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+SFVGG+DLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSFVGGLDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YD+PFHSLFRTLD+AHHDDFHQPNF GASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ LREL D+IIPPSPVMYPDD + WNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 425 RWRKQGGKDLLIQLRELEDVIIPPSPVMYPDDFEAWNVQLFRSIDGGAAFGFPETPEDAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSF WS DGIKPE+INALHL
Sbjct: 485 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKI+SKI AGERFTVYIVVPMWPEG PES SVQAILDWQ+RTM+MMYKD+VQAL
Sbjct: 545 IPKELSLKILSKIAAGERFTVYIVVPMWPEGIPESASVQAILDWQKRTMEMMYKDIVQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
+A GI+EDPRNYLTFFCLGNREVK+SGEYEPAE+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 605 KANGIIEDPRNYLTFFCLGNREVKKSGEYEPAEKPEPDTDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMG YQP+HLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHLSTRQPARGQIHGFRMSLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD++FL PES ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGT
Sbjct: 725 LDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1698844|gb|AAB37305.1| phospholipase D [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1404 bits (3634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/744 (87%), Positives = 707/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ EQSNPRWYESFH+YCAH ASN+IFTVKDDNPIGATLIGRAYVPVEE+L GEE+D+W
Sbjct: 65 ILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLIGRAYVPVEELLDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NP+ SGSKIHVKLQYF+VTKDR+W +GIRS+KYPGVP+T++ QR+GCKVSLY
Sbjct: 125 VEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSSKYPGVPYTYFSQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PD FVP+IPLAGG YYEPHRCWED+FDAITNA+H+IYITGWSVYTEISL+RDSRR
Sbjct: 185 QDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE FFQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVIMLVWDDRTSVGLLKKDGLMATHDEETEHFFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+SFVGG+DLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSFVGGLDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YD+PFHSLFRTLD+AHHDDFHQPNF GASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ LREL D+IIPPSPVMYPDD + WNVQLFRSIDGGAAFGFPETPEDA
Sbjct: 425 RWRKQGGKDLLIQLRELEDVIIPPSPVMYPDDFEAWNVQLFRSIDGGAAFGFPETPEDAP 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSF WS DGIKPE+INALHL
Sbjct: 485 EAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKI+SKI AGERFTVYIVVPMWPEG PES SVQAILDWQ+RTM+MMYKD+VQAL
Sbjct: 545 IPKELSLKILSKIAAGERFTVYIVVPMWPEGIPESASVQAILDWQKRTMEMMYKDIVQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
+A GI+EDPRNYLTFFCLGNREVK+SGEYEPAE+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 605 KANGIIEDPRNYLTFFCLGNREVKKSGEYEPAEKPEPDTDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMG YQP+HLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHLSTRQPARGQIHGFRMSLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD++FL PES ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGT
Sbjct: 725 LDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2499710|sp|Q41142.1|PLDA1_RICCO RecName: Full=Phospholipase D alpha 1; Short=PLD 1; AltName: Full=Choline phosphatase 1; AltName: Full=Phosphatidylcholine-hydrolyzing phospholipase D 1; Flags: Precursor gi|1438075|gb|AAB04095.1| phospholipase D [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1404 bits (3633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/744 (87%), Positives = 707/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ EQSNPRWYESFH+YCAH ASN+IFTVKDDNPIGATLIGRAYVPVEE+L GEE+D+W
Sbjct: 65 ILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLIGRAYVPVEELLDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NP+ SGSKIHVKLQYF+VTKDR+W +GIRS+KYPGVP+T++ QR+GCKVSLY
Sbjct: 125 VEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSSKYPGVPYTYFSQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PD FVP+IPLAGG YYEPHRCWED+FDAITNA+H+IYITGWSVYTEISL+RDSRR
Sbjct: 185 QDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE FFQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHFFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+SFVGG+DLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSFVGGLDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YD+PFHSLFRTLD+AHHDDFHQPNF GASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ LREL D+IIPPSPVMYPDD + WNVQLFRSIDGGAAFGFPETPEDA
Sbjct: 425 RWRKQGGKDLLIQLRELEDVIIPPSPVMYPDDFEAWNVQLFRSIDGGAAFGFPETPEDAP 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSF WS DGIKPE+INALHL
Sbjct: 485 EAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKI+SKI AGERFTVYIVVPMWPEG PES SVQAILDWQ+RTM+MMYKD+VQAL
Sbjct: 545 IPKELSLKILSKIAAGERFTVYIVVPMWPEGIPESASVQAILDWQKRTMEMMYKDIVQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
+A GI+EDPRNYLTFFCLGNREVK+SGEYEPAE+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 605 KANGIIEDPRNYLTFFCLGNREVKKSGEYEPAEKPEPDTDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMG YQP+HLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHLSTRQPARGQIHGFRMSLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD++FL PES ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGT
Sbjct: 725 LDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134947|ref|XP_002327529.1| predicted protein [Populus trichocarpa] gi|222836083|gb|EEE74504.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1401 bits (3626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/744 (86%), Positives = 708/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+KE +NPRW ESFHIYCAHMASNI+FTVKDDNPIGATLIGRAY+PV+E++ GEE+D+W
Sbjct: 65 ILEKEATNPRWNESFHIYCAHMASNIVFTVKDDNPIGATLIGRAYIPVQEIVDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VE+LDED+NPI S SKIHVKLQYFDVTKDR+W GIRSAKYPGVP+TFYPQR+GCKVSLY
Sbjct: 125 VEMLDEDKNPIQSSSKIHVKLQYFDVTKDRNWGGGIRSAKYPGVPYTFYPQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPD F+P+IPLA G++Y PHRCWED+FD+ITNA+H IYITGWSVYTEISLVRDSRR
Sbjct: 185 QDAHVPDKFIPKIPLASGEHYNPHRCWEDVFDSITNAKHFIYITGWSVYTEISLVRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV +L+WDDRTSV LLKKDGLMATHDEETE +FQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLILIWDDRTSVDLLKKDGLMATHDEETENYFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGS +QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+S+VGGIDLCDGR
Sbjct: 305 CVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSYVGGIDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNF GASI+KGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDTPFHSLFRTLDTAHHDDFHQPNFTGASIQKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW+KQGGKD+LV LREL D+IIPPSP M+PDDH+TWNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 425 RWKKQGGKDLLVQLRELEDVIIPPSPAMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
+AGLVSGKDNIIDRSIQDAY++AIRRAKNFIYIENQYFLGSSF+WSAD IKPE+INALHL
Sbjct: 485 KAGLVSGKDNIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSFSWSADDIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVY+VVPMWPEG PESGSVQAILDWQRRT++MMYKDV++AL
Sbjct: 545 IPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTLEMMYKDVIEAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKG+ EDPRNYLTFFCLGNREVK+SGEYEP+E+PE DSDY+RAQEARRFMIYVHAKMMI
Sbjct: 605 RAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDSDYIRAQEARRFMIYVHAKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+TR PARGQIHGFR+ LWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRLGLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDDTFL PES ECV KVNQI ++YWDLYSSE+LEHDLPGHLLRYPIGVS EG+VTELPGT
Sbjct: 725 LDDTFLHPESEECVTKVNQITDKYWDLYSSETLEHDLPGHLLRYPIGVSSEGNVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDYMPP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYMPPILTT 808
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|281494540|gb|ADA72022.1| phospholipase D [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 1397 bits (3617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/744 (86%), Positives = 710/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ E SNPRWYESFHIYCAH AS++IFTVKDDNPIGATLIGRAYVPVEE+L GEE+D+W
Sbjct: 65 ILENEHSNPRWYESFHIYCAHQASDVIFTVKDDNPIGATLIGRAYVPVEELLDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDE++NP+S GSKIHVKLQYFD++KDR+W RGIRS KYPGVP+TFY QR+GC+VSLY
Sbjct: 125 VEILDEEKNPVSGGSKIHVKLQYFDISKDRNWGRGIRSPKYPGVPYTFYSQRQGCRVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPD FVP+IPLAGGKYYEPHRCWED+FDAITNA+H+IYITGWSVYTEI+LVRDSRR
Sbjct: 185 QDAHVPDKFVPKIPLAGGKYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEITLVRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE FFQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHFFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGS +QD+QIS MFTHHQKIVVVDS +PNGD E+RRI+SFVGG+DLCDGR
Sbjct: 305 CVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPNGDSEKRRIVSFVGGLDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YD+PFHSLFRTLDTAHHDDFHQPNF GASI+KGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDSPFHSLFRTLDTAHHDDFHQPNFAGASIQKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKD+L+ +REL D+IIPPSPVM+PDD++TWNVQLFRSIDGGAAFGFP+TPEDAA
Sbjct: 425 RWRKQGGKDLLLPMRELEDVIIPPSPVMFPDDYNTWNVQLFRSIDGGAAFGFPDTPEDAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKDNIIDRSIQDAYI+AIRRAKNFIYIENQYFLGSSF WS DGIKPE+INALHL
Sbjct: 485 RAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFGWSPDGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVY+VVPMWPEG PESGSVQAILDWQRRT++MMYKD+VQAL
Sbjct: 545 IPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTVEMMYKDIVQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKGI EDPRNYLTFFC+GNREVKRSGEYEP+E+PE D+DY RAQ ARRFMIYVH+KMMI
Sbjct: 605 RAKGIEEDPRNYLTFFCIGNREVKRSGEYEPSEKPESDTDYERAQSARRFMIYVHSKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYII+GSANINQRSM+GARD+EIAMG YQPYHLSTR PARG+IHGFRM+LWYEHLGM
Sbjct: 665 VDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTRQPARGEIHGFRMALWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDD+FL PE+ +CV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIG++ EGDVTELPGT
Sbjct: 725 LDDSFLNPENEQCVRKVNQVAEKYWDLYSSETLEHDLPGHLLRYPIGITSEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059184|ref|XP_002299756.1| predicted protein [Populus trichocarpa] gi|222847014|gb|EEE84561.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/744 (86%), Positives = 707/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+L+ E +NPRWYESFHIYCAHMASN+IFTVKD NPIGATLIGRAY+PVEE+L GEE+D+W
Sbjct: 65 ILENEATNPRWYESFHIYCAHMASNVIFTVKDVNPIGATLIGRAYIPVEEILDGEEIDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILD D+NPI +GSKIHVKLQYFD+T D +W RGIR +KYPGVP+TFY QR+GC+VSLY
Sbjct: 125 VEILDGDKNPIRAGSKIHVKLQYFDITNDHNWGRGIRGSKYPGVPYTFYSQRQGCRVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PD F+P+IPLA G+YYEPHRCWED+FDAITNA+H+IYITGWSVYTEISLVRDSRR
Sbjct: 185 QDAHIPDKFIPKIPLASGEYYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGDI LGELLKKKASEGVRV ML+WDDRTSV LLK+DGLMATHDEETE +FQ TDVH
Sbjct: 245 PKPGGDITLGELLKKKASEGVRVLMLIWDDRTSVGLLKRDGLMATHDEETEHYFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
CILCPRNPDDGGS +QD+QIS MFTHHQKIVVVDS MPNGD +RRRI+S++GGIDLCDGR
Sbjct: 305 CILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSYIGGIDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNF GASI+KGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDTPFHSLFRTLDTAHHDDFHQPNFTGASIQKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW+KQGGKD+LV LREL D+IIPPSPV YPDDH+TWNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 425 RWKKQGGKDLLVQLRELEDVIIPPSPVTYPDDHETWNVQLFRSIDGGAAFGFPETPEDAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
+AGLVSGKDNIIDRSIQDAYI+AIRRAKNFIYIENQYFLGSSF WSADGIKPE+INALHL
Sbjct: 485 KAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFCWSADGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVY+VVPMWPEG PES SVQAILDWQRRTMDMMYKDV+QAL
Sbjct: 545 IPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMDMMYKDVIQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKG+ EDPRNYLTFFCLGNREVK+SGEYEP+E+PE DSDY+RAQEARRFMIYVHAKMMI
Sbjct: 605 RAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDSDYIRAQEARRFMIYVHAKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+TR PARGQIHGFR+ LWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRLGLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDDTFL+PE+ +C++KVNQIA++YWDLYSSE+LE DLPGHLLRYPIG+S EG+VTELPGT
Sbjct: 725 LDDTFLKPENEDCIRKVNQIADKYWDLYSSETLEGDLPGHLLRYPIGISSEGNVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
E+FPDTKARVLG KSDYMPP+LTT
Sbjct: 785 EYFPDTKARVLGAKSDYMPPILTT 808
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|310780853|gb|ADP23922.1| phospholipase D alpha [Litchi chinensis] | Back alignment and taxonomy information |
|---|
Score = 1393 bits (3605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/744 (87%), Positives = 709/744 (95%), Gaps = 1/744 (0%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
+++K+ +NPRWYESFHIYCAHMAS++IFTVKDDN +GA+LIGRA+VPVEE+LGGEEVDKW
Sbjct: 58 IIEKDHANPRWYESFHIYCAHMASDVIFTVKDDNAVGASLIGRAHVPVEEILGGEEVDKW 117
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VE+LDE +NPI +GSKIHVKLQYFDVTKDR+++RG+ SAKYPGVPFTF+ QR GCKVSLY
Sbjct: 118 VELLDEHKNPIEAGSKIHVKLQYFDVTKDRNFSRGLISAKYPGVPFTFFAQRHGCKVSLY 177
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNF+P+IPLAGGK Y+PHRCWEDIFDAITNA+H+IYITGWSVYTEISLVRDSRR
Sbjct: 178 QDAHVPDNFIPKIPLAGGKNYQPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRR 237
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LG LLKKKASEGVR CMLVWDDRTSV LLKKDGLMATHDEETE+FF+ T+V+
Sbjct: 238 PKPGGDVTLGNLLKKKASEGVRFCMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTEVN 297
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD QI+ MFTHHQKIVVVDS +PNGD ERRRI+SFVGGIDLCDGR
Sbjct: 298 CVLCPRNPDDGGSFVQDFQIATMFTHHQKIVVVDSELPNGDSERRRIVSFVGGIDLCDGR 357
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDT FHSLFRTLDTAHHDDFHQPNF GASI KGGPREPWHDIHSRLEGPIAWDVL+NFEQ
Sbjct: 358 YDTAFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLYNFEQ 417
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKDVLV LR+LGD IIPPSPVM+PDDH+TWNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 418 RWRKQGGKDVLVQLRDLGD-IIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAA 476
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
+AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS+AWSAD IKPE+INALHL
Sbjct: 477 KAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYAWSADDIKPEDINALHL 536
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGERFTVY+VVPMWPEG PESGSVQAILDWQRRTMDMMYKDVVQAL
Sbjct: 537 IPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTMDMMYKDVVQAL 596
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKG EDPRNYLTFFCLGNREVK SGEYEP+E PE DSDY+RAQEARRFMIYVH KMMI
Sbjct: 597 RAKGSTEDPRNYLTFFCLGNREVKMSGEYEPSETPEPDSDYIRAQEARRFMIYVHTKMMI 656
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRM+LWYEHLGM
Sbjct: 657 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMALWYEHLGM 716
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
L++TFLQP+S ECV+KVNQIA++YWDLYSSESLE DLPGHLLRYPIG+S +GDVTELPG
Sbjct: 717 LNETFLQPDSLECVQKVNQIADKYWDLYSSESLERDLPGHLLRYPIGISSDGDVTELPGA 776
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
+FFPDTKARVLGTKSDYMPP+LTT
Sbjct: 777 QFFPDTKARVLGTKSDYMPPILTT 800
|
Source: Litchi chinensis Species: Litchi chinensis Genus: Litchi Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325071291|gb|ADY75750.1| phospholipase D alpha [Dimocarpus longan] | Back alignment and taxonomy information |
|---|
Score = 1389 bits (3595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/744 (87%), Positives = 706/744 (94%), Gaps = 1/744 (0%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
++ K+ +NPRWYESFHIYCAHMAS++IFTVKDDN +GA+LIGRA+VPVEE+LGGEEVDKW
Sbjct: 58 IIGKDHANPRWYESFHIYCAHMASDVIFTVKDDNAVGASLIGRAHVPVEEILGGEEVDKW 117
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VE+LDE +NPI +GSKIHVKLQYFD+ KDR+++RG+ SAKYPGVPFTF+ QR GCKVSLY
Sbjct: 118 VELLDEHKNPIEAGSKIHVKLQYFDIRKDRNFSRGLISAKYPGVPFTFFTQRHGCKVSLY 177
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPDNF+P+IPLAGGK Y+PHRCWEDIFDAITNA+H+IYITGWSVYTEISLVRDSRR
Sbjct: 178 QDAHVPDNFIPKIPLAGGKNYQPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRR 237
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LG LLKKKASEG RVCMLVWDDRTSV LLKKDGLMATHDEETE+FF+ TDV+
Sbjct: 238 PKPGGDVTLGNLLKKKASEGARVCMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVN 297
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+QD+QI+ MFTHHQKIVVVDS +PNGD ERRRI+SFVGGIDLCDGR
Sbjct: 298 CVLCPRNPDDGGSFVQDLQIATMFTHHQKIVVVDSELPNGDSERRRIVSFVGGIDLCDGR 357
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDT FHSLFRTLDTAHHDDFHQPNF GASI KGGPREPWHDIHSRLEGPIAWDVL+NFEQ
Sbjct: 358 YDTAFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLYNFEQ 417
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWRKQGGKDVLV LR+LGD IIPPSPVM+PDDH+TWNVQLFRSIDGGAAFGFPETPEDAA
Sbjct: 418 RWRKQGGKDVLVQLRDLGD-IIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAA 476
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
+AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS+AWSAD IKPE+INALH+
Sbjct: 477 KAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYAWSADDIKPEDINALHI 536
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEA ERFTVY+VVPMWPEG PESGSVQAILDWQRRTMDMMYKDVVQAL
Sbjct: 537 IPKELSLKIVSKIEAEERFTVYVVVPMWPEGIPESGSVQAILDWQRRTMDMMYKDVVQAL 596
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKG EDPRNYLTFFCLGNREVK SGEYEP+E PE DSDY++AQEARRFMIYVH KMMI
Sbjct: 597 RAKGSTEDPRNYLTFFCLGNREVKMSGEYEPSETPEPDSDYIKAQEARRFMIYVHTKMMI 656
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRM+LWYEHLGM
Sbjct: 657 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMALWYEHLGM 716
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
+ FLQPES ECV+KVNQIA++YWDLYSSESLE DLPGHLLRYPIG+SG+GDVTELPGT
Sbjct: 717 FSENFLQPESLECVRKVNQIADKYWDLYSSESLERDLPGHLLRYPIGISGDGDVTELPGT 776
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LGTKSDYMPP+LTT
Sbjct: 777 EFFPDTKARILGTKSDYMPPILTT 800
|
Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195984445|gb|ACG63795.1| phospholipase D alpha [Gossypium raimondii] gi|196166537|gb|ACG70839.1| phospholipase D alpha [Gossypium raimondii] gi|257815665|gb|ACV70145.1| phospholipase D [Gossypium raimondii] gi|291192055|gb|ADD83101.1| PLDalpha [Gossypium hirsutum] gi|291192056|gb|ADD83102.1| PLDalpha [Gossypium hirsutum] gi|291192058|gb|ADD83103.1| PLDalpha isoform 1 [Gossypium hirsutum] gi|291192062|gb|ADD83105.1| PLDalpha isoform 2 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1379 bits (3570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/743 (86%), Positives = 699/743 (94%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
++ E SNPRW+ESFHIYCAH ASN++FTVKDDNPIGATLIGRAYVPV+++ G+EVD+WV
Sbjct: 65 IENETSNPRWFESFHIYCAHNASNVVFTVKDDNPIGATLIGRAYVPVKDLTEGDEVDRWV 124
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILDED+NPI SG KIHVKLQYF VTKDR+W RGI S K+PGVP+TFYPQRKGCKVSLYQ
Sbjct: 125 EILDEDKNPIKSGGKIHVKLQYFGVTKDRNWDRGIVSRKFPGVPYTFYPQRKGCKVSLYQ 184
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+PD FVP+IPLAGGK YEPHRCWEDIFDAITNA+HMIYITGWSVYTEISLVRDSRRP
Sbjct: 185 DAHIPDGFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHMIYITGWSVYTEISLVRDSRRP 244
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGDI +GELLKKKASEGVRV MLVWDDRTSV LLKKDGLMATHDEETE+FF+ TDV+C
Sbjct: 245 KPGGDITIGELLKKKASEGVRVNMLVWDDRTSVGLLKKDGLMATHDEETEQFFKDTDVNC 304
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301
+LCPRNPDDGGSF+Q++QIS MFTHHQKIVVVD+ MPNGDPE+RRI+SFVGGIDLCDGRY
Sbjct: 305 VLCPRNPDDGGSFVQELQISTMFTHHQKIVVVDAAMPNGDPEKRRIVSFVGGIDLCDGRY 364
Query: 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 361
DTPFHSLFRTLDTAHHDDFHQPNF ASI KGGPREPWHDIHSRLEGPIAWDVLFNFEQR
Sbjct: 365 DTPFHSLFRTLDTAHHDDFHQPNFTDASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 424
Query: 362 WRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAAR 421
WR+QGGKDVL+ LREL D+IIPPSPV +PDDH+TWNVQLFRSIDGGAAFGFPETPEDAAR
Sbjct: 425 WRRQGGKDVLLQLRELEDVIIPPSPVAFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAR 484
Query: 422 AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLI 481
AGLVSGKDNIIDRSIQDAYI+AIRRAKNFIYIENQYFLGSSF WS D IKPE+INALHLI
Sbjct: 485 AGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFGWSPDDIKPEDINALHLI 544
Query: 482 PKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALR 541
PKELSLKIVSKIEAGERFTVY+VVPMWPEG PES SVQAILDWQRRTMDMMYKDV+QALR
Sbjct: 545 PKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESASVQAILDWQRRTMDMMYKDVIQALR 604
Query: 542 AKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIV 601
AKG E+PRNYLTFFCLGNREVK+SGEYEP+ERP+ D+DY RAQEARRFMIYVHAKMMIV
Sbjct: 605 AKGSDENPRNYLTFFCLGNREVKKSGEYEPSERPDPDTDYARAQEARRFMIYVHAKMMIV 664
Query: 602 DDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGML 661
DDEYIIIGSANINQRSM+GARD+EIAMG YQPYHLS R PARGQ+HGFR+SLWYEHLGML
Sbjct: 665 DDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLSLREPARGQVHGFRLSLWYEHLGML 724
Query: 662 DDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTE 721
DDTFL PES ECV+KVNQ+A++YWDLYSSESLE DLPGHLLRYPIGVS +G VTELPG E
Sbjct: 725 DDTFLAPESEECVRKVNQVADKYWDLYSSESLERDLPGHLLRYPIGVSSDGSVTELPGIE 784
Query: 722 FFPDTKARVLGTKSDYMPPVLTT 744
FFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 FFPDTKARVLGAKSDYLPPILTT 807
|
Source: Gossypium raimondii Species: Gossypium raimondii Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 744 | ||||||
| UNIPROTKB|P86387 | 808 | PLD1 "Phospholipase D alpha 1" | 1.0 | 0.920 | 0.834 | 0.0 | |
| TAIR|locus:2093227 | 810 | PLDALPHA1 "phospholipase D alp | 0.998 | 0.917 | 0.822 | 0.0 | |
| TAIR|locus:2035211 | 810 | PLDALPHA2 "phospholipase D alp | 0.998 | 0.917 | 0.814 | 0.0 | |
| TAIR|locus:2145452 | 820 | PLDALPHA3 "phospholipase D alp | 0.987 | 0.896 | 0.623 | 8.3e-264 | |
| TAIR|locus:2064607 | 1083 | PLDBETA1 "phospholipase D beta | 0.959 | 0.659 | 0.477 | 8.2e-186 | |
| TAIR|locus:2126001 | 927 | PLDBETA2 "phospholipase D beta | 0.959 | 0.770 | 0.467 | 3.3e-182 | |
| TAIR|locus:2137035 | 866 | PLDGAMMA3 "phospholipase D gam | 0.958 | 0.823 | 0.467 | 1.7e-178 | |
| TAIR|locus:2137045 | 858 | PLDGAMMA1 "phospholipase D gam | 0.958 | 0.831 | 0.466 | 9.3e-178 | |
| TAIR|locus:2125314 | 868 | PLDDELTA "phospholipase D delt | 0.522 | 0.448 | 0.480 | 1.8e-172 | |
| TAIR|locus:2137025 | 856 | PLDGAMMA2 "phospholipase D gam | 0.961 | 0.835 | 0.444 | 1.5e-163 |
| UNIPROTKB|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)] | Back alignment and assigned GO terms |
|---|
Score = 3460 (1223.0 bits), Expect = 0., P = 0.
Identities = 621/744 (83%), Positives = 685/744 (92%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKW 60
++K E +NP+WYESFHIYCAHMASN++FTVKDDNPIGATLIGRAY D+W
Sbjct: 65 IIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEELIRGDQVDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILDED+NPI SKIHVKLQ+FDV KD +W GI+ A+Y GVP+TFY QR+GC+VSLY
Sbjct: 125 VEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKGARYLGVPYTFYSQRRGCRVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAHVPD F+P+IPLAGGKYYEPHRCWED+FDAITNARH+IYITGWSVYTEI+L+RDSRR
Sbjct: 185 QDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYITGWSVYTEITLIRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ LGELLK+KASEGV+V MLVWDDRTSV LLKKDGLMATHDEET +FQ TDVH
Sbjct: 245 PKPGGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETANYFQNTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
C+LCPRNPDDGGSF+Q +QIS MFTHHQKIVVVD MP+G+ + RRI+SFVGGIDLCDGR
Sbjct: 305 CVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGESQMRRIVSFVGGIDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNF G+SI KGGPREPWHDIHSRLEGP+AWDVLFNFEQ
Sbjct: 365 YDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHDIHSRLEGPVAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RWR+QGGKDVLV+LREL +IIIPPSPVM+PDDH+TWNVQLFRSIDGGAAFGFPETPE+AA
Sbjct: 425 RWRQQGGKDVLVNLRELDNIIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEEAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
RAGLVSGKDNIIDRSIQDAYI+AIRRAKNFIYIENQYFLGSSF WS+D IK E+INALHL
Sbjct: 485 RAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFDWSSDDIKREDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIE GERFTVY+VVPMWPEG PES SVQAILDWQRRTM+MMYKD++QAL
Sbjct: 545 IPKELSLKIVSKIERGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAK EDPRNYLTFFCLGNREVK+SGEYEP+ERPEDDSDY+RAQEARRFMIYVH KMMI
Sbjct: 605 RAKDREEDPRNYLTFFCLGNREVKKSGEYEPSERPEDDSDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYII+GSANINQRSM+GARD+EIAMG YQPYHL+ PARGQIHGFRM+LWYEHLGM
Sbjct: 665 VDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLTINQPARGQIHGFRMALWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LDDTFL+PE+ ECV+KVN++A +YWDLY+SE LEHDLPGHLLRYPIGVS EGDVTELPGT
Sbjct: 725 LDDTFLEPENIECVQKVNRVAGKYWDLYASELLEHDLPGHLLRYPIGVSSEGDVTELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
|
| TAIR|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3400 (1201.9 bits), Expect = 0., P = 0.
Identities = 612/744 (82%), Positives = 677/744 (90%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWV 61
+K E NP+WYESFHIYCAH+AS+IIFTVKDDNPIGATLIGRAY D+WV
Sbjct: 67 IKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAYIPVDQVINGEEVDQWV 126
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
EILD DRNPI GSKIHVKLQYF V +DR+W GI+SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 127 EILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKSAKFPGVPYTFFSQRQGCKVSLYQ 186
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+PDNFVP IPLAGGK YEP RCWEDIFDAI+NA+H+IYITGWSVY EI+LVRDSRRP
Sbjct: 187 DAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYITGWSVYAEIALVRDSRRP 246
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
KPGGD+ +GELLKKKASEGVRV +LVWDDRTSV +LKKDGLMATHDEETE FF+G+DVHC
Sbjct: 247 KPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVLKKDGLMATHDEETENFFRGSDVHC 306
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPN-GDPERRRIMSFVGGIDLCDGR 300
ILCPRNPDDGGS +Q +QIS MFTHHQKIVVVDS MP+ G E RRI+SFVGGIDLCDGR
Sbjct: 307 ILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRGGSEMRRIVSFVGGIDLCDGR 366
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDT HHDDFHQPNF GA+I KGGPREPWHDIHSRLEGPIAWDV++NFEQ
Sbjct: 367 YDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVMYNFEQ 426
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW KQGGKD+LV LR+L DIII PSPVM+ +DHD WNVQLFRSIDGGAA GFPE+PE AA
Sbjct: 427 RWSKQGGKDILVKLRDLSDIIITPSPVMFQEDHDVWNVQLFRSIDGGAAAGFPESPEAAA 486
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIY+ENQYFLGSSFAW+ADGI PE+INALHL
Sbjct: 487 EAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYVENQYFLGSSFAWAADGITPEDINALHL 546
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIE GE+F VY+VVPMWPEG PESGSVQAILDWQRRTM+MMYKDV+QAL
Sbjct: 547 IPKELSLKIVSKIEKGEKFRVYVVVPMWPEGLPESGSVQAILDWQRRTMEMMYKDVIQAL 606
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAE+P+ D+DY+RAQEARRFMIYVH KMMI
Sbjct: 607 RAQGLEEDPRNYLTFFCLGNREVKKDGEYEPAEKPDPDTDYMRAQEARRFMIYVHTKMMI 666
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQIHGFRMSLWYEHLGM
Sbjct: 667 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQIHGFRMSLWYEHLGM 726
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL P S EC++KVN+I+++YWD YSSESLEHDLPGHLLRYPIGV+ EGD+TELPG
Sbjct: 727 LDETFLDPSSLECIEKVNRISDKYWDFYSSESLEHDLPGHLLRYPIGVASEGDITELPGF 786
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct: 787 EFFPDTKARILGTKSDYLPPILTT 810
|
|
| TAIR|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3389 (1198.0 bits), Expect = 0., P = 0.
Identities = 606/744 (81%), Positives = 679/744 (91%)
Query: 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWV 61
+ KE NP+W+ESFHIYC HMA ++IFTVKD NPIGATLIGR Y D+WV
Sbjct: 67 ITKEPKNPKWFESFHIYCGHMAKHVIFTVKDANPIGATLIGRGYIPVEDILHGEEVDRWV 126
Query: 62 EILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQ 121
+ILD ++NPI+ GSKIHVKLQYF V KD++W RGI+SAK+PGVP+TF+ QR+GCKVSLYQ
Sbjct: 127 DILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKSAKFPGVPYTFFSQRRGCKVSLYQ 186
Query: 122 DAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP 181
DAH+P NFVP+IPLAGGK YEPHRCWEDIFDAITNA+H+IYITGWSVYTEISLVRDSRRP
Sbjct: 187 DAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRP 246
Query: 182 KPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 241
K GGD+ +GELLKKKASEGV+V +LVWDDRTSV LLKKDGLMATHDEETE FF+GTDV+C
Sbjct: 247 KQGGDVTVGELLKKKASEGVKVILLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVNC 306
Query: 242 ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301
ILCPRNPDDGGS +Q++QIS MFTHHQKIVVVDS MP+G RRI+SFVGG+DLCDGRY
Sbjct: 307 ILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGGSRSRRIVSFVGGLDLCDGRY 366
Query: 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQR 361
DTPFHSLFRTLDTAHHDDFHQPNF GA+I KGGPREPWHDIH RLEGPIAWDVL+NFEQR
Sbjct: 367 DTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHDIHCRLEGPIAWDVLYNFEQR 426
Query: 362 WRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAAR 421
W +QGGKD+LV +RELGDIIIPPSPV++ +DHD WNVQLFRSIDGGAA GFP++PE AA
Sbjct: 427 WSRQGGKDILVKMRELGDIIIPPSPVLFSEDHDVWNVQLFRSIDGGAAAGFPDSPEAAAE 486
Query: 422 AGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLI 481
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIYIENQYFLGSSFAWSADGIKPEEINALHLI
Sbjct: 487 AGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEEINALHLI 546
Query: 482 PKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALR 541
PKELSLKIVSKI+AGE+F VY+VVPMWPEG PESGSVQAILDWQ+RTM+MMYKDV++ALR
Sbjct: 547 PKELSLKIVSKIKAGEKFKVYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYKDVIKALR 606
Query: 542 AKGIM-EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
G+ EDPR+YLTFFCLGNREVK+ GEYEP+E+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 607 ENGLEGEDPRDYLTFFCLGNREVKKDGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMI 666
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 667 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMSLWYEHLGM 726
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL P S EC++KVN++A++YWDLYSSESLEHDLPGHLLRYPIG++ EG++TELPG
Sbjct: 727 LDETFLDPSSQECIQKVNRVADKYWDLYSSESLEHDLPGHLLRYPIGIASEGNITELPGC 786
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKAR+LG KSDYMPP+LTT
Sbjct: 787 EFFPDTKARILGVKSDYMPPILTT 810
|
|
| TAIR|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2538 (898.5 bits), Expect = 8.3e-264, P = 8.3e-264
Identities = 463/743 (62%), Positives = 578/743 (77%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
+P+W +SFH+Y AH S IIFTVK+D P+ A+LIGRAY D+W++ILDE+
Sbjct: 80 HPKWLQSFHVYTAHSISKIIFTVKEDEPVSASLIGRAYLPVTEVITGQPIDRWLDILDEN 139
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPD 127
R PI GSK+HV++++ VT+D +W +GI + GVP ++ QR+GCKV+LYQDAHV +
Sbjct: 140 RRPIQGGSKLHVRVKFTHVTQDVNWNKGIILPSFNGVPNAYFNQREGCKVTLYQDAHVLN 199
Query: 128 NFVPEIPLAGGKY-YEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
+ P++ L GG+ Y+ HRCWE+IFDAI A+H+IYI GWSV T+++LVRD +R +PGGD
Sbjct: 200 EY-PDVTLTGGQVIYKHHRCWEEIFDAIWEAKHLIYIAGWSVNTDVTLVRDPKRTRPGGD 258
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPR 246
+ LGELLKKKA E V V MLVWDDRTS + K+DGLM THD+ET +F+ T V C+LCPR
Sbjct: 259 LKLGELLKKKAEENVTVLMLVWDDRTSHEVFKRDGLMMTHDQETYDYFKNTKVRCVLCPR 318
Query: 247 NPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFH 306
NPD+G S +Q +++ MFTHHQK +VVDS + +G +RRI+SF+GGIDLCDGRYDT H
Sbjct: 319 NPDNGDSIVQGFEVATMFTHHQKTIVVDSEV-DGSLTKRRIVSFLGGIDLCDGRYDTVEH 377
Query: 307 SLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQG 366
LF TL++ H +DFHQPNF GASI+KGGPREPWHDIH +L+GP AWDVL+NFEQRW KQG
Sbjct: 378 PLFGTLNSVHANDFHQPNFDGASIKKGGPREPWHDIHCKLDGPAAWDVLYNFEQRWMKQG 437
Query: 367 -GKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLV 425
G+ L+ + +L +I +PP P++ PD+ + W VQ+FRSID GA GFPE P +AA GL+
Sbjct: 438 SGRRYLISMAQLAEITVPPLPIVQPDNEEGWTVQVFRSIDDGAVEGFPEDPREAASIGLI 497
Query: 426 SGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKEL 485
SGKDN+I+RSIQDAY++AIRRAKNFIYIENQYFLGSSF W++ I EINAL LIPKE+
Sbjct: 498 SGKDNVIERSIQDAYVNAIRRAKNFIYIENQYFLGSSFGWNSRDINLNEINALQLIPKEI 557
Query: 486 SLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGI 545
SLKIVSKIEAGERF+VYIV+P+WPEG P S SVQAILDWQRRTM+MMY D++ ALR KG+
Sbjct: 558 SLKIVSKIEAGERFSVYIVIPLWPEGKPGSASVQAILDWQRRTMEMMYTDIIIALRKKGL 617
Query: 546 MEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEY 605
+PR+YLTFFCLGNRE + GEY P E+PE +SDY RAQE+RRFMIYVH+KMMIVDDEY
Sbjct: 618 DANPRDYLTFFCLGNREKGKVGEYLPPEKPEANSDYARAQESRRFMIYVHSKMMIVDDEY 677
Query: 606 IIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPAR--GQIHGFRMSLWYEHLGMLDD 663
IIIGSANINQRSM+G RDTEIAMG YQP HL + R GQI FR+SLW EHL + +
Sbjct: 678 IIIGSANINQRSMDGGRDTEIAMGAYQPSHLLSTNNMRPVGQIFSFRISLWLEHLRVTTN 737
Query: 664 TFLQPESSECVKKVNQIAERYWDLYSSESLEH--DLPGHLLRYPIGVSGEGDVTELPGTE 721
F PES EC++ VN A+ W LYS++ DLPGHLL YPI + G+VT L GTE
Sbjct: 738 AFQCPESEECIRMVNATADELWGLYSAQEYPRNDDLPGHLLSYPISIGSNGEVTNLAGTE 797
Query: 722 FFPDTKARVLGTKSDYMPPVLTT 744
FFPDT A+V+G KS+Y+PP+LT+
Sbjct: 798 FFPDTNAKVVGEKSNYLPPILTS 820
|
|
| TAIR|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1802 (639.4 bits), Expect = 8.2e-186, P = 8.2e-186
Identities = 356/746 (47%), Positives = 487/746 (65%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
NP W + F++ AH A+ + F VKD + +G+ LIG + IL+ +
Sbjct: 340 NPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSN 399
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIRSAK-YPGVPFTFYPQRKGCKVSLYQDAHVP 126
P G+ + + +QY + K + G+ + Y GVP T++P RKG V LYQDAHVP
Sbjct: 400 GKPCKPGANLSLSIQYTPMDKLSVYHHGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVP 459
Query: 127 DNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
+ +P I L G YE +CW D+FDAI AR +IYITGWSV+ ++ L+RD + P +
Sbjct: 460 EGMLPGIRLDNGMSYEHGKCWHDMFDAIRQARRLIYITGWSVWHKVKLIRD--KLGPASE 517
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSLL--KKDGLMATHDEETEKFFQGTDVHCILC 244
LGELL+ K+ EGVRV +L+WDD TS S+L K DG+MATHDEET +FF+ + V +LC
Sbjct: 518 CTLGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLC 577
Query: 245 PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304
PRN S+++ ++ ++THHQK V+VD+ G+ RR+I++FVGG+DLCDGRYDTP
Sbjct: 578 PRNAGKRHSWVKQREVGTIYTHHQKNVIVDADA-GGN--RRKIIAFVGGLDLCDGRYDTP 634
Query: 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRK 364
H LFRTL T H DDFH P F G G PREPWHD+HS+++GP A+DVL NFE+RW K
Sbjct: 635 QHPLFRTLQTIHKDDFHNPTFTGNL--SGCPREPWHDLHSKIDGPAAYDVLTNFEERWLK 692
Query: 365 ----QGGK-------DVLVHLRELGDII-IPPSPVMYPDDHDTWNVQLFRSIDGGAAFGF 412
G K D L+ + + DI+ + +P + +D + W+VQ+FRSID + GF
Sbjct: 693 AAKPSGIKKFKTSYDDALLRIDRIPDILGVSDTPTVSENDPEAWHVQIFRSIDSNSVKGF 752
Query: 413 PETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKP 472
P+ P+DA LV GK+ +ID SI AY+ AIR A++FIYIENQYF+GSS+ W+A
Sbjct: 753 PKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWNAH---- 808
Query: 473 EEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMM 532
++I A +LIP E++LKI KI A ERF YIV+PMWPEG P + Q IL WQ +T+ MM
Sbjct: 809 KDIGANNLIPMEIALKIAEKIRANERFAAYIVIPMWPEGVPTGAATQRILYWQHKTIQMM 868
Query: 533 YKDVVQALRAKGIME--DPRNYLTFFCLGNREVKRSGEYEPAERPED-DSDYLRAQEARR 589
Y+ + +AL G+ P++YL FFCLGNRE+ + P + ++ ++++RR
Sbjct: 869 YETIYKALVETGLEGAFSPQDYLNFFCLGNREMVDGIDNSGTGSPSNANTPQALSRKSRR 928
Query: 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPA--RGQIH 647
FM+YVH+K M+VDDEY++IGSANINQRSMEG RDTEIAMG YQP H R + RGQI+
Sbjct: 929 FMVYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTEIAMGAYQPQHTWARKHSGPRGQIY 988
Query: 648 GFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIG 707
G+RMSLW EH+ LDD F QPES ECV+KV + ER W +++E + D+ GHLL+YP+
Sbjct: 989 GYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFAAEEVS-DMRGHLLKYPVE 1047
Query: 708 VSGEGDVTELPGTEFFPDTKARVLGT 733
V +G V LPG+E FPD ++G+
Sbjct: 1048 VDRKGKVRPLPGSETFPDVGGNIVGS 1073
|
|
| TAIR|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
Identities = 349/746 (46%), Positives = 483/746 (64%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
NP W + F++ AH A+ + F VKD + +G+ LIG + I D +
Sbjct: 184 NPVWQQHFYVPVAHHAAEVHFVVKDSDAVGSQLIGIVTIPVEQIYSGARIEGTYSIRDSN 243
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKY-PGVPFTFYPQRKGCKVSLYQDAHVP 126
P G+ + + +QY + K + G+ + Y GVP T++P R+G V+LYQDAHVP
Sbjct: 244 GKPCKPGATLSLSIQYTSMNKLSVYHSGVGAGPYYQGVPGTYFPLREGGSVTLYQDAHVP 303
Query: 127 DNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
+ +P I L G YE +CW D+F AI AR +IYITGWSV+ + LVRD + P +
Sbjct: 304 EGMLPGIKLGNGMCYEHGKCWHDMFHAICQARRLIYITGWSVWHNVRLVRD--KEDPSSE 361
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSLL--KKDGLMATHDEETEKFFQGTDVHCILC 244
LGELL+ K+ EGVRV +LVWDD TS ++L DG+M THDEET +FF+ + V +LC
Sbjct: 362 CRLGELLRSKSQEGVRVLLLVWDDPTSQNILGYMTDGVMGTHDEETRRFFKDSSVQVLLC 421
Query: 245 PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304
PRN S+++ ++ ++THHQK ++VD+ G+ RR+I++FVGG+DLCDGRYDTP
Sbjct: 422 PRNAGKRHSWVKQREVGTIYTHHQKNLIVDADA-GGN--RRKIVAFVGGLDLCDGRYDTP 478
Query: 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRK 364
H LFRTL T H+ D+H P F G ++ G PREPWHD+HS+++GP A+DVL NFE+RW K
Sbjct: 479 QHPLFRTLQTDHNGDYHNPTFTG-NVS-GCPREPWHDLHSKIDGPAAYDVLTNFEERWLK 536
Query: 365 QG-----GK------DVLVHLRELGDII-IPPSPVMYPDDHDTWNVQLFRSIDGGAAFGF 412
K D L+ + + DI+ + +P + +D + W+VQ+FRSID + GF
Sbjct: 537 AAKPHRINKLKTSYDDALLRIDRIPDILRVLDAPTVSANDPEAWHVQIFRSIDSNSVKGF 596
Query: 413 PETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKP 472
P+ P+ A LV GK+ +ID SI AY+ AIR A++FIYIENQYF+GSS+ W+A
Sbjct: 597 PKDPKYATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYDWNAH---- 652
Query: 473 EEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMM 532
++I A +LIP E++LKI KI A ERF YIV+PMWPEG P + Q IL WQ +TM MM
Sbjct: 653 KDIGANNLIPMEIALKIADKIRAKERFAAYIVIPMWPEGVPTGAATQRILYWQHKTMQMM 712
Query: 533 YKDVVQALRAKGIMED--PRNYLTFFCLGNRE-VKRSGEYEPAERPEDDSDYLRAQEARR 589
Y + AL G+ ++ P++YL FFCLGNRE V + E +++ +++RR
Sbjct: 713 YGTIYNALVEAGLEDEYSPQDYLNFFCLGNREMVNGNNESGTGSASNENTPQGLCRKSRR 772
Query: 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPA--RGQIH 647
FMIYVH+K M+VDDEY++IGSANINQRSMEG RDTEIAMG YQP H R + RGQI+
Sbjct: 773 FMIYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTEIAMGAYQPQHTWARRQSGPRGQIY 832
Query: 648 GFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIG 707
G+RMSLW EH+ +LDD F++PES CV+KV +AE W+ + SE + ++ GHL++YP+
Sbjct: 833 GYRMSLWAEHMALLDDCFVEPESLGCVRKVRTVAEENWEQFRSEEVS-EMRGHLMKYPVE 891
Query: 708 VSGEGDVTELPGTEFFPDTKARVLGT 733
V +G V LPG+E FPD V+G+
Sbjct: 892 VDRKGKVRPLPGSEEFPDVGGNVVGS 917
|
|
| TAIR|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
Identities = 352/753 (46%), Positives = 489/753 (64%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
NP W + F + AH A+ + F VKD + IG+ +IG + IL+
Sbjct: 117 NPVWMQHFDVPVAHSAAKVHFVVKDSDIIGSQIIGAVEIPTEQLCSGNRIEGLFPILNSR 176
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIR-SAKYPGVPFTFYPQRKGCKVSLYQDAHVP 126
P G+ + + +QY + + R + +G+ + GVP T++P RKG +V+LYQDAHV
Sbjct: 177 GKPCKQGAVLSLSIQYIPMERMRLYQKGVGFGVECVGVPGTYFPLRKGGRVTLYQDAHVD 236
Query: 127 DNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
D +P + L GG Y +CWED+ DAI AR +IYITGWSV+ + LVR + P G
Sbjct: 237 DGTLPSVHLDGGIQYRHGKCWEDMADAIRRARRLIYITGWSVFHPVRLVRRNNDPTQG-- 294
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSLL--KKDGLMATHDEETEKFFQGTDVHCILC 244
LGELLK K+ EGVRV +LVWDD TS SLL GLM T DEET +FF+ + V +LC
Sbjct: 295 -TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFSTKGLMNTSDEETRRFFKHSSVQVLLC 353
Query: 245 PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304
PR G SFI+ ++ ++THHQK ++VD+ RR+I++FVGG+DLC+GR+DTP
Sbjct: 354 PRYGGKGHSFIKKSEVETIYTHHQKTMIVDAEAAQN---RRKIVAFVGGLDLCNGRFDTP 410
Query: 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRK 364
H LFRTL T H DDFH PNF + GPREPWHD+HS+++GP A+DVL NFE+RW K
Sbjct: 411 KHPLFRTLKTIHKDDFHNPNF--VTTADDGPREPWHDLHSKIDGPAAYDVLANFEERWMK 468
Query: 365 ----QG-GK------DVLVHLRELGDII-IPPSPVMYPDDHDTWNVQLFRSIDGGAAFGF 412
+G G+ D L+ L + DI+ + + +D ++W+VQ+FRSID + GF
Sbjct: 469 ASKPRGIGRLRTSSDDSLLRLDRIPDIMGLSEASSANDNDPESWHVQVFRSIDSSSVKGF 528
Query: 413 PETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKP 472
P+ P++A L+ GK+ +ID SI AY+ AIR A++FIYIENQYFLGSSF W ++
Sbjct: 529 PKDPKEATGRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSN---- 584
Query: 473 EEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMM 532
+ + A +LIP E++LKI +KI A E+F YIV+PMWPEG P S +Q IL WQ +TM MM
Sbjct: 585 KNLGANNLIPMEIALKIANKIRAREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMM 644
Query: 533 YKDVVQALRAKGI--MEDPRNYLTFFCLGNREVKR----SGE---YE-PAERPEDDSDYL 582
Y+ + +AL G+ +P+++L FFCLG REV G Y P + P+ ++ +
Sbjct: 645 YQTIYKALVEVGLDGQLEPQDFLNFFCLGTREVGTREVPDGTVSVYNSPRKPPQLNAAQV 704
Query: 583 RAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPA 642
+A ++RRFMIYVH+K M+VDDE+++IGSANINQRS+EG RDTEIAMGGYQP+H + +
Sbjct: 705 QALKSRRFMIYVHSKGMVVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGS 764
Query: 643 R--GQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGH 700
R GQI G+RMSLW EHLG L+ F +PE+ ECV++V Q++E W Y++E + ++PGH
Sbjct: 765 RPRGQIFGYRMSLWAEHLGFLEQEFEEPENMECVRRVRQLSELNWRQYAAEEVT-EMPGH 823
Query: 701 LLRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 733
LL+YP+ V G V+ LPG E FPD +++G+
Sbjct: 824 LLKYPVQVDRTGKVSSLPGYETFPDLGGKIIGS 856
|
|
| TAIR|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
Identities = 351/752 (46%), Positives = 489/752 (65%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
NP W + F + AH A+ + F VKD + IG+ ++G + IL+
Sbjct: 110 NPVWMQHFDVPVAHSAAEVHFVVKDSDIIGSQIMGAVGIPTEQLCSGNRIEGLFPILNSS 169
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIRSA-KYPGVPFTFYPQRKGCKVSLYQDAHVP 126
P G+ + + +QY + + R + G+ S + GVP T++P RKG +V+LYQDAHV
Sbjct: 170 GKPCKQGAVLGLSIQYTPMERMRLYQMGVGSGNECVGVPGTYFPLRKGGRVTLYQDAHVD 229
Query: 127 DNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
D +P + L GG Y +CWED+ DAI AR +IYITGWSV+ + LVR + P G
Sbjct: 230 DGTLPSVHLDGGIQYRHGKCWEDMADAIRQARRLIYITGWSVFHPVRLVRRTNDPTEG-- 287
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSLL--KKDGLMATHDEETEKFFQGTDVHCILC 244
LGELLK K+ EGVRV +LVWDD TS SLL K G+M T DEET +FF+ + V +LC
Sbjct: 288 -TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFKTQGVMNTSDEETRRFFKHSSVQVLLC 346
Query: 245 PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304
PR+ G SFI+ ++ ++THHQK V+VD+ RR+I++FVGG+DLC+GR+DTP
Sbjct: 347 PRSGGKGHSFIKKSEVGTIYTHHQKTVIVDAEAAQN---RRKIVAFVGGLDLCNGRFDTP 403
Query: 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRK 364
H LFRTL T H DDFH PNF + GPREPWHD+HS+++GP A+DVL NFE+RW K
Sbjct: 404 KHPLFRTLKTLHKDDFHNPNF--VTTADDGPREPWHDLHSKIDGPAAYDVLANFEERWMK 461
Query: 365 ----QG-GK------DVLVHLRELGDII-IPPSPVMYPDDHDTWNVQLFRSIDGGAAFGF 412
+G GK D L+ + + DI+ + + +D ++W+VQ+FRSID + GF
Sbjct: 462 ASKPRGIGKLKSSSDDSLLRIDRIPDIVGLSEASSANDNDPESWHVQVFRSIDSSSVKGF 521
Query: 413 PETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKP 472
P+ P++A L+ GK+ +ID SI AY+ AIR A++FIYIENQYFLGSSF W ++
Sbjct: 522 PKDPKEATGRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSN---- 577
Query: 473 EEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMM 532
+++ A +LIP E++LKI +KI A E+F YIV+PMWPEG P S +Q IL WQ +TM MM
Sbjct: 578 KDLGANNLIPMEIALKIANKIRAREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMM 637
Query: 533 YKDVVQALRAKGIME--DPRNYLTFFCLGNREVKRS--GEYE-PAERPEDDSDYLRAQ-- 585
Y+ + +AL G+ +P+++L FFCLG REV Y P + P+ +++ AQ
Sbjct: 638 YQTIYKALVEVGLDSQFEPQDFLNFFCLGTREVPVGTVSVYNSPRKPPQPNANANAAQVQ 697
Query: 586 --EARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPAR 643
++RRFMIYVH+K M+VDDE+++IGSANINQRS+EG RDTEIAMGGYQP++ +R
Sbjct: 698 ALKSRRFMIYVHSKGMVVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHYSWAMKGSR 757
Query: 644 --GQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHL 701
GQI G+RMSLW EHLG L+ F +PE+ ECV++V Q++E W Y++E + ++ GHL
Sbjct: 758 PHGQIFGYRMSLWAEHLGFLEQGFEEPENMECVRRVRQLSELNWRQYAAEEVT-EMSGHL 816
Query: 702 LRYPIGVSGEGDVTELPGTEFFPDTKARVLGT 733
L+YP+ V G V+ LPG E FPD +++G+
Sbjct: 817 LKYPVQVDRTGKVSSLPGCETFPDLGGKIIGS 848
|
|
| TAIR|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 201/418 (48%), Positives = 258/418 (61%)
Query: 339 WHDIHSRLEGPIAW--DVLFNFEQ-RWRKQGGKDVLVHLRELGDIIIPPS-PVMY---PD 391
W + RL+G W D L + W V L++ G IIP P ++ D
Sbjct: 468 WKEFSLRLKGKTHWQDDALIRIGRISWILS---PVFKFLKD-GTSIIPEDDPCVWVSKED 523
Query: 392 DHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFI 451
D + W+VQ+FRSID G+ GFP+ ++A L K ++D+SIQ AYI IR A++FI
Sbjct: 524 DPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFI 583
Query: 452 YIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEG 511
YIENQYFLGSS+AW + + A +LIP EL+LKIVSKI A ERF VY+V+P+WPEG
Sbjct: 584 YIENQYFLGSSYAWPSY----RDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEG 639
Query: 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMED--PRNYLTFFCLGNREVKRSGEY 569
P+SG VQ IL WQ +TM MMY DV+ A K + D P +YL F+CLG RE + +
Sbjct: 640 DPKSGPVQEILYWQSQTMQMMY-DVI-AKELKAVQSDAHPLDYLNFYCLGKRE--QLPDD 695
Query: 570 EPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMG 629
PA SD Q RFMIYVHAK MIVDDEY+++GSANINQRSM G +DTEIAMG
Sbjct: 696 MPATNGSVVSDSYNFQ---RFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMG 752
Query: 630 GYQPYHL---STRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWD 686
YQP H R P RGQ++G+RMSLW EHLG D F++P EC+KKVN I+E W
Sbjct: 753 AYQPNHTWAHKGRHP-RGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWK 811
Query: 687 LYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 744
+ +L GHL++YP+ V +G V+ LP E FPD +++G S +P LTT
Sbjct: 812 RFIDPKFS-ELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868
|
|
| TAIR|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
Identities = 333/750 (44%), Positives = 468/750 (62%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYXXXXXXXXXXXXDKWVEILDED 67
NP W + F + AH A+ + F VKD++PIG+ +IG + IL+
Sbjct: 108 NPVWMQHFDVPVAHSAAEVHFVVKDNDPIGSKIIGVVGIPTKQLCSGNRIEGLFPILNSS 167
Query: 68 RNPISSGSKIHVKLQYFDVTKDRSWARGIRSA-KYPGVPFTFYPQRKGCKVSLYQDAHVP 126
P G+ + + +QY + + R + +G+ S + GVP T++P RKG +V+LYQDAHV
Sbjct: 168 GKPCRKGAMLSLSIQYTPMERMRLYQKGVGSGVECVGVPGTYFPLRKGGRVTLYQDAHVD 227
Query: 127 DNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGD 186
D +P + L GG Y +CWED+ DAI AR +IYITGWSV+ + LVR + P G
Sbjct: 228 DGTLPSVHLDGGIQYRHGKCWEDMADAIRRARRLIYITGWSVFHPVRLVRRNNDPTEG-- 285
Query: 187 IMLGELLKKKASEGVRVCMLVWDDRTSVSL--LKKDGLMATHDEETEKFFQGTDVHCILC 244
LGELLK K+ EGVRV +LVWDD TS+S GLM T DEET +FF+ + V +LC
Sbjct: 286 -TLGELLKVKSQEGVRVLVLVWDDPTSMSFPGFSTKGLMNTSDEETRRFFKHSSVQVLLC 344
Query: 245 PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304
PR G SFI+ ++ ++THHQK ++VD+ RR+I++FVGG+DLC+GR+DTP
Sbjct: 345 PRYGGKGHSFIKKSEVETIYTHHQKTMIVDAEAAQN---RRKIVAFVGGLDLCNGRFDTP 401
Query: 305 FHSLFRTLDTAHHDDFHQPNFPGAS-IEKGGPREPWHD-IHSRLEGPIAWDVLFNFEQRW 362
HSLF TL T H DDFH PNF + P H I + + +
Sbjct: 402 KHSLFGTLKTLHKDDFHNPNFVTTEDVGPREPWHDLHSKIDGPAAYDVLANFEERWMASK 461
Query: 363 RKQGGK------DVLVHLRELGDII-IPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPET 415
+ GK D L+ + + DI+ + + +D ++W+VQ+FRSID + GFP+
Sbjct: 462 PRGIGKGRTSFDDSLLRINRIPDIMGLSEASSANDNDPESWHVQVFRSIDSTSVKGFPKD 521
Query: 416 PEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEI 475
PE+A L+ GK+ +ID SI AY+ AIR A++FIYIENQYFLGSSF W ++ +++
Sbjct: 522 PEEATGRNLLCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSN----KDL 577
Query: 476 NALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKD 535
A +LIP E++LKI +KI A E F YIV+PMWPEG P S +Q IL WQ +TM MMY+
Sbjct: 578 GANNLIPMEIALKIANKIRARENFAAYIVIPMWPEGAPTSKPIQRILYWQHKTMQMMYQT 637
Query: 536 VVQALRAKGI--MEDPRNYLTFFCLGNREVKR----SGE---YE-PAERPEDDSDYLRAQ 585
+ +AL G+ +P+++L FFCLGNREV G Y P + P+ ++ ++A
Sbjct: 638 IYKALLEVGLDGQLEPQDFLNFFCLGNREVGTREVPDGTVNVYNCPRKPPQPNAAQVQAL 697
Query: 586 EARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPAR-- 643
++RRFMIYVH+K M+VDDE+++IGSANINQRS+EG RDTEIAMGGYQP+H + +R
Sbjct: 698 KSRRFMIYVHSKGMVVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGSRPR 757
Query: 644 GQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLR 703
GQI G+RMSLW EHLG L+ F +PE+ ECV++V Q++E W Y++E + ++ GHLL+
Sbjct: 758 GQIFGYRMSLWAEHLGFLEQEFEEPENMECVRRVRQLSELNWGQYAAEEVT-EMSGHLLK 816
Query: 704 YPIGVSGEGDVTELPGTEFFPDTKARVLGT 733
YP+ V G V+ LPG E FPD +++G+
Sbjct: 817 YPVQVDKTGKVSSLPGCETFPDLGGKIIGS 846
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q43007 | PLDA1_ORYSJ | 3, ., 1, ., 4, ., 4 | 0.7997 | 0.9986 | 0.9150 | yes | no |
| O04883 | PLDA1_PIMBR | 3, ., 1, ., 4, ., 4 | 0.7836 | 1.0 | 0.9207 | N/A | no |
| P55939 | PLDA2_BRAOC | 3, ., 1, ., 4, ., 4 | 0.8201 | 0.9986 | 0.9150 | N/A | no |
| Q38882 | PLDA1_ARATH | 3, ., 1, ., 4, ., 4 | 0.8319 | 0.9986 | 0.9172 | yes | no |
| Q41142 | PLDA1_RICCO | 3, ., 1, ., 4, ., 4 | 0.8723 | 1.0 | 0.9207 | N/A | no |
| O82549 | PLDA1_BRAOC | 3, ., 1, ., 4, ., 4 | 0.8373 | 0.9986 | 0.9172 | N/A | no |
| O04865 | PLDA1_VIGUN | 3, ., 1, ., 4, ., 4 | 0.8416 | 1.0 | 0.9196 | N/A | no |
| P86387 | PLDA1_CARPA | 3, ., 1, ., 4, ., 4 | 0.8440 | 1.0 | 0.9207 | N/A | no |
| P93400 | PLDA1_TOBAC | 3, ., 1, ., 4, ., 4 | 0.8411 | 0.9986 | 0.9195 | N/A | no |
| Q43270 | PLDA1_MAIZE | 3, ., 1, ., 4, ., 4 | 0.8064 | 0.9986 | 0.9150 | N/A | no |
| Q9SSQ9 | PLDA2_ARATH | 3, ., 1, ., 4, ., 4 | 0.8252 | 0.9986 | 0.9172 | no | no |
| P93844 | PLDA2_ORYSJ | 3, ., 1, ., 4, ., 4 | 0.712 | 0.9973 | 0.9082 | no | no |
| Q70EW5 | PLDA1_CYNCA | 3, ., 1, ., 4, ., 4 | 0.7755 | 1.0 | 0.9207 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 744 | |||
| PLN02270 | 808 | PLN02270, PLN02270, phospholipase D alpha | 0.0 | |
| PLN02352 | 758 | PLN02352, PLN02352, phospholipase D epsilon | 0.0 | |
| PLN03008 | 868 | PLN03008, PLN03008, Phospholipase D delta | 0.0 | |
| cd09199 | 211 | cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea | 1e-144 | |
| cd09197 | 178 | cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea | 1e-124 | |
| cd09142 | 208 | cd09142, PLDc_pPLD_like_2, Catalytic domain, repea | 1e-124 | |
| cd09139 | 176 | cd09139, PLDc_pPLD_like_1, Catalytic domain, repea | 3e-99 | |
| cd09200 | 211 | cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat | 8e-92 | |
| cd09198 | 180 | cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat | 5e-76 | |
| cd09141 | 183 | cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai | 1e-49 | |
| pfam12357 | 74 | pfam12357, PLD_C, Phospholipase D C terminal | 6e-42 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 1e-39 | |
| cd09104 | 147 | cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re | 6e-35 | |
| cd09105 | 146 | cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re | 4e-31 | |
| cd09845 | 182 | cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, | 1e-26 | |
| cd09138 | 146 | cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai | 2e-26 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 4e-26 | |
| cd09844 | 182 | cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, | 7e-25 | |
| cd09143 | 142 | cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain | 1e-18 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 2e-17 | |
| COG1502 | 438 | COG1502, Cls, Phosphatidylserine/phosphatidylglyce | 3e-16 | |
| cd09140 | 146 | cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain | 2e-15 | |
| cd09843 | 145 | cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, | 1e-12 | |
| cd09842 | 151 | cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, | 6e-10 | |
| cd09110 | 154 | cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o | 6e-08 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-07 | |
| smart00155 | 28 | smart00155, PLDc, Phospholipase D | 2e-07 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-06 | |
| pfam00614 | 28 | pfam00614, PLDc, Phospholipase D Active site motif | 4e-06 | |
| cd09112 | 174 | cd09112, PLDc_CLS_2, catalytic domain repeat 2 of | 8e-06 | |
| cd09128 | 142 | cd09128, PLDc_unchar1_2, Putative catalytic domain | 3e-05 | |
| pfam13091 | 129 | pfam13091, PLDc_2, PLD-like domain | 3e-05 | |
| cd09113 | 218 | cd09113, PLDc_ymdC_like_2, Putative catalytic doma | 8e-05 | |
| cd00138 | 119 | cd00138, PLDc_SF, Catalytic domain of phospholipas | 9e-05 | |
| TIGR04265 | 483 | TIGR04265, bac_cardiolipin, cardiolipin synthase | 2e-04 | |
| cd09159 | 170 | cd09159, PLDc_ybhO_like_2, Catalytic domain, repea | 2e-04 | |
| cd09162 | 172 | cd09162, PLDc_CLS_unchar1_2, Putative catalytic do | 3e-04 | |
| cd09163 | 176 | cd09163, PLDc_CLS_unchar2_2, Putative catalytic do | 0.002 | |
| cd09155 | 156 | cd09155, PLDc_PaCLS_like_1, Putative catalytic dom | 0.003 | |
| PRK01642 | 483 | PRK01642, cls, cardiolipin synthetase; Reviewed | 0.004 |
| >gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha | Back alignment and domain information |
|---|
Score = 1562 bits (4045), Expect = 0.0
Identities = 654/744 (87%), Positives = 707/744 (95%)
Query: 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 60
++ E NPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAY+PVEE+L GEEVD+W
Sbjct: 65 KIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRW 124
Query: 61 VEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLY 120
VEILD D+NPI GSKIHVKLQYF+VTKDR+W RGIRSAK+PGVP+TF+ QR+GCKVSLY
Sbjct: 125 VEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRSAKFPGVPYTFFSQRQGCKVSLY 184
Query: 121 QDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR 180
QDAH+PDNFVP+IPLAGGK YEPHRCWED+FDAITNA+H+IYITGWSVYTEISLVRDSRR
Sbjct: 185 QDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRR 244
Query: 181 PKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240
PKPGGD+ +GELLKKKASEGVRV +LVWDDRTSV LLKKDGLMATHDEETE FF+GTDVH
Sbjct: 245 PKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVH 304
Query: 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300
CILCPRNPDDGGS +QD+QIS MFTHHQKIVVVDS MPNG +RRRI+SFVGGIDLCDGR
Sbjct: 305 CILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGR 364
Query: 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 360
YDTPFHSLFRTLDTAHHDDFHQPNF GASI KGGPREPWHDIHSRLEGPIAWDVLFNFEQ
Sbjct: 365 YDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQ 424
Query: 361 RWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAA 420
RW KQGGKD+LV LREL D+IIPPSPVM+PDDH+ WNVQLFRSIDGGAAFGFPETPE AA
Sbjct: 425 RWSKQGGKDILVQLRELEDVIIPPSPVMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAA 484
Query: 421 RAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480
AGLVSGKDNIIDRSIQDAYIHAIRRAK+FIYIENQYFLGSSFAWSADGIKPE+INALHL
Sbjct: 485 EAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHL 544
Query: 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQAL 540
IPKELSLKIVSKIEAGE+FTVY+VVPMWPEG PESGSVQAILDWQRRTM+MMYKDV+QAL
Sbjct: 545 IPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQAL 604
Query: 541 RAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600
RAKG+ EDPRNYLTFFCLGNREVK+SGEYEP+E+PE D+DY+RAQEARRFMIYVH KMMI
Sbjct: 605 RAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMI 664
Query: 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGM 660
VDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRMSLWYEHLGM
Sbjct: 665 VDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMSLWYEHLGM 724
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
LD+TFL PES EC++KVNQIA++YWDLYSSE+LEHDLPGHLLRYPIGV+ EGD+TELPGT
Sbjct: 725 LDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGT 784
Query: 721 EFFPDTKARVLGTKSDYMPPVLTT 744
EFFPDTKARVLG KSDY+PP+LTT
Sbjct: 785 EFFPDTKARVLGAKSDYLPPILTT 808
|
Length = 808 |
| >gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon | Back alignment and domain information |
|---|
Score = 681 bits (1758), Expect = 0.0
Identities = 326/739 (44%), Positives = 445/739 (60%), Gaps = 45/739 (6%)
Query: 11 WYESFHIYCAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE-VDKWVEILDEDR 68
W ++F I CAH + S I T+K +++GR ++ +++ ++ + ++ E+
Sbjct: 60 WNQTFQILCAHPLDSTITITLKTK----CSILGRFHIQAHQIVTEASFINGFFPLIMENG 115
Query: 69 NPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDN 128
P + K+ L + + +W + + + + G+ +PQR C V LYQDAH
Sbjct: 116 KP-NPELKLRFMLWFRPAELEPTWCKILENGSFQGLRNATFPQRSNCHVILYQDAHHCST 174
Query: 129 FVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGG-DI 187
F P + L G P + WED++ AI A+H+IYI GWS ++ LVRD P +
Sbjct: 175 FQPPVDLCGS----PRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGV 230
Query: 188 MLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRN 247
LGELLK+KA EGV V +++WDD TS+ ++K G+M THDE+ +F+ T V C LCPR
Sbjct: 231 KLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKVVCKLCPR- 289
Query: 248 PDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHS 307
+ +F HHQK + VD+ N R IMSFVGG+DLCDGRYDT HS
Sbjct: 290 --------LHKKFPTLFAHHQKTITVDT-RANDSISEREIMSFVGGLDLCDGRYDTEEHS 340
Query: 308 LFRTLDT-AHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQG 366
LFRTL+T +H DF+Q + GA ++KGGPREPWHD H+ + G AWDVL NFEQRW KQ
Sbjct: 341 LFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQC 400
Query: 367 GKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVS 426
VLV + +++ P ++ W VQ++RSID +A P
Sbjct: 401 NPSVLVPTSSIRNLVHQPGSSE--SNNRNWKVQVYRSIDHVSASHMP------------- 445
Query: 427 GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELS 486
++ ++RSI +AY+ AIRRA+ FIYIENQYF+G W D +LIP E++
Sbjct: 446 -RNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKD----NHCGCTNLIPIEIA 500
Query: 487 LKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 546
LKI SKI A ERF VYI++PMWPEG PES VQ IL W R TM MMYK + +A++ G
Sbjct: 501 LKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEP 560
Query: 547 EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606
PR+YL FFCL NRE KR GE+ P P + Y AQ+ RRFM+YVH+K+MIVDD YI
Sbjct: 561 GHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYI 620
Query: 607 IIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFL 666
+IGSAN+NQRSM+G RDTEIA+G YQ + T I +RMSLWYEH G+ +++FL
Sbjct: 621 LIGSANVNQRSMDGCRDTEIAIGCYQSKN-GTNTNNPRDIQAYRMSLWYEHTGLDEESFL 679
Query: 667 QPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTEL-PGTEFFPD 725
+PES ECV+++ I E+ W++YS E + HL+ YPI V+ +G V +L G FPD
Sbjct: 680 EPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFPD 739
Query: 726 TKARVLGTKSDYMPPVLTT 744
TK V G +S +PPV TT
Sbjct: 740 TKTPVKGRRSKMLPPVFTT 758
|
Length = 758 |
| >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta | Back alignment and domain information |
|---|
Score = 651 bits (1679), Expect = 0.0
Identities = 361/790 (45%), Positives = 472/790 (59%), Gaps = 67/790 (8%)
Query: 4 KEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 63
K P W E F+I AH + + F VKDD+ GA +IG A +PV ++ GE + W +
Sbjct: 97 KNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPV 156
Query: 64 LDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIR-SAKYPGVPFTFYPQRKGCKVSLYQD 122
L P + + I + +++ + S+ GI + GV T++P RKG +V LYQD
Sbjct: 157 LGASGKPPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQD 216
Query: 123 AHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPK 182
AHV D +P I L GK YE +CWEDI AI+ A HMIYI GWS++ +I LVR+++ P+
Sbjct: 217 AHVMDGTLPAIGLDNGKVYEHGKCWEDICYAISEAHHMIYIVGWSIFHKIKLVRETKVPR 276
Query: 183 PGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSL--LKKDGLMATHDEETEKFFQGTDVH 240
D+ LGELLK K+ EGVRV +LVWDD+TS +K G+M THDEET KFF+ + V
Sbjct: 277 -DKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVI 335
Query: 241 CILCPRNPDDG-GSFIQDIQISA----------MFTHHQKIVVVDSPMPNGDPERRRIMS 289
C+L PR G F Q +FTHHQK V+VD+ + R++ +
Sbjct: 336 CVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNN---RKVTA 392
Query: 290 FVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP 349
F+GG+DLCDGRYDTP H + LDT DDFH P FP + PR+PWHD+H R++GP
Sbjct: 393 FIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGT---KAPRQPWHDLHCRIDGP 449
Query: 350 IAWDVLFNFEQRWRKQ----------GGK-----DVLVHLREL-------------GDII 381
A+DVL NFEQRWRK GK D L+ + + G I
Sbjct: 450 AAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWILSPVFKFLKDGTSI 509
Query: 382 IPPSP----VMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQ 437
IP V DD + W+VQ+FRSID G+ GFP+ ++A L K ++D+SIQ
Sbjct: 510 IPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQ 569
Query: 438 DAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGE 497
AYI IR A++FIYIENQYFLGSS+AW + + A +LIP EL+LKIVSKI A E
Sbjct: 570 TAYIQTIRSAQHFIYIENQYFLGSSYAWPS----YRDAGADNLIPMELALKIVSKIRAKE 625
Query: 498 RFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFC 557
RF VY+V+P+WPEG P+SG VQ IL WQ +TM MMY + + L+A P +YL F+C
Sbjct: 626 RFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYC 685
Query: 558 LGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRS 617
LG RE + + PA SD Q RFMIYVHAK MIVDDEY+++GSANINQRS
Sbjct: 686 LGKRE--QLPDDMPATNGSVVSDSYNFQ---RFMIYVHAKGMIVDDEYVLMGSANINQRS 740
Query: 618 MEGARDTEIAMGGYQPYHL---STRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECV 674
M G +DTEIAMG YQP H R P RGQ++G+RMSLW EHLG D F++P EC+
Sbjct: 741 MAGTKDTEIAMGAYQPNHTWAHKGRHP-RGQVYGYRMSLWAEHLGKTGDEFVEPSDLECL 799
Query: 675 KKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTK 734
KKVN I+E W + +L GHL++YP+ V +G V+ LP E FPD +++G
Sbjct: 800 KKVNTISEENWKRFIDPKFS-ELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAH 858
Query: 735 SDYMPPVLTT 744
S +P LTT
Sbjct: 859 SMALPDTLTT 868
|
Length = 868 |
| >gnl|CDD|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 421 bits (1083), Expect = e-144
Identities = 181/211 (85%), Positives = 198/211 (93%), Gaps = 1/211 (0%)
Query: 428 KDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSL 487
KDNIIDRSIQDAYI+AIRRAK+FIYIENQYFLGSS+AWS DGIKP++I ALHLIPKELSL
Sbjct: 1 KDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYAWSPDGIKPQDIGALHLIPKELSL 60
Query: 488 KIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM- 546
KIVSKIEAGERF VY+VVPMWPEG PESGSVQAILDWQ+RTM+MMY D+ QALRA+GI
Sbjct: 61 KIVSKIEAGERFRVYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYTDIAQALRAQGIDD 120
Query: 547 EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606
EDPR+YLTFFCL NREVK+ GEYEPAE+PE+DSDY RAQEARRFMIYVH KMMIVDDEYI
Sbjct: 121 EDPRDYLTFFCLANREVKKEGEYEPAEKPEEDSDYARAQEARRFMIYVHTKMMIVDDEYI 180
Query: 607 IIGSANINQRSMEGARDTEIAMGGYQPYHLS 637
IIGSANINQRSM+GARD+EIAMG YQP+HLS
Sbjct: 181 IIGSANINQRSMDGARDSEIAMGAYQPHHLS 211
|
Catalytic domain, repeat 2, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 368 bits (947), Expect = e-124
Identities = 148/178 (83%), Positives = 157/178 (88%)
Query: 137 GGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKK 196
GG+ YEP RCWED+FDAI NA+H+IYITGWSVY EI LVRDSRRPKPGGD+ LGELLKKK
Sbjct: 1 GGQKYEPTRCWEDVFDAIMNAKHLIYITGWSVYCEIVLVRDSRRPKPGGDLTLGELLKKK 60
Query: 197 ASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQ 256
ASEGVRV MLVWDDRTSV LKKDGLMATHDEETE FFQ +DVHC LCPRNPDDGGS +Q
Sbjct: 61 ASEGVRVLMLVWDDRTSVEFLKKDGLMATHDEETEAFFQDSDVHCFLCPRNPDDGGSKVQ 120
Query: 257 DIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDT 314
+QIS MFTHHQKIVVVDSPMP D RRRI+SFVGGIDLCDGRYD PFHSLFRTLD
Sbjct: 121 GLQISTMFTHHQKIVVVDSPMPGSDSGRRRIVSFVGGIDLCDGRYDNPFHSLFRTLDD 178
|
Catalytic domain, repeat 1, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 178 |
| >gnl|CDD|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 369 bits (950), Expect = e-124
Identities = 142/211 (67%), Positives = 161/211 (76%), Gaps = 4/211 (1%)
Query: 428 KDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSL 487
K IDRSIQDAY+HAIRRAK FIYIENQYFLGSSF WS + +I +LIP EL+L
Sbjct: 1 KGRTIDRSIQDAYVHAIRRAKRFIYIENQYFLGSSFMWSN---RDRDIGCANLIPAELAL 57
Query: 488 KIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKG-IM 546
KI KI A ERF VYIV+PMWPEG PES SVQ IL WQR T++MMYK + +A++A G
Sbjct: 58 KIAEKIRARERFAVYIVIPMWPEGIPESESVQEILYWQRLTIEMMYKIIGKAIQATGLFS 117
Query: 547 EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606
E P +YL FFCLGNRE GEYE E P +DY R Q+ RRFMIYVH+KMMIVDDEYI
Sbjct: 118 EHPTDYLNFFCLGNREEVEGGEYEATETPTQGTDYYRLQKNRRFMIYVHSKMMIVDDEYI 177
Query: 607 IIGSANINQRSMEGARDTEIAMGGYQPYHLS 637
IIGSANINQRSM+G RD+EIAMG YQP HL+
Sbjct: 178 IIGSANINQRSMDGCRDSEIAMGAYQPDHLA 208
|
Catalytic domain, repeat 2, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 208 |
| >gnl|CDD|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 3e-99
Identities = 112/179 (62%), Positives = 137/179 (76%), Gaps = 4/179 (2%)
Query: 137 GGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP-KPGGDIMLGELLKK 195
G+ Y P R WED++DAI NA+H+IYI GWSV EISL+RDS R P LGELLK+
Sbjct: 1 NGQVYNPRRLWEDMYDAICNAKHLIYIAGWSVNPEISLIRDSEREDPPKYSPTLGELLKR 60
Query: 196 KASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFI 255
KA EGV V +L+WDD+T V+ K DG+MATHDEET FF+ T V+C+LCPRN D G +++
Sbjct: 61 KAEEGVAVLLLLWDDKT-VNGFKNDGVMATHDEETRNFFRNTKVNCLLCPRNGDAGNTYV 119
Query: 256 QDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDT 314
+ I++S FTHHQK V+VD+P PNG ERR I++FVGGIDLCDGRYD P HSLFRTLDT
Sbjct: 120 EQIEVSTAFTHHQKTVIVDAPAPNG--ERREIVAFVGGIDLCDGRYDNPEHSLFRTLDT 176
|
Catalytic domain, repeat 1, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 176 |
| >gnl|CDD|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 8e-92
Identities = 123/210 (58%), Positives = 155/210 (73%), Gaps = 6/210 (2%)
Query: 428 KDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSL 487
K+ +ID SI AY+ AIR A++FIYIENQYF+GSS+ W A ++ A +LIP E++L
Sbjct: 1 KNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWPAY----KDAGADNLIPMEIAL 56
Query: 488 KIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM- 546
KI KI AGERF VYIV+PMWPEG P +VQ IL WQ +TM MMY+ + +AL G+
Sbjct: 57 KIAEKIRAGERFAVYIVIPMWPEGVPTGAAVQEILYWQHQTMQMMYETIAKALVDTGLEG 116
Query: 547 -EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEY 605
P++YL F+CLGNRE+K E P P +S R+Q++RRFMIYVH+K MIVDDEY
Sbjct: 117 AFSPQDYLNFYCLGNREMKDGIEPSPTNSPRQNSTQGRSQKSRRFMIYVHSKGMIVDDEY 176
Query: 606 IIIGSANINQRSMEGARDTEIAMGGYQPYH 635
+IIGSANINQRSM+G+RDTEIAMG YQP+H
Sbjct: 177 VIIGSANINQRSMDGSRDTEIAMGAYQPHH 206
|
Catalytic domain, repeat 2, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 5e-76
Identities = 102/183 (55%), Positives = 133/183 (72%), Gaps = 6/183 (3%)
Query: 137 GGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKP-GGDIMLGELLKK 195
GGK YE +CWED+ DAI AR +IYITGWSVY ++ L+RD RP P GG++ LGELLK
Sbjct: 1 GGKVYEHGKCWEDMCDAIREARRLIYITGWSVYHKVKLIRDKLRPVPPGGELTLGELLKS 60
Query: 196 KASEGVRVCMLVWDDRTS--VSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGS 253
K+ EGVRV +LVWDD+TS + K DG+MATHDEET++FF+ + V C+L PR S
Sbjct: 61 KSQEGVRVLLLVWDDKTSHSILGYKTDGVMATHDEETKRFFKHSSVQCVLAPRYAGKKHS 120
Query: 254 FIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLD 313
+ + + ++THHQK V+VD+ G+ RR+I +F+GG+DLCDGRYDTP H LFRTL+
Sbjct: 121 WFKQQVVGTLYTHHQKNVIVDAD-AGGN--RRKITAFIGGLDLCDGRYDTPQHPLFRTLE 177
Query: 314 TAH 316
T H
Sbjct: 178 TIH 180
|
Catalytic domain, repeat 1, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 180 |
| >gnl|CDD|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-49
Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 34/202 (16%)
Query: 432 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVS 491
+ SIQ+AY+ I A++FIYIENQ+F+ SS + I + L +I+
Sbjct: 5 TEDSIQNAYLDLIENAEHFIYIENQFFI-SSTGGED--------PVKNRIGEALVDRIIR 55
Query: 492 KIEAGERFTVYIVVPMWP--EGF---PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 546
+ GE+F VYIV+P+ P EG P S++AI+ WQ +++ +++ L+ +
Sbjct: 56 AHKEGEKFRVYIVLPLLPGFEGDLDDPGGSSIRAIMHWQYQSICRGEHSLLERLKKEEG- 114
Query: 547 EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606
DP Y++F L RP E IYVH+K+MIVDD +
Sbjct: 115 VDPEQYISFLSLRTHGKL-------GGRP--------VTE----QIYVHSKLMIVDDRIV 155
Query: 607 IIGSANINQRSMEGARDTEIAM 628
IIGSANIN RSM G RD+EIA+
Sbjct: 156 IIGSANINDRSMLGDRDSEIAV 177
|
Catalytic domain, repeat 2, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 183 |
| >gnl|CDD|193000 pfam12357, PLD_C, Phospholipase D C terminal | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-42
Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Query: 661 LDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720
L+D FL+PES ECV++VN+IAE+ W LY+SE + DLPGHLLRYP+GV +G VTELPG
Sbjct: 1 LEDCFLEPESLECVRRVNEIAEKNWKLYASEEV-TDLPGHLLRYPVGVDRDGKVTELPGC 59
Query: 721 EFFPDTKARVLGTKS 735
EFFPDT A+VLG KS
Sbjct: 60 EFFPDTGAKVLGAKS 74
|
This domain family is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam00168, pfam00614. There is a conserved FPD sequence motif. This family is the C terminal of phospholipase D. PLD is a major plant lipid-degrading enzyme which is involved in signal transduction. Length = 74 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 45/81 (55%), Positives = 59/81 (72%)
Query: 4 KEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 63
+ NP W ESFHIYCAH AS++ FTVKD++ +GA LIGRAY+PVE++L GE V+ W+ I
Sbjct: 78 ENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPI 137
Query: 64 LDEDRNPISSGSKIHVKLQYF 84
LD + P G+KI V LQ+
Sbjct: 138 LDSNGKPPKPGAKIRVSLQFT 158
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-35
Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 140 YYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE 199
+ ++D+ +A+ ARH +YITGW V +I L P GD L A
Sbjct: 4 LIDGEEYFDDLAEALDGARHSVYITGWQVSADIILAPLLAGPDRLGDT----LRTLAARR 59
Query: 200 GVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQ 259
GV V +L+WD V L D + F + T +L R
Sbjct: 60 GVDVRVLLWDSPLLVLLGPDD---KDLNLGFPTFLRLTTALLVLDLRLRR---------- 106
Query: 260 ISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFR 310
+F+HHQK+VV+DS ++FVGGIDL GRYD P H+L
Sbjct: 107 -HTLFSHHQKLVVIDS----------AEVAFVGGIDLAYGRYDDPDHALAA 146
|
Catalytic domain, repeat 1, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 147 |
| >gnl|CDD|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-31
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 59/198 (29%)
Query: 432 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVS 491
+ I DAY+ AIR A+ +IYIE+QY WS EL +
Sbjct: 5 GEFEIADAYLKAIRNARRYIYIEDQYL------WSP----------------ELLDALAE 42
Query: 492 KIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRN 551
++A V +V+P P+ D + L + + +
Sbjct: 43 ALKANPGLRVVLVLPALPDAVAFGADDGL--------------DALALLALLLLADAAPD 88
Query: 552 YLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSA 611
+ F L R IYVH+K++IVDDE+ +GSA
Sbjct: 89 RVAVFSLATH---------------------RRGLLGGPPIYVHSKVVIVDDEWATVGSA 127
Query: 612 NINQRSMEGARDTEIAMG 629
N+N+RSM DTE+ +
Sbjct: 128 NLNRRSMT--WDTELNLA 143
|
Catalytic domain, repeat 2, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 35/201 (17%)
Query: 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSK 492
+ SI +AY+H I +++++Y+ENQ+F+ + + L+ I + +I+
Sbjct: 6 ENSILNAYLHTIENSQHYLYLENQFFISCA----------DGRTVLNKIGDAIVKRILKA 55
Query: 493 IEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIME 547
G F V++V+P+ P EG +G S+QAIL + RT+ ++ L+ +
Sbjct: 56 HSQGWCFRVFVVIPLLPGFEGDISTGGGNSIQAILHFTYRTICRGEYSILSRLKEA-MGT 114
Query: 548 DPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYII 607
+Y++ C G R G E +IY+H+K++I DD +I
Sbjct: 115 AWTDYISI-C-GLRTHGELGGSPVTE-----------------LIYIHSKVLIADDRTVI 155
Query: 608 IGSANINQRSMEGARDTEIAM 628
IGSANIN RSM G RD+E+A+
Sbjct: 156 IGSANINDRSMLGKRDSELAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-26
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 148 EDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLV 207
+ DAI NA+ I+IT W + E+ L R P L LLK+KA EGV++ +L+
Sbjct: 12 WAVADAIENAKEEIFITDWWLSPELYLRRP---PAGNERWRLDRLLKRKAEEGVKIYILL 68
Query: 208 WDDRTSV----SLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAM 263
+ + S K L H ++ + R+PD Q +
Sbjct: 69 YKEVELALTINSKYTKRTLENLH----------PNIKVL---RHPD------HLPQGPLL 109
Query: 264 FTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLF 309
++HH+KIVV+D + ++FVGG+DLC GR+DT H L
Sbjct: 110 WSHHEKIVVID-----------QSIAFVGGLDLCYGRWDTHQHPLT 144
|
Catalytic domain, repeat 1, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-26
Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 51/246 (20%)
Query: 432 IDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVS 491
++ SI AY I +A++FIYIENQ+F+ S D I+ + AL+ +I+
Sbjct: 728 VEESIHAAYCSLIEKAEHFIYIENQFFI--SGLSGDDTIQNRVLEALYR-------RILR 778
Query: 492 KIEAGERFTVYIVVPMWPE---GFPESG--SVQAILDWQRRTMDMMYKDVVQALRAKGIM 546
+ + F V IV+P+ P G + G SV+AI+ WQ RT+ ++ L +
Sbjct: 779 AHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDL-LG 837
Query: 547 EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606
+Y++F+ G R R E P + IYVH+K+MIVDD
Sbjct: 838 PKTHDYISFY--GLRAYGRLFEGGPLATSQ---------------IYVHSKIMIVDDRAA 880
Query: 607 IIGSANINQRSMEGARDTEIA------------MGGYQPYHLSTRVPARGQIHGFRMSLW 654
+IGSANIN RS+ G+RD+EI M G +P+ A H R+SLW
Sbjct: 881 LIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNG-KPWK------AGKFAHSLRLSLW 933
Query: 655 YEHLGM 660
EHLG+
Sbjct: 934 SEHLGL 939
|
Length = 1068 |
| >gnl|CDD|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-25
Identities = 62/201 (30%), Positives = 105/201 (52%), Gaps = 35/201 (17%)
Query: 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSK 492
+ SI AY+ I +K++IYIENQ+F+ + ++ + I ++ +I+
Sbjct: 6 EESIHAAYVSVIENSKHYIYIENQFFISCA----------DDKVVFNKIGDAIAQRILKA 55
Query: 493 IEAGERFTVYIVVPMWP--EGFPESG---SVQAILDWQRRTMDMMYKDVVQALRAKGIME 547
+R+ VY+V+P+ P EG +G ++QAI+ + RTM ++ L+A+ + +
Sbjct: 56 HRENKRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGEHSIIGQLKAE-MGD 114
Query: 548 DPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYII 607
NY++F L R + + E +IYVH+K++I DD +I
Sbjct: 115 QWINYISFCGL---------------RTHAELEGNLVTE----LIYVHSKLLIADDNTVI 155
Query: 608 IGSANINQRSMEGARDTEIAM 628
IGSANIN RSM G RD+E+A+
Sbjct: 156 IGSANINDRSMLGKRDSEMAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-18
Identities = 52/196 (26%), Positives = 72/196 (36%), Gaps = 71/196 (36%)
Query: 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELS----LKI 489
R I+ Y+ AI A+ FIYIENQYF A + + L +I
Sbjct: 7 REIEALYLDAIAAARRFIYIENQYFTSRRIAE--------------ALAERLREPDGPEI 52
Query: 490 VSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDP 549
V IV+P +G+ E + TM + +++ LR D
Sbjct: 53 V------------IVLPRTSDGWLE-----------QLTMGVARARLLRRLRE----ADR 85
Query: 550 RNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIG 609
L + P IYVH+K+MIVDD + +G
Sbjct: 86 HGRLRVYY-------------PVTAGGGGR-----------PIYVHSKLMIVDDRLLRVG 121
Query: 610 SANINQRSMEGARDTE 625
SAN+N RSM DTE
Sbjct: 122 SANLNNRSM--GLDTE 135
|
Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-17
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 62/241 (25%)
Query: 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP-KPGGDIMLGELLKKKASEGVR 202
H +E I AI NA+ I+ITGW + E+ L RRP L LL+ KA +GV+
Sbjct: 343 HAAFEAIASAIENAKSEIFITGWWLCPELYL----RRPFHDHESSRLDSLLEAKAKQGVQ 398
Query: 203 VCMLVWDDRTSVSL-LK------KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFI 255
+ +L++ + V+L LK K L+ H+ + R PD S +
Sbjct: 399 IYILLYKE---VALALKINSVYSKRRLLGIHEN-------------VKVLRYPDHFSSGV 442
Query: 256 QDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA 315
+++HH+K+V+VD + F+GG+DLC GRYDTP H R D
Sbjct: 443 Y------LWSHHEKLVIVDYQI-----------CFIGGLDLCFGRYDTPEH---RVGDCP 482
Query: 316 HH----DDFHQP--NFPGA-------SIEKGG-PREPWHDIHSRLEGPIAWDVLFNFEQR 361
D++ P + P + +++ PR PWHD+H L GP DV +F QR
Sbjct: 483 PVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQR 542
Query: 362 W 362
W
Sbjct: 543 W 543
|
Length = 1068 |
| >gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-16
Identities = 86/480 (17%), Positives = 148/480 (30%), Gaps = 168/480 (35%)
Query: 150 IFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWD 209
+ + I A+ IY+ + + +D G +L + L + A GV V +L+ D
Sbjct: 75 LIELIEAAKKSIYL-------QYYIWQD----DELGREIL-DALIEAAKRGVEVRLLLDD 122
Query: 210 DRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQK 269
++ LLK + G + + P +P H+K
Sbjct: 123 IGSTRGLLKSLLALLKRA--------GIEEVRLFNPASPRPL------RFRRLNRRLHRK 168
Query: 270 IVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAS 329
IVV+D ++FVGG ++ D FH
Sbjct: 169 IVVIDGK-----------VAFVGGANI----GDEYFH----------------------- 190
Query: 330 IEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVM- 388
K W D+H R+ GP D+ F Q W + G + L ++ PP +
Sbjct: 191 --KDKGLGYWRDLHVRITGPAVADLARLFIQDWNLESG-----SSKPLLALVRPPLQSLS 243
Query: 389 YPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAK 448
VQ+ S P+ + L + + AI A+
Sbjct: 244 LLPVGRGSTVQVLSS-----------GPDKGLGSEL---------IELNRLLLKAINSAR 283
Query: 449 NFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 508
I I YF + +EL + + G V I++P
Sbjct: 284 ESILIATPYF---------------------VPDRELLAALKAAARRGVD--VRIIIPSL 320
Query: 509 PEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGE 568
G +S V A R + + + V+ +L
Sbjct: 321 --GANDSAIVHAA---YRAYLKELLEAGVKVYE-----YPGGAFL--------------- 355
Query: 569 YEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 628
H+K+MI+DD +++GSAN++ RS+ + E+ +
Sbjct: 356 --------------------------HSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGL 387
|
Length = 438 |
| >gnl|CDD|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-15
Identities = 46/164 (28%), Positives = 60/164 (36%), Gaps = 47/164 (28%)
Query: 152 DAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE--GVRVCMLVWD 209
+A+ AR I I GW + I L R GG LG+ L A + + +L WD
Sbjct: 16 EALLRARRSILIVGWDFDSRIRLRRGGDDD--GGPERLGDFLNWLAERRPDLDIRILKWD 73
Query: 210 -------DRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISA 262
+R + L TH + D H L G S
Sbjct: 74 FAMLYALERELLPLFLLR--WKTHPRIHFRL----DGHHPL-------GAS--------- 111
Query: 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFH 306
HHQKIVV+D ++F GGIDL R+DT H
Sbjct: 112 ---HHQKIVVID-----------DALAFCGGIDLTVDRWDTREH 141
|
Catalytic domain, repeat 1, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 146 |
| >gnl|CDD|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-12
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 38/167 (22%)
Query: 140 YYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE 199
+ H + + DA+ A+ I+IT W + E+ L +RP G D L +LK+KA +
Sbjct: 4 FVNGHGYFAAVADALEQAQEEIFITDWWLSPEVFL----KRPAHGDDWRLDIILKRKAEQ 59
Query: 200 GVRVCMLVWDDRTSV----SLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFI 255
GVRVC+L++ + S K LM H I R+PD S +
Sbjct: 60 GVRVCVLLFKEVELALGINSGYSKRKLMLLHPN-------------IKVMRHPDHVASVV 106
Query: 256 QDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYD 302
++ HH+K+V +D + ++F+GG+DL GR+D
Sbjct: 107 ------VLWAHHEKMVAID-----------QSVAFLGGLDLAYGRWD 136
|
Catalytic domain, repeat 1, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 145 |
| >gnl|CDD|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-10
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 40/176 (22%)
Query: 139 KYYEPHRCW-EDIFDAITNARHMIYITGWSVYTEISLVRDSRRPK-PGGDIMLGELLKKK 196
K+Y +C+ ED+ +A+ A+ I+IT W + EI L +RP G L +LK+K
Sbjct: 2 KWYVNAKCYFEDVANAMEEAKEEIFITDWWLSPEIFL----KRPVVEGNRWRLDCILKRK 57
Query: 197 ASEGVRVCMLVWDDRTSV----SLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGG 252
A +GVR+ ++++ + S K LM H I R+PD
Sbjct: 58 AQQGVRIFVMLYKEVELALGINSEYSKRTLMRLHPN-------------IKVMRHPDHVS 104
Query: 253 SFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSL 308
S + ++ HH+KIVV+D + +FVGGIDL GR+D H L
Sbjct: 105 SSVY------LWAHHEKIVVIDQSV-----------AFVGGIDLAYGRWDDDEHRL 143
|
Catalytic domain, repeat 1, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 151 |
| >gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 48/222 (21%), Positives = 74/222 (33%), Gaps = 79/222 (35%)
Query: 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCML 206
+ + +AI ARH I++ E + RD G + L +KA GV V +L
Sbjct: 7 FPALLEAIRAARHSIHL-------EYYIFRDDEI----GRRFR-DALIEKARRGVEVRLL 54
Query: 207 VWDDRTSVSLLKKDGLMATHDEETEKFFQ-----GTDVHCILCPRNPDDGGSFIQDIQIS 261
D S+ L ++ F + G +V P
Sbjct: 55 Y-DGFGSLGLSRR-------------FLRELREAGVEVRAFNPLSFPLFLLRL------- 93
Query: 262 AMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFH 321
+ +H+KI+V+D +I FVGG ++ D Y
Sbjct: 94 -NYRNHRKILVID----------GKIA-FVGGFNIGD-EY-------------------- 120
Query: 322 QPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWR 363
+ K PW D H R+EGP D+ F + W
Sbjct: 121 --------LGKDPGFGPWRDTHVRIEGPAVADLQAAFLEDWY 154
|
Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 3 KKEQSNPRWYESFHIYCAHMASN-IIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKW 60
K NP W E+F + V D + G IG+ +P+ ++L G +K
Sbjct: 42 VKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|197546 smart00155, PLDc, Phospholipase D | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 590 FMIYVHAKMMIVDDEYIIIGSANINQRS 617
+ +H K+MIVDDE IGSAN++ RS
Sbjct: 1 YDGVLHTKLMIVDDEIAYIGSANLDGRS 28
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 3 KKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLG-GEEVDK 59
K NP W E+F + + V D + +G +P+ E+L G+E +
Sbjct: 39 VKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGEL 98
Query: 60 WVEI 63
W+ +
Sbjct: 99 WLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|216022 pfam00614, PLDc, Phospholipase D Active site motif | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 591 MIYVHAKMMIVDDEYIIIGSANINQRS 617
+H K+++VDDE IG AN++ S
Sbjct: 2 DGRLHTKIVVVDDEVAYIGGANLDGGS 28
|
Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site. aspartic acid. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|197211 cd09112, PLDc_CLS_2, catalytic domain repeat 2 of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 593 YVHAKMMIVDDEYIIIGSANINQRSME 619
++H+K +IVDDE +G+AN++ RS E
Sbjct: 92 FLHSKTLIVDDEIASVGTANLDIRSFE 118
|
This CD corresponds to the catalytic domain repeat 2 of bacterial cardiolipin synthase (CL synthase, EC 2.7.8.-) and a few homologs found in eukaryotes and archea. Bacterial CL synthases catalyze reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form cardiolipin (CL) and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of conserved HKD motifs (H-X-K-X(4)-D, X represents any amino acid residue) that are the characteristic of the phospholipase D (PLD) superfamily. Two HKD motifs from two domains together form a single active site involving in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity in PLD superfamily. Like other PLD enzymes, bacterial CL synthase utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid stabilizing the leaving group. Length = 174 |
| >gnl|CDD|197226 cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 592 IYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 628
+ +HAK ++VD + ++GS N + S++ R+ +
Sbjct: 89 LKIHAKGIVVDGKTALVGSENWSANSLDRNREVGLIF 125
|
Putative catalytic domain, repeat 2, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 142 |
| >gnl|CDD|221916 pfam13091, PLDc_2, PLD-like domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 595 HAKMMIVDDEYIIIGSANINQRSMEG 620
HAK I+D + IIGS+N+ +R++
Sbjct: 79 HAKFYIIDGKTAIIGSSNLTRRALSL 104
|
Length = 129 |
| >gnl|CDD|197212 cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 595 HAKMMIVDDEYIIIGSANINQRSMEGARDTEIAM 628
HAK ++DD + +GS N++ RS +TE+ +
Sbjct: 118 HAKSFVIDDRLVFVGSFNLDPRSA--YLNTEMGL 149
|
Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 218 |
| >gnl|CDD|197200 cd00138, PLDc_SF, Catalytic domain of phospholipase D superfamily proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-05
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 588 RRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDT 624
F +HAK++++D E +GSAN++ S R+
Sbjct: 79 PHFFERLHAKVVVIDGEVAYVGSANLSTASAAQNREA 115
|
Catalytic domain of phospholipase D (PLD) superfamily proteins. The PLD superfamily is composed of a large and diverse group of proteins including plant, mammalian and bacterial PLDs, bacterial cardiolipin (CL) synthases, bacterial phosphatidylserine synthases (PSS), eukaryotic phosphatidylglycerophosphate (PGP) synthase, eukaryotic tyrosyl-DNA phosphodiesterase 1 (Tdp1), and some bacterial endonucleases (Nuc and BfiI), among others. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze the transphosphatidylation of phospholipids to acceptor alcohols. The majority of members in this superfamily contain a short conserved sequence motif (H-x-K-x(4)-D, where x represents any amino acid residue), called the HKD signature motif. There are varying expanded forms of this motif in different family members. Some members contain variant HKD motifs. Most PLD enzymes are monomeric proteins with two HKD motif-containing domains. Two HKD motifs from two domains form a single active site. Some PLD enzymes have only one copy of the HKD motif per subunit but form a functionally active dimer, which has a single active site at the dimer interface containing the two HKD motifs from both subunits. Different PLD enzymes may have evolved through domain fusion of a common catalytic core with separate substrate recognition domains. Despite their various catalytic functions and a very broad range of substrate specificities, the diverse group of PLD enzymes can bind to a phosphodiester moiety. Most of them are active as bi-lobed monomers or dimers, and may possess similar core structures for catalytic activity. They are generally thought to utilize a common two-step ping-pong catalytic mechanism, involving an enzyme-substrate intermediate, to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 119 |
| >gnl|CDD|211988 TIGR04265, bac_cardiolipin, cardiolipin synthase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 66/314 (21%), Positives = 105/314 (33%), Gaps = 103/314 (32%)
Query: 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCML 206
++ + I NARH I++ + +P GD +L E L KA +GV +
Sbjct: 131 YDALIQDIKNARHYIHLEYYIW-----------QPDGLGDQIL-ESLMAKAKQGVH-VRI 177
Query: 207 VWDDRTSVSLLKKD-GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFT 265
++DD SV+L K L E FF + + +
Sbjct: 178 LYDDVGSVALFKSWPELFRNAGGEVVAFFP-----------------VKLPLLNLRMNNR 220
Query: 266 HHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNF 325
+H+KI+V+D + +VGG ++ D Y
Sbjct: 221 NHRKIIVIDG-----------QIGYVGGFNIGD-EY------------------------ 244
Query: 326 PGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPS 385
+ K W D H R+EG + F W Q G+ IIP
Sbjct: 245 ----LGKDAKFGYWRDTHLRIEGDAVTALQLIFILDWNSQTGRR-----------IIPYD 289
Query: 386 PVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIR 445
P +P ++ + I G P+ P + I+ Y+ I
Sbjct: 290 PDYFPMPNEQAGGHGIQIIASG-----PDFPWEQ----------------IKYGYLKMIY 328
Query: 446 RAKNFIYIENQYFL 459
AK IYI++ YF+
Sbjct: 329 SAKKSIYIQSPYFI 342
|
This model is based on experimentally characterized bacterial cardiolipin synthases (cls) from E. coli, Staphylococcus aureus (two), and Bacillus pseudofirmus OF4. This model describes just one of several homologous but non-orthologous forms of cls. The cutoff score is set arbitrarily high to avoid false-positives. Note that there are two enzymatic activites called cardiolipin synthase. This model represents type 1, which does not rely on a CDP-linked donor, but instead does a reversible transfer of a phosphatidyl group from one phosphatidylglycerol molecule to another. Length = 483 |
| >gnl|CDD|197256 cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 595 HAKMMIVDDEYIIIGSANINQRSM 618
HAK ++D ++ +GS+N++ RS+
Sbjct: 94 HAKTAVIDGDWATVGSSNLDPRSL 117
|
Catalytic domain, repeat 2, of Escherichia coli cardiolipin (CL) synthase ybhO and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli CL synthase. The prototype of this subfamily is Escherichia coli CL synthase ybhO specified by the f413 (ybhO) gene. ybhO is a membrane-bound protein that catalyzes the formation of cardiolipin (CL) by transferring phosphatidyl group between two phosphatidylglycerol molecules. It can also catalyze phosphatidyl group transfer to water to form phosphatidate. In contrast to the Escherichia coli CL synthase encoded by the cls gene (EcCLS), ybhO does not hydrolyze CL. Moreover, ybhO lacks an N-terminal segment encoded by Escherichia coli cls, which makes ybhO easy to denature. The monomer of ybhO consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. ybhO can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Length = 170 |
| >gnl|CDD|197259 cd09162, PLDc_CLS_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 579 SDYLR-AQEAR-RFMIY----VHAKMMIVDDEYIIIGSANINQRSM 618
YLR QEA +Y +HAK ++VDD+ ++GSAN++ RS+
Sbjct: 72 GSYLRDLQEAGAEIYLYQPGMLHAKAVVVDDKLALVGSANLDMRSL 117
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 172 |
| >gnl|CDD|197260 cd09163, PLDc_CLS_unchar2_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 595 HAKMMIVDDEYIIIGSANINQRS 617
H+K+M+VD + +IGSAN + RS
Sbjct: 94 HSKLMVVDGAWALIGSANWDPRS 116
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 176 |
| >gnl|CDD|197252 cd09155, PLDc_PaCLS_like_1, Putative catalytic domain, repeat 1, of Pseudomonas aeruginosa cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 83/220 (37%)
Query: 150 IFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKK----KASEGVRVCM 205
IF+AI +A I + + ++RD LG LK +A GVRV +
Sbjct: 10 IFEAIASAEEYILV-------QFYIIRDDD---------LGRELKDALIARAQAGVRVYL 53
Query: 206 LVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFT 265
L +D+ S SL + + E K G +V + + Q++ F
Sbjct: 54 L-YDEIGSHSLSRS------YIERLRK--AGVEVS------AFNTTRGWGNRFQLN--FR 96
Query: 266 HHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD---GRYDTPFHSLFRTLDTAHHDDFHQ 322
+H+KIVVVD + +FVGG ++ D GR
Sbjct: 97 NHRKIVVVDG--------QT---AFVGGHNVGDEYLGR---------------------D 124
Query: 323 PNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRW 362
P PW D H +LEGP + +F + W
Sbjct: 125 PRLG-----------PWRDTHVKLEGPAVQQLQLSFAEDW 153
|
Putative catalytic domain, repeat 1, of Pseudomonas aeruginosa cardiolipin (CL) synthase (PaCLS) and similar proteins. Although PaCLS and similar proteins have not been functionally characterized, members in this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, PaCLS and other members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 156 |
| >gnl|CDD|234967 PRK01642, cls, cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 65/324 (20%), Positives = 96/324 (29%), Gaps = 128/324 (39%)
Query: 150 IFDAITNARHMI----YITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCM 205
I I ARH I YI R GD + E L A GVRV +
Sbjct: 131 IIRDIELARHYILMEFYI-----------WRPDGL----GD-QVAEALIAAAKRGVRVRL 174
Query: 206 LV-------WDDRTSVSLLKKDGLMATHDEETEK---FFQGTDVHCILCPRNPDDGGSFI 255
L + L+ G+ + F + D+ RN
Sbjct: 175 LYDSIGSFAFFRSPYPEELRNAGVEVVEFLKVNLGRVFRRRLDL------RN-------- 220
Query: 256 QDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA 315
H+KIVV+D I ++ G +++ D Y
Sbjct: 221 -----------HRKIVVIDG----------YI-AYTGSMNVVDPEY-------------- 244
Query: 316 HHDDFHQ-PNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHL 374
F Q P W D H R+EGP+ + F + W + G+ +L
Sbjct: 245 ----FKQDPGVG-----------QWRDTHVRIEGPVVTALQLIFAEDWEWETGERILPPP 289
Query: 375 RELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDR 434
P +M ++ VQ+ S G P PE+
Sbjct: 290 --------PDVLIMPFEEASGHTVQVIAS--G------PGDPEET--------------- 318
Query: 435 SIQDAYIHAIRRAKNFIYIENQYF 458
I + AI A+ ++I YF
Sbjct: 319 -IHQFLLTAIYSARERLWITTPYF 341
|
Length = 483 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 744 | |||
| PLN02270 | 808 | phospholipase D alpha | 100.0 | |
| PLN03008 | 868 | Phospholipase D delta | 100.0 | |
| PLN02352 | 758 | phospholipase D epsilon | 100.0 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 100.0 | |
| PLN02866 | 1068 | phospholipase D | 100.0 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 100.0 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 100.0 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 100.0 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 100.0 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 100.0 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 100.0 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 100.0 | |
| PF12357 | 74 | PLD_C: Phospholipase D C terminal ; InterPro: IPR0 | 99.93 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 99.8 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 99.79 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.69 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.66 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.58 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.56 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 99.52 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.5 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 99.46 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 99.42 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 99.4 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.39 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.38 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.34 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.31 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.3 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.29 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.29 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.27 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.27 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.25 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.22 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.2 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.2 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.18 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.13 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.11 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.08 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 99.05 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.04 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.02 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.01 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.01 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 99.0 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 98.99 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 98.99 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 98.98 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 98.98 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 98.97 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 98.97 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 98.96 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 98.96 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 98.95 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 98.93 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 98.93 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 98.9 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 98.89 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 98.88 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 98.88 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 98.88 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 98.86 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 98.86 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.82 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 98.81 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 98.81 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 98.8 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 98.8 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 98.79 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 98.78 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 98.77 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 98.76 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 98.76 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 98.74 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 98.74 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 98.74 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.74 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 98.74 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 98.71 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 98.69 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 98.68 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 98.67 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 98.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.67 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 98.66 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 98.66 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 98.65 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 98.65 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 98.64 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 98.63 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 98.63 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 98.62 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 98.61 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 98.61 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 98.61 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 98.6 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.6 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.56 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.56 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 98.55 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.55 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 98.53 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.53 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 98.52 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.52 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 98.46 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 98.44 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 98.43 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 98.4 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 98.39 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 98.38 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 98.38 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 98.37 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 98.37 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 98.36 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 98.33 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 98.26 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.22 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.21 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 98.21 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.2 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 98.18 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 98.16 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 98.13 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.07 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.06 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 98.05 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.05 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 98.01 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 97.77 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 97.7 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 97.69 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 97.67 | |
| KOG3964 | 469 | consensus Phosphatidylglycerolphosphate synthase [ | 97.66 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 97.63 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 97.61 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 97.57 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 97.48 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.42 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 97.38 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 97.32 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 97.32 | |
| PLN02866 | 1068 | phospholipase D | 97.17 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 97.16 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 96.99 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 96.97 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 96.91 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 96.6 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 96.58 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 96.43 | |
| COG0855 | 696 | Ppk Polyphosphate kinase [Inorganic ion transport | 96.02 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 96.02 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 95.96 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 95.8 | |
| COG3886 | 198 | Predicted HKD family nuclease [DNA replication, re | 95.38 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 95.2 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 95.16 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 95.03 | |
| PLN02352 | 758 | phospholipase D epsilon | 94.79 | |
| PLN03008 | 868 | Phospholipase D delta | 94.42 | |
| PF11495 | 233 | Regulator_TrmB: Archaeal transcriptional regulator | 94.04 | |
| PLN02270 | 808 | phospholipase D alpha | 93.45 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 90.77 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 89.96 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 89.74 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 86.47 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 86.13 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 82.02 |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-190 Score=1613.91 Aligned_cols=744 Identities=88% Similarity=1.482 Sum_probs=708.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
||+|++.||+|||+|+|||||++++|+|+|||+|++|+++||+++|||++|++|+.|++||||++++|||++.+.+|||.
T Consensus 65 ~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~ 144 (808)
T PLN02270 65 KIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVK 144 (808)
T ss_pred ecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEE
Confidence 68886689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccccccccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccE
Q 004579 81 LQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHM 160 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~ 160 (744)
+||+|+..++.|..||.++.|.|||.+|||+|.||+||||||+|++++|+|.|++.+|+.|++.+||+++++||.+|||+
T Consensus 145 ~~f~~~~~~~~~~~gv~~~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~ 224 (808)
T PLN02270 145 LQYFEVTKDRNWGRGIRSAKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHL 224 (808)
T ss_pred EEEEEcccCcchhcccCCcCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcE
Q 004579 161 IYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVH 240 (744)
Q Consensus 161 I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~ 240 (744)
|||++|+|+|+++|+|++..+.++...+|+++|++||++||+|+||+||+.++..+++..|+|.||+++++++|++++|+
T Consensus 225 IyI~GW~~d~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~thd~~t~~~f~~~~V~ 304 (808)
T PLN02270 225 IYITGWSVYTEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVH 304 (808)
T ss_pred EEEEEeecCCCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccCHHHHHHHhccCCce
Confidence 99999999999999998765555566899999999999999999999999998877777899999999999999999999
Q ss_pred EEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCC
Q 004579 241 CILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDF 320 (744)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~ 320 (744)
|++++++|+.+.+++++...++.++||||+||||++++++.+++|+++|||||+|||++||||++|++|++|++.|++||
T Consensus 305 ~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df 384 (808)
T PLN02270 305 CILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDF 384 (808)
T ss_pred EEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccc
Confidence 99999999888888888888999999999999999887766679999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeee
Q 004579 321 HQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQL 400 (744)
Q Consensus 321 ~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv 400 (744)
+||+|.+++++.++||+||||+||+|+||+|++|+.+|++||+.++++.++....+++++..|+++...|++.++|+||+
T Consensus 385 ~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~~~~~~~~~P~~~~~~p~d~~~w~VQv 464 (808)
T PLN02270 385 HQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLRELEDVIIPPSPVMFPDDHEVWNVQL 464 (808)
T ss_pred cCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhhcccccccCCCCcccCCCcCCccccce
Confidence 99999998888889999999999999999999999999999999998876655566666666665555677889999999
Q ss_pred eecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhccc
Q 004579 401 FRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHL 480 (744)
Q Consensus 401 ~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~ 480 (744)
|||++.+++++||..|++++++|+++|++...++||+.+|++||++||||||||||||++++++|+++++++++.++.|+
T Consensus 465 fRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nl 544 (808)
T PLN02270 465 FRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHL 544 (808)
T ss_pred eecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999888999999999999999999999999999999999877888899999999
Q ss_pred chHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCC
Q 004579 481 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGN 560 (744)
Q Consensus 481 i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~ 560 (744)
||++|+++|+++++++++|+||||+|+||||.+++.++|+||+||++||+|||.+++++|+++|+..+|+|||+||||||
T Consensus 545 Ip~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~n 624 (808)
T PLN02270 545 IPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGN 624 (808)
T ss_pred chHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998779999999999999
Q ss_pred cccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCCC
Q 004579 561 REVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRV 640 (744)
Q Consensus 561 ~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~~ 640 (744)
||....++|.|...|.++++|.++|++||+|||||||+|||||+|++|||||||+|||.|+|||||+|++|||.++++..
T Consensus 625 re~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~~ 704 (808)
T PLN02270 625 REVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQ 704 (808)
T ss_pred cccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCcccccccc
Confidence 99988889999878888889999999999999999999999999999999999999999999999999999999887656
Q ss_pred CccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCC
Q 004579 641 PARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGT 720 (744)
Q Consensus 641 ~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~ 720 (744)
.+|++|++|||+||+||||+.++.|.+|+|++|+++||++|++||++|+++++..+|+|||++||+.|+.||+|++|||+
T Consensus 705 ~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~ 784 (808)
T PLN02270 705 PARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGT 784 (808)
T ss_pred chHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCCC
Confidence 77999999999999999999999999999999999999999999999999998678999999999999999999999999
Q ss_pred CCCCCCCCceecccCCCCCCCCCC
Q 004579 721 EFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
|+||||+|+|||++|.+||++|||
T Consensus 785 ~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 785 EFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999997
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-184 Score=1560.60 Aligned_cols=726 Identities=48% Similarity=0.873 Sum_probs=674.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
||+| +.||+|||+|+|+|+|+++.|+|+|||+|.+|+++||+++||+++|.+|+.+++|++|++++|||+|.+++|||.
T Consensus 95 Vi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 95 VLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred eCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEEEE
Confidence 5788 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccccc-cccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhccc
Q 004579 81 LQYFDVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARH 159 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~-~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~ 159 (744)
|||+|+..++.|..||.+ +.|.|||.+|||+|.||+||||||||++++|+|.|+|.+|+.|++++|||+|++||++||+
T Consensus 174 lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~AI~~Ak~ 253 (868)
T PLN03008 174 MKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAISEAHH 253 (868)
T ss_pred EEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHHHHhhhh
Confidence 999999999999999988 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccc--ccccccccCCCcHHHHHHhcCC
Q 004579 160 MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVS--LLKKDGLMATHDEETEKFFQGT 237 (744)
Q Consensus 160 ~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~--~~~~~g~~~~~~~~~~~~l~~~ 237 (744)
+|||++|+++|++||+|++..+. +.+.+|+++|++||+|||+|+|||||+.+|.. .+++.|+|.||+++++++|+++
T Consensus 254 ~IyI~gWsl~~ei~L~R~~~~~~-~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdeet~~~f~h~ 332 (868)
T PLN03008 254 MIYIVGWSIFHKIKLVRETKVPR-DKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFFKHS 332 (868)
T ss_pred eEEEeceeecceeEEecCCCCCC-CCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHHHHHhhcCC
Confidence 99999999999999999875322 24789999999999999999999999999872 3678999999999999999999
Q ss_pred CcEEEEcCCCCCCCCcceeee-----------cccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCc
Q 004579 238 DVHCILCPRNPDDGGSFIQDI-----------QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFH 306 (744)
Q Consensus 238 gV~~~~~~~~~~~~~~~~~~~-----------~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H 306 (744)
+|+|.+||++++...+++++. ...++++||||+||||+++++ ++|+++|||||+|||++||||++|
T Consensus 333 ~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~---~~r~~vAFvGGiDLc~gRwDT~~H 409 (868)
T PLN03008 333 SVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVG---NNRKVTAFIGGLDLCDGRYDTPEH 409 (868)
T ss_pred CeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCC---CccceEEEEcceeccCCccCCcCC
Confidence 999999999988888877763 455889999999999997554 579999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCC---------------ccc
Q 004579 307 SLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK---------------DVL 371 (744)
Q Consensus 307 ~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~---------------~~l 371 (744)
++|+++++.+++||+||++++ ..++|++||||+||+|+||||++|+.+|++||++++++ +.+
T Consensus 410 ~l~~~l~t~~~~D~~np~~~~---~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~d~l 486 (868)
T PLN03008 410 RILHDLDTVFKDDFHNPTFPA---GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDAL 486 (868)
T ss_pred CccccccccccccccCccccC---CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccccchh
Confidence 999999999999999999864 45678999999999999999999999999999999873 344
Q ss_pred ccccccCCCCCCCC--------------CCCCC---CCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchh
Q 004579 372 VHLRELGDIIIPPS--------------PVMYP---DDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDR 434 (744)
Q Consensus 372 ~~~~~~~~~~~p~~--------------~~~~~---~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~ 434 (744)
..+.++++++.|+. +...+ +++++|+||+|||++.|++++||..+++++.++|+||++..+|+
T Consensus 487 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~ 566 (868)
T PLN03008 487 IRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDK 566 (868)
T ss_pred cchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccchhh
Confidence 55666777665531 11112 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCC
Q 004579 435 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPE 514 (744)
Q Consensus 435 sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~ 514 (744)
||++||++||++||||||||||||++++++|+++ ++.++.|+||++|+++|+++++++++|+||||+|+||||.++
T Consensus 567 SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~----~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~ 642 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY----RDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK 642 (868)
T ss_pred hHHHHHHHHHHhhccEEEEehhhhhccccccccc----cccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence 9999999999999999999999999999999887 788999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEe
Q 004579 515 SGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYV 594 (744)
Q Consensus 515 ~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyv 594 (744)
++++|+||+||++||+|||.+|+++|+++|.+.+|+|||+||||||||... +...+.+++.+..+|++||+||||
T Consensus 643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~-----~~~~~~~~~~~~~a~~~rr~~IYv 717 (868)
T PLN03008 643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLP-----DDMPATNGSVVSDSYNFQRFMIYV 717 (868)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEeccccccccc-----CCCCCCCCchhhhhhhccceeEEE
Confidence 999999999999999999999999999998878999999999999998752 122334567788899999999999
Q ss_pred eeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCC--CCccchHHHHHHHHHHHhcCCCccccCCCCcHH
Q 004579 595 HAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTR--VPARGQIHGFRMSLWYEHLGMLDDTFLQPESSE 672 (744)
Q Consensus 595 HSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~--~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~ 672 (744)
|||+|||||++++|||||||+|||.|+||||+++.+||+.++++. +.+||+|++|||+||+||||+.++.|.+|+|+|
T Consensus 718 HsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~e 797 (868)
T PLN03008 718 HAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLE 797 (868)
T ss_pred eeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHH
Confidence 999999999999999999999999999999999999999998753 478999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 673 CVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 673 ~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
|+++||++|++||++|+++++ ++|+|||++||+.|+.||+|++|||+|+||||+|+|||++|.+||++|||
T Consensus 798 cv~~vn~~a~~~w~~y~~~~~-~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 798 CLKKVNTISEENWKRFIDPKF-SELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999997 78999999999999999999999999999999999999999999999997
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-178 Score=1516.02 Aligned_cols=700 Identities=46% Similarity=0.871 Sum_probs=643.1
Q ss_pred CCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCc-cceEEecccCCCCCCCCCceEEEE
Q 004579 3 KKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE-VDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~-v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
+| +.||+|||+|+|||||++ ++|+|+||| |+++||+++|||++|++|+. |++||||++++|||++. .+|||.
T Consensus 53 ~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~ 126 (758)
T PLN02352 53 SH-EYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFM 126 (758)
T ss_pred CC-CCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEE
Confidence 46 669999999999999999 899999999 69999999999999999976 99999999999999966 999999
Q ss_pred EEeecccccccccccccccccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccE
Q 004579 81 LQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHM 160 (744)
Q Consensus 81 lqf~p~~~~~~w~~~i~~~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~ 160 (744)
+||+|+..++.|..||..+.|.|||.+|||+|.||+|+||||+|++++|+|.|++ .|.+++||++|++||++|||+
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~s 202 (758)
T PLN02352 127 LWFRPAELEPTWCKILENGSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHL 202 (758)
T ss_pred EEEEEhhhCcchhhcccCCCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccE
Confidence 9999999999999999999999999999999999999999999999999999988 577789999999999999999
Q ss_pred EEEEEeccCcceEEeeCCCCCCC-CchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCc
Q 004579 161 IYITGWSVYTEISLVRDSRRPKP-GGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDV 239 (744)
Q Consensus 161 I~I~~w~~~~~~~L~r~~~~~~~-~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV 239 (744)
|||++|+|+++++|+|++..+.+ +.+.+|+++|++||+|||+|+||+||+.++..+++..|+|.+|++++.++|++++|
T Consensus 203 I~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~~~~~f~h~~V 282 (758)
T PLN02352 203 IYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKV 282 (758)
T ss_pred EEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHHHHhhccCCce
Confidence 99999999999999998754333 35799999999999999999999999999987778889999999999999999999
Q ss_pred EEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCcccccccccc-CCC
Q 004579 240 HCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA-HHD 318 (744)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~-~~~ 318 (744)
+|+++|+... ..++.++||||+||||+++++ ++++|+++|||||+|||++||||++|++|+++++. |++
T Consensus 283 ~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~-~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~ 352 (758)
T PLN02352 283 VCKLCPRLHK---------KFPTLFAHHQKTITVDTRAND-SISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQ 352 (758)
T ss_pred EEeecccccc---------ccccccccccceEEEccCCCC-CccccceEEEEcceeccCCccCCccCCcccccccccccc
Confidence 9999987642 356789999999999997553 23478899999999999999999999999999986 679
Q ss_pred CCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCcee
Q 004579 319 DFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNV 398 (744)
Q Consensus 319 d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~v 398 (744)
||+|++|.++..+.++||+||||+||+|+||||+||+.||+||||++++.+.+.+..++.++..++. ..+.+.++|+|
T Consensus 353 Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l~p~~~~~~~~~~p~--~~~~~~~~w~V 430 (758)
T PLN02352 353 DFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVLVPTSSIRNLVHQPG--SSESNNRNWKV 430 (758)
T ss_pred cccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCccccCCcccccccccCCC--CCcccCCcccc
Confidence 9999999988778889999999999999999999999999999999998766555444443332111 11235689999
Q ss_pred eeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhc
Q 004579 399 QLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINAL 478 (744)
Q Consensus 399 Qv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~ 478 (744)
|++||++.|++.+||.. ...++||++||++||++||||||||||||++++++|+++ ++.++.
T Consensus 431 Qv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~----~~~~~~ 492 (758)
T PLN02352 431 QVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKD----NHCGCT 492 (758)
T ss_pred eEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccc----cccchh
Confidence 99999999999999852 235899999999999999999999999999999999887 788999
Q ss_pred ccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeec
Q 004579 479 HLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCL 558 (744)
Q Consensus 479 n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l 558 (744)
|+||++|+++|+++++++++|+||||+|+||+|.+++.++|+||+||++||+|||.+|.++|+++|.+.+|+|||+||||
T Consensus 493 N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL 572 (758)
T PLN02352 493 NLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCL 572 (758)
T ss_pred cchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987789999999999
Q ss_pred CCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccC
Q 004579 559 GNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLST 638 (744)
Q Consensus 559 ~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~ 638 (744)
||||.+..++|.+...|...+.|..+|++||||||||||+|||||++++|||||||+|||.|+|||||+|+++|+.+..+
T Consensus 573 ~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~ 652 (758)
T PLN02352 573 ANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTN 652 (758)
T ss_pred cccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCC
Confidence 99998877888776677777888999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCc-ceecCccccCCCCCcccC
Q 004579 639 RVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPG-HLLRYPIGVSGEGDVTEL 717 (744)
Q Consensus 639 ~~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g-~L~~~p~~~~~~~~~~~~ 717 (744)
...++++++|||+||+||||+.++.|.+|+|+||++++|++|++||++|+++++ ++|+| ||++||+.|++||+|++|
T Consensus 653 -~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~-~~~~g~hl~~yp~~v~~~g~v~~l 730 (758)
T PLN02352 653 -TNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEV-VDMEGVHLVNYPISVTKDGAVEDL 730 (758)
T ss_pred -cccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchh-ccCCCcccccCCeEecCCcceeec
Confidence 345689999999999999999999999999999999999999999999999997 78999 999999999999999999
Q ss_pred -CCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 718 -PGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 718 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
||+|+||||+|+|||++|.+||++|||
T Consensus 731 ~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 731 ADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCcCCCCCCCceeccccccCCccccC
Confidence 699999999999999999999999997
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-155 Score=1317.21 Aligned_cols=676 Identities=51% Similarity=0.870 Sum_probs=623.7
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEee
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 84 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf~ 84 (744)
-.+|.|+++|++.|+|.+..++|+||+++++| +.++|.+++|+.++++|..+++|++|++.++++++.+..+.+.++|+
T Consensus 161 ~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 161 LENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred cccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCCcccceEEeeE
Confidence 48999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccc-cccCCccccccccccCCeeeEcccccCCCCCCCccccCCCcccC-hhhHHHHHHHHHHhcccEEE
Q 004579 85 DVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYE-PHRCWEDIFDAITNARHMIY 162 (744)
Q Consensus 85 p~~~~~~w~~~i~~-~~~~gv~~~~~~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~-~~~~~~~l~~aI~~Ak~~I~ 162 (744)
+......|..++.+ ..+.|++.++|+++.||.|++|||+|++++|+|.+++++|++|. +..||+++++||++||+.||
T Consensus 241 ~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~dAI~~Ar~~Iy 320 (887)
T KOG1329|consen 241 PMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVADAIENARREIY 320 (887)
T ss_pred eechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHHHHHHhhhhEEE
Confidence 99999999999998 89999999999999999999999999999999999999999665 56799999999999999999
Q ss_pred EEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEE
Q 004579 163 ITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCI 242 (744)
Q Consensus 163 I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~ 242 (744)
|++||++|++||+|+...+ .+.||+++||+||++||+|+|||||++++... .+++++++..+++|++|+|.
T Consensus 321 ItgWwl~pel~L~Rp~~~~---~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~------i~S~~~k~~l~~lH~nV~vl 391 (887)
T KOG1329|consen 321 ITGWWLSPELYLVRPPKGP---NDWRLDELLKRKAEEGVRVLILVWKDVTSALG------INSHYEKTRLFFLHPNVKVL 391 (887)
T ss_pred EeccccCceEEEEccCCCC---CceEHHHHHHHHHhCCcEEEEEEeccchhccc------cCchhHHHHHhhcCCCeEEE
Confidence 9999999999999987642 48999999999999999999999999998754 34688899999999999999
Q ss_pred EcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCC
Q 004579 243 LCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQ 322 (744)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~ 322 (744)
+||+++.++. .++|+||||+||||.+ +|||||+|||+|||||++|+||+++.+.|++||+|
T Consensus 392 r~P~~~~~~~--------~~~wtHHeK~VVVD~~-----------v~fvGGlDLC~GRYDT~eH~L~d~~~~~~gkDy~n 452 (887)
T KOG1329|consen 392 RCPRHPGSGP--------TTLWTHHEKLVVVDQE-----------VAFVGGLDLCDGRYDTPEHPLFDTLQTWHGKDYHN 452 (887)
T ss_pred ECCCCcCCCC--------ceEEecceEEEEEcce-----------eccccceeccccccCCccccccccccccccccccC
Confidence 9999876431 3689999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCC--cCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCc-----ccccccccCCCCCCCCCCCCCCCCCC
Q 004579 323 PNFPGAS--IEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKD-----VLVHLRELGDIIIPPSPVMYPDDHDT 395 (744)
Q Consensus 323 ~~~~~~~--~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~-----~l~~~~~~~~~~~p~~~~~~~~~~~~ 395 (744)
|+|.++. .+.++|||||||+||+|.||+|+||++||+||||+++..+ .+..+.+.+++..|+.+ .+++++.
T Consensus 453 ~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~~~~~~~~~--~~~~~e~ 530 (887)
T KOG1329|consen 453 PNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPISDITGPSEP--NEEDPES 530 (887)
T ss_pred cccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChhhhcCCCCc--ccccccc
Confidence 9999865 6788999999999999999999999999999999997531 22122223333334332 3467889
Q ss_pred ceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchh
Q 004579 396 WNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEI 475 (744)
Q Consensus 396 ~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~ 475 (744)
|++|++||++++++.+ ++..+++|++|++...+|+|||+||+++|++||||||||||||+++++.|..
T Consensus 531 ~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-------- 598 (887)
T KOG1329|consen 531 WHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-------- 598 (887)
T ss_pred ccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc--------
Confidence 9999999999998766 7888899999999999999999999999999999999999999999998764
Q ss_pred hhcccchHHHHHHHHHHHHhCCceEEEEEecCCC--CC--CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCC-CCCC
Q 004579 476 NALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EG--FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM-EDPR 550 (744)
Q Consensus 476 ~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p--~g--~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~-~~p~ 550 (744)
..|.++++||++|++|+++|++|+||||||+|| || .+++.++|+||+||+|||+|||++|+++|++.|++ .+|.
T Consensus 599 -~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi 677 (887)
T KOG1329|consen 599 -VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYI 677 (887)
T ss_pred -ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccc
Confidence 368889999999999999999999999999999 99 88999999999999999999999999999999998 6799
Q ss_pred CceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEe
Q 004579 551 NYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGG 630 (744)
Q Consensus 551 ~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i 630 (744)
+|++|+|++++|.. +++.++||||||||+|||||+++||||||||+|||.|+|||||||++
T Consensus 678 ~f~~lr~~g~~e~~-------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~ 738 (887)
T KOG1329|consen 678 DFLGLRCLGNREEQ-------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGI 738 (887)
T ss_pred eeeeeeeeeccccc-------------------cccceEEEEEEeeeeEEecCCEEEEeecccchhhccCCccceeEEEE
Confidence 99999999998641 13456899999999999999999999999999999999999999999
Q ss_pred ecCCcccCC--CCccchHHHHHHHHHHHhcCCCccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCcccc
Q 004579 631 YQPYHLSTR--VPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGV 708 (744)
Q Consensus 631 ~d~~~~~~~--~~~~~~~~~lR~~Lw~ehlG~~~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~ 708 (744)
||+.++++. +.+.+|+++|||+||+||||+.++.|.+|++++|.+.++.+.+++|..|+++.. +..+|||+.||+++
T Consensus 739 ~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~-~~y~~~f~~yP~~~ 817 (887)
T KOG1329|consen 739 YDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARNT-TIYEGHFRCYPIDV 817 (887)
T ss_pred ecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhhh-hhhhceEEEccccc
Confidence 999998865 456799999999999999999999999999999999999999999999999996 77999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCceecccCCCCCCCCCC
Q 004579 709 SGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 744 (744)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (744)
+.+|+++++||+++|||+++++.|.++..+|++||+
T Consensus 818 ~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 818 VRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred ccCcceeecCCccccccccccccccccccCCccccc
Confidence 999999999999999999999999999999999986
|
|
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-98 Score=871.78 Aligned_cols=543 Identities=30% Similarity=0.495 Sum_probs=414.4
Q ss_pred EEEEeecccccccccccccccc------cCCcc--ccccccc----cCCeeeEcccccCCCCCCCccccCCCcccChhhH
Q 004579 79 VKLQYFDVTKDRSWARGIRSAK------YPGVP--FTFYPQR----KGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRC 146 (744)
Q Consensus 79 V~lqf~p~~~~~~w~~~i~~~~------~~gv~--~~~~~~r----~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~ 146 (744)
+.++.........|...|.... +.+.- .+|+|.| .||++++|.|| .++
T Consensus 286 l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~SFAP~r~~~~~gN~vk~LvDG--------------------~dy 345 (1068)
T PLN02866 286 IRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTEDGSQAQWFIDG--------------------HAA 345 (1068)
T ss_pred EEEEECCHHHHHHHHHHHHHHHhccCccccccCcCCCcCCCccccCCCCEEEEEeCH--------------------HHH
Confidence 3444555555677887765421 11211 2455665 57777777774 467
Q ss_pred HHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCCC
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATH 226 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~ 226 (744)
|++|++||++||++|+|++||++|++||+|+... ..+.+|+++|++||+|||+||||+||.+++.....
T Consensus 346 F~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D---~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~-------- 414 (1068)
T PLN02866 346 FEAIASAIENAKSEIFITGWWLCPELYLRRPFHD---HESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN-------- 414 (1068)
T ss_pred HHHHHHHHHhcccEEEEEEccCCceEEEEecCCC---chHHHHHHHHHHHHHCCCEEEEEEECccccccccC--------
Confidence 8999999999999999999999999999985321 26899999999999999999999999987531111
Q ss_pred cHHHHHHh--cCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 227 DEETEKFF--QGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 227 ~~~~~~~l--~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
+..+.+.| .++||+|..+|.... ....++|||||+||||++ +||+||+|||.|||||+
T Consensus 415 S~~~k~~L~~lh~gI~V~r~P~~~~---------~~~ln~RhHRKIVVIDg~-----------IAFvGGiNLc~GRWDT~ 474 (1068)
T PLN02866 415 SVYSKRRLLGIHENVKVLRYPDHFS---------SGVYLWSHHEKLVIVDYQ-----------ICFIGGLDLCFGRYDTP 474 (1068)
T ss_pred chhhHHHHHHhCCCeEEEecCcccc---------cCcccccCCCCeEEECCC-----------EEEecCcccCCCccCCc
Confidence 11122223 367999876543210 124689999999999999 99999999999999999
Q ss_pred Ccccccccc-ccCCCCCCCCCCCCC----------CcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcc---
Q 004579 305 FHSLFRTLD-TAHHDDFHQPNFPGA----------SIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDV--- 370 (744)
Q Consensus 305 ~H~l~~~l~-~~~~~d~~~~~~~~~----------~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~--- 370 (744)
+|++.+... -.+++||.||..... -.+...|||||||+||+|+||+|+||+++|++|||.+++...
T Consensus 475 ~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~ 554 (1068)
T PLN02866 475 EHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNE 554 (1068)
T ss_pred ccccccccccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccc
Confidence 999866432 346789988754220 012446789999999999999999999999999998875321
Q ss_pred -----ccccc-----------------------------------------ccCCCCCCCCCCC----------------
Q 004579 371 -----LVHLR-----------------------------------------ELGDIIIPPSPVM---------------- 388 (744)
Q Consensus 371 -----l~~~~-----------------------------------------~~~~~~~p~~~~~---------------- 388 (744)
+.+.. .++ ++.|.++..
T Consensus 555 ~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~~~~~~~~~~~ 633 (1068)
T PLN02866 555 QAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGGGHKLNGMNST 633 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCccccccccccccccccccc
Confidence 00000 000 011110000
Q ss_pred ---------------------------------------------------------------CC------CCCCCceee
Q 004579 389 ---------------------------------------------------------------YP------DDHDTWNVQ 399 (744)
Q Consensus 389 ---------------------------------------------------------------~~------~~~~~~~vQ 399 (744)
.+ ...+++.+|
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~Q 713 (1068)
T PLN02866 634 NGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQ 713 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEE
Confidence 00 012468899
Q ss_pred eeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcc
Q 004579 400 LFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALH 479 (744)
Q Consensus 400 v~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n 479 (744)
|+||+..||+ | -..+|+||++||+++|++||||||||||||++++.+ +..+.|
T Consensus 714 ivRS~~~WS~-----------------G-~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~---------~~~i~N 766 (1068)
T PLN02866 714 VIRSVSQWSA-----------------G-TSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSG---------DDTIQN 766 (1068)
T ss_pred EEeecccccC-----------------C-CCchHHHHHHHHHHHHHhcccEEEEecccccccccc---------cccccc
Confidence 9999888764 1 112599999999999999999999999999987542 235689
Q ss_pred cchHHHHHHHHHHHHhCCceEEEEEecCCCC--C-CC--CCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceE
Q 004579 480 LIPKELSLKIVSKIEAGERFTVYIVVPMWPE--G-FP--ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLT 554 (744)
Q Consensus 480 ~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~--g-~~--~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~ 554 (744)
+|+.+|+++|++|+++|++|+|+||||++|+ | .+ ++.++++||+||++||++|+++|+++|++++ ..+|.||++
T Consensus 767 ~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~-g~~p~dYis 845 (1068)
T PLN02866 767 RVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLL-GPKTHDYIS 845 (1068)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHh-CCCHHHeEe
Confidence 9999999999999999999999999999997 3 22 3468999999999999999999999999853 247899999
Q ss_pred EeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 555 FFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 555 ~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
||||||++....+ .| +. .++||||||+|||||++++|||||||+|||.|+|||||++++.|++
T Consensus 846 f~~LRn~~~l~~~--~~---------~v------teqIYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~ 908 (1068)
T PLN02866 846 FYGLRAYGRLFEG--GP---------LA------TSQIYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKE 908 (1068)
T ss_pred eecccccccccCC--Cc---------cc------ceeeEEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeeccc
Confidence 9999998654100 01 11 2369999999999999999999999999999999999999999998
Q ss_pred cccCC--C---CccchHHHHHHHHHHHhcCCCcc---ccCCCCcHHHHHH-HHHHHHHhHhhhc----------------
Q 004579 635 HLSTR--V---PARGQIHGFRMSLWYEHLGMLDD---TFLQPESSECVKK-VNQIAERYWDLYS---------------- 689 (744)
Q Consensus 635 ~~~~~--~---~~~~~~~~lR~~Lw~ehlG~~~~---~~~~p~s~~~~~~-~~~~a~~n~~~~~---------------- 689 (744)
++.+. + .+++||++||++||+||||+..+ .+.||.+.++++. |+..|..|.+.|.
T Consensus 909 ~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~ 988 (1068)
T PLN02866 909 FVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAA 988 (1068)
T ss_pred ccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHH
Confidence 77543 1 56789999999999999999753 5679999988965 8999999997761
Q ss_pred -----c----------------------------------cccCCCCCcceecCccccCCCCCcccCCC
Q 004579 690 -----S----------------------------------ESLEHDLPGHLLRYPIGVSGEGDVTELPG 719 (744)
Q Consensus 690 -----~----------------------------------~~~~~~~~g~L~~~p~~~~~~~~~~~~~~ 719 (744)
+ +.+ ++++|||+.||+++.++.+++|.-+
T Consensus 989 ~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l-~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 989 LRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERL-KSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHHHhhhcccccCccccccccccccccccccccchhhhHHHHH-hhceEEEEechhhhhhhccCCCCcC
Confidence 0 112 5789999999999999998877655
|
|
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=488.40 Aligned_cols=385 Identities=21% Similarity=0.238 Sum_probs=279.9
Q ss_pred ceEEEEEEeecccccccccccccccccCCcccccc-cc-ccCCee-eE-------cc-----cccCCCCC----------
Q 004579 75 SKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFY-PQ-RKGCKV-SL-------YQ-----DAHVPDNF---------- 129 (744)
Q Consensus 75 ~~IrV~lqf~p~~~~~~w~~~i~~~~~~gv~~~~~-~~-r~G~~v-~l-------~~-----d~~~~~~~---------- 129 (744)
..+++.++.+++....+|+..|...|+.|++.|++ .. +.+.+. +. +. ........
T Consensus 44 ~~~~i~~~~r~p~~~~aWl~~i~~~P~~G~~lYl~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
T PRK12452 44 ISFVIFIENRSPQSTLAWFLVLALLPVVGVLLYSIFGRSRWRRKKHLHRSEEQRKLFREILEGRRLELSLKVPLSERSVH 123 (509)
T ss_pred HHHhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhHHH
Confidence 33455666788888999999999999999999886 22 111111 00 00 00000000
Q ss_pred -------CCccccCCCcccC----hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhh
Q 004579 130 -------VPEIPLAGGKYYE----PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKAS 198 (744)
Q Consensus 130 -------~p~~~~~~g~~~~----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~ 198 (744)
..+.|+..|+..+ .++.|++++++|++||++|+|+.|++. ++. .+..+.++|++||+
T Consensus 124 l~~~~~~~~~~p~~~~n~~~ll~~g~~~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~~i~~aL~~aa~ 191 (509)
T PRK12452 124 LTEVVQKFGGGPAADRTTTKLLTNGDQTFSEILQAIEQAKHHIHIQYYIYK-------SDE-----IGTKVRDALIKKAK 191 (509)
T ss_pred HHHHHHhccCCcccCCCEEEEeCCHHHHHHHHHHHHHHhCCEEEEEEEEEe-------CCc-----HHHHHHHHHHHHHH
Confidence 0145666677655 257999999999999999999998763 344 58999999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCC
Q 004579 199 EGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMP 278 (744)
Q Consensus 199 rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~ 278 (744)
|||+||||+ |+.||... .....+.|+++||+|..+.+.... + ...+.++|||||++||||+
T Consensus 192 rGV~VRiL~-D~~Gs~~~----------~~~~~~~L~~aGi~v~~f~P~~~~---~---~~~~~n~RnHRKi~VIDg~-- 252 (509)
T PRK12452 192 DGVIVRFLY-DGLGSNTL----------RRRFLQPMKEAGIEIVEFDPIFSA---W---LLETVNYRNHRKIVIVDGE-- 252 (509)
T ss_pred CCCEEEEEE-ECCCCCCC----------CHHHHHHHHhCCeEEEEecCcccc---c---ccccccCCCCCeEEEEcCC--
Confidence 999999997 99998522 135678899999999887543110 0 1234689999999999999
Q ss_pred CCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHH
Q 004579 279 NGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNF 358 (744)
Q Consensus 279 ~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F 358 (744)
+||+||+|+++.+. .. ..+..+|||+|++++||+|.+++..|
T Consensus 253 ---------ia~~GG~Ni~d~y~-~~----------------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F 294 (509)
T PRK12452 253 ---------IGFTGGLNVGDEYL-GR----------------------------SKKFPVWRDSHLKVEGKALYKLQAIF 294 (509)
T ss_pred ---------EEEeCCcccchhhc-CC----------------------------CCCCCCceEEEEEEECHHHHHHHHHH
Confidence 99999999999643 21 12346899999999999999999999
Q ss_pred HHHHHHhcCCcccccccccC-CCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHH
Q 004579 359 EQRWRKQGGKDVLVHLRELG-DIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQ 437 (744)
Q Consensus 359 ~~rW~~~~~~~~l~~~~~~~-~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~ 437 (744)
.++|+.+++........... ....|+. +...+...+|++.|- +. ..+.+|.
T Consensus 295 ~~dW~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~sg-----------------------p~-~~~~~i~ 346 (509)
T PRK12452 295 LEDWLYASSGLNTYSWDPFMNRQYFPGK----EISNAEGAVQIVASG-----------------------PS-SDDKSIR 346 (509)
T ss_pred HHHHHHhhCcccccccccccchhcCCCc----cccCCCeEEEEEeCC-----------------------CC-chhHHHH
Confidence 99999886531110000000 0000110 111234568888872 11 2357899
Q ss_pred HHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCch
Q 004579 438 DAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGS 517 (744)
Q Consensus 438 ~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~ 517 (744)
++|+++|.+||++|||+||||++. + .+..++..|++|| |+|+|++|..+
T Consensus 347 ~~~l~~I~~A~~~I~I~tpYf~pd------~---------------~l~~aL~~Aa~rG--V~Vrii~p~~~-------- 395 (509)
T PRK12452 347 NTLLAVMGSAKKSIWIATPYFIPD------Q---------------ETLTLLRLSAISG--IDVRILYPGKS-------- 395 (509)
T ss_pred HHHHHHHHHhhhEEEEECCccCCC------H---------------HHHHHHHHHHHcC--CEEEEEcCCCC--------
Confidence 999999999999999999999953 2 3456677777899 99999999743
Q ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeee
Q 004579 518 VQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAK 597 (744)
Q Consensus 518 ~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK 597 (744)
++.+++|+.++ +++.|+++|+++ ++|.+ .++|||
T Consensus 396 D~~~~~~a~~~-------~~~~L~~aGv~I-------------------~~y~~--------------------~~lHaK 429 (509)
T PRK12452 396 DSIISDQASQS-------YFTPLLKAGASI-------------------YSYKD--------------------GFMHAK 429 (509)
T ss_pred ChHHHHHHHHH-------HHHHHHHcCCEE-------------------EEecC--------------------CCeeee
Confidence 34555666554 678999999986 35654 489999
Q ss_pred EEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 598 MMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 598 ~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
+|||||++++|||+|||.||+..| +|+++.++++..
T Consensus 430 ~~ivD~~~a~vGS~Nld~RS~~~n--~E~~~~i~~~~~ 465 (509)
T PRK12452 430 IVLVDDKIATIGTANMDVRSFELN--YEIISVLYESET 465 (509)
T ss_pred EEEECCCEEEEeCcccCHhHhhhh--hhccEEEECHHH
Confidence 999999999999999999999866 999999998754
|
|
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-53 Score=479.35 Aligned_cols=382 Identities=21% Similarity=0.321 Sum_probs=279.6
Q ss_pred ceEEEEEEeecccccccccccccccccCCcccccc-cc-ccCCee-eE-------cc---c---ccCC--C-C-------
Q 004579 75 SKIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFY-PQ-RKGCKV-SL-------YQ---D---AHVP--D-N------- 128 (744)
Q Consensus 75 ~~IrV~lqf~p~~~~~~w~~~i~~~~~~gv~~~~~-~~-r~G~~v-~l-------~~---d---~~~~--~-~------- 128 (744)
..+++.++.+.+....+|+..|...|+.|++.|++ .. +.+.+. +. +. . .+.. . .
T Consensus 20 ~~~~i~~~~r~~~~~~aWl~~i~~~P~~G~~lY~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (483)
T PRK01642 20 VTLRILMKRRTVQGAIAWLLILYILPYVGIIAYLLFGELYLGKRRAERARLMWPSTAKWLRDLKACKHIFAEENSEVAAP 99 (483)
T ss_pred HHHhhHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHhhhhhhhhhccccCchhHHH
Confidence 34556677788888999999999999999999886 22 111110 00 00 0 0000 0 0
Q ss_pred ------CCCccccCCCcccC----hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhh
Q 004579 129 ------FVPEIPLAGGKYYE----PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKAS 198 (744)
Q Consensus 129 ------~~p~~~~~~g~~~~----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~ 198 (744)
-..+.|+..|+..+ .++.|++|+++|++||++|+|+.|++ +++. .+.++.++|++||+
T Consensus 100 ~~~~~~~~~~~~~~~~n~v~ll~~g~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~-----~g~~i~~aL~~aa~ 167 (483)
T PRK01642 100 LFRLCERLQGIPGLKGNQLRLLTNGDETFQAIIRDIELARHYILMEFYIW-------RPDG-----LGDQVAEALIAAAK 167 (483)
T ss_pred HHHHHHhccCCCccCCCEEEEEcCHHHHHHHHHHHHHHhhcEEEEEEEEE-------ccCC-----cHHHHHHHHHHHHH
Confidence 00145666777655 26799999999999999999999876 3343 58999999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEc-CCCCCCCCcceeeecccccccCceeEEEEcCCC
Q 004579 199 EGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILC-PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPM 277 (744)
Q Consensus 199 rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~-~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~ 277 (744)
|||+||||+ |+.|+..+. .....+.|+++||++..+ |..+. . ....+.++|+|||++|||++
T Consensus 168 rGV~VriL~-D~~Gs~~~~---------~~~~~~~L~~~Gi~v~~~~p~~~~---~---~~~~~~n~RnHrKi~VIDg~- 230 (483)
T PRK01642 168 RGVRVRLLY-DSIGSFAFF---------RSPYPEELRNAGVEVVEFLKVNLG---R---VFRRRLDLRNHRKIVVIDGY- 230 (483)
T ss_pred CCCEEEEEE-ECCCCCCCC---------cHHHHHHHHHCCCEEEEecCCCcc---c---ccccccccccCceEEEEcCC-
Confidence 999999996 999986332 123677899999999877 32111 0 01235688999999999999
Q ss_pred CCCCCcccceEEEEcccccCC-CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHH
Q 004579 278 PNGDPERRRIMSFVGGIDLCD-GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLF 356 (744)
Q Consensus 278 ~~~~~~~~~~vAfvGGinL~~-~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~ 356 (744)
+||+||+|+++ .+... .....+|||+|++++||+|.+++.
T Consensus 231 ----------ia~~Gg~Ni~d~~y~~~-----------------------------~~~~~~w~D~~~~i~Gp~v~~l~~ 271 (483)
T PRK01642 231 ----------IAYTGSMNVVDPEYFKQ-----------------------------DPGVGQWRDTHVRIEGPVVTALQL 271 (483)
T ss_pred ----------EEEeCCcccCCHHHhCC-----------------------------CCCCCCcEEEEEEEEcHHHHHHHH
Confidence 99999999999 54321 122468999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHH
Q 004579 357 NFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSI 436 (744)
Q Consensus 357 ~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI 436 (744)
.|.++|+.++++........+ ..++ . ...+...+|++.|- +. ..+.++
T Consensus 272 ~F~~dW~~~~~~~~~~~~~~~---~~~~----~-~~~~~~~~qi~~sg-----------------------P~-~~~~~~ 319 (483)
T PRK01642 272 IFAEDWEWETGERILPPPPDV---LIMP----F-EEASGHTVQVIASG-----------------------PG-DPEETI 319 (483)
T ss_pred HHHHHHHHHhCcccCCCCccc---ccCC----c-cCCCCceEEEEeCC-----------------------CC-ChhhHH
Confidence 999999988765211110000 0000 0 11234568888762 22 235689
Q ss_pred HHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCc
Q 004579 437 QDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESG 516 (744)
Q Consensus 437 ~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~ 516 (744)
+++|+++|.+||++|||++|||++. . .+..+|..|++|| |+|+|++|..+
T Consensus 320 ~~~~~~~I~~A~~~I~I~tpYfip~------~---------------~i~~aL~~Aa~rG--V~Vril~p~~~------- 369 (483)
T PRK01642 320 HQFLLTAIYSARERLWITTPYFVPD------E---------------DLLAALKTAALRG--VDVRIIIPSKN------- 369 (483)
T ss_pred HHHHHHHHHHhccEEEEEcCCcCCC------H---------------HHHHHHHHHHHcC--CEEEEEeCCCC-------
Confidence 9999999999999999999999953 2 3556777788899 99999999754
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeee
Q 004579 517 SVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHA 596 (744)
Q Consensus 517 ~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHS 596 (744)
++.+++|+.++ +++.|.++|+++ ++|.+ .++||
T Consensus 370 -d~~~~~~~~~~-------~~~~L~~~Gv~I-------------------~~y~~--------------------~~~Ha 402 (483)
T PRK01642 370 -DSLLVFWASRA-------FFTELLEAGVKI-------------------YRYEG--------------------GLLHT 402 (483)
T ss_pred -CcHHHHHHHHH-------HHHHHHHcCCEE-------------------EEeCC--------------------CceEe
Confidence 23456666655 578899999976 34554 38999
Q ss_pred eEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 597 KMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 597 K~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
|+|||||++++|||+|||.||+..| .|+++.++|+..
T Consensus 403 K~~ivD~~~~~vGS~N~d~rS~~~N--~E~~~~i~d~~~ 439 (483)
T PRK01642 403 KSVLVDDELALVGTVNLDMRSFWLN--FEITLVIDDTGF 439 (483)
T ss_pred EEEEECCCEEEeeCCcCCHhHHhhh--hcceEEEECHHH
Confidence 9999999999999999999999866 999999998764
|
|
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=438.64 Aligned_cols=342 Identities=21% Similarity=0.263 Sum_probs=255.0
Q ss_pred ccccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHH
Q 004579 110 PQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIML 189 (744)
Q Consensus 110 ~~r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l 189 (744)
+++.||+++++.|| +++|++++++|++||++|+|++|+|. ++. .+..|
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~~l 50 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILF-------EDK-----VGKQL 50 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------cCc-----hHHHH
Confidence 57889999999985 46789999999999999999999874 233 58999
Q ss_pred HHHHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCcee
Q 004579 190 GELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQK 269 (744)
Q Consensus 190 ~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqK 269 (744)
.++|++||+|||+||||+ |..|+..+ +....+.|+++||++..+.+.+. + .......+.++|+|
T Consensus 51 ~~aL~~aa~rGV~Vril~-D~~gs~~~----------~~~~~~~L~~aGv~v~~~~p~~~----~-~~~~~~~~~R~HrK 114 (411)
T PRK11263 51 HAALLAAAQRGVKVEVLV-DGYGSPDL----------SDEFVNELTAAGVRFRYFDPRPR----L-LGMRTNLFRRMHRK 114 (411)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHHCCeEEEEeCCccc----c-cccccccccCCcce
Confidence 999999999999999997 99887532 23567889999999987754321 1 11122334699999
Q ss_pred EEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh
Q 004579 270 IVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP 349 (744)
Q Consensus 270 ivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp 349 (744)
++|||++ +|||||+|+++.++.. .+..+|+|+|++|+||
T Consensus 115 iiVIDg~-----------~a~vGg~N~~~~~~~~------------------------------~g~~~w~D~~v~i~Gp 153 (411)
T PRK11263 115 IVVIDGR-----------IAFVGGINYSADHLSD------------------------------YGPEAKQDYAVEVEGP 153 (411)
T ss_pred EEEEcCC-----------EEEEcCeEchHhhccc------------------------------cCCCCceEEEEEEECH
Confidence 9999999 9999999999764310 1124699999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCC
Q 004579 350 IAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 429 (744)
Q Consensus 350 aa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~ 429 (744)
+|.+++..|.+.|......... ..+. ..++ .+...+...+|++.+- +
T Consensus 154 ~V~~l~~~f~~~w~~~~~~~~~--~~~~---~~~~----~~~~~g~~~~~~v~~~------------------------p 200 (411)
T PRK11263 154 VVADIHQFELEALPGQSAARRW--WRRH---HRAE----ENRQPGEAQALLVWRD------------------------N 200 (411)
T ss_pred HHHHHHHHHHHHHhhcccchhh--hccc---ccCc----ccCCCCCeEEEEEECC------------------------C
Confidence 9999999999999754211000 0000 0000 0112334456766541 1
Q ss_pred CcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCC
Q 004579 430 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 430 ~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p 509 (744)
......|+++|+.+|.+||+.|||+||||++. . .+..+|..|++|| |+|.||+|..|
T Consensus 201 ~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~------~---------------~l~~aL~~Aa~RG--V~V~ii~~~~~ 257 (411)
T PRK11263 201 EEHRDDIERHYLKALRQARREVIIANAYFFPG------Y---------------RLLRALRNAARRG--VRVRLILQGEP 257 (411)
T ss_pred cchHHHHHHHHHHHHHHhceEEEEEecCcCCC------H---------------HHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 12356899999999999999999999999953 2 3566777888899 99999999643
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 510 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 510 ~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
++.++.++.+. +++.|+++|+++ ++|.+
T Consensus 258 --------d~~~~~~a~~~-------~~~~Ll~~Gv~I-------------------~~y~~------------------ 285 (411)
T PRK11263 258 --------DMPIVRVGARL-------LYNYLLKGGVQI-------------------YEYCR------------------ 285 (411)
T ss_pred --------CcHHHHHHHHH-------HHHHHHHCCCEE-------------------EEecC------------------
Confidence 34566666554 678999999976 35544
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCcccCCCCccchHHHHHHHHHHHhcC
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLG 659 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~~~~~~~~~~~~~lR~~Lw~ehlG 659 (744)
.++|||+|||||++++|||+|||.|||..| +|+++.++|+.... ++.+...++++||.-
T Consensus 286 --~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a~-------~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 286 --RPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFNQ-------TLRDNLNGLIAADCQ 344 (411)
T ss_pred --CCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHHH-------HHHHHHHHHHHhhCE
Confidence 389999999999999999999999999766 99999999886532 245555666666643
|
|
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=349.59 Aligned_cols=336 Identities=25% Similarity=0.343 Sum_probs=241.0
Q ss_pred ccCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHH
Q 004579 112 RKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGE 191 (744)
Q Consensus 112 r~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~ 191 (744)
..++.++++.++ .+.|.+++++|++|+++|+++.|++ .++. .+..+.+
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~-------~~d~-----~~~~i~~ 104 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIW-------QDDE-----LGREILD 104 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEE-------eCCh-----hHHHHHH
Confidence 467777777763 4678999999999999999988765 3343 5899999
Q ss_pred HHHHhhhcCCeEEEEEeCCCccccccccccccCCCcHHHHHHhcCCCc-EEEEcCCCCCCCCcceeeecccccccCceeE
Q 004579 192 LLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDV-HCILCPRNPDDGGSFIQDIQISAMFTHHQKI 270 (744)
Q Consensus 192 lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gV-~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKi 270 (744)
+|.++|++||+||+|+ |+.++.... .......+++.++ ++..+.+... .. ......+.++|+|+
T Consensus 105 ~l~~~a~~gv~vr~l~-D~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~-~~----~~~~~~~~r~H~K~ 169 (438)
T COG1502 105 ALIEAAKRGVEVRLLL-DDIGSTRGL---------LKSLLALLKRAGIEEVRLFNPASP-RP----LRFRRLNRRLHRKI 169 (438)
T ss_pred HHHHHHHcCCEEEEEE-ecCCCcccc---------cHHHHHHHhcCCceEEEecCCccc-cc----chhhhhhccccceE
Confidence 9999999999999998 999873221 1356778889999 6665543311 00 11345688999999
Q ss_pred EEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChH
Q 004579 271 VVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI 350 (744)
Q Consensus 271 vVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpa 350 (744)
+|||+. ++|+||.|+.+.++... ....+|+|+++++.||+
T Consensus 170 ~viD~~-----------i~~vGg~N~~d~y~~~~-----------------------------~~~~~~~D~~~~~~g~~ 209 (438)
T COG1502 170 VVIDGK-----------VAFVGGANIGDEYFHKD-----------------------------KGLGYWRDLHVRITGPA 209 (438)
T ss_pred EEEcCC-----------EEEecCcccchhhhccC-----------------------------cCcccceeeeEEEECHH
Confidence 999999 99999999999865321 02348999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccCCCCCCCCC-CCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCC
Q 004579 351 AWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSP-VMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 429 (744)
Q Consensus 351 a~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~~-~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~ 429 (744)
|.++..+|.++|+........... . ..+..+ ...........+|++.+.+... . +.
T Consensus 210 v~~l~~~f~~~w~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--------~---------~~- 266 (438)
T COG1502 210 VADLARLFIQDWNLESGSSKPLLA--L---VRPPLQSLSLLPVGRGSTVQVLSSGPDKG--------L---------GS- 266 (438)
T ss_pred HHHHHHHHHHHhhhccCcCccccc--c---cccccccccccccccCcceEEEecCCccc--------c---------ch-
Confidence 999999999999987432110000 0 000000 0001112223367777643210 0 00
Q ss_pred CcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCC
Q 004579 430 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 430 ~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p 509 (744)
....+...|+.+|.+|+++|+|++|||++. . ++..++..+.++| |+|.|++|..
T Consensus 267 --~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~---------------~~~~al~~a~~~G--v~V~ii~~~~- 320 (438)
T COG1502 267 --ELIELNRLLLKAINSARESILIATPYFVPD------R---------------ELLAALKAAARRG--VDVRIIIPSL- 320 (438)
T ss_pred --hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H---------------HHHHHHHHHHhcC--CEEEEEeCCC-
Confidence 011245899999999999999999999963 2 4567788888899 8999999953
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 510 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 510 ~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
......+++|+.+. ++..|.+.|+++ ++|.+ +
T Consensus 321 -----~~~d~~~~~~~~~~-------~~~~l~~~gv~i-------------------~~~~~------g----------- 352 (438)
T COG1502 321 -----GANDSAIVHAAYRA-------YLKELLEAGVKV-------------------YEYPG------G----------- 352 (438)
T ss_pred -----CCCChHHHHHHHHH-------HHHHHHHhCCEE-------------------EEecC------C-----------
Confidence 12334455554443 688899999875 34433 0
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.++|+|+|||||++++|||+|||.||+.+| +|+++.++++..
T Consensus 353 --~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~ 394 (438)
T COG1502 353 --AFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPEL 394 (438)
T ss_pred --CcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHH
Confidence 389999999999999999999999999876 999999998843
|
|
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.06 Aligned_cols=326 Identities=15% Similarity=0.159 Sum_probs=214.5
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
..++.+.++|.+||++|+|+++.|.| ++.. ....|.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~-~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~---------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL------SDEV-GTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP---------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec------Cccc-cchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc----------
Confidence 46789999999999999999987653 1110 00137899999999999999999997 864311
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
....+.|+++||++..+++.. ....++|+|++|||++ ++|+||+|+.. |+-+
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~-----------~~~iGS~Nid~-rsl~- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT-----------HIYLGSANMDW-RSLT- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC-----------EEEEeCCcCCh-hhhh-
Confidence 133567888999998775321 1246799999999999 99999999965 4411
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee--eChHHHHHHHHHHHHHHHhcCCcccccccccCCCCC
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL--EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIII 382 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~ 382 (744)
..+|+++++ +||+|.+++..|.++|+..++.........++....
T Consensus 140 ---------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~~~~~~~~~~~~ 186 (424)
T PHA02820 140 ---------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPYNWKNFYPLYYN 186 (424)
T ss_pred ---------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCCccccccccccc
Confidence 124677777 799999999999999998753211000000000000
Q ss_pred CCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccc
Q 004579 383 PPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS 462 (744)
Q Consensus 383 p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~ 462 (744)
+..|.... ..+....|++.+.+. .. .+. ......++|+.+|.+||++|||+++||+|..
T Consensus 187 ~~~p~~~~-~~~~~~~~~~sssP~-----------~~------~~~---~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~ 245 (424)
T PHA02820 187 TDHPLSLN-VSGVPHSVFIASAPQ-----------QL------CTM---ERTNDLTALLSCIRNASKFVYVSVMNFIPII 245 (424)
T ss_pred cCCCcccc-cCCccceEEEeCCCh-----------hh------cCC---CCCchHHHHHHHHHHHhhEEEEEEcccccee
Confidence 00010001 111112334333211 00 000 0123579999999999999999999999873
Q ss_pred c-------ccccCCCCcchhhhcccchHHHHHHHHH-HHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHH
Q 004579 463 F-------AWSADGIKPEEINALHLIPKELSLKIVS-KIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYK 534 (744)
Q Consensus 463 ~-------~~~~~~~~~~~~~~~n~i~~~la~~ia~-a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~ 534 (744)
+ .|| .+-.+|.+ |++|| |+|+|++|.|++. ..+ .|+.+
T Consensus 246 ~~~~~~~~yw~-----------------~i~~AL~~AA~~RG--V~VriLvp~~~d~----~~~----~~a~~------- 291 (424)
T PHA02820 246 YSKAGKILFWP-----------------YIEDELRRAAIDRK--VSVKLLISCWQRS----SFI----MRNFL------- 291 (424)
T ss_pred eccCCcccchH-----------------HHHHHHHHHHHhCC--CEEEEEEeccCCC----Ccc----HHHHH-------
Confidence 2 122 34456653 56789 9999999987642 211 22222
Q ss_pred HHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCC
Q 004579 535 DVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANIN 614 (744)
Q Consensus 535 ~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin 614 (744)
..++.|.++|+++ ++++|-... +.+. .| +..++|||+||||| ++.|||||||
T Consensus 292 ~~l~~L~~~gv~I----~Vk~y~~p~--------~~~~-~~--------------~~~f~HaK~~vvD~-~a~IGTsN~D 343 (424)
T PHA02820 292 RSIAMLKSKNINI----EVKLFIVPD--------ADPP-IP--------------YSRVNHAKYMVTDK-TAYIGTSNWT 343 (424)
T ss_pred HHHHHHhccCceE----EEEEEEcCc--------cccc-CC--------------cceeeeeeEEEEcc-cEEEECCcCC
Confidence 2467888899987 566652210 1110 01 12599999999997 6999999999
Q ss_pred cccccCCCCcceEEEeecCC
Q 004579 615 QRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 615 ~RS~~g~rDsEi~l~i~d~~ 634 (744)
.|||..| .|+++.++++.
T Consensus 344 ~rsf~~n--~ev~~~i~~~~ 361 (424)
T PHA02820 344 GNYFTDT--CGVSINITPDD 361 (424)
T ss_pred HHHHhcc--CcEEEEEecCC
Confidence 9999987 99999998863
|
|
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.92 Aligned_cols=340 Identities=16% Similarity=0.121 Sum_probs=221.9
Q ss_pred cCCeeeEcccccCCCCCCCccccCCCcccChhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHH
Q 004579 113 KGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGEL 192 (744)
Q Consensus 113 ~G~~v~l~~d~~~~~~~~p~~~~~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~l 192 (744)
.+++++++.++ .++|++|+++|++|+++|+|++|++. +|+ .|..|.++
T Consensus 23 ~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~-------~D~-----~g~~il~A 70 (451)
T PRK09428 23 SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLE-------DDE-----AGREILDA 70 (451)
T ss_pred CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEec-------CCc-----hHHHHHHH
Confidence 56788888773 46889999999999999999998763 343 58999999
Q ss_pred HHHhhh--cCCeEEEEEeCCCcccc-ccccccccC-CCcHHHHHHhcCC--CcEEEEcCCCCCCCCcceeeecccccccC
Q 004579 193 LKKKAS--EGVRVCMLVWDDRTSVS-LLKKDGLMA-THDEETEKFFQGT--DVHCILCPRNPDDGGSFIQDIQISAMFTH 266 (744)
Q Consensus 193 L~~aA~--rGV~VriLvwD~~~s~~-~~~~~g~~~-~~~~~~~~~l~~~--gV~~~~~~~~~~~~~~~~~~~~~~~~~~h 266 (744)
|.+|++ +||+|+||+ |...+.. .+.. .. ..+..+.+.|+++ ||++.++.. |.. ....+.++
T Consensus 71 L~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~---~~~~~~~~~~~~l~~~~~gv~v~~f~~-p~~--------~~e~~gr~ 137 (451)
T PRK09428 71 LYQAKQQNPELDIKVLV-DWHRAQRGLIGA---AASNTNADWYCEMAQEYPGVDIPVYGV-PVN--------TREALGVL 137 (451)
T ss_pred HHHHHhcCCCcEEEEEE-Eccccccccccc---CCCCcCHHHHHHHHHhCCCceEEEcCC-ccc--------cchhhhhc
Confidence 999854 899999998 9852221 1110 10 1124566667654 699887732 210 12356789
Q ss_pred ceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee
Q 004579 267 HQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL 346 (744)
Q Consensus 267 HqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i 346 (744)
|+|++|||++ |+|+| .||.+.++.. ...+ ..|.+++|
T Consensus 138 HrKi~IiD~~-----------v~ysG-aNi~d~Yl~~-----------------------------~~~~--r~Dry~~i 174 (451)
T PRK09428 138 HLKGFIIDDT-----------VLYSG-ASLNNVYLHQ-----------------------------HDKY--RYDRYHLI 174 (451)
T ss_pred eeeEEEECCC-----------EEEec-ccccHHHhcC-----------------------------Cccc--CcceEEEE
Confidence 9999999999 99997 7999975421 0011 12668889
Q ss_pred eChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCCC-----------------CCCCCCCCCCceeeeeecccCCcc
Q 004579 347 EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPS-----------------PVMYPDDHDTWNVQLFRSIDGGAA 409 (744)
Q Consensus 347 ~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~~-----------------~~~~~~~~~~~~vQv~rS~~~~~~ 409 (744)
+||++.++...|.++|..+++........ ..|.. ....+...+.-.+++.+.+
T Consensus 175 ~g~~la~~~~~fi~~~~~~~~~v~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~p~~----- 244 (451)
T PRK09428 175 RNAELADSMVNFIQQNLLNSPAVNRLDQP-----NRPKTKEIKNDIRQFRQRLRDAAYQFQGQANNDELSVTPLV----- 244 (451)
T ss_pred eCchHHHHHHHHHHHHhhccCcccccccc-----ccccchhhHHHHHHHHHHHhhhccCcccccCCCCeEEeeee-----
Confidence 99999999999999998765421000000 00000 0000000011112222211
Q ss_pred cCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHH
Q 004579 410 FGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKI 489 (744)
Q Consensus 410 ~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~i 489 (744)
|.+ ....+.+.+..+|.+|++.|+|.||||+++ ..+..+|
T Consensus 245 -----------------g~g--~~~~l~~~~~~li~~A~~~i~I~TPYF~p~---------------------~~l~~~L 284 (451)
T PRK09428 245 -----------------GLG--KKNLLNKTIFHLMASAEQKLTICTPYFNLP---------------------AILVRNI 284 (451)
T ss_pred -----------------ccC--CchHHHHHHHHHHhccCcEEEEEeCCcCCC---------------------HHHHHHH
Confidence 111 125778999999999999999999999963 1356677
Q ss_pred HHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHH----H---HHHHHHcC---CCCCCCCceEEeecC
Q 004579 490 VSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKD----V---VQALRAKG---IMEDPRNYLTFFCLG 559 (744)
Q Consensus 490 a~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~----i---~~~L~~~G---v~~~p~~yl~~~~l~ 559 (744)
..|+++| ++|.||+|.....+--.++.+.++.+..+.+ +|.. + .+.|.++| +++
T Consensus 285 ~~a~~rG--v~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i------------ 348 (451)
T PRK09428 285 IRLLRRG--KKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRL------------ 348 (451)
T ss_pred HHHHhcC--CcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEE------------
Confidence 7888899 8899999974211111113344555544331 1211 1 22445555 432
Q ss_pred CcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 560 NREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 560 ~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
++|.+ ..+|||+|+|||+|++|||+|+|.||+. .|+|+++.++|+..
T Consensus 349 -------~~~~~--------------------~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~ 395 (451)
T PRK09428 349 -------WKDGD--------------------NSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQ 395 (451)
T ss_pred -------EecCC--------------------CcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChH
Confidence 34433 3799999999999999999999999996 55999999999863
|
|
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=318.46 Aligned_cols=316 Identities=20% Similarity=0.258 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
..|++++++|++||++|+|+.|++. ++++. .|.+|.++|++||+|||+||||+ |..++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~-----~g~~i~~aL~~aa~rGV~Vril~-D~~~~~---------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP-----EGRLILDKLKEAAESGVKVTILV-DEQSGD---------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc-----hHHHHHHHHHHhccCCCeEEEEe-cCCCCC----------
Confidence 5789999999999999999999732 13343 58999999999999999999997 976431
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
...+.|+++||++..++... .+..+.+|.|++|||++ +||+||+||+++++. .
T Consensus 90 ----~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~-----------~~y~Gg~Ni~~~~~~-~ 142 (369)
T PHA03003 90 ----KDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR-----------RCYIGNASLTGGSIS-T 142 (369)
T ss_pred ----ccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc-----------EEEEecCccCCcccC-c
Confidence 34578889999987654211 00012458899999999 999999999996432 1
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcCCcccccccccCCCCCCC
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPP 384 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~~~~~~p~ 384 (744)
. ...+.|+|. ||+|.+++..|.+.|+.++++....... ..+ ..|.
T Consensus 143 ~----------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-~~~-~~~~ 187 (369)
T PHA03003 143 I----------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-CAC-CLPV 187 (369)
T ss_pred c----------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-ccc-CCcc
Confidence 1 113579993 9999999999999999876542210000 000 0010
Q ss_pred CCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccc
Q 004579 385 SPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFA 464 (744)
Q Consensus 385 ~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~ 464 (744)
........+ ...+++.|. |.... .. ....++++|+++|.+||++|+|+++||+|....
T Consensus 188 ~~~~~~~~~--~~~~~~~s~-----------P~~~~------~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~ 245 (369)
T PHA03003 188 STKYHINNP--IGGVFFSDS-----------PEHLL------GY---SRTLDADVVLHKIKSAKKSIDLELLSLVPVIRE 245 (369)
T ss_pred cccccccCC--CcceEEecC-----------ChHHc------CC---CCCcCHHHHHHHHHHHhhEEEEEEeccccEEee
Confidence 000000000 111222221 11100 00 122578999999999999999999999864211
Q ss_pred cccCCCCcchhhhcccchHHHHHHHHHHH-HhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHc
Q 004579 465 WSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAK 543 (744)
Q Consensus 465 ~~~~~~~~~~~~~~n~i~~~la~~ia~a~-~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~ 543 (744)
++ . -.....+..+|.+|+ +|| |+|+|++|.+... + .. .+ .+++.|+++
T Consensus 246 --d~-----~----~~~~~~i~~AL~~AAa~RG--V~VRILv~~~~~~--~-~~--------~~-------~~~~~L~~~ 294 (369)
T PHA03003 246 --DD-----K----TTYWPDIYNALIRAAINRG--VKVRLLVGSWKKN--D-VY--------SM-------ASVKSLQAL 294 (369)
T ss_pred --CC-----C----CccHHHHHHHHHHHHHcCC--CEEEEEEecCCcC--C-ch--------hh-------hHHHHHHHc
Confidence 10 0 001235667777764 899 9999999975211 1 00 01 256789999
Q ss_pred CCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCC
Q 004579 544 GIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARD 623 (744)
Q Consensus 544 Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rD 623 (744)
|+... -.+++| +| ..|+|+|||||++++|||+||+.||+..+
T Consensus 295 G~~~~--i~vri~-----------~~-----------------------~~H~K~~VVD~~~a~iGS~N~d~~s~~~~-- 336 (369)
T PHA03003 295 CVGND--LSVKVF-----------RI-----------------------PNNTKLLIVDDEFAHITSANFDGTHYLHH-- 336 (369)
T ss_pred CCCCC--ceEeee-----------cC-----------------------CCCceEEEEcCCEEEEeccccCchhhccC--
Confidence 96420 001111 11 27999999999999999999999999765
Q ss_pred cceEEEeecCC
Q 004579 624 TEIAMGGYQPY 634 (744)
Q Consensus 624 sEi~l~i~d~~ 634 (744)
.|+++.++++.
T Consensus 337 ~e~~~~~~~~~ 347 (369)
T PHA03003 337 AFVSFNTIDKE 347 (369)
T ss_pred CCeEEecCChh
Confidence 99888766553
|
|
| >PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-27 Score=191.26 Aligned_cols=73 Identities=60% Similarity=1.133 Sum_probs=71.3
Q ss_pred ccccCCCCcHHHHHHHHHHHHHhHhhhcccccCCCCCcceecCccccCCCCCcccCCCCCCCCCCCCceecccC
Q 004579 662 DDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKS 735 (744)
Q Consensus 662 ~~~~~~p~s~~~~~~~~~~a~~n~~~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (744)
++.|.+|+|+||+++||++|++||++|+++++ ++|+|||++||+.|++||+|++|||+|+||||+|||||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~-~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEV-TDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhcccc-ccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 67899999999999999999999999999998 99999999999999999999999999999999999999986
|
Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif. |
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=199.89 Aligned_cols=270 Identities=16% Similarity=0.145 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHHhccc-----EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 004579 144 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 218 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~ 218 (744)
-+.|+.+++.|++|.+ +|.++-|.+. ...++.++|+.||++||+|+||+ +... .+-
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka--rfd- 407 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQTLYRTS---------------KDSPIVDALIEAAENGKQVTVLV-ELKA--RFD- 407 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEEEEEEec---------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc--ccc-
Confidence 4578889999999998 8999988653 25799999999999999999999 6542 111
Q ss_pred cccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCC
Q 004579 219 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 298 (744)
Q Consensus 219 ~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~ 298 (744)
...+..+.+.|+++||+++.-. ..+..|.|+++||++..+ +-+-.+++|+.|+..
T Consensus 408 -----e~~n~~~~~~L~~aGv~V~y~~----------------~~~k~HaK~~lid~~e~~----~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 408 -----EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG----GLRRYVHLGTGNYNP 462 (691)
T ss_pred -----HHHHHHHHHHHHHcCCEEEEcc----------------CCccceeEEEEEEeecCC----ceeEEEEEcCCCCCc
Confidence 1112356788999999986421 135799999999997222 333489999999876
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee-ChHHHHHHHHHHHHHHHhcCCccccccccc
Q 004579 299 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE-GPIAWDVLFNFEQRWRKQGGKDVLVHLREL 377 (744)
Q Consensus 299 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~-Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~ 377 (744)
... ..|.|+.+.+. +..+.|+...|...|....... +
T Consensus 463 ~s~-----------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~-------~ 500 (691)
T PRK05443 463 KTA-----------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK-------L 500 (691)
T ss_pred chh-----------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-------c
Confidence 411 35789999855 5689999999999865321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhccc----EEEE
Q 004579 378 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 453 (744)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~----~IyI 453 (744)
. .++-| | ......+.+.+...|.+||+ +|+|
T Consensus 501 ~--------------------~l~~s------------------------P-~~~~~~l~~~i~~ei~~Ak~G~~a~I~i 535 (691)
T PRK05443 501 R--------------------KLLVS------------------------P-FTLRERLLELIDREIANARAGKPARIIA 535 (691)
T ss_pred c--------------------EEeec------------------------C-ccHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 01100 0 11256788999999999999 9999
Q ss_pred eeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEe-------cCCCCCCCCCchhHHHHHHHH
Q 004579 454 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 526 (744)
Q Consensus 454 enqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~~i~~~~~ 526 (744)
.++||. |. .+..+|..|.++| |+|.+++ |..|+ .++...+
T Consensus 536 k~n~l~-------d~---------------~ii~aL~~As~~G--V~V~liVRGiC~l~pgipg-~sd~i~v-------- 582 (691)
T PRK05443 536 KMNSLV-------DP---------------QIIDALYEASQAG--VKIDLIVRGICCLRPGVPG-LSENIRV-------- 582 (691)
T ss_pred EcCCCC-------CH---------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCCC-CCCCEEE--------
Confidence 999964 22 4567788888899 7777777 33331 2222211
Q ss_pred hhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEE
Q 004579 527 RTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606 (744)
Q Consensus 527 rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~ 606 (744)
.+++..+++ ++++ +.|.+ . ||.++
T Consensus 583 -------~s~v~r~Le-h~rI-------------------y~f~~--------------------g---------d~~~~ 606 (691)
T PRK05443 583 -------RSIVGRFLE-HSRI-------------------YYFGN--------------------G---------GDEEV 606 (691)
T ss_pred -------HHHHHHHHh-cCEE-------------------EEEeC--------------------C---------CCcEE
Confidence 125566665 3444 12322 1 88999
Q ss_pred EEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 607 IIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 607 iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.||||||+.|||..| .|+++.++|+..
T Consensus 607 ~iGSAn~d~Rsl~~r--~Ev~~~i~d~~~ 633 (691)
T PRK05443 607 YISSADWMPRNLDRR--VEVLFPILDPRL 633 (691)
T ss_pred EEECCCCCcccccce--EEEeEEEeCHHH
Confidence 999999999999755 999999999863
|
|
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=197.01 Aligned_cols=270 Identities=16% Similarity=0.165 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHhccc-----EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 004579 144 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 218 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~ 218 (744)
-+.|+.+.+.|++|.+ +|.|+-|.+. ...++.++|.+||++|++|++|| +-.- . +.
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkA-r--fd 398 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTS---------------KDSPIIDALIEAAENGKEVTVVV-ELKA-R--FD 398 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEec---------------CCcHHHHHHHHHHHcCCEEEEEE-Eehh-h--cc
Confidence 4567889999999998 8999988763 24699999999999999999999 6211 1 00
Q ss_pred cccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCC
Q 004579 219 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 298 (744)
Q Consensus 219 ~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~ 298 (744)
...+-.+.+.|+++||+|+.-- ..+..|+|+++||.+..+ +-+-.+++|.-|...
T Consensus 399 -----e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~----~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 399 -----EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG----ELRRYVHLGTGNYHP 453 (672)
T ss_pred -----chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC----ceEEEEEecCCCCCC
Confidence 0113467788999999987511 246899999999986211 122256666555443
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeee-eeChHHHHHHHHHHHHHHHhcCCccccccccc
Q 004579 299 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSR-LEGPIAWDVLFNFEQRWRKQGGKDVLVHLREL 377 (744)
Q Consensus 299 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~-i~Gpaa~dl~~~F~~rW~~~~~~~~l~~~~~~ 377 (744)
. . ...|.|+++. ..+..+.|+...|..-|....... +
T Consensus 454 ~----------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~ 491 (672)
T TIGR03705 454 K----------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------F 491 (672)
T ss_pred c----------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------h
Confidence 2 0 1458999998 788899999999998775221100 0
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhccc----EEEE
Q 004579 378 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 453 (744)
Q Consensus 378 ~~~~~p~~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~----~IyI 453 (744)
. .|..+|. .....+.+.+.+.|.+||+ +|+|
T Consensus 492 ~--------------------------------------------~l~~~P~-~~~~~~~~~i~~ei~~Ak~g~~~~I~i 526 (672)
T TIGR03705 492 K--------------------------------------------HLLVSPF-TLRKRLLELIDREIENARAGKPARIIA 526 (672)
T ss_pred H--------------------------------------------HHHhCcc-hHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0111111 1356788889999999999 9999
Q ss_pred eeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEe-------cCCCCCCCCCchhHHHHHHHH
Q 004579 454 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 526 (744)
Q Consensus 454 enqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~~i~~~~~ 526 (744)
.++||. |. .+..+|..|.++| |+|.+++ |..| |.++...+
T Consensus 527 k~n~l~-------D~---------------~ii~aL~~As~aG--V~V~LivRGiCcL~pgip-g~sd~i~v-------- 573 (672)
T TIGR03705 527 KMNSLV-------DP---------------DLIDALYEASQAG--VKIDLIVRGICCLRPGVP-GLSENIRV-------- 573 (672)
T ss_pred EcCCCC-------CH---------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCC-CCCCCEEE--------
Confidence 999964 22 4567788888899 7777777 3322 11222111
Q ss_pred hhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEE
Q 004579 527 RTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYI 606 (744)
Q Consensus 527 rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~ 606 (744)
+ +++..+++ |+++ +.|.+ . ||.++
T Consensus 574 ~-------siv~r~Le-h~rI-------------------y~f~~-------------------------~----~d~~~ 597 (672)
T TIGR03705 574 R-------SIVGRFLE-HSRI-------------------YYFGN-------------------------G----GEEKV 597 (672)
T ss_pred E-------EEhhHhhC-cCEE-------------------EEEeC-------------------------C----CCcEE
Confidence 1 13444444 4443 12222 0 68899
Q ss_pred EEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 607 IIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 607 iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
.||||||+.|||.. ..|+++.++|+..
T Consensus 598 ~igSAn~m~Rnl~~--r~E~~~~i~d~~~ 624 (672)
T TIGR03705 598 YISSADWMTRNLDR--RVEVLFPIEDPTL 624 (672)
T ss_pred EEECCCCCCCcccc--eEEEEEEEcCHHH
Confidence 99999999999974 4999999999863
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-17 Score=154.73 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=80.0
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEE-EeCCCC----CCeeEEEEEeecccccCCCccceEEecccCCCCC-----
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTV-KDDNPI----GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP----- 70 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~v-kd~d~~----~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~----- 70 (744)
|++| +.||.|||+|+|+|+|.+++|+|+| +++|.. ++++||+++||+++|..|+.+++||||.+.++++
T Consensus 45 v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~ 123 (146)
T cd04013 45 SKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGK 123 (146)
T ss_pred EEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccc
Confidence 4567 8999999999999999999999999 676666 5799999999999999999999999999999998
Q ss_pred --CCCCceEEEEEEeeccccc
Q 004579 71 --ISSGSKIHVKLQYFDVTKD 89 (744)
Q Consensus 71 --~k~~~~IrV~lqf~p~~~~ 89 (744)
++.+++|||.+||+++...
T Consensus 124 ~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 124 EGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred cccCCCCEEEEEEEEEEeeeC
Confidence 7888999999999987654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=153.82 Aligned_cols=83 Identities=54% Similarity=1.028 Sum_probs=79.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
|++| +.||+|||+|+|+|+|..+.|+|+|+|.|.+|+++||+++||++++..|..++.||+|.+.+||+++.+++|||.
T Consensus 76 v~~~-~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 76 VIEN-SENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred EeCC-CCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 4677 899999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEee
Q 004579 81 LQYF 84 (744)
Q Consensus 81 lqf~ 84 (744)
+||+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9985
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-15 Score=137.87 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=70.7
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecc-cccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVE-EVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~-~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+.|.+.||+|||+|+|+|+|....|.|+|+|+|.++ +++||++.||+. .+..|+.++.||+|.+.+|++ ..+.||
T Consensus 39 v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~ 116 (121)
T cd04016 39 TAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMIN 116 (121)
T ss_pred EccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEE
Confidence 3445479999999999999998889999999999998 689999999996 678999999999998766664 469999
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.|+|
T Consensus 117 l~l~y 121 (121)
T cd04016 117 LVFSY 121 (121)
T ss_pred EEEeC
Confidence 99875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=139.27 Aligned_cols=145 Identities=21% Similarity=0.321 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
..+++.++++|.+|+++|+|+.|.+++.. .. ....|.++|++|+++||+|+||+ |........
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~-----~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~~------ 82 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI-----TE-----YGPVILDALLAAARRGVKVRILV-DEWSNTDLK------ 82 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc-----cc-----cchHHHHHHHHHHHCCCEEEEEE-cccccCCch------
Confidence 46789999999999999999999876422 01 36799999999999999999999 443322110
Q ss_pred CCCcHHHHHHhcCC---CcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 224 ATHDEETEKFFQGT---DVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 224 ~~~~~~~~~~l~~~---gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
........|... ++++...+... . ...++|+|++|||++ ++++||.|+...+
T Consensus 83 --~~~~~~~~l~~~~~~~i~~~~~~~~~-----------~-~~~~~H~K~~iiD~~-----------~~~vGS~N~~~~~ 137 (176)
T cd00138 83 --ISSAYLDSLRALLDIGVRVFLIRTDK-----------T-YGGVLHTKLVIVDDE-----------TAYIGSANLDGRS 137 (176)
T ss_pred --HHHHHHHHHHHhhcCceEEEEEcCCc-----------c-cccceeeeEEEEcCC-----------EEEEECCcCChhh
Confidence 012345556554 78876554211 0 247999999999999 9999999999865
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh--HHHHHHHHHHHHHHHh
Q 004579 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP--IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 301 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~ 365 (744)
+ ..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 138 ~-----------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L-----------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h-----------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 4 1457999999999 7999999999999864
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=155.07 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=106.5
Q ss_pred CCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcc
Q 004579 394 DTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPE 473 (744)
Q Consensus 394 ~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~ 473 (744)
.+|.+|++.|++.+. .|+. .-.|.+++|.++|.+||++|+|+++||+++. .
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~----- 54 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSD-----E----- 54 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCc-----c-----
Confidence 457889999998653 2321 1357899999999999999999999999531 1
Q ss_pred hhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCce
Q 004579 474 EINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYL 553 (744)
Q Consensus 474 ~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl 553 (744)
. ....+..+..+|.+|++|| |+|+|+++.. +. .. + ..+.|+++|+++.
T Consensus 55 -~--~~~~G~~i~~aL~~aA~rG--V~VRIL~d~~--~~---~~----------~-------~~~~L~~aGv~v~----- 102 (424)
T PHA02820 55 -V--GTNFGTMILNEIIQLPKRG--VRVRIAVNKS--NK---PL----------K-------DVELLQMAGVEVR----- 102 (424)
T ss_pred -c--cchhHHHHHHHHHHHHHCC--CEEEEEECCC--CC---ch----------h-------hHHHHHhCCCEEE-----
Confidence 0 0112567888999999999 9999999852 11 10 1 2467889998751
Q ss_pred EEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeec
Q 004579 554 TFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQ 632 (744)
Q Consensus 554 ~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d 632 (744)
.|... .+. ....|+|+||||++++.|||+||+.||+..+ .|+++.+.+
T Consensus 103 -~~~~~--------~~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 103 -YIDIT--------NIL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred -EEecC--------CCC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 22110 011 1379999999999999999999999999755 888888765
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-14 Score=131.46 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCC-------CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPI-------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~-------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|+|+|+++.+.|+|+|+|+|.+ ++++||++.||++++..|..++.||+|.+.+++++|.
T Consensus 41 ~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~ 119 (126)
T cd08379 41 TVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKK 119 (126)
T ss_pred cccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccC
Confidence 5678 8999999999999999999999999999987 7899999999999999999999999999888888888
Q ss_pred CceEEE
Q 004579 74 GSKIHV 79 (744)
Q Consensus 74 ~~~IrV 79 (744)
.++|+.
T Consensus 120 ~g~l~~ 125 (126)
T cd08379 120 MGELEC 125 (126)
T ss_pred CcEEEe
Confidence 898875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=148.33 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhh-hcCCeEEEEEeCCCccccccccccccC
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA-~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
+.++++++|.+||++|+|+++.|.|.. +.+.. ...+..|.++|++|| +|||+||||+ +..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDDK--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch-------
Confidence 458999999999999999999876522 22210 113579999999985 9999999998 875432110
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
.....+.|+.+|+++.+.-+ + ..+.+|+|++|||++ +|||||.|+...++..
T Consensus 284 --~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~~-----------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 --SMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDDE-----------FAHITSANFDGTHYLH- 335 (369)
T ss_pred --hhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcCC-----------EEEEeccccCchhhcc-
Confidence 12456678888855210000 0 012289999999999 9999999997754421
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHh
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~ 365 (744)
..|.++ ...+|++|.+++..|.++|+..
T Consensus 336 --------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 --------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred --------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2468999999999999999854
|
|
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=124.59 Aligned_cols=335 Identities=17% Similarity=0.173 Sum_probs=189.8
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCc---ceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYT---EISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGL 222 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~---~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~ 222 (744)
..++.++.|+.|+++++|..|-++- ++++. +. ....|..+..+|..++.+||.||+.. +...... .+
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~--ds--St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~~---- 142 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVV--DS--STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-PN---- 142 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccC--CC--cchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-Cc----
Confidence 4578899999999999998765432 11111 11 11257899999999999999999986 4332111 11
Q ss_pred cCCCcHHHHHHhcCCC-cEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCC
Q 004579 223 MATHDEETEKFFQGTD-VHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 223 ~~~~~~~~~~~l~~~g-V~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~ 301 (744)
.-...|...| ++++-.+-+. .....-.|-|..|||++ --|+||.|+...-.
T Consensus 143 ------~d~~~Le~~Gaa~vr~id~~~-----------l~g~GvlHtKf~vvD~k-----------hfylGSaNfDWrSl 194 (456)
T KOG3603|consen 143 ------ADLQVLESLGLAQVRSIDMNR-----------LTGGGVLHTKFWVVDIK-----------HFYLGSANFDWRSL 194 (456)
T ss_pred ------ccHHHHHhCCCceEEeecccc-----------cccCceEEEEEEEEecc-----------eEEEeccccchhhc
Confidence 1234566666 6665432111 11145689999999999 89999999985311
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee-Ch-HHHHHHHHHHHHHHHhcCCcccccccccCC
Q 004579 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE-GP-IAWDVLFNFEQRWRKQGGKDVLVHLRELGD 379 (744)
Q Consensus 302 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~-Gp-aa~dl~~~F~~rW~~~~~~~~l~~~~~~~~ 379 (744)
| .-..+++.++ -| .+.||...|++.|..........+.... .
T Consensus 195 -T----------------------------------qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~-~ 238 (456)
T KOG3603|consen 195 -T----------------------------------QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPN-C 238 (456)
T ss_pred -c----------------------------------ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCcc-c
Confidence 0 1124445554 34 7999999999999875443211000000 0
Q ss_pred CCCCC---CCCCCCCCCCCceeeeeecccCCcccCCCCChHHHhhcccccCCCCcchhHHHHHHHHHHHhcccEEEEe-e
Q 004579 380 IIIPP---SPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIE-N 455 (744)
Q Consensus 380 ~~~p~---~~~~~~~~~~~~~vQv~rS~~~~~~~~~p~~p~~~~~~~l~~~~~~~~e~sI~~ay~~aI~~A~~~IyIe-n 455 (744)
...+. .|....-+......++..| ..+| +.++. + -=.+|+++.|..|+.||||. -
T Consensus 239 ~st~~N~~~p~~~~~dg~~~~~y~saS-----P~~~-------------~~~gr--t-~DL~ail~~i~~A~~fv~isVM 297 (456)
T KOG3603|consen 239 YSTHYNKPLPMKIAVDGTPATPYISAS-----PPPL-------------NPSGR--T-WDLEAILNTIDEAQKFVYISVM 297 (456)
T ss_pred ccccccccCcceeecCCCCcceEEccC-----CCCC-------------CCCCC--c-hhHHHHHHHHHHHhhheeeeeh
Confidence 00000 0000000111122233222 1111 11111 1 12679999999999999997 5
Q ss_pred ccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHH
Q 004579 456 QYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKD 535 (744)
Q Consensus 456 qYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~ 535 (744)
+||-+..|.-|. .-- +|-.+|.+|+-|| |+|++++..|++..+ .+..+++ +
T Consensus 298 dY~Ps~~y~k~~------------~fw-~iDdaiR~aa~Rg--V~vR~lvs~~~~~~~---~m~~~L~----S------- 348 (456)
T KOG3603|consen 298 DYFPSTIYSKNH------------RFW-EIDDAIRRAAVRG--VKVRLLVSCWKHSEP---SMFRFLR----S------- 348 (456)
T ss_pred hccchheeecCc------------chh-hhhHHHHHHhhcc--eEEEEEEeccCCCCc---hHHHHHH----H-------
Confidence 777655443221 111 4555677777788 999999999875433 2222211 1
Q ss_pred HHHHHHH--cCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEeceEEEEcCccC
Q 004579 536 VVQALRA--KGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANI 613 (744)
Q Consensus 536 i~~~L~~--~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD~~~iIGSANi 613 (744)
.+.|.. +...+ =++||-. |...- ..-+| ...-|+|.||-++ .++||++|+
T Consensus 349 -Lq~l~~~~~~~~i----qvk~f~V------------P~~~~-~~ip~---------~Rv~HnKymVTe~-aayIGTSNw 400 (456)
T KOG3603|consen 349 -LQDLSDPLENGSI----QVKFFIV------------PQTNI-EKIPF---------ARVNHNKYMVTES-AAYIGTSNW 400 (456)
T ss_pred -HHHhcCccccCce----EEEEEEe------------CCCcc-ccCch---------hhhccceeEEeec-ceeeeccCC
Confidence 122221 01111 1234321 11000 00011 1268999999887 899999999
Q ss_pred CcccccCCCCcceEEEeecCC
Q 004579 614 NQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 614 n~RS~~g~rDsEi~l~i~d~~ 634 (744)
..=-|..+ .-++|+|.++.
T Consensus 401 s~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 401 SGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred Cccceecc--CceEEEEecCC
Confidence 98888776 78899997764
|
|
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-13 Score=151.38 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
..+++.++++|.+||++|+|++..|.| +..+.++|+.||+|||+|+||+ +..+......
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~p---------------d~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~~----- 401 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIP---------------DQETLTLLRLSAISGIDVRILY-PGKSDSIISD----- 401 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCC---------------CHHHHHHHHHHHHcCCEEEEEc-CCCCChHHHH-----
Confidence 468899999999999999999844322 3589999999999999999998 7654332111
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
.......+.|.++||++..+.+ ...|+|++|||++ +|+|||.|+....+
T Consensus 402 -~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~-----------~a~vGS~Nld~RS~-- 450 (509)
T PRK12452 402 -QASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK-----------IATIGTANMDVRSF-- 450 (509)
T ss_pred -HHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC-----------EEEEeCcccCHhHh--
Confidence 0112445677889999876542 2489999999999 99999999976433
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhc
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQG 366 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 366 (744)
+..|.+.++..+++.|.++...|.++|..+.
T Consensus 451 --------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 451 --------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred --------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 1346677888899999999999999998653
|
|
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=124.64 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
++++.++++|++|+++|+|+.|.+. ...+.++|.+|++|||+|+||+ |+.++...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~-------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN-------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc--------
Confidence 4678999999999999999987652 3589999999999999999998 87654311
Q ss_pred CCcHHHHHHhc-CCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 225 THDEETEKFFQ-GTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 225 ~~~~~~~~~l~-~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
+.....++. ..++++......... .......+|+|++|||++ ++++||.|++...+..
T Consensus 88 --~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~-----------~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 88 --DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK-----------IVVLGSANWSKNAFEN 146 (177)
T ss_pred --chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC-----------EEEEeCCCCChhHhcc
Confidence 112222332 246666544211100 011234689999999999 9999999999754421
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
=+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 -----------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 13567788887 6799999999999764
|
|
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=127.85 Aligned_cols=131 Identities=30% Similarity=0.398 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 433 e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
..++.+.++++|.+|++.|+|+++||.+.. ......+...|.+|.++| ++|+|++...+...
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----------------~~~~~~l~~~L~~a~~rG--v~V~il~~~~~~~~ 80 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI----------------TEYGPVILDALLAAARRG--VKVRILVDEWSNTD 80 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc----------------cccchHHHHHHHHHHHCC--CEEEEEEcccccCC
Confidence 468899999999999999999999998521 000235778888998898 89999999754321
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHc---CCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAK---GIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~---Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
. . ....+.+.|.++ |+++ +.+ .+.. .
T Consensus 81 ~----~-------------~~~~~~~~l~~~~~~~i~~--------~~~-----------~~~~-~-------------- 109 (176)
T cd00138 81 L----K-------------ISSAYLDSLRALLDIGVRV--------FLI-----------RTDK-T-------------- 109 (176)
T ss_pred c----h-------------HHHHHHHHHHHhhcCceEE--------EEE-----------cCCc-c--------------
Confidence 1 0 001134455554 4432 211 1100 0
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
....+|+|+||||++.+++||+|++.+|+.. +.|+++.+.+|.
T Consensus 110 ~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~--~~e~~~~~~~~~ 152 (176)
T cd00138 110 YGGVLHTKLVIVDDETAYIGSANLDGRSLTL--NSEVGVVIYDPA 152 (176)
T ss_pred cccceeeeEEEEcCCEEEEECCcCChhhhhh--hcceEEEEeChH
Confidence 1248999999999999999999999999974 599999998875
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=126.55 Aligned_cols=127 Identities=19% Similarity=0.258 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCC
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP 513 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~ 513 (744)
+.+...++++|++|+++|+|+. |+++. ..+..+|.+|.+|| |+|+|+++.......
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~---------------------~~i~~aL~~Aa~RG--V~VrIlld~~~~~~~ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH---------------------KDIAKALKSAAKRG--VKISIIYDYESNHNN 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch---------------------HHHHHHHHHHHHCC--CEEEEEEeCccccCc
Confidence 4678899999999999999986 66531 25678888998999 999999997542111
Q ss_pred CCchhHHHHHHHHhhhhhhHHHHHHHHHH-cCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 514 ESGSVQAILDWQRRTMDMMYKDVVQALRA-KGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 514 ~~~~~~~i~~~~~rt~~~~~~~i~~~L~~-~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
.. .+ ...|.+ .++++ +. +.+.... .. ....
T Consensus 88 ----~~-------~~--------~~~l~~~~~~~~--------~~-----------~~~~~~~-~~----------~~~~ 118 (177)
T PRK13912 88 ----DQ-------ST--------IGYLDKYPNIKV--------CL-----------LKGLKAK-NG----------KYYG 118 (177)
T ss_pred ----ch-------hH--------HHHHHhCCCceE--------EE-----------ecCcccc-Cc----------cccc
Confidence 10 00 011211 12221 10 0000000 00 0013
Q ss_pred EeeeeEEEEeceEEEEcCccCCcccccCCCCcceEEEeecCCc
Q 004579 593 YVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635 (744)
Q Consensus 593 yvHSK~mIVDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~~ 635 (744)
++|+|+||||++++++||+||+.+|+..| .|+.+.+.+|..
T Consensus 119 ~~H~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~ 159 (177)
T PRK13912 119 IMHQKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET 159 (177)
T ss_pred ccceeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH
Confidence 79999999999999999999999999755 999999988753
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-12 Score=118.51 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=70.5
Q ss_pred CCCCCCCCCccceeEEEeccc------CCceEEEEEEeCCCCC-CeeEEEEEeeccccc--CCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH------MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL--GGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah------~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~--~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+ ..+.|.|+|+|.|.++ +++||++.||++++. .|..++.||+|.+..+++.
T Consensus 37 v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~ 115 (126)
T cd08682 37 VKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDD 115 (126)
T ss_pred eecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCc
Confidence 4667 8999999999999877 4688999999999887 899999999999998 6888999999987666666
Q ss_pred CCCceEEEEEE
Q 004579 72 SSGSKIHVKLQ 82 (744)
Q Consensus 72 k~~~~IrV~lq 82 (744)
+..+.|+|.+|
T Consensus 116 ~~~Gei~l~~~ 126 (126)
T cd08682 116 KERGEIEVDIQ 126 (126)
T ss_pred cccceEEEEeC
Confidence 67899998775
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=121.42 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=72.1
Q ss_pred CCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCC-CeeEEEEEeecccccC----CCccceEEecccCCC-----CC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG----GEEVDKWVEILDEDR-----NP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~----g~~v~~w~~l~~~~~-----k~ 70 (744)
+++.+.||+|||+|.|+++++. +.|.|+|+|.+..+ +++||++.||++++.. ++.+++||+|.+..| |+
T Consensus 39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~ 118 (150)
T cd04019 39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK 118 (150)
T ss_pred ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence 3343689999999999998864 69999999999775 8999999999999975 467899999998766 77
Q ss_pred CCCCceEEEEEEeec
Q 004579 71 ISSGSKIHVKLQYFD 85 (744)
Q Consensus 71 ~k~~~~IrV~lqf~p 85 (744)
.|..++|+|.++|..
T Consensus 119 ~k~~g~l~l~i~~~~ 133 (150)
T cd04019 119 RKFASRIHLRLCLDG 133 (150)
T ss_pred CcccccEEEEEEecC
Confidence 888999999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-12 Score=115.98 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=69.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCCCeeEEEEEeecccccC-----CCccceEEecccCCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLG-----GEEVDKWVEILDEDRNPISSG 74 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~-----g~~v~~w~~l~~~~~k~~k~~ 74 (744)
|++| +.||+|||+|.|++++ ....|.|+|+|.|..++++||++.||++++.. ++.+++||+|.+..+ .+..
T Consensus 34 v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~ 110 (121)
T cd08378 34 AIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVG 110 (121)
T ss_pred ccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--Cccc
Confidence 5677 8999999999999998 46889999999998899999999999999975 345789999987544 4567
Q ss_pred ceEEEEEEee
Q 004579 75 SKIHVKLQYF 84 (744)
Q Consensus 75 ~~IrV~lqf~ 84 (744)
++|++.++|-
T Consensus 111 G~i~l~~~~~ 120 (121)
T cd08378 111 GELMLAVWFG 120 (121)
T ss_pred eEEEEEEEec
Confidence 9999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=115.00 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
++.| +.||+|||+|.|++.+..+.|.|.|+|.|.++ +++||.+.||++++..|...+.|++|.+..+ .+..|.|++
T Consensus 39 ~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l 115 (121)
T cd04042 39 TIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISL 115 (121)
T ss_pred eccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEE
Confidence 4667 89999999999999988899999999999985 8999999999999999999999999987544 346799999
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.+++.|
T Consensus 116 ~~~~~~ 121 (121)
T cd04042 116 VVTLTP 121 (121)
T ss_pred EEEECC
Confidence 998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=114.88 Aligned_cols=86 Identities=26% Similarity=0.445 Sum_probs=76.6
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCce
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSK 76 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~ 76 (744)
|++| +.||+|||+|.|++.|. ...|.|+|+|.+.++ +++||++.++++++..+...+.|++|.+.++++. .+.
T Consensus 32 v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~ 108 (127)
T cd08373 32 VLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GAT 108 (127)
T ss_pred eeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEE
Confidence 4677 89999999999999885 589999999999886 7999999999999999999999999998777653 589
Q ss_pred EEEEEEeeccccc
Q 004579 77 IHVKLQYFDVTKD 89 (744)
Q Consensus 77 IrV~lqf~p~~~~ 89 (744)
|++.++|.|+...
T Consensus 109 l~l~~~~~~~~~~ 121 (127)
T cd08373 109 ISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEEEeCCCCc
Confidence 9999999998865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=114.63 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 6 QSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
+.||+|||+|+|++.-+ ...++|.|+|.|.++ +++||++.||++++..|..++.||+|.+..+++.+..++|++.++|
T Consensus 43 ~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~ 122 (126)
T cd08400 43 GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY 122 (126)
T ss_pred CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence 78999999999997544 367999999998776 8999999999999999999999999987655455677999999999
Q ss_pred ec
Q 004579 84 FD 85 (744)
Q Consensus 84 ~p 85 (744)
.+
T Consensus 123 ~~ 124 (126)
T cd08400 123 SH 124 (126)
T ss_pred Ec
Confidence 86
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=112.45 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=68.6
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeeccccc-CCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||+|.|+|++. .+.|.|.|+|.+.+++++||++.||+++++ .+...+.||+|.+ + ..+.|+
T Consensus 31 v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~---~---~~G~i~ 103 (111)
T cd04052 31 VKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSG---N---GQGRIR 103 (111)
T ss_pred eecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCC---C---CCCEEE
Confidence 3556 89999999999999986 578999999999889999999999999997 4567899999964 2 358999
Q ss_pred EEEEeecc
Q 004579 79 VKLQYFDV 86 (744)
Q Consensus 79 V~lqf~p~ 86 (744)
+.++|+|+
T Consensus 104 ~~~~~~p~ 111 (111)
T cd04052 104 ISALWKPV 111 (111)
T ss_pred EEEEEecC
Confidence 99999985
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-11 Score=111.38 Aligned_cols=112 Identities=27% Similarity=0.385 Sum_probs=73.8
Q ss_pred HHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHH
Q 004579 441 IHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQA 520 (744)
Q Consensus 441 ~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~ 520 (744)
+++|.+|+++|+|..+||... .+...+..+.++| ++|.|++........ ....
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~----------------------~i~~~l~~~~~~g--v~v~ii~~~~~~~~~-~~~~-- 54 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP----------------------DIIKALLDAAKRG--VKVRIIVDSNQDDSE-AINL-- 54 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC----------------------HHHHHHHHHHHTT---EEEEEEECGGGHHC-CCSH--
T ss_pred HHHHhccCCEEEEEEEecCcH----------------------HHHHHHHHHHHCC--CeEEEEECCCccccc-hhhh--
Confidence 679999999999999999421 2456677777888 889999886321000 0000
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEE
Q 004579 521 ILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMI 600 (744)
Q Consensus 521 i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mI 600 (744)
.....+.+.+...|+++ + .++|+|++|
T Consensus 55 ----------~~~~~~~~~~~~~~i~v---------------------~----------------------~~~H~K~~i 81 (126)
T PF13091_consen 55 ----------ASLKELRELLKNAGIEV---------------------R----------------------NRLHAKFYI 81 (126)
T ss_dssp ----------HHHHHHHHHHHHTTHCE---------------------E----------------------S-B--EEEE
T ss_pred ----------HHHHHHHhhhccceEEE---------------------e----------------------cCCCcceEE
Confidence 01122344557777654 1 179999999
Q ss_pred EeceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 601 VDDEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 601 VDD~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
+||+++++||+|++.+||. ++.|+++.+.++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 9999999999999999995 4599999998874
|
... |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-11 Score=111.18 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=75.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|.+.+....|.|+|+|.|..+ +++||++.||+.++..+...+.||+|....++..+..++|++
T Consensus 37 v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l 115 (126)
T cd08678 37 TQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITV 115 (126)
T ss_pred EEec-CCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEE
Confidence 4567 89999999999999877889999999999887 899999999999999888889999997544333456899999
Q ss_pred EEEeecccc
Q 004579 80 KLQYFDVTK 88 (744)
Q Consensus 80 ~lqf~p~~~ 88 (744)
.++|.+...
T Consensus 116 ~~~~~~~~~ 124 (126)
T cd08678 116 EFLFMEPAE 124 (126)
T ss_pred EEEEecccc
Confidence 999987763
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-11 Score=111.37 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=68.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|+++ +.||+|||+|.|+|++....|.|.|+|.|.++ +++||++.||++++..+..++.||+|... ++..+..+.|++
T Consensus 40 v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l 117 (121)
T cd08401 40 TVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHL 117 (121)
T ss_pred EEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEE
Confidence 3556 89999999999999987789999999999886 79999999999999999999999999742 222234688888
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 118 ~~~~ 121 (121)
T cd08401 118 ELRL 121 (121)
T ss_pred EEEC
Confidence 7754
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=106.53 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=84.6
Q ss_pred HHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccc-cccccccccCCCcH
Q 004579 150 IFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSV-SLLKKDGLMATHDE 228 (744)
Q Consensus 150 l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~-~~~~~~g~~~~~~~ 228 (744)
+.++|++|+++|+|+.+.+. ...+.++|..++++||+|+|++ +..... ..... ....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~----------------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~~-----~~~~ 58 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT----------------DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAINL-----ASLK 58 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-----------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCSH-----HHHH
T ss_pred CHHHHhccCCEEEEEEEecC----------------cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhhh-----HHHH
Confidence 56899999999999988761 3578999999999999999998 553211 11000 0011
Q ss_pred HHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCCccc
Q 004579 229 ETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSL 308 (744)
Q Consensus 229 ~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~H~l 308 (744)
...+.++..|+++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 59 ~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~-----------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 59 ELRELLKNAGIEVR---------------------NRLHAKFYIIDDK-----------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHTTHCEE---------------------S-B--EEEEETTT-----------EEEEES--CSCCCS-------
T ss_pred HHHhhhccceEEEe---------------------cCCCcceEEecCc-----------cEEEcCCCCCcchh-------
Confidence 23344466677653 3699999999998 99999999988654
Q ss_pred cccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChH-HHHHHHHHHHHH
Q 004579 309 FRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLFNFEQRW 362 (744)
Q Consensus 309 ~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpa-a~dl~~~F~~rW 362 (744)
...++..+.+++|. +.++.+.|.+.|
T Consensus 100 ----------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 ----------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ----------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ----------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 12358999999995 999999999989
|
... |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=107.46 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=65.3
Q ss_pred CCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 6 QSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
+.||+|||+|.|++.+. .+.|.|+|+|.+..++++||++.|+++++..+...+.||+|.+ +|+ ..+.|++.++|
T Consensus 44 ~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 44 GQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred CCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 78999999999999984 5789999999999889999999999999998888999999974 443 46899998876
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=107.08 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=69.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+++| +.||+|||+|.|.+.+..+.|.|+|+|.+..+ +++||.+.+|+.++..+...+.|...+..+||+. ++|+|
T Consensus 43 ~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~---G~i~~ 118 (124)
T cd04044 43 VKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV---GELNY 118 (124)
T ss_pred eecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc---eEEEE
Confidence 3567 89999999999999977899999999999875 7999999999999998877775554445677754 99999
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.++|.|
T Consensus 119 ~l~~~p 124 (124)
T cd04044 119 DLRFFP 124 (124)
T ss_pred EEEeCC
Confidence 999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=106.44 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=68.0
Q ss_pred CCCCCCCCCccceeEEEecccCC----ceEEEEEEeCCCC--CCeeEEEEEeeccccc-CCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA----SNIIFTVKDDNPI--GATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~----~~l~~~vkd~d~~--~~~~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|.|++.++. ..|.|+|+|.+.+ ++++||++.||++++. .|+....||+|... ++.-+.
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~ 115 (127)
T cd04022 38 TKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRV 115 (127)
T ss_pred eEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCc
Confidence 4677 899999999999998753 5799999999977 5899999999999998 68899999999753 222235
Q ss_pred CceEEEEEEee
Q 004579 74 GSKIHVKLQYF 84 (744)
Q Consensus 74 ~~~IrV~lqf~ 84 (744)
.++|++.++++
T Consensus 116 ~G~l~l~~~~~ 126 (127)
T cd04022 116 RGEIGLKVYIT 126 (127)
T ss_pred cEEEEEEEEEc
Confidence 68999988876
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=125.72 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
.+.+.+.++|.+||++|+|++--| + ....+.++|+.||+|||+|+||+ +......+...
T Consensus 318 ~~~~~~~~~I~~A~~~I~I~tpYf------i---------p~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~~~----- 376 (483)
T PRK01642 318 TIHQFLLTAIYSARERLWITTPYF------V---------PDEDLLAALKTAALRGVDVRIII-PSKNDSLLVFW----- 376 (483)
T ss_pred HHHHHHHHHHHHhccEEEEEcCCc------C---------CCHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHHHH-----
Confidence 467789999999999999987222 2 14689999999999999999998 66433221110
Q ss_pred CCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCC
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 ~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~ 304 (744)
......+.|.++||++..+.. ...|.|++|||++ +++||+.|+....+.
T Consensus 377 -~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~-----------~~~vGS~N~d~rS~~-- 425 (483)
T PRK01642 377 -ASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE-----------LALVGTVNLDMRSFW-- 425 (483)
T ss_pred -HHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC-----------EEEeeCCcCCHhHHh--
Confidence 012345567778999876531 2379999999999 999999999654331
Q ss_pred CccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
-=+++.+.+.+| .+.++.+.|.++|...
T Consensus 426 ---------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 426 ---------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred ---------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 013677888887 6899999999999764
|
|
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=102.95 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|.+.+.. +.|.|+|+|.|.+++++||++.+|+.++..|...+.||+|.+ .+ .+.+++
T Consensus 41 vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~ 113 (119)
T cd04036 41 TIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEV 113 (119)
T ss_pred eecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEE
Confidence 4677 899999999999998753 569999999998888999999999999999999999999963 22 355665
Q ss_pred EE
Q 004579 80 KL 81 (744)
Q Consensus 80 ~l 81 (744)
.+
T Consensus 114 ~~ 115 (119)
T cd04036 114 EF 115 (119)
T ss_pred EE
Confidence 54
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=101.23 Aligned_cols=79 Identities=20% Similarity=0.419 Sum_probs=66.5
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+++| +.||+|||+|.|++.+....|.|.|+|.+.++ +++||++.+|+.++..|. +.||+|.+..++ .+..++|.+
T Consensus 39 ~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l 114 (119)
T cd08377 39 TIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILL 114 (119)
T ss_pred eecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEE
Confidence 3567 89999999999999987889999999999865 799999999999998775 689999865433 235688988
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 115 ~~~~ 118 (119)
T cd08377 115 EMDV 118 (119)
T ss_pred EEEe
Confidence 8875
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-10 Score=104.39 Aligned_cols=60 Identities=18% Similarity=0.461 Sum_probs=54.5
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCcc--ceEEeccc
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEV--DKWVEILD 65 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v--~~w~~l~~ 65 (744)
+.||+|||.|.|++++..++|+|+|+|+|.+++|+||++.||+++|..++.. ..||+|..
T Consensus 40 ~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 40 GSQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred CCCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 3599999999999999888899999999999999999999999999966555 88999963
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=102.20 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=65.4
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC---CCCCCc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN---PISSGS 75 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k---~~k~~~ 75 (744)
|++| +.||+|||+|.|++.+. .+.|.|+|+|.|.++ +++||.+.+|++++..+...+.||+|.+...+ ..+..+
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G 116 (123)
T cd04025 38 VVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLG 116 (123)
T ss_pred eecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceE
Confidence 3567 89999999999999886 478999999999887 79999999999999988888999999864222 233456
Q ss_pred eEEEEE
Q 004579 76 KIHVKL 81 (744)
Q Consensus 76 ~IrV~l 81 (744)
.|++.+
T Consensus 117 ~l~~~~ 122 (123)
T cd04025 117 SLRLKV 122 (123)
T ss_pred EEEEEe
Confidence 676654
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=118.81 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhcccEEEEEE-eccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 145 RCWEDIFDAITNARHMIYITG-WSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
.+.+.+.++|.+|+++|+|++ |.+ .+..|.++|+.||+|||+|+||+ +..+...+...
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpYf~----------------p~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~~~~---- 264 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAYFF----------------PGYRLLRALRNAARRGVRVRLIL-QGEPDMPIVRV---- 264 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecCcC----------------CCHHHHHHHHHHHHCCCEEEEEe-CCCCCcHHHHH----
Confidence 466789999999999999986 432 14689999999999999999999 76654433211
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
........|.++||++..+.. ...|.|++|||++ +++||+.|+....+ .
T Consensus 265 --a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~-----------~~~vGS~Nld~rS~-~ 313 (411)
T PRK11263 265 --GARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH-----------WATVGSSNLDPLSL-S 313 (411)
T ss_pred --HHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC-----------EEEEeCCcCCHHHh-h
Confidence 112456678889999865431 2589999999999 99999999976322 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHh
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 365 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 365 (744)
-=.++.+.|.+| .+.++...|++.+...
T Consensus 314 ----------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~~~ 342 (411)
T PRK11263 314 ----------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIAAD 342 (411)
T ss_pred ----------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHHhh
Confidence 002567888888 5788999999998633
|
|
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-10 Score=103.43 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|.+... ...|.|.|+|.|.++ +++||++.||+.++..++..+.|++|.
T Consensus 44 v~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 44 SKNN-NWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 4566 89999999999999753 256999999999887 789999999999999988999999995
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=100.36 Aligned_cols=76 Identities=21% Similarity=0.510 Sum_probs=64.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|++| +.||+|||+|.|++.. ....|.|.|+|.|..++++||++.|+++++..+...+.||+|.+. ..++|++
T Consensus 45 ~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~ 117 (121)
T cd08391 45 VIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL 117 (121)
T ss_pred ccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence 4567 9999999999999975 468999999999988889999999999999988889999999742 2366777
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 118 ~~~~ 121 (121)
T cd08391 118 KLEW 121 (121)
T ss_pred EEeC
Confidence 7653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-10 Score=101.52 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=57.3
Q ss_pred CCCCCCCCCcc-ceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccC---CCccceEEeccc
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~---g~~v~~w~~l~~ 65 (744)
|++| +.||+| ||+|.|++.+. .+.|.|+|+|.|.++ +++||++.+++.++.. +..+++||+|++
T Consensus 38 v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 38 VVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4677 899999 99999999985 368999999999987 6899999999999986 678999999986
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-10 Score=103.40 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=54.7
Q ss_pred CCCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC--CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG--ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~--~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|+++ +.||+|||+|.|++++. ...|.|+|+|.|..+ +++||++.||+.++..|+.+++||.|
T Consensus 54 v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 54 TVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cccC-CCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 3566 89999999999999884 357999999998764 68999999999999999999999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=104.05 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=70.6
Q ss_pred CCCCCCCCCccceeEEEecccC---------CceEEEEEEeCCCC--CCeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---------ASNIIFTVKDDNPI--GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---------~~~l~~~vkd~d~~--~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
|+++ +.||+|||+|.|.+... ...|.|.|+|++.+ .+++||++.|+++.+..+..++.|++|.+ ..|
T Consensus 47 v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k 124 (155)
T cd08690 47 TIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRK 124 (155)
T ss_pred cccC-CCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCC
Confidence 5677 99999999999999654 34699999999986 48999999999999998888999999974 344
Q ss_pred CCCCCceEEEEEEeecccc
Q 004579 70 PISSGSKIHVKLQYFDVTK 88 (744)
Q Consensus 70 ~~k~~~~IrV~lqf~p~~~ 88 (744)
+ .|+.|+|.++-|.+-.
T Consensus 125 ~--~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 125 A--TGGKLEVKVRLREPLT 141 (155)
T ss_pred C--cCCEEEEEEEecCCCc
Confidence 3 5899999998776653
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=102.38 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=66.5
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCC------ccceEEecccCCCCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE------EVDKWVEILDEDRNPISSG 74 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~------~v~~w~~l~~~~~k~~k~~ 74 (744)
++| +.||+|||+|.|++......|.|.|+|.|.++ +++||++.||+.++..+. ..++||+|....++ -+..
T Consensus 46 ~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 123 (133)
T cd04033 46 IKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVK 123 (133)
T ss_pred EcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-Ccce
Confidence 566 89999999999999876788999999999887 799999999999998654 45799999753222 2457
Q ss_pred ceEEEEEEe
Q 004579 75 SKIHVKLQY 83 (744)
Q Consensus 75 ~~IrV~lqf 83 (744)
+.|++.+.|
T Consensus 124 G~l~~~~~~ 132 (133)
T cd04033 124 GHLRLYMAY 132 (133)
T ss_pred eEEEEEEee
Confidence 999998876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=101.69 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=63.1
Q ss_pred CCCCCCCCccceeEEEecccC-----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc-----ceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV-----DKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v-----~~w~~l~~~~~k~ 70 (744)
+++.+.||+|||+|+|.+.+. ...|.|.|+|.+.++ +++||.+.||+.++..+... ..||+|.+.+||+
T Consensus 40 ~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 40 DRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred ccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 333389999999999999987 689999999999855 79999999999999976654 6899999888885
Q ss_pred CCCCceEEE
Q 004579 71 ISSGSKIHV 79 (744)
Q Consensus 71 ~k~~~~IrV 79 (744)
. +.|++
T Consensus 120 ~---G~~~~ 125 (125)
T cd04051 120 Q---GVLNF 125 (125)
T ss_pred C---eEEeC
Confidence 4 76653
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=99.50 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=55.0
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCC--CccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGG--EEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g--~~v~~w~~l~~ 65 (744)
|+++ +.||+|||+|.|+|.++ .+.|.|+|+|.+. +++||++.||+.++..+ ..++.||+|.+
T Consensus 38 v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 38 VKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred cccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 4566 89999999999999995 6889999999987 89999999999999854 57999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=99.70 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=64.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||.|.|++.+....|.|.|+|.|.++ +++||++.++++++.++ ..++.|++|.+.++. .+..+.|+
T Consensus 39 v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~ 116 (121)
T cd04054 39 TVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIH 116 (121)
T ss_pred eEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEE
Confidence 3567 89999999999999988789999999999887 79999999999999854 468999999653221 12457777
Q ss_pred EEE
Q 004579 79 VKL 81 (744)
Q Consensus 79 V~l 81 (744)
+.+
T Consensus 117 l~~ 119 (121)
T cd04054 117 LEL 119 (121)
T ss_pred EEE
Confidence 764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=97.61 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|+++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.++++++..++..+.||+|.+. .++++
T Consensus 38 v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~ 109 (116)
T cd08376 38 VCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLL 109 (116)
T ss_pred cccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEE
Confidence 4567 99999999999999886 689999999999886 89999999999999999999999999643 26676
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.+.+
T Consensus 110 ~~~~~ 114 (116)
T cd08376 110 LLLTL 114 (116)
T ss_pred EEEEe
Confidence 66554
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=99.70 Aligned_cols=81 Identities=16% Similarity=0.325 Sum_probs=65.7
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeeccccc---CCCccceEEecccCC-CCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL---GGEEVDKWVEILDED-RNPISSG 74 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~---~g~~v~~w~~l~~~~-~k~~k~~ 74 (744)
|++| +.||+|||+|.|++.+ ....|.|+|+|.|..+ +++||++.|++++++ .+...+.||+|.+.. ++..+..
T Consensus 41 ~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~ 119 (128)
T cd04024 41 TIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVS 119 (128)
T ss_pred eecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccccc
Confidence 4567 8999999999999998 5689999999999885 899999999999998 345679999997652 2333457
Q ss_pred ceEEEEEE
Q 004579 75 SKIHVKLQ 82 (744)
Q Consensus 75 ~~IrV~lq 82 (744)
+.|++.++
T Consensus 120 G~i~l~~~ 127 (128)
T cd04024 120 GEIHLQFS 127 (128)
T ss_pred ceEEEEEE
Confidence 77877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-09 Score=98.71 Aligned_cols=73 Identities=26% Similarity=0.497 Sum_probs=62.1
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccC--CCccceEEecccCCCCCCCCCceEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~--g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
+++ +.||+|||+|.|++. ....|.|.|+|++.++ +++||++.|++++++. +...+.||+|. + .+.|+
T Consensus 54 ~~~-t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------~G~l~ 123 (132)
T cd04014 54 KPK-TNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-P-------QGKLH 123 (132)
T ss_pred cCC-CCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-C-------CcEEE
Confidence 455 899999999999997 5578999999999876 6999999999999997 78899999995 2 36677
Q ss_pred EEEEee
Q 004579 79 VKLQYF 84 (744)
Q Consensus 79 V~lqf~ 84 (744)
+.+++.
T Consensus 124 l~~~~~ 129 (132)
T cd04014 124 VKIELK 129 (132)
T ss_pred EEEEEe
Confidence 777665
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.4e-09 Score=121.86 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=90.0
Q ss_pred HHHHHHHHhccc-----EEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 438 DAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 438 ~ay~~aI~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
+..++.|++|.+ .|.|+--.+.+. ..+..++.+|+++| ++|.|+++..+-++
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~---------------------s~iv~aL~~Aa~~G--k~V~vlve~karfd 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD---------------------SPIVDALIEAAENG--KQVTVLVELKARFD 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC---------------------HHHHHHHHHHHHcC--CEEEEEEccCcccc
Confidence 567889999999 899865444321 14677888999999 89999999754111
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
.++... .+++|+++|+++ +| .|.+ .
T Consensus 408 ----------e~~n~~-------~~~~L~~aGv~V-------~y-----------~~~~--------------------~ 432 (691)
T PRK05443 408 ----------EEANIR-------WARRLEEAGVHV-------VY-----------GVVG--------------------L 432 (691)
T ss_pred ----------HHHHHH-------HHHHHHHcCCEE-------EE-----------ccCC--------------------c
Confidence 122222 578999999976 12 2332 4
Q ss_pred EeeeeEEEEece-------EEEEcCccCCcccccCCCCcceEEEeecCCcc
Q 004579 593 YVHAKMMIVDDE-------YIIIGSANINQRSMEGARDTEIAMGGYQPYHL 636 (744)
Q Consensus 593 yvHSK~mIVDD~-------~~iIGSANin~RS~~g~rDsEi~l~i~d~~~~ 636 (744)
.+|||+|+||++ |+.|||+|+|.||...+ +|+++.+.++...
T Consensus 433 k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 433 KTHAKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred cceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 899999999999 99999999999999877 9999998887654
|
|
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-09 Score=98.29 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCCCCCCccceeEEEecccCC-----ceEEEEEEeCCCCC-CeeEEEEEeecccccCC---CccceEEeccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-----SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG---EEVDKWVEILD 65 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-----~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g---~~v~~w~~l~~ 65 (744)
+++ +.||+|||+|.|++..+. +.|.|+|+|.+.++ +++||++.||++++..+ .+.++||+|.+
T Consensus 39 ~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 39 KKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred Eec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 455 789999999999987653 57999999999887 79999999999999865 67999999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-09 Score=99.47 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=55.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|.+.+. ...|.|+|+|.|.++ +++||++.||+.++...+.++.||||
T Consensus 59 v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 59 IKRN-TTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred eeeC-CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 3556 89999999999999873 457999999999887 78999999999999988999999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-09 Score=98.53 Aligned_cols=62 Identities=16% Similarity=0.347 Sum_probs=55.1
Q ss_pred CCCCCCCCCccceeEEEec-cc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYC-AH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~-ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++ .+ ....|.|+|+|.|.++ +++||++.||+.++..++..+.||+|
T Consensus 55 v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 55 VVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ccCC-CCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 4677 99999999999986 43 2468999999999887 79999999999999999999999997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-09 Score=97.87 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=56.2
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
++++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.||++++..|+..+.|++|.
T Consensus 57 v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRK-TLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 3566 89999999999999873 468999999999887 799999999999998899999999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-09 Score=98.32 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDED 67 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~ 67 (744)
+++ +.||+|||+|.|++.+..+.|.|.|.|.+.++ +++||++.+++.+++.+ ..++||.+++++
T Consensus 41 ~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 41 ISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred ECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 456 89999999999999998899999999999987 67999999999999977 679999999755
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-10 Score=74.79 Aligned_cols=27 Identities=63% Similarity=1.053 Sum_probs=18.8
Q ss_pred cccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 263 ~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~-----------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR-----------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT-----------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC-----------EEEECceecCCCC
Confidence 57999999999999 9999999999764
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-09 Score=96.71 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=56.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|++.+. ...|.|.|+|.|.++ +++||++.|+++++..++..+.||+|.
T Consensus 57 v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 57 IHKK-TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 3567 89999999999998875 468999999999887 799999999999999788999999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-09 Score=99.63 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCCCCCCCccceeEEEecc---------------c-CCceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEe
Q 004579 1 MLKKEQSNPRWYESFHIYCA---------------H-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVE 62 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a---------------h-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~ 62 (744)
|+++ +.||+|||+|.|++. + ....|.|.|+|.+.++ +++||++.||+.++..+ ...+.||+
T Consensus 41 v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~ 119 (148)
T cd04010 41 VKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYF 119 (148)
T ss_pred cEeC-CCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceee
Confidence 4567 899999999999995 2 1357999999999875 79999999999999977 78899999
Q ss_pred cccCCCC
Q 004579 63 ILDEDRN 69 (744)
Q Consensus 63 l~~~~~k 69 (744)
|.+...+
T Consensus 120 L~~~~~~ 126 (148)
T cd04010 120 LQPREEK 126 (148)
T ss_pred cCCcccc
Confidence 9765443
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=96.12 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=55.4
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.||+.++-.++....||+|.
T Consensus 59 v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 59 VKKK-TLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCcC-CCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 4677 89999999999999752 468999999999887 789999999999998778889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-08 Score=93.17 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCC-CCCCCCCceEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDED-RNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~-~k~~k~~~~IrV 79 (744)
|+++ +.||+|||+|.|++......|.|.|+|.+.+++++||++.+++.++. +....||+|.... ....+..|.|.+
T Consensus 41 v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~ 117 (126)
T cd04046 41 VQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISV 117 (126)
T ss_pred ccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEE
Confidence 4677 89999999999999988889999999999999999999999998864 4456889995321 123345688888
Q ss_pred EEEeec
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.++..+
T Consensus 118 ~~~~~~ 123 (126)
T cd04046 118 KVTSSD 123 (126)
T ss_pred EEEEcc
Confidence 876654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=93.46 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=54.4
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccC---CCccceEEecc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEIL 64 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~---g~~v~~w~~l~ 64 (744)
++| +.||+|||+|.|++.+. ...|.|+|+|.|..+ +++||++.|+++++.. |...+.||+|.
T Consensus 43 ~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 43 IYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred ecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 566 89999999999999985 578999999999886 7999999999998753 56789999995
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.7e-09 Score=100.10 Aligned_cols=61 Identities=16% Similarity=0.390 Sum_probs=49.4
Q ss_pred CCCCCCCCCccceeEEEecc--cCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCA--HMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a--h~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++. +....|+|+|+|.|.++ +++||.+.||++++.... .++|+|+
T Consensus 52 v~~~-t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~-~~~~lp~ 115 (151)
T cd04018 52 VKKN-SYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG-DEGFLPT 115 (151)
T ss_pred eEcC-CCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC-ccccCCc
Confidence 4678 899999999999965 45679999999999885 899999999999998533 4433333
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=95.51 Aligned_cols=76 Identities=20% Similarity=0.406 Sum_probs=61.9
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccC-----CCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG-----GEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~-----g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +.||+|||+|.|.+.+. .+.|.|.|+|.|.++ +++||.+.||++++.. ...+.+|+++- ++ .
T Consensus 53 vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~ 125 (136)
T cd08375 53 VVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---P 125 (136)
T ss_pred ccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---c
Confidence 5778 99999999999999875 467999999999887 7999999999999985 34566788873 33 2
Q ss_pred CceEEEEEEe
Q 004579 74 GSKIHVKLQY 83 (744)
Q Consensus 74 ~~~IrV~lqf 83 (744)
.+.|++.+.+
T Consensus 126 ~g~i~l~~~~ 135 (136)
T cd08375 126 TGEVVVKLDL 135 (136)
T ss_pred ceeEEEEEEe
Confidence 3788888765
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=94.52 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=54.8
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++... ...|.|.|+|.|.++ +++||++.||+.++..+..++.||+|
T Consensus 58 v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 58 VKKN-TTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccCC-CCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3566 89999999999998763 468999999999877 79999999999999888889999997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-08 Score=95.59 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeeccccc-C--CCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-G--GEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~--g~~v~~w~~l 63 (744)
|+++ +.||+|||+|.|++.+. ...|.|+|+|.+.++ +++||++.||+.++. + ++.+..||+|
T Consensus 59 v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 59 VKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred cccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4566 89999999999998773 468999999999876 799999999999995 3 5789999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=94.46 Aligned_cols=62 Identities=16% Similarity=0.356 Sum_probs=54.7
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCC---CCeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPI---GATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~---~~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|.+... ...|.|+|+|.+.+ .+++||++.|++.++..++..+.||+|
T Consensus 59 v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 59 VKKD-NLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred cccC-CCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 4677 89999999999998653 47899999999975 479999999999999988999999998
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-08 Score=96.51 Aligned_cols=65 Identities=12% Similarity=0.238 Sum_probs=56.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEE-eCCCCC-CeeEEEEEeecccccCCCccceEEecccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVK-DDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vk-d~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|+++ +.||+|||+|.|++.-....|.|+|+ |.+.++ +++||++.||++++-.++.+..||+|.++
T Consensus 73 v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 73 IARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred ecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 3566 99999999999999866678999999 566665 68999999999999878889999999854
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=98.46 Aligned_cols=57 Identities=18% Similarity=0.511 Sum_probs=51.3
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
+++ +.||+|||+|.|++.+. .+.|.|+|+|.| +++||++.||++++. +..++.||+|
T Consensus 96 ~~~-tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 96 KPQ-TLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ecC-CCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 456 89999999999999985 578999999998 899999999999998 4568999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-09 Score=99.85 Aligned_cols=58 Identities=22% Similarity=0.468 Sum_probs=53.3
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccce
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDK 59 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~ 59 (744)
|++| +.||+|||.|.|++.|+...|.++|.|+|.++ +|+||.|.||++.++++.....
T Consensus 44 ~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 44 VVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred eecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 4677 99999999999999999999999999999998 7999999999999998776654
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=90.43 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCCccceeEEEeccc---CCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 7 SNPRWYESFHIYCAH---MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 7 ~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
.||+|||+|.|.+.+ ....|.|.|+|++..+ ..+|.+++++..+..|...+.||+|.+.+++. +..++|++.++|
T Consensus 40 ~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~-~~~~~g~v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 40 LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD-RDIVIGKVALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred CCCcccceEEEecCCccccEEEEEEEEEecccCC-CeeEEEEEEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 799999999999998 4567889999988664 33566677777777788999999997655432 356899999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-08 Score=92.18 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=53.6
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC---CeeEEEEEeecccccCC-CccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG---ATLIGRAYVPVEEVLGG-EEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~---~~~iG~~~ip~~~~~~g-~~v~~w~~l~~ 65 (744)
|++| +.||+|||+|.|++.+ .+.|.|.|+|.+.++ +++||.+.||+.++... .....||++..
T Consensus 39 v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 39 VAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred EEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeec
Confidence 4567 8999999999999975 789999999999886 47999999999999844 34477999954
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-08 Score=92.94 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=56.8
Q ss_pred CCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEeccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 65 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~ 65 (744)
+++.+.||+|||+|.|.+.++ ...|.|.|+|.+.++ +++||++.||+.+++.+...+.|++|..
T Consensus 40 ~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 40 AKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 333378999999999999987 578999999999876 7999999999999998888999999964
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-08 Score=91.65 Aligned_cols=61 Identities=21% Similarity=0.440 Sum_probs=51.0
Q ss_pred CCCCCCCCCccceeEEEeccc----CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAH----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++.+ ....|.|+|+|.|.++ +++||++.||+++... +..+.||+|
T Consensus 59 v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 59 TVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred ccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 4677 9999999999999765 3578999999999876 7999999999999432 334689998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-08 Score=89.47 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=59.4
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
+++| +.||+|||+|.|++.+. .+.+.|.|+|.+..+ +++||++.+++.++..+...+.|++|....|.
T Consensus 38 v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 38 TIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred eecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 3566 89999999999999874 678999999999876 79999999999999999999999999754443
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=92.32 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=54.1
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.||+.++..++..+.|++|.
T Consensus 57 v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecC-CCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 4667 89999999999984221 246999999999886 799999999999999999999999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-08 Score=96.08 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=58.3
Q ss_pred CCCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|++.. ....|.|+|+|.|.++ +++||++.|++.. .|+..+.|+++++..|+++
T Consensus 58 v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 58 VKKC-TLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred cccC-CCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 4667 9999999999999875 3456899999999887 7999999999998 5888999999987767754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=101.72 Aligned_cols=159 Identities=18% Similarity=0.332 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccc----ccccccc
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSV----SLLKKDG 221 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~----~~~~~~g 221 (744)
-.++|++.|..|++.|||.-....|...-..+ . .-+.|+++|++||-|||+||+|+=....+. .++++
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~-----~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~S-- 348 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H-----RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRFLRS-- 348 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c-----chhhhhHHHHHHhhcceEEEEEEeccCCCCchHHHHHHH--
Confidence 46899999999999999998887774433322 3 245999999999999999999992221111 11110
Q ss_pred ccCCCcHHHHHHhcCCCcEEEEc--CCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCC
Q 004579 222 LMATHDEETEKFFQGTDVHCILC--PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 299 (744)
Q Consensus 222 ~~~~~~~~~~~~l~~~gV~~~~~--~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~ 299 (744)
+ +.....+++..|+|+++ |+... ...+....+|.|++|-+. .||||.-|.+.+
T Consensus 349 L-----q~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~------------aayIGTSNws~d 403 (456)
T KOG3603|consen 349 L-----QDLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES------------AAYIGTSNWSGD 403 (456)
T ss_pred H-----HHhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec------------ceeeeccCCCcc
Confidence 0 11112234567777755 43321 134567889999999988 699999999998
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHHHHhcC
Q 004579 300 RYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGG 367 (744)
Q Consensus 300 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~ 367 (744)
||-.. .|..+--.. .| -.|+++.+|...|+++|+..-.
T Consensus 404 Yf~~T---------------------aG~~ivv~q--~~-------~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 404 YFTST---------------------AGTAIVVRQ--TP-------HKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ceecc---------------------CceEEEEec--CC-------CCCcHHHHHHHHHhhccccccc
Confidence 87321 110000000 01 2578999999999999987543
|
|
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-08 Score=90.89 Aligned_cols=75 Identities=21% Similarity=0.473 Sum_probs=59.0
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCC------------CCeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPI------------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~------------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
++| +.||+|||+|.|+|.++...|.|.|.|.|.. ++++||++.||+.++. ...+.||+|....++
T Consensus 40 v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~ 116 (127)
T cd04027 40 IPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDK 116 (127)
T ss_pred ecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCC
Confidence 567 8999999999999998888999999999852 4799999999999874 335799999854433
Q ss_pred CCCCCceEEEE
Q 004579 70 PISSGSKIHVK 80 (744)
Q Consensus 70 ~~k~~~~IrV~ 80 (744)
.+..|.|++.
T Consensus 117 -~~~~G~i~~~ 126 (127)
T cd04027 117 -SAVSGAIRLH 126 (127)
T ss_pred -CcEeEEEEEE
Confidence 2245666553
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-08 Score=90.56 Aligned_cols=77 Identities=23% Similarity=0.404 Sum_probs=59.1
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCC---Cc--cceEEecccCCCC-CCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG---EE--VDKWVEILDEDRN-PISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g---~~--v~~w~~l~~~~~k-~~k~ 73 (744)
|+++ +.||+|||+|.|++. ..+.|.|.|+|.+.++ +++||++.|++.+++.+ .. +..|+++.... + -.+.
T Consensus 40 v~~~-t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 116 (125)
T cd04021 40 VSKK-TSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVK 116 (125)
T ss_pred eeCC-CCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCccee
Confidence 3566 899999999999975 5679999999999886 79999999999999843 22 45699997543 2 1234
Q ss_pred CceEEEE
Q 004579 74 GSKIHVK 80 (744)
Q Consensus 74 ~~~IrV~ 80 (744)
.|.|.+.
T Consensus 117 ~G~~~~~ 123 (125)
T cd04021 117 VGELTVI 123 (125)
T ss_pred eeeEEEE
Confidence 5666654
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-08 Score=92.18 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=55.9
Q ss_pred CCCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|++| +.||+|||+|.|++... ...|.|.|+|.+.++ +++||.+.+|++++... ..+.||+|.+.
T Consensus 56 v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 56 TIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred eecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 4567 89999999999998764 468999999999875 79999999999999855 78999999875
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=88.59 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=63.0
Q ss_pred CCCCCCCCccceeEEEecccCC-ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVK 80 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~-~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~ 80 (744)
+++.+.||+|||+|.|.+.++. +.|.|.|+|.+..++++||.+.+|++++..|. +|++|.+..|++. ..+.|.+.
T Consensus 49 ~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~ 124 (128)
T cd00275 49 VKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVH 124 (128)
T ss_pred ecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEE
Confidence 3442459999999999998754 67999999999888899999999999998775 7999998888743 45667666
Q ss_pred EEe
Q 004579 81 LQY 83 (744)
Q Consensus 81 lqf 83 (744)
+++
T Consensus 125 ~~~ 127 (128)
T cd00275 125 IDI 127 (128)
T ss_pred EEE
Confidence 553
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-08 Score=90.36 Aligned_cols=62 Identities=13% Similarity=0.259 Sum_probs=52.9
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|.++ +.||+|||+|.|.+++. ...|.|+|.|.|.++ +++||++.+|+.++..+...+-|-+|
T Consensus 53 v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 53 LKKL-ALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eecC-CCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 3456 99999999999999883 467999999999998 79999999999998666667778654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-08 Score=91.41 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=53.4
Q ss_pred CCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-CCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l 63 (744)
.++ +.||+|||+|.|++++ ....|.|+|+|.|.++ +++||.+.|++.++- ++.....||+|
T Consensus 59 ~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 59 LED-QDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCC-CCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 445 8999999999999987 3578999999999887 799999999999994 66678999986
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-08 Score=90.23 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=52.3
Q ss_pred CCCccceeEEEe-ccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 7 SNPRWYESFHIY-CAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 7 ~~P~Wne~F~~~-~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
.||+|||+|.|+ +++ ....|.|+|+|.|.++ +++||++.||++++..++....||+|.
T Consensus 61 ~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 61 PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 899999999999 665 2467999999999887 799999999999999999999999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-08 Score=91.90 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCCCCCCCccceeEEEecccC----------------CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEec
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----------------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----------------~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
|++| +.||+|||+|.|++.+. ...|.|.|+|.+.++ +++||++.||++++..+...+.||+|
T Consensus 40 vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L 118 (137)
T cd08675 40 VKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118 (137)
T ss_pred eeeC-CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEec
Confidence 4667 89999999999999885 468999999999885 89999999999999987789999999
Q ss_pred cc
Q 004579 64 LD 65 (744)
Q Consensus 64 ~~ 65 (744)
..
T Consensus 119 ~~ 120 (137)
T cd08675 119 QP 120 (137)
T ss_pred CC
Confidence 64
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-08 Score=89.37 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=48.3
Q ss_pred CCCCCCCCCccceeEEEecccCC--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
|+++ +.||+|||+|.|++.+.. ..|.|.|+|.|.++ +++||++.|++++|+.+...
T Consensus 43 v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 43 WRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred eecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCCC
Confidence 4677 899999999999987643 47999999999887 79999999999999977643
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.9e-08 Score=89.65 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCCCCCccceeEEEecc-cCCceEEEEEEeCCC----CC-CeeEEEEEeecccccCCCccceEEecccCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCA-HMASNIIFTVKDDNP----IG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 70 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~a-h~~~~l~~~vkd~d~----~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~ 70 (744)
|++| +.||+|||+|.|.+. ...+.|.|.|+|.|. ++ +++||++.+|+.+++.++....|++|.. ||.
T Consensus 45 vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~--~~~ 117 (120)
T cd04048 45 VIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG--GKG 117 (120)
T ss_pred EeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC--CCc
Confidence 4678 999999999999854 356789999999996 54 7999999999999998888889999954 553
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=89.70 Aligned_cols=80 Identities=14% Similarity=0.363 Sum_probs=60.5
Q ss_pred CCCCCCCCCccceeEEEecccC----------CceEEEEEEeCCCCC-CeeEEEEEe-ecccccC---CCccceEEeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----------ASNIIFTVKDDNPIG-ATLIGRAYV-PVEEVLG---GEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----------~~~l~~~vkd~d~~~-~~~iG~~~i-p~~~~~~---g~~v~~w~~l~~ 65 (744)
|++| +.||+|||+|.|++.+. ...|.|.|+|.|..+ +++||++.| |...+.. +.....||+|.
T Consensus 39 v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~- 116 (135)
T cd04017 39 VIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY- 116 (135)
T ss_pred eEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-
Confidence 4667 99999999999986542 256999999999887 689999997 6655542 57899999996
Q ss_pred CCCCCCCCCceEEEEEEeec
Q 004579 66 EDRNPISSGSKIHVKLQYFD 85 (744)
Q Consensus 66 ~~~k~~k~~~~IrV~lqf~p 85 (744)
+.|+ ..++|.+.+...+
T Consensus 117 ~~~~---~~Geil~~~~~~~ 133 (135)
T cd04017 117 KGGQ---SAGELLAAFELIE 133 (135)
T ss_pred cCCC---chhheeEEeEEEE
Confidence 3443 3577777665544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-08 Score=94.17 Aligned_cols=68 Identities=31% Similarity=0.611 Sum_probs=59.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... ...|.|.|+|.+.++ +++||.+.|++++ .|+.++.|++|++..+++.
T Consensus 57 ~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 57 VKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred ceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 3566 89999999999999875 478999999999865 7999999999999 7889999999998767754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-08 Score=93.47 Aligned_cols=68 Identities=28% Similarity=0.476 Sum_probs=57.0
Q ss_pred CCCCCCCCCccceeEEEecccC-C--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-A--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... . ..|.|+|+|.|.+| +++||++.||+. ..|+..+.|++++...|++.
T Consensus 57 v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 57 VKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred cccC-CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 4566 89999999999998653 2 35999999999988 899999999987 45777899999998777754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-08 Score=92.78 Aligned_cols=68 Identities=29% Similarity=0.583 Sum_probs=57.1
Q ss_pred CCCCCCCCCccceeEEEeccc--C-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH--M-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah--~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|++.. . ...|.|+|+|.|.++ +++||++.||+.+. |+..+.|++++...++|.
T Consensus 58 v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 58 IKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred ceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 4567 8999999999998653 2 357999999999887 79999999999986 888899999987666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.3e-08 Score=66.66 Aligned_cols=26 Identities=58% Similarity=0.784 Sum_probs=24.7
Q ss_pred eEeeeeEEEEeceEEEEcCccCCccc
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRS 617 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS 617 (744)
...|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-08 Score=93.57 Aligned_cols=67 Identities=31% Similarity=0.537 Sum_probs=56.6
Q ss_pred CCCCCCCCccceeEEEecccCC---ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHMA---SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~---~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
++| +.||+|||+|.|++.... ..|.|.|+|.|.++ +++||.+.||+.. .|+.++.|++++...+++.
T Consensus 59 ~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 59 KKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred eeC-CCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 456 899999999999987642 47999999999887 6999999999975 5888999999997665654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-07 Score=87.61 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
+++| +.||+|||+|.|.+... ...|.|.|+|.+..+ +++||++.|+++++......+.|++|.
T Consensus 56 v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRK-TQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcC-CCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 3567 99999999999998764 357999999999887 799999999999999888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-08 Score=91.90 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=57.1
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+. ...|.|.|+|.|.++ +++||.+.|++.. .|+..+.||++++..+++.
T Consensus 56 v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 56 VKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred eEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 3556 89999999999998874 357999999999876 7999999999985 6788899999987655543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-08 Score=87.45 Aligned_cols=60 Identities=18% Similarity=0.440 Sum_probs=50.6
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|+++ +.||+|||+|.|.+... ...|.|+|+|.|.++ +++||++.||+.++. --.+|+++-
T Consensus 43 v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 43 IIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred eECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 4567 89999999999998763 468999999999887 799999999999998 235688873
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=120.74 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=68.1
Q ss_pred CCCCCCCCCccceeEEEecccCC--ceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEecccCCCCCCCCCce--
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA--SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSK-- 76 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~-- 76 (744)
||++ +.||+|||.|.|.+.++. +.|+|.|+|+|.+|++.||.+.|++.+|..+..+++||+|.+ +|++ .++
T Consensus 2017 vvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k---~G~~~ 2091 (2102)
T PLN03200 2017 VVSH-SSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNK---DGSSR 2091 (2102)
T ss_pred ccCC-CCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-cccc---CCCcc
Confidence 5778 999999999999999976 779999999999999999999999999999999999999974 3332 234
Q ss_pred -EEEEEEeec
Q 004579 77 -IHVKLQYFD 85 (744)
Q Consensus 77 -IrV~lqf~p 85 (744)
|.+.+++++
T Consensus 2092 ~~~~e~~w~~ 2101 (2102)
T PLN03200 2092 TLEIEFQWSN 2101 (2102)
T ss_pred eEEEEEEecC
Confidence 777776653
|
|
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-07 Score=99.97 Aligned_cols=123 Identities=17% Similarity=0.273 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCC--C
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPE--G 511 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~--g 511 (744)
.....+++++|++|+++||||+-||-. |+ ++.++..+|.+|+++.++|+|+|++-.+=. |
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~------D~------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg 95 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLED------DE------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRG 95 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecC------Cc------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccc
Confidence 367999999999999999999999963 22 256888899888776667999999985310 0
Q ss_pred CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcC--CCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcc
Q 004579 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKG--IMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARR 589 (744)
Q Consensus 512 ~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~G--v~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~ 589 (744)
...+.+ .. .-..++..|.+++ +++ .+|++ |. . .+.
T Consensus 96 ~iG~~~---------~~---~~~~~~~~l~~~~~gv~v------~~f~~------------p~-~------------~~e 132 (451)
T PRK09428 96 LIGAAA---------SN---TNADWYCEMAQEYPGVDI------PVYGV------------PV-N------------TRE 132 (451)
T ss_pred ccccCC---------CC---cCHHHHHHHHHhCCCceE------EEcCC------------cc-c------------cch
Confidence 000000 00 0122466777764 554 34421 10 0 001
Q ss_pred eeeEeeeeEEEEeceEEEEcCccCCcccc
Q 004579 590 FMIYVHAKMMIVDDEYIIIGSANINQRSM 618 (744)
Q Consensus 590 ~~iyvHSK~mIVDD~~~iIGSANin~RS~ 618 (744)
.....|-|++||||+.++.| ||||+--+
T Consensus 133 ~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl 160 (451)
T PRK09428 133 ALGVLHLKGFIIDDTVLYSG-ASLNNVYL 160 (451)
T ss_pred hhhhceeeEEEECCCEEEec-ccccHHHh
Confidence 12358999999999999999 89999555
|
|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-07 Score=86.95 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCCCCCCCCccceeEEEe-ccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc--CCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIY-CAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL--GGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~-~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~--~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|+ +.. ....|.|+|+|.|.++ +++||++.||+.++- ++..+.-|+++.
T Consensus 58 v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 58 VLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 4667 9999999999995 332 2346999999999776 799999999999995 346699999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=99.26 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcccEEEEEE-eccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcc--cccccccccc
Q 004579 147 WEDIFDAITNARHMIYITG-WSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTS--VSLLKKDGLM 223 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s--~~~~~~~g~~ 223 (744)
-..++.+|.+|+++|+|+. |.+ .+..+.++|+.++++||+|+|++ ++.+. ..... .
T Consensus 272 ~~~~~~~i~~A~~~i~i~~pYf~----------------~~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~~~-~--- 330 (438)
T COG1502 272 NRLLLKAINSARESILIATPYFV----------------PDRELLAALKAAARRGVDVRIII-PSLGANDSAIVH-A--- 330 (438)
T ss_pred HHHHHHHHHhhceEEEEEcCCcC----------------CCHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHHHH-H---
Confidence 3689999999999999997 543 24688899999999999999998 74322 11110 0
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
......+.+...|+++..++. ....|.|++|||++ +++||+.|+...-+..
T Consensus 331 --~~~~~~~~l~~~gv~i~~~~~----------------g~~lH~K~~iiD~~-----------~~~vGS~N~~~rS~~l 381 (438)
T COG1502 331 --AYRAYLKELLEAGVKVYEYPG----------------GAFLHSKVMIIDDR-----------TVLVGSANLDPRSLRL 381 (438)
T ss_pred --HHHHHHHHHHHhCCEEEEecC----------------CCcceeeEEEEcCC-----------EEEEeCCcCCHhHHHH
Confidence 012345667778888755431 04799999999999 9999999998753310
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHHHHHHhc
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQG 366 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~ 366 (744)
| -.+.+.|+.| .+.++...|...|....
T Consensus 382 ---------------N--------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 382 ---------------N--------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred ---------------h--------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 0 1557888888 89999999997776543
|
|
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-07 Score=89.40 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCCCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
|++| +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.|++.++..-...+.||++.
T Consensus 70 vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 70 VVKK-SVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 5677 89999999999986432 247999999999887 899999999999997544578888874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-07 Score=88.20 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=56.7
Q ss_pred CCCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|+++ +.||+|||+|.|.+.+ ....|.|+|+|.|.++ +++||++.|+.. ..|+..+.|.+++..-+++.
T Consensus 58 v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 58 VKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred cccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence 4566 8999999999999986 3577999999999776 799999999876 46888899999987656543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=98.38 E-value=5e-07 Score=84.96 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=44.9
Q ss_pred CCCCCCCCCccceeEEEeccc--CCceEEEEEEeCCCCC-CeeEEEEEeecccccC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH--MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG 53 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah--~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~ 53 (744)
|++| +.||+|||+|.|+..+ ..+.|.|+|+|.|.++ +++||++.|+++....
T Consensus 65 vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 65 VIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred eecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 4677 8999999999998543 4789999999999985 8999999999997663
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-07 Score=88.78 Aligned_cols=67 Identities=28% Similarity=0.492 Sum_probs=57.0
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
+++ +.||+|||+|.|.+++. ...|.|+|+|.|.++ +++||++.|++.. +|+..+-|.+++..-+++.
T Consensus 61 ~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 61 AKH-KINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred eeC-CCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 456 99999999999999984 466999999999988 7999999999985 7888888999886556554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-07 Score=87.55 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=50.2
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
|++| +.||+|||+|.|.+.++...|.|.|+|.|.++ +++||.+.+++.++++....
T Consensus 39 vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 39 VIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred eEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 4567 89999999999999999999999999999887 79999999999999865544
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.5e-07 Score=85.30 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=46.6
Q ss_pred CCCCCCCCCccceeEEEeccc-----CCceEEEEEEeCCCCC-CeeEEEEEeecccccCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG 54 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g 54 (744)
|++| +.||+|||+|.|++.. ....|.|.|+|.|.++ +++||++.||+.++...
T Consensus 61 v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 61 VKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred cCcC-CCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 4677 8999999999999876 2468999999999888 89999999999999843
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=83.24 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=51.8
Q ss_pred CCCCCCCCCcc-ceeEEEecccCCceEEEEEEeCCCCC----CeeEEEEEeecccccCCC---ccceEEecc
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHMASNIIFTVKDDNPIG----ATLIGRAYVPVEEVLGGE---EVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~~~~l~~~vkd~d~~~----~~~iG~~~ip~~~~~~g~---~v~~w~~l~ 64 (744)
|++| +.||+| ||+|.|.+. ....|+|.|+|.+..+ +++||++.||+.+++.++ ....||++.
T Consensus 51 v~~~-tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 51 IVEN-TINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred eEcC-CCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 4567 899999 999999985 4578999999987543 699999999999999653 467799985
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-07 Score=86.97 Aligned_cols=68 Identities=18% Similarity=0.421 Sum_probs=56.9
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
|+++ +.||+|||+|.|.+.+. ...|.|+|+|.+..+ +++||++.|+.....+|+.++-|.+++..-++
T Consensus 57 v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 57 VVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred cEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 3456 89999999999999752 357999999999766 79999999998888889999999999864344
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-07 Score=85.81 Aligned_cols=69 Identities=23% Similarity=0.452 Sum_probs=54.3
Q ss_pred CCCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| +.||+|||+|.|.+... ...|.|+|+|.|..+ +++||++.|....+ .++..+.|+.+++..++++
T Consensus 57 v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 57 CMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred cccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhCCCCEe
Confidence 4677 99999999999998652 235999999999776 89999999765333 2446799999998777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-07 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=18.3
Q ss_pred eEeeeeEEEEeceEEEEcCccCCccc
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRS 617 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS 617 (744)
...|+|++||||+++.|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47999999999999999999999875
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-06 Score=96.28 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
|.+| +.||+|||+|.|++.-+ .+-|.|.|.|.|..+ +++||.+.|||+.+..|- ++++|.+.+|++++. .+
T Consensus 457 v~nN-g~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~---~~ 529 (537)
T PLN02223 457 VKNN-EWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS---TM 529 (537)
T ss_pred eCCC-CcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC---ce
Confidence 3456 99999999999998765 467899999999865 899999999999999997 788999999998743 34
Q ss_pred EEEEe
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
+.++|
T Consensus 530 Ll~~f 534 (537)
T PLN02223 530 LLTRF 534 (537)
T ss_pred EEEEE
Confidence 45554
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=79.67 Aligned_cols=61 Identities=16% Similarity=0.389 Sum_probs=49.8
Q ss_pred CCCCCCCCCccceeEEEe-c--ccC-CceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEe
Q 004579 1 MLKKEQSNPRWYESFHIY-C--AHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVE 62 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~-~--ah~-~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~ 62 (744)
|++| +.||+|||+|.|. + ++. ...|.|+|+|.+.+++++||.+.|++.++..++.-+-|+.
T Consensus 58 v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 58 TVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred eecC-CCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3566 8999999999996 3 232 4689999999997788999999999999997776665554
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.8e-06 Score=97.05 Aligned_cols=77 Identities=16% Similarity=0.338 Sum_probs=64.3
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
||+| +.||+|||+|.|++.-+ .+-|.|.|+|.|..+ +++||.+.||+..|..|- +|++|.+.+|+++. ..+
T Consensus 519 vi~n-N~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~---~a~ 591 (599)
T PLN02952 519 IIED-NWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK---NVR 591 (599)
T ss_pred eccC-CCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC---CEE
Confidence 4677 69999999999987765 467899999999876 799999999999999998 59999999998773 345
Q ss_pred EEEEee
Q 004579 79 VKLQYF 84 (744)
Q Consensus 79 V~lqf~ 84 (744)
+.++|.
T Consensus 592 Llv~f~ 597 (599)
T PLN02952 592 LLMRFI 597 (599)
T ss_pred EEEEEE
Confidence 666553
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=78.02 Aligned_cols=53 Identities=28% Similarity=0.455 Sum_probs=45.7
Q ss_pred CCCCCCCCCccceeEEEecccC-----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 55 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~ 55 (744)
|++| +.||+|| +|.|++.+. ...|.|.|+|.|.+| +++||++.++++++..++
T Consensus 44 vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 44 VIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred Eecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCC
Confidence 4677 8999999 799997653 578999999999987 799999999999998544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-06 Score=79.32 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=44.6
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeeccccc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL 52 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~ 52 (744)
++| +.||+|||+|.|++..+ .+.|.|+|+|.|.++ +++||++.|++++.+
T Consensus 41 v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 41 IPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred EEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 566 89999999999998765 578999999999886 799999999999886
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.7e-06 Score=77.59 Aligned_cols=48 Identities=15% Similarity=0.432 Sum_probs=40.8
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeC-------CCCC-CeeEEEEEeeccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDD-------NPIG-ATLIGRAYVPVEE 50 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~-------d~~~-~~~iG~~~ip~~~ 50 (744)
+|++ +.||+|||+|.|++. ....|.|+|.|. |..+ +++||+++|.++.
T Consensus 37 ~i~~-TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 37 VCRD-TTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred eecC-CCCCccceEEEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 4667 999999999999997 477999999997 4555 7999999998853
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.4e-06 Score=71.02 Aligned_cols=61 Identities=25% Similarity=0.569 Sum_probs=54.6
Q ss_pred CCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-CCCccceEEec
Q 004579 2 LKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEI 63 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l 63 (744)
+.+ +.||.|||+|.|++.. ....|.|.|.|.+..+ ..+||.+.+++.++. .+...+.|++|
T Consensus 39 ~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 39 VKN-TLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eCC-CCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 345 7899999999999998 7789999999999887 799999999999998 78888889875
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.8e-06 Score=72.21 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=48.4
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCcc
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 57 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v 57 (744)
+.+ +.||.|||.|.|++.+. .+.|.|.|+|.+..+ +.+||.+.||+.++..|..-
T Consensus 42 ~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 42 VKN-TLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred ecC-CCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence 345 66999999999999998 899999999999876 89999999999999876644
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-06 Score=81.01 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=52.9
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCC-CccceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g-~~v~~w~~l~~~~~k~ 70 (744)
.++ +.||+|||+|.|++.+. ...|.|+|+|.|.++ +++||++.|+... .| +..+.|+.++...+++
T Consensus 60 ~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~--~~~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 60 RRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS--SGEEEEEHWNEMKESKGQQ 130 (138)
T ss_pred ecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC--CCchHHHHHHHHHhCCCCE
Confidence 445 89999999999999873 368999999999776 7999999999874 34 3567898888655554
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=90.63 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCCCCCCCccceeEEEecccC---CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 2 LKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~---~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
.++ +.||+|||+|.|++++. ...|.|+|.|.|.++ .++||++.||+..+......+.|.++........+.+++|
T Consensus 209 ~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel 287 (421)
T KOG1028|consen 209 HRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGEL 287 (421)
T ss_pred eec-CcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceE
Confidence 345 89999999999999984 689999999999998 7999999999999987776999999987533334344799
Q ss_pred EEEEEeeccccc
Q 004579 78 HVKLQYFDVTKD 89 (744)
Q Consensus 78 rV~lqf~p~~~~ 89 (744)
-+.++|.|....
T Consensus 288 ~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 288 LLSLCYLPTAGR 299 (421)
T ss_pred EEEEEeecCCCe
Confidence 999999988433
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-06 Score=79.18 Aligned_cols=69 Identities=10% Similarity=0.403 Sum_probs=52.2
Q ss_pred CCCCCC-CCCccceeEEEecccCC--ceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCC
Q 004579 1 MLKKEQ-SNPRWYESFHIYCAHMA--SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 71 (744)
Q Consensus 1 vi~n~~-~~P~Wne~F~~~~ah~~--~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~ 71 (744)
|++| + .||+|||+|.|.+++.. ..+.+.|.|.|.++ +++||++.++.+.. .|+..+-|.+.+..-+|++
T Consensus 57 v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 57 LVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred cEEC-CCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 3456 5 46999999999999854 35666677777665 79999999999874 4566899999986545543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=97.77 E-value=7e-05 Score=86.64 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCC-CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPI-GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~-~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
|++| +-||+|||+|.|++.-+ .+-|-|.|.|.|.. ++++||.+.||++.|..|= +.++|.+.+|.+++.
T Consensus 518 v~~n-~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~ 588 (598)
T PLN02230 518 IEYD-TWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS 588 (598)
T ss_pred ccCC-CCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC
Confidence 4566 99999999999998876 58899999999985 4899999999999999886 467999999998744
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.6e-05 Score=64.95 Aligned_cols=44 Identities=32% Similarity=0.521 Sum_probs=38.3
Q ss_pred CCCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAY 45 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ 45 (744)
+++| +.+|+|||+|.|++.. ..+.|.|.|.|.+..+ +++||+++
T Consensus 40 ~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 40 VKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp CBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 4567 8999999999999554 5677999999999999 89999985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=84.40 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=65.9
Q ss_pred CCCCCCCCCcc-ceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 1 MLKKEQSNPRW-YESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 1 vi~n~~~~P~W-ne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
+++| +.||+| ||+|.|++..+ .+-|-|.|+|.|..+ +++||.+.||++.|..|= +.++|.+.+|++.. .++|
T Consensus 480 ~~~n-~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atL 554 (567)
T PLN02228 480 TAVD-QWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRL 554 (567)
T ss_pred ccCC-CCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEE
Confidence 3567 789999 99999998876 488999999999664 899999999999999885 47899999999874 4556
Q ss_pred EEEEEeecc
Q 004579 78 HVKLQYFDV 86 (744)
Q Consensus 78 rV~lqf~p~ 86 (744)
-|.+.+.+.
T Consensus 555 fv~~~~~~~ 563 (567)
T PLN02228 555 LVSFALDPP 563 (567)
T ss_pred EEEEEEcCc
Confidence 665555543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=84.64 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=62.1
Q ss_pred CCCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
+|+| +.||+|||+|.|++..+ .+-|-|.|+|.|..+ +++||.+.|||+.|..|= +.++|.+.+|.++.. +.+-
T Consensus 501 ~v~n-n~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lf 575 (581)
T PLN02222 501 TLED-NWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLL 575 (581)
T ss_pred ecCC-CCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEE
Confidence 4567 68999999999998776 588999999999755 899999999999999885 467999999998744 4444
Q ss_pred EEE
Q 004579 79 VKL 81 (744)
Q Consensus 79 V~l 81 (744)
+.+
T Consensus 576 v~~ 578 (581)
T PLN02222 576 VKV 578 (581)
T ss_pred EEE
Confidence 433
|
|
| >KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=71.85 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhc--CCeEEEEEeCCC-cccccccc
Q 004579 143 PHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE--GVRVCMLVWDDR-TSVSLLKK 219 (744)
Q Consensus 143 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~r--GV~VriLvwD~~-~s~~~~~~ 219 (744)
|.++|+.+...|.+||++|+|++ +||-. ....|.+.|..+.+. -.+|.||+ |.. |+......
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~las------LYlG~--------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~ 101 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLAS------LYLGK--------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNS 101 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeee------eccch--------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCccc
Confidence 45789999999999999999996 34432 367899999888765 79999998 874 32221110
Q ss_pred ccccCCCcHHHHHHhcCCCcEEEEcCCCCC-CCC--cceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEccccc
Q 004579 220 DGLMATHDEETEKFFQGTDVHCILCPRNPD-DGG--SFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDL 296 (744)
Q Consensus 220 ~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~-~~~--~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL 296 (744)
-. |....--.+++. ..|+|.++.. |. .+. +++-....-..+..|-|+.-+|++ ..+-|.|+
T Consensus 102 ~s-~llp~~l~kkf~--e~vd~~lyht-p~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde------------viiSGanl 165 (469)
T KOG3964|consen 102 CS-ALLPVWLGKKFP--ERVDESLYHT-PFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE------------VIISGANL 165 (469)
T ss_pred ch-hhchHHHhhhhh--hhhceeeecC-hhhhhhhhhcCchhhccccchhhhhhhcccHh------------hhcccccc
Confidence 00 000000011222 2466665531 11 000 011011122356799999999996 57889999
Q ss_pred CCCCCC
Q 004579 297 CDGRYD 302 (744)
Q Consensus 297 ~~~R~D 302 (744)
+..++.
T Consensus 166 s~dyfT 171 (469)
T KOG3964|consen 166 SNDYFT 171 (469)
T ss_pred hhhhhc
Confidence 998553
|
|
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=81.30 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=81.0
Q ss_pred HHHHHHHHhccc-----EEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEecCCCCCC
Q 004579 438 DAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 438 ~ay~~aI~~A~~-----~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP~~p~g~ 512 (744)
...++.|++|.+ .|.|+- |-+++ +. .++.++.+|+++| ++|.|++-...-++
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~-----~s---------------~ii~aL~~Aa~~G--k~V~v~veLkArfd 398 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSK-----DS---------------PIIDALIEAAENG--KEVTVVVELKARFD 398 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecC-----Cc---------------HHHHHHHHHHHcC--CEEEEEEEehhhcc
Confidence 567889999998 899965 54432 11 4678888999999 77888887433221
Q ss_pred CCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhcceee
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
. ..+. . ..+.|.++|+++ +|++ + ..
T Consensus 399 e-~~ni----~------------wa~~le~aG~~v-------iyg~------------~-------------------~~ 423 (672)
T TIGR03705 399 E-EANI----R------------WARRLEEAGVHV-------VYGV------------V-------------------GL 423 (672)
T ss_pred c-hhhH----H------------HHHHHHHcCCEE-------EEcC------------C-------------------Ce
Confidence 1 1222 2 356789999976 2322 1 14
Q ss_pred EeeeeEEEEec-------eEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 593 YVHAKMMIVDD-------EYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 593 yvHSK~mIVDD-------~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
.+|||+|+||. .|+.|||.|+|....... +++++..-++.
T Consensus 424 k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~ 470 (672)
T TIGR03705 424 KTHAKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPE 470 (672)
T ss_pred eeeeEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChH
Confidence 89999999997 489999999999976555 66777654443
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=84.81 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=64.2
Q ss_pred CCCCCCCCccceeEEEecccC-CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~-~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+.|.+-||.|+|+|.|++.-+ .+-|-|.|.|.|..+ ++++|...||++++..|= +-+||.+..|+.+. .++|-|
T Consensus 664 v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~-~asLfv 739 (746)
T KOG0169|consen 664 VKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALS-SASLFV 739 (746)
T ss_pred eccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCcccc-ceeEEE
Confidence 445599999999999999997 489999999999998 899999999999999884 45789988998773 344444
Q ss_pred EEEe
Q 004579 80 KLQY 83 (744)
Q Consensus 80 ~lqf 83 (744)
.+++
T Consensus 740 ~i~~ 743 (746)
T KOG0169|consen 740 RIAI 743 (746)
T ss_pred EEEE
Confidence 4443
|
|
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.7e-05 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.4
Q ss_pred cccCceeEEEEcCCCCCCCCcccceEEEEcccccCCC
Q 004579 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 299 (744)
Q Consensus 263 ~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~ 299 (744)
..++|+|++|||++ .+|+||.|++..
T Consensus 2 ~~~~H~K~~v~D~~-----------~~~iGs~N~~~~ 27 (28)
T smart00155 2 DGVLHTKLMIVDDE-----------IAYIGSANLDGR 27 (28)
T ss_pred CCcEEeEEEEEcCC-----------EEEEeCccCCCC
Confidence 35799999999999 999999999864
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00071 Score=66.68 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhh-hcCCeEEEEE
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLV 207 (744)
Q Consensus 147 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA-~rGV~VriLv 207 (744)
.++++..|++|++.|||+-..+.|-+ ....+.. ....|+++|++|| +|||+||+|+
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~-~~~~~~~----YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTS-RYSKPNR----YWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCee-ecCCCCC----cchhHHHHHHHHHHHcCCeEEEEE
Confidence 58999999999999999999888843 3322222 4669999999998 8999999999
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=81.52 Aligned_cols=72 Identities=24% Similarity=0.522 Sum_probs=56.2
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCC------------CCeeEEEEEeecccccCCCccceEEecccCCCCCCCC
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPI------------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISS 73 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~------------~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~ 73 (744)
..||+|||.|||.|-+..+.|.+.|.|.|.- ++|++|...|.|..+ +|+ .|.||+|-..--|.. .
T Consensus 337 ~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtl-sge-mdvwynlekrtdksa-v 413 (1283)
T KOG1011|consen 337 ELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL-SGE-MDVWYNLEKRTDKSA-V 413 (1283)
T ss_pred ccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEec-ccc-hhhhcchhhccchhh-c
Confidence 6899999999999999999999999998731 579999999999876 676 789999964322322 3
Q ss_pred CceEEEE
Q 004579 74 GSKIHVK 80 (744)
Q Consensus 74 ~~~IrV~ 80 (744)
.++||+-
T Consensus 414 sgairlh 420 (1283)
T KOG1011|consen 414 SGAIRLH 420 (1283)
T ss_pred cceEEEE
Confidence 4455543
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00033 Score=84.46 Aligned_cols=86 Identities=19% Similarity=0.355 Sum_probs=68.3
Q ss_pred CCCCCCCCCccceeEEEecccCCceEEEEEEeCC-CCCCeeEEEEEeecccccCCCccce-EEecccCCCCCCCCCceEE
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDN-PIGATLIGRAYVPVEEVLGGEEVDK-WVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d-~~~~~~iG~~~ip~~~~~~g~~v~~-w~~l~~~~~k~~k~~~~Ir 78 (744)
|.+| ..||+|||+|.|++.-..+.|.+.+.|.+ .-.+.++|+++|++..+..-..+.. -+.+. .+.|+. +.|.
T Consensus 477 v~~n-t~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~ 551 (1227)
T COG5038 477 VKKN-TLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLT 551 (1227)
T ss_pred eeec-cCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEE
Confidence 4567 99999999999999999999999999954 5558999999999999885444433 55554 456644 8899
Q ss_pred EEEEeeccccccc
Q 004579 79 VKLQYFDVTKDRS 91 (744)
Q Consensus 79 V~lqf~p~~~~~~ 91 (744)
.-++|.|....-.
T Consensus 552 yDl~ffp~~e~k~ 564 (1227)
T COG5038 552 YDLRFFPVIEDKK 564 (1227)
T ss_pred EeeeeecccCCcc
Confidence 9999998876543
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=64.50 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=41.8
Q ss_pred CCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccC
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLG 53 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~ 53 (744)
+.||+|||+|+|++ +-+.+++|+|+|+..-..-+||..-|++++|.+
T Consensus 42 srnd~WnE~F~i~V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 42 SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCCCcccceEEEEe-cCCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 67999999999999 679999999999976557899999999998863
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0034 Score=66.29 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccCC
Q 004579 146 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMAT 225 (744)
Q Consensus 146 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~~~ 225 (744)
+-+.+-..|.+|++-|-|..-.|. | ..-|.|+|..+-+|||-||||+ |..+...|...-.-+..
T Consensus 135 IKE~vR~~I~~A~kVIAIVMD~FT-------D--------~dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKVIAIVMDVFT-------D--------VDIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEKLGV 198 (284)
T ss_pred HHHHHHHHHHHhcceeEEEeeccc-------c--------HHHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHHCCC
Confidence 568899999999999999864442 1 3567776666669999999999 98765533221000111
Q ss_pred CcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCCCC
Q 004579 226 HDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPF 305 (744)
Q Consensus 226 ~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt~~ 305 (744)
+ ...++ +++|+...- ..+........-+..|+|+++||++ .+..|+-=++.. +..-
T Consensus 199 ~----~~~~~--nmrVRsv~G-----~~y~~rsg~k~~G~~~eKF~lvD~~-----------~V~~GSYSFtWs--~~~~ 254 (284)
T PF07894_consen 199 N----LQHLK--NMRVRSVTG-----CTYYSRSGKKFKGQLKEKFMLVDGD-----------KVISGSYSFTWS--SSRV 254 (284)
T ss_pred C----hhhcC--CeEEEEecC-----CeeecCCCCeeeCcccceeEEEecc-----------cccccccceeec--cccc
Confidence 1 12233 344432210 0011111123467899999999999 888888755532 1111
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeChHHHHHHHHHHHHH
Q 004579 306 HSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRW 362 (744)
Q Consensus 306 H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gpaa~dl~~~F~~rW 362 (744)
| +-+-..+.|.+|.....-|..-.
T Consensus 255 ~---------------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 255 H---------------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred c---------------------------------cceeEEEeccccchHhHHHHHHH
Confidence 1 13457789999999998887653
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=78.37 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHHHhCCceEEEEEec
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 506 (744)
Q Consensus 434 ~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~~~g~~v~V~IvlP 506 (744)
.....++.+||.+||++|||+.=.|-|..|.+.+. .+ -++..+...|.+|+++| |+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~----~D-----~~g~RL~~lL~rKAkrG--VkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF----HD-----HESSRLDSLLEAKAKQG--VQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC----CC-----chHHHHHHHHHHHHHCC--CEEEEEEE
Confidence 46789999999999999999765554443332110 00 13567788888888888 89998743
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00016 Score=78.45 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=56.0
Q ss_pred CCCCCCCCccceeEEEecccC--CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccC-CCC
Q 004579 2 LKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE-DRN 69 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~--~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~-~~k 69 (744)
|+- +.||+|||+|.|.+--. .-.|-+.|.|=|..+ .|++|..++-+++|. ...+++||.|++. .|+
T Consensus 224 ik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 224 IKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQEEGE 293 (683)
T ss_pred hhh-hcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhhcCc
Confidence 444 78999999999997653 577999999999887 799999999999998 5679999999974 555
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00069 Score=78.37 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=63.2
Q ss_pred CCCCCCCCCccc-eeEEEecccC-CceEEEEEEeCCCCCC-eeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 1 MLKKEQSNPRWY-ESFHIYCAHM-ASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 1 vi~n~~~~P~Wn-e~F~~~~ah~-~~~l~~~vkd~d~~~~-~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
|++| +.||+|| |+|+|.+..+ .+-|-|.|.|.|++++ .+||.|..||.-|..|= +-+||-|...+.+.. +++
T Consensus 1108 V~dN-GlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlEL-aSL 1182 (1267)
T KOG1264|consen 1108 VNDN-GLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLEL-ASL 1182 (1267)
T ss_pred eccC-CCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhhh-hhh
Confidence 6788 9999999 9999999987 4889999999999995 89999999999998884 345676643333322 334
Q ss_pred EEEEEeecccc
Q 004579 78 HVKLQYFDVTK 88 (744)
Q Consensus 78 rV~lqf~p~~~ 88 (744)
-|.++.+|+..
T Consensus 1183 Lv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1183 LVFIEMRPVLE 1193 (1267)
T ss_pred eeeeEeccccC
Confidence 45555566553
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0015 Score=73.00 Aligned_cols=74 Identities=18% Similarity=0.410 Sum_probs=60.3
Q ss_pred CCCCccc-eeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeeccccc-C---------CCccceEEecccCCCCC
Q 004579 6 QSNPRWY-ESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-G---------GEEVDKWVEILDEDRNP 70 (744)
Q Consensus 6 ~~~P~Wn-e~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~-~---------g~~v~~w~~l~~~~~k~ 70 (744)
+.||.|| +-|.|.|.+ ....|.++++|.|..+ .|-||+++|.++.++ + |.++.+|||+.+.-.-
T Consensus 46 slnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg- 124 (1169)
T KOG1031|consen 46 SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG- 124 (1169)
T ss_pred hcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-
Confidence 7899999 778888877 3578999999999998 599999999999886 1 5789999999975322
Q ss_pred CCCCceEEEEEE
Q 004579 71 ISSGSKIHVKLQ 82 (744)
Q Consensus 71 ~k~~~~IrV~lq 82 (744)
+.+.|.|.++
T Consensus 125 --irgeinvivk 134 (1169)
T KOG1031|consen 125 --IRGEINVIVK 134 (1169)
T ss_pred --ccceeEEEEE
Confidence 3577777655
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00083 Score=76.95 Aligned_cols=79 Identities=19% Similarity=0.443 Sum_probs=60.6
Q ss_pred CCCCCCCccceeEEEeccc-CCceEEEEEEeCCCC-------------------------------------CCeeEEEE
Q 004579 3 KKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPI-------------------------------------GATLIGRA 44 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~-------------------------------------~~~~iG~~ 44 (744)
+.++.||+|||+|.|.+.+ ..+..++-|.|.|-- .+|++|+.
T Consensus 184 k~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGci 263 (1103)
T KOG1328|consen 184 KKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCI 263 (1103)
T ss_pred ccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccccccc
Confidence 4458999999999999999 567788888776520 16899999
Q ss_pred EeecccccCCCccceEEecccCCCCCCCCCceEEEEEEe
Q 004579 45 YVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 83 (744)
Q Consensus 45 ~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV~lqf 83 (744)
.||+.+|- -.-+|.||.|..-+.|. |..+.+|+.++-
T Consensus 264 Nipl~EiP-~~Gld~WFkLepRS~~S-~VqG~~~LklwL 300 (1103)
T KOG1328|consen 264 NIPLAEIP-PDGLDQWFKLEPRSDKS-KVQGQVKLKLWL 300 (1103)
T ss_pred ccchhcCC-cchHHHHhccCcccccc-cccceEEEEEEE
Confidence 99999996 34489999998655443 356677776654
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0025 Score=77.15 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=61.9
Q ss_pred CCCCCCCCccceeEEEeccc-CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCC-CCCCceEE
Q 004579 2 LKKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP-ISSGSKIH 78 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah-~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~-~k~~~~Ir 78 (744)
++. +.||+|||+|.|++.. ....++|.|+|-|..+ +++||.+.|+++.+..|..-.--.++ + ||- ....+.++
T Consensus 1080 ~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-d--gk~~~~~~g~~~ 1155 (1227)
T COG5038 1080 VKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-D--GKTFIVLDGTLH 1155 (1227)
T ss_pred hhc-cCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-c--CcceEecccEee
Confidence 455 8999999999999885 6788999999999987 69999999999999977755544555 3 442 33456666
Q ss_pred EEEEeecc
Q 004579 79 VKLQYFDV 86 (744)
Q Consensus 79 V~lqf~p~ 86 (744)
....|++.
T Consensus 1156 ~~~~~r~~ 1163 (1227)
T COG5038 1156 PGFNFRSK 1163 (1227)
T ss_pred cceecchh
Confidence 65555543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0037 Score=59.29 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCC--CccceeEEEecccC------------------------CceEEEEEEeCCCCC-CeeEEEEEeecccccCCC
Q 004579 6 QSN--PRWYESFHIYCAHM------------------------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 55 (744)
Q Consensus 6 ~~~--P~Wne~F~~~~ah~------------------------~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~ 55 (744)
+.| |+||++|.|++.++ ...|+|+|.|+|.++ +++||.+.++++.+..+.
T Consensus 49 slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 49 SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 566 99999999998872 367999999999988 799999999999887654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.031 Score=55.31 Aligned_cols=56 Identities=30% Similarity=0.533 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcccEEEEeecccccccc------ccccCCCCcchhhhcccchHHHHHHHHH-HHHhCCceEEEEEecCCC
Q 004579 437 QDAYIHAIRRAKNFIYIENQYFLGSSF------AWSADGIKPEEINALHLIPKELSLKIVS-KIEAGERFTVYIVVPMWP 509 (744)
Q Consensus 437 ~~ay~~aI~~A~~~IyIenqYFi~~~~------~~~~~~~~~~~~~~~n~i~~~la~~ia~-a~~~g~~v~V~IvlP~~p 509 (744)
.+|.+++|..|++||||+--=++|... -||. |-.+|.+ |+.|| |+|++++..|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------------ID~ALR~AA~~R~--V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------------IDDALRRAAIERG--VKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------------HHHHHHHHHHHcC--CeEEEEEeecC
Confidence 679999999999999999655555322 3542 2234433 46788 99999999986
Q ss_pred CC
Q 004579 510 EG 511 (744)
Q Consensus 510 ~g 511 (744)
..
T Consensus 145 ht 146 (177)
T PF13918_consen 145 HT 146 (177)
T ss_pred CC
Confidence 43
|
|
| >COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.9 Score=50.41 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHhccc---EEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccc
Q 004579 144 HRCWEDIFDAITNARH---MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~---~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~ 220 (744)
-+.|+.+.+-|++|-. -+-| .+.|.|.+. ...+.++|.+||+.|-+|-+|| +.... |..
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYRt~~------dSpIV~ALi~AA~nGKqVtvlV--ELkAR--FDE- 412 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAI-------KQTLYRTSK------DSPIVRALIDAAENGKQVTVLV--ELKAR--FDE- 412 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEE-------EEEEEecCC------CCHHHHHHHHHHHcCCeEEEEE--EEhhh--cCh-
Confidence 4678889999988853 2222 234555543 6799999999999999999998 11111 110
Q ss_pred cccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCC
Q 004579 221 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSP 276 (744)
Q Consensus 221 g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~ 276 (744)
..+-.+.+.|+.+||||+.- -..+..|-|+++|=.+
T Consensus 413 ----E~NI~WAk~LE~AGvhVvyG----------------~~glKtHAKm~lVvRr 448 (696)
T COG0855 413 ----EANIHWAKRLERAGVHVVYG----------------VVGLKTHAKMLLVVRR 448 (696)
T ss_pred ----hhhhHHHHHHHhCCcEEEec----------------ccceeeeeeEEEEEEe
Confidence 01124678899999998741 1246789999888655
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0043 Score=70.09 Aligned_cols=66 Identities=35% Similarity=0.590 Sum_probs=51.2
Q ss_pred CCCCCCCCccceeEEEeccc---CCceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCC
Q 004579 2 LKKEQSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 70 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~ 70 (744)
.++ +.||+|||+|.|.|.- ....|.|+|.|.|.+| .++||.+.|.... .|..+.-|.+.++.-++|
T Consensus 342 ~~~-~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~p 411 (421)
T KOG1028|consen 342 KKK-TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKP 411 (421)
T ss_pred ccC-CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCc
Confidence 355 8999999999997663 1357999999999998 5899999988775 566677777777544444
|
|
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.042 Score=58.25 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHhcccEEEEeeccccccccccccCCCCcchhhhcccchHHHHHHHHHHH-HhCCceEEEEEecCCCCC
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWPEG 511 (744)
Q Consensus 433 e~sI~~ay~~aI~~A~~~IyIenqYFi~~~~~~~~~~~~~~~~~~~n~i~~~la~~ia~a~-~~g~~v~V~IvlP~~p~g 511 (744)
..+|.+...+.|++|++-|=|..--|.- .+|..-|..|+ +|+ |-|||++..
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD----------------------~dIf~DLleAa~kR~--VpVYiLLD~---- 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTD----------------------VDIFCDLLEAANKRG--VPVYILLDE---- 183 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeecccc----------------------HHHHHHHHHHHHhcC--CcEEEEech----
Confidence 4579999999999999999999888862 23455566666 778 899999985
Q ss_pred CCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCcccccCCccCCCCCCCCchhHHHHHhhccee
Q 004579 512 FPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFM 591 (744)
Q Consensus 512 ~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~ 591 (744)
.+++.++. .-.+.++...--..+++-++ . +-.|.- ...+.+.
T Consensus 184 ----~~~~~Fl~---------------Mc~~~~v~~~~~~nmrVRsv-----~-G~~y~~-------------rsg~k~~ 225 (284)
T PF07894_consen 184 ----QNLPHFLE---------------MCEKLGVNLQHLKNMRVRSV-----T-GCTYYS-------------RSGKKFK 225 (284)
T ss_pred ----hcChHHHH---------------HHHHCCCChhhcCCeEEEEe-----c-CCeeec-------------CCCCeee
Confidence 33433322 22333443210011111111 0 011211 0112456
Q ss_pred eEeeeeEEEEeceEEEEcCccCCcccccCC
Q 004579 592 IYVHAKMMIVDDEYIIIGSANINQRSMEGA 621 (744)
Q Consensus 592 iyvHSK~mIVDD~~~iIGSANin~RS~~g~ 621 (744)
+-+|.|.||||.+.|+-||.-+..-|-..+
T Consensus 226 G~~~eKF~lvD~~~V~~GSYSFtWs~~~~~ 255 (284)
T PF07894_consen 226 GQLKEKFMLVDGDKVISGSYSFTWSSSRVH 255 (284)
T ss_pred CcccceeEEEecccccccccceeecccccc
Confidence 789999999999999999999998888765
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.018 Score=66.65 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCCCCCCccceeEEEecccCCceEEEEEEeCCCCCCeeEEEEEeecccccCCCccceEEeccc--CCCCCCCCCceEEE
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILD--EDRNPISSGSKIHV 79 (744)
Q Consensus 2 i~n~~~~P~Wne~F~~~~ah~~~~l~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~--~~~k~~k~~~~IrV 79 (744)
|.. +.-|-|.|.|+|.+.-.-..|.|-|+|.|.--++.||++-|.=|+|..-.-.|.||.|.. +|.+ ..++||+
T Consensus 45 v~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsE---VQG~v~l 120 (800)
T KOG2059|consen 45 VEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSE---VQGKVHL 120 (800)
T ss_pred hhh-hcCCccccceEEecCcceeeEEEEEeccccccccccceeeeeHHHHhhCCCCccceeccccCCChh---hceeEEE
Confidence 344 788999999999998888899999999994449999999999999998778999999854 3443 5689999
Q ss_pred EEEeecccccc
Q 004579 80 KLQYFDVTKDR 90 (744)
Q Consensus 80 ~lqf~p~~~~~ 90 (744)
.+++.+...+.
T Consensus 121 ~l~~~e~~~~~ 131 (800)
T KOG2059|consen 121 ELALTEAIQSS 131 (800)
T ss_pred EEEeccccCCC
Confidence 99999877653
|
|
| >COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.21 Score=49.57 Aligned_cols=141 Identities=20% Similarity=0.288 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 223 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~g~~ 223 (744)
+.....+.+.|+.|.+...+..++- .+ +-.-+.+.|..+.++||++|+|- ++.-..
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit--------~s------G~sll~~~L~d~~~Kgvkgkilt-s~Ylnf--------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFIT--------ES------GLSLLFDLLLDLVNKGVKGKILT-SDYLNF--------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEee--------Cc------cHHHHHHHHHHHhcCCceEEEec-ccccCc---------
Confidence 4567899999999999988887763 22 35788899999999999999997 443221
Q ss_pred CCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCCC
Q 004579 224 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 303 (744)
Q Consensus 224 ~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~Dt 303 (744)
|++...++.+.-.+|+|+.+.-. ...+|-|-.|.-... ...|++|+.||++.-.-
T Consensus 94 -TdP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~--------~~taiiGSsNlt~sALt- 148 (198)
T COG3886 94 -TDPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT--------GITAIIGSSNLTDSALT- 148 (198)
T ss_pred -cCHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc--------eEEEEEccchhhhhhcc-
Confidence 22234455555556887765311 245777777754432 23899999999987431
Q ss_pred CCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeee-eeeeeeChHHHHHHHHHHHHHHH
Q 004579 304 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHD-IHSRLEGPIAWDVLFNFEQRWRK 364 (744)
Q Consensus 304 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhD-v~~~i~Gpaa~dl~~~F~~rW~~ 364 (744)
.. ..|-- +...-.|-.|..+...|+.-|..
T Consensus 149 ~n-------------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 149 VN-------------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred cC-------------------------------HHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 11 12311 12223688999999999999973
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.027 Score=52.56 Aligned_cols=58 Identities=24% Similarity=0.521 Sum_probs=47.2
Q ss_pred CCCCccceeEEEecc--------c--------CCceEEEEEEeCCCC-----------CCeeEEEEEeeccccc-CCCcc
Q 004579 6 QSNPRWYESFHIYCA--------H--------MASNIIFTVKDDNPI-----------GATLIGRAYVPVEEVL-GGEEV 57 (744)
Q Consensus 6 ~~~P~Wne~F~~~~a--------h--------~~~~l~~~vkd~d~~-----------~~~~iG~~~ip~~~~~-~g~~v 57 (744)
+--|+.|-||.|+|. . ..++|+|+|...++- |+=++|.++||+.+++ .-+-+
T Consensus 58 SFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi 137 (143)
T cd08683 58 SFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI 137 (143)
T ss_pred hcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc
Confidence 667999999999997 2 147899999776543 3458999999999999 45679
Q ss_pred ceEEec
Q 004579 58 DKWVEI 63 (744)
Q Consensus 58 ~~w~~l 63 (744)
.+||||
T Consensus 138 tGW~pi 143 (143)
T cd08683 138 TGWYPI 143 (143)
T ss_pred cccccC
Confidence 999996
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=61.30 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCC-C--CCCCchhHHHHHHHHhhhc--CCeEEEEE--eCCCcc---
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSR-R--PKPGGDIMLGELLKKKASE--GVRVCMLV--WDDRTS--- 213 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~-~--~~~~~~~~l~~lL~~aA~r--GV~VriLv--wD~~~s--- 213 (744)
...-.+-+++|++|+|.|||+. .|++.... . .....+..|.+-+.+|-++ --+|+|++ |-.+..
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN------QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN------QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee------eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 3456788999999999999985 12221111 0 0111344555555555444 57788776 431111
Q ss_pred ---ccc-------cccccccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcce--------eeecccccccCceeEEEEcC
Q 004579 214 ---VSL-------LKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFI--------QDIQISAMFTHHQKIVVVDS 275 (744)
Q Consensus 214 ---~~~-------~~~~g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~--------~~~~~~~~~~hHqKivVVD~ 275 (744)
.++ .++ |..-.....+.|++.|+.-. .+-...+++ .+...+.+.-=|-|++|||+
T Consensus 639 p~~~svqaIl~wQyrT---ms~g~~sI~~~Lka~g~d~~----~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD 711 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRT---MSMGYKSIYKALKAVGLDPA----DYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDD 711 (887)
T ss_pred CCcchHHHHHHHHHHH---HhhhHHHHHHHHHHhcCCcc----ccceeeeeeeeeccccccccceEEEEEEeeeeEEecC
Confidence 100 000 00011234566776666510 000000000 00112234556999999999
Q ss_pred CCCCCCCcccceEEEEcccccCCCCC
Q 004579 276 PMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 276 ~~~~~~~~~~~~vAfvGGinL~~~R~ 301 (744)
+ .+.||+.||.+...
T Consensus 712 ~-----------~vIIGSANINqRSm 726 (887)
T KOG1329|consen 712 E-----------YVIIGSANINQRSM 726 (887)
T ss_pred C-----------EEEEeecccchhhc
Confidence 9 99999999998544
|
|
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.1 Score=43.83 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcc-----cEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeCCCccccccccc
Q 004579 146 CWEDIFDAITNAR-----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKD 220 (744)
Q Consensus 146 ~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD~~~s~~~~~~~ 220 (744)
.|+.+.+-|++|- .+|.|+-|.+ . ....+.++|.+||+.|=+|.++| .-. .. | .-
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~---------a------~~S~iv~aLi~AA~nGK~Vtv~v-ELk-AR-F-DE- 78 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRV---------A------SNSPIVNALIEAAENGKQVTVLV-ELK-AR-F-DE- 78 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS----------------TT-HHHHHHHHHHHTT-EEEEEE-STT-SS-S-TT-
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEec---------C------CCCHHHHHHHHHHHcCCEEEEEE-EEe-cc-c-cH-
Confidence 3556777777773 5777776654 2 25799999999999999999998 221 11 1 00
Q ss_pred cccCCCcHHHHHHhcCCCcEEEEcCCCCCCCCcceeeecccccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCC
Q 004579 221 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 300 (744)
Q Consensus 221 g~~~~~~~~~~~~l~~~gV~~~~~~~~~~~~~~~~~~~~~~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R 300 (744)
..+-.+.+.|+.+||+|..-- ..+--|-|+++|=.+..+ +-+-.+++|-=|....
T Consensus 79 ----e~Ni~Wa~~Le~aGv~ViyG~----------------~glKvHaK~~lI~R~e~~----~~~~Y~hlgTGNyNe~- 133 (352)
T PF13090_consen 79 ----ENNIHWAKRLEEAGVHVIYGV----------------PGLKVHAKICLIVRREGG----GLRRYAHLGTGNYNEK- 133 (352)
T ss_dssp ----CCCCCCCHHHHHCT-EEEE------------------TT-EE--EEEEEEEEETT----EEEEEEEEESS-SSTT-
T ss_pred ----HHHhHHHhhHHhcCeEEEcCC----------------CChhheeeEEEEEEEeCC----cEEEEEEEcCCCcCcc-
Confidence 001135678999999987421 245689999998655111 1223566664443221
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCh-HHHHHHHHHHH
Q 004579 301 YDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQ 360 (744)
Q Consensus 301 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~~i~Gp-aa~dl~~~F~~ 360 (744)
.. .-+-|+.+.-.-| .+.|+...|..
T Consensus 134 ---------------------------------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 ---------------------------------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ---------------------------------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ---------------------------------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 11 2356888777666 78999999854
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.1 Score=62.17 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCC--CCCCchhHHHHHHHHhhh--cCCeEEEEE
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR--PKPGGDIMLGELLKKKAS--EGVRVCMLV 207 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~--~~~~~~~~l~~lL~~aA~--rGV~VriLv 207 (744)
..+.++.++||++|||.|||+.=-|....+.+..+.. ...-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4578999999999999999985212111112211110 001134577888888765 478888887
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=62.47 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCcccCh-hhHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCC--CCCCCchhHHHHHHHHhhh--cCCeEEEEE
Q 004579 137 GGKYYEP-HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSR--RPKPGGDIMLGELLKKKAS--EGVRVCMLV 207 (744)
Q Consensus 137 ~g~~~~~-~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~--~~~~~~~~~l~~lL~~aA~--rGV~VriLv 207 (744)
.|+...- ..+..+.+++|++|||.|||+.=-|....+.+.... ....-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 558 ~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 558 CAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred cccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 3443333 346789999999999999998522211111111000 0001134567777777654 588888877
|
|
| >PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=53.80 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcccEEEEEEeccCcceEEeeCCCCCCCCchhHHHHHHHHhhhcCCeEEEEEeC
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWD 209 (744)
Q Consensus 145 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~l~~lL~~aA~rGV~VriLvwD 209 (744)
...+.+.+.|++|+++|+|..|.= .-..|.+.|++|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~~----------------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPPE----------------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-GG----------------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCHH----------------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 467899999999999999998731 3579999999999999999999955
|
The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.21 Score=59.92 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcccEEEEEE-eccCcceEEeeCCC-CCC-----CCchhHHHHHHHHhhh--cCCeEEEEEeCCC-cc
Q 004579 144 HRCWEDIFDAITNARHMIYITG-WSVYTEISLVRDSR-RPK-----PGGDIMLGELLKKKAS--EGVRVCMLVWDDR-TS 213 (744)
Q Consensus 144 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~-~~~-----~~~~~~l~~lL~~aA~--rGV~VriLvwD~~-~s 213 (744)
..+..+.++||++|+++|||+. |-++. .+-...+. .+. .-....|...|.+|.+ ++-+|+|++ --. +.
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~ss-s~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~peG 575 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGS-SFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMWPEG 575 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhh-hhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCCCCC
Confidence 4578899999999999999985 32222 11111000 000 0123566666776654 588999887 211 11
Q ss_pred cc-----------ccccccccCCCcHHHHHHhcCCCcE------EE-EcCCC----------CC----CCCccee-eecc
Q 004579 214 VS-----------LLKKDGLMATHDEETEKFFQGTDVH------CI-LCPRN----------PD----DGGSFIQ-DIQI 260 (744)
Q Consensus 214 ~~-----------~~~~~g~~~~~~~~~~~~l~~~gV~------~~-~~~~~----------~~----~~~~~~~-~~~~ 260 (744)
.. ..++ |..--....+.|+++|+. +. +|.++ |. ....... +...
T Consensus 576 ~~e~~~vq~il~wq~~T---M~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~r 652 (808)
T PLN02270 576 IPESGSVQAILDWQRRT---MEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEAR 652 (808)
T ss_pred CcccchHHHHHHHHHHH---HHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcc
Confidence 10 0000 111112345667776653 11 22211 10 0000000 0001
Q ss_pred cccccCceeEEEEcCCCCCCCCcccceEEEEcccccCCCCCC
Q 004579 261 SAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYD 302 (744)
Q Consensus 261 ~~~~~hHqKivVVD~~~~~~~~~~~~~vAfvGGinL~~~R~D 302 (744)
+..---|.|++|||++ .+.||+.||....++
T Consensus 653 r~~I~vH~K~~ivDd~-----------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 653 RFMIYVHTKMMIVDDE-----------YIIIGSANINQRSMD 683 (808)
T ss_pred ceeEEEeeeEEEEcCC-----------EEEEecccccccccc
Confidence 2244579999999999 999999999886554
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.38 Score=56.10 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCCccceeEEEecccC----------------CceEEEEEEe-CCCCC-CeeEEEEEeecccccCCCccceEEecccC-
Q 004579 6 QSNPRWYESFHIYCAHM----------------ASNIIFTVKD-DNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE- 66 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah~----------------~~~l~~~vkd-~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~- 66 (744)
+.||.|||.|.|.+.-. ..+|.+.+.+ .+.+. ++++|++.||++...--+-.+.||-|...
T Consensus 176 t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~ 255 (800)
T KOG2059|consen 176 TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP 255 (800)
T ss_pred ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCC
Confidence 89999999999987655 3456666666 44444 89999999999999866778999998753
Q ss_pred CCCCC---CCCceEEEEEEeeccc
Q 004579 67 DRNPI---SSGSKIHVKLQYFDVT 87 (744)
Q Consensus 67 ~~k~~---k~~~~IrV~lqf~p~~ 87 (744)
+|+.. -..+.+|+.+.++...
T Consensus 256 ~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 256 NGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred CcccCCCCCCccceeeeEEeeece
Confidence 34322 2346778887776443
|
|
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=89.96 E-value=1 Score=49.11 Aligned_cols=92 Identities=18% Similarity=0.353 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCceEEEEEecCCCCCCCCCchhHHHHHHHHhhhhhhHHHHHHHHHHcCCCCCCCCceEEeecCCccc
Q 004579 484 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREV 563 (744)
Q Consensus 484 ~la~~ia~a~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~Gv~~~p~~yl~~~~l~~~~~ 563 (744)
.++.++.+|++.|. +|.+++-...-.+- ..++ +| .+.|.++|+++ +|++
T Consensus 51 ~iv~aLi~AA~nGK--~Vtv~vELkARFDE-e~Ni----~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENGK--QVTVLVELKARFDE-ENNI----HW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSSTT-CCCC----CC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcCC--EEEEEEEEeccccH-HHHh----HH------------HhhHHhcCeEE-------EcCC-----
Confidence 36788889999995 56666665543332 2333 23 46789999976 3432
Q ss_pred ccCCccCCCCCCCCchhHHHHHhhcceeeEeeeeEEEEe-------ceEEEEcCccCCcccccCCCCcceEEEeecCC
Q 004579 564 KRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVD-------DEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 564 ~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVD-------D~~~iIGSANin~RS~~g~rDsEi~l~i~d~~ 634 (744)
. ..-||||+++|= -+|+-+|+-|.|...-..- |.+++..-++.
T Consensus 100 ------~--------------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~ 149 (352)
T PF13090_consen 100 ------P--------------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPE 149 (352)
T ss_dssp ------T--------------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HH
T ss_pred ------C--------------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHH
Confidence 1 147999999985 3899999999999987665 66777654443
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.2 Score=57.35 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=59.5
Q ss_pred CCCCCCCccceeEEEecccC----CceEEEEEEeCCCCC-CeeEEEEEeecccccCCCccceEEecccCCCCCCCCCceE
Q 004579 3 KKEQSNPRWYESFHIYCAHM----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 3 ~n~~~~P~Wne~F~~~~ah~----~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
+| +-.|..||+|||.+... .-+|.|.|||.=.-- +.++|.+.+++.++...----.|+||-..-.-.-++...+
T Consensus 1171 sn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLtiL 1249 (1283)
T KOG1011|consen 1171 SN-NWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLTIL 1249 (1283)
T ss_pred CC-CcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchhHH
Confidence 35 77899999999998774 468999999976554 6899999999999984334668999943211112233455
Q ss_pred EEEEEeecccc
Q 004579 78 HVKLQYFDVTK 88 (744)
Q Consensus 78 rV~lqf~p~~~ 88 (744)
|++-|+...+.
T Consensus 1250 RILSQRs~DeV 1260 (1283)
T KOG1011|consen 1250 RILSQRSNDEV 1260 (1283)
T ss_pred HHhhhccchHH
Confidence 66555544433
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=86.47 E-value=3.3 Score=39.22 Aligned_cols=77 Identities=16% Similarity=0.355 Sum_probs=58.1
Q ss_pred ccceeEEEeccc---------CCceEEEEEEeCCCCCC-eeEEEEEeecccccC--CCccceEEecccCCCCCCCCCceE
Q 004579 10 RWYESFHIYCAH---------MASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 10 ~Wne~F~~~~ah---------~~~~l~~~vkd~d~~~~-~~iG~~~ip~~~~~~--g~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
.|||.|.++|.= ..-.+.|+|...+.-|. ..+|.+.|-+.+..+ .+.+..-+++... .+..+.+
T Consensus 53 ~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L 128 (143)
T PF10358_consen 53 QWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATL 128 (143)
T ss_pred EEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEE
Confidence 699999998642 23578899988765454 599999999999996 4677778888643 2356888
Q ss_pred EEEEEeecccccc
Q 004579 78 HVKLQYFDVTKDR 90 (744)
Q Consensus 78 rV~lqf~p~~~~~ 90 (744)
++.++..+....+
T Consensus 129 ~isi~~~~~~~~~ 141 (143)
T PF10358_consen 129 SISISLSELREDP 141 (143)
T ss_pred EEEEEEEECccCC
Confidence 9988888776544
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.13 E-value=0.32 Score=56.67 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=42.8
Q ss_pred CCCCCCCCCccceeEEEeccc-----CCceEEEEEEeCCCCC-CeeEEEEEeeccccc
Q 004579 1 MLKKEQSNPRWYESFHIYCAH-----MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL 52 (744)
Q Consensus 1 vi~n~~~~P~Wne~F~~~~ah-----~~~~l~~~vkd~d~~~-~~~iG~~~ip~~~~~ 52 (744)
|.+. +.||+.+|+|.|.|.- -++-|.|||||.|.+. .|+=|+|++.+..|.
T Consensus 992 V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 992 VVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred hhhc-cccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3455 8999999999997543 3678999999999887 699999999988874
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=82.02 E-value=4 Score=40.77 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCCccceeEEEeccc---CCceEEEEEEeCCCCC----CeeEEEEEeecccccCCCc
Q 004579 6 QSNPRWYESFHIYCAH---MASNIIFTVKDDNPIG----ATLIGRAYVPVEEVLGGEE 56 (744)
Q Consensus 6 ~~~P~Wne~F~~~~ah---~~~~l~~~vkd~d~~~----~~~iG~~~ip~~~~~~g~~ 56 (744)
..+|.|||+|.|.+.= ...+|.|++.+-..-. +..||-|.+|+-+ .|.+
T Consensus 69 ~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~~ 124 (184)
T PF14429_consen 69 NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGTI 124 (184)
T ss_dssp -SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS-B
T ss_pred CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCeE
Confidence 6899999999987654 3589999998866432 2699999999887 6764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 744 | |||
| 1v0w_A | 506 | Phospholipase D; hydrolase, substrate SOAK, dibuty | 9e-17 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 6e-08 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 6e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 4e-07 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 8e-06 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 1e-05 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 2e-05 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 2e-05 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 5e-05 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 6e-05 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 1e-04 | |
| 3hsi_A | 458 | Phosphatidylserine synthase; CDP- diacylglycerol-- | 2e-04 | |
| 1byr_A | 155 | Protein (endonuclease); phosphodiesterase,; 2.00A | 3e-04 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 7e-04 |
| >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 9e-17
Identities = 73/498 (14%), Positives = 123/498 (24%), Gaps = 128/498 (25%)
Query: 148 EDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDI--MLGELLKKKASEG--VRV 203
+ + I NA + I S P G + LK+ A++G ++V
Sbjct: 69 AKMTENIGNATRTVDI---STLAPF----------PNGAFQDAIVAGLKESAAKGNKLKV 115
Query: 204 CMLVWDDRTSVSLLKKDGLMATHDEETEKFFQ-GTDVHCILCPRNPDDGGSFIQDIQISA 262
+LV + DE T K + ++ + +A
Sbjct: 116 RILV-GAAPVYHMN--VIPSKYRDELTAKLGKAAENITLNVASMTT----------SKTA 162
Query: 263 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQ 322
+H KI+VVD + GGI+ Y
Sbjct: 163 FSWNHSKILVVD-----------GQSALTGGINSWKDDY--------------------- 190
Query: 323 PNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIII 382
P D+ L GP A + W +
Sbjct: 191 ----------LDTTHPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWFAASGN 240
Query: 383 PPSPVMYP------DDHDTWNVQLF---------RSIDGGAAFGFPETPEDAARAGLVSG 427
T NV + + +D + F + +
Sbjct: 241 AGCMPTMHKDTNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLH 300
Query: 428 KDNIIDRSI------QDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLI 481
+ DR + A + AK I I Q + L
Sbjct: 301 DNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNAT-------------CPPLPRY 347
Query: 482 PKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALR 541
L + +K+ AG + V IVV + + D +
Sbjct: 348 DIRLYDALAAKMAAGVK--VRIVVSDPANRGAVGSGGYSQIKSLSEISDTL--------- 396
Query: 542 AKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIV 601
RN L G + K + S + + + H K++ V
Sbjct: 397 --------RNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQ--HHKLVSV 446
Query: 602 DDEYIIIGSANINQRSME 619
D IGS N+ ++
Sbjct: 447 DSSTFYIGSKNLYPSWLQ 464
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGAT-LIGRAYVPVEEVLGGEEVDKWVEILDE 66
NP W + F + + TV D++ +G+ +P+ + G+ + ++
Sbjct: 57 NPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNK 114
Query: 67 DRNPISSGSKIHVKLQYFD 85
D G I++++
Sbjct: 115 DLEQAFKGV-IYLEMDLIY 132
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 3 KKEQSNPRWYESFHIYCAHMASNII-FTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWV 61
NP W E+F N++ T+ D N + +G A V + GE+ +
Sbjct: 48 FNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPF 107
Query: 62 EILDEDRNPISSGSKIHVKLQ 82
N ++ + + L+
Sbjct: 108 IF-----NQVTEM-VLEMSLE 122
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 98/658 (14%), Positives = 183/658 (27%), Gaps = 203/658 (30%)
Query: 50 EVLGGEEVDKWVEILDEDRNPISSGSKIHVKL--------QYF---DVTKDRSW-ARGIR 97
+L EE+D I+ ++ +S ++ L Q F + + + I+
Sbjct: 44 SILSKEEID---HIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 98 S-AKYPGVPFTFYPQRKGCKVSLYQDAHV-PDNFVPEIPLAGGKYYEPHRCWEDIFDAIT 155
+ + P + Y + + LY D V V + +P+ + A+
Sbjct: 100 TEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRL--------QPY---LKLRQALL 145
Query: 156 NARHMIYIT-------GWSVYTEISLVRDSR-RPKPGGDIM---LGELLKKKASEGV--- 201
R + G + + + + + K I L + E V
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLK---NCNSPETVLEM 201
Query: 202 --RVCMLVWDDRTSVSLLKKDGLMATHDEETEK--FFQGTD-VHC--ILCPRNPDDGGSF 254
++ + + TS S + + H + E + +C +L +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----LN---- 252
Query: 255 IQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLF-RTLD 313
+Q+ + F KI++ D + + SL + LD
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 314 TAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL---------EGPIAWDVLFNFEQRWRK 364
D PRE + R +G WD W+
Sbjct: 313 CRPQDL---------------PREV-LTTNPRRLSIIAESIRDGLATWD-------NWKH 349
Query: 365 QGGKDVLVHLRELGDIIIPPS-PVMYPDDHDTWNVQLFR--SIDGGAAFGFPE------- 414
+ II S V+ P ++ ++F S+ FP
Sbjct: 350 VNCDKL--------TTIIESSLNVLEPAEYR----KMFDRLSV-------FPPSAHIPTI 390
Query: 415 ---------TPEDA-------ARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIE---- 454
D + LV + SI Y+ + +N +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 455 NQYFLGSSFAWSADGIKPEEIN------ALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 508
+ Y + +F D I P HL IE ER T ++
Sbjct: 451 DHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHL----------KNIEHPERMT------LF 493
Query: 509 PEGFPESGSVQAILD--WQRRTMDMMYKDVVQALRAKG----IMEDPRNYLTFFCLGNRE 562
F LD + + + + A A G ++ + Y + C
Sbjct: 494 RMVF---------LDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYIC----- 535
Query: 563 VKRSGEYEPAERPEDDSDYLRAQEAR----RFMIYVHAKMMIVDDEYIIIGSANINQR 616
+YE D+L E ++ + +M +DE I + QR
Sbjct: 536 -DNDPKYE--RLVNAILDFLPKIEENLICSKYTDLLRIALM-AEDEAIFEEAHKQVQR 589
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 8 NPRWYESFHIYC----AHMASNIIFTVKDDNPIGAT-LIGRAYVPVEEVLGGEEVDKWVE 62
NP W E +S++ VKD IG LIG A V ++++ G + +
Sbjct: 50 NPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK 109
Query: 63 IL-DEDRNPISSGSKIHVKLQY 83
++ + +G+ I + + Y
Sbjct: 110 LISLLNEKGQDTGATIDLVIGY 131
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKWVEILDE 66
P W E+F + + + + D + +G A +P+E V + + +
Sbjct: 55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK 114
Query: 67 DRNPISSGSKIHVKLQYFD 85
D G I V L +
Sbjct: 115 DEEY--KGE-IWVALSFKP 130
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 3 KKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVL--GGEEVDK 59
K++ ++P W++ F I V D PIG + + EE+L G +
Sbjct: 57 KQKTNSPAWHDEFVTDV-CNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
Query: 60 WVEILDEDRNPISSGSKIHVKLQY 83
W+ + K++V +
Sbjct: 116 WI--------DLEPEGKVYVIIDL 131
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 3 KKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVL----GGEEV 57
K++ + P + E F ++ V + P+G + + +E+L +
Sbjct: 79 KQKTNKPTYNEEFCANV-TDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTF 137
Query: 58 DKWVEILDEDRNPISSGSKIHVKL 81
+ WV + K+ V +
Sbjct: 138 EGWV--------DLEPEGKVFVVI 153
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 3 KKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVL---GGEEVD 58
++P+W + + S + F V + + L+G A + + E L + +
Sbjct: 75 CNNTNSPKWKQPLTVI-VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEE 133
Query: 59 KWVEI-LDEDRNPISSGSKIHVKLQYFDV 86
V + L D+ P + + + L +
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSICLDGLQL 162
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-05
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 7 SNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE--VDKWVEIL 64
S P W + F + + V + I T++G ++P+ + E +W+ +
Sbjct: 44 SQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103
Query: 65 DE 66
+
Sbjct: 104 SQ 105
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 6e-05
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 7 SNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE--VDKWVEIL 64
S P W + F + + V + I T++G ++P+ + E +W+ +
Sbjct: 53 SQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 112
Query: 65 DE 66
+
Sbjct: 113 SQ 114
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGAT-LIGRAYVPVEEVLGGEEVDKWVEILDE 66
NP+W E ++F V D+N + +G+ VP+ + + +
Sbjct: 70 NPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 67 DR-NPISSGSK----IHVKLQY 83
+P S S+ + +K+ Y
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTY 151
|
| >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Length = 458 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 595 HAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYH 635
H K + VDD YI++ N+N R+ D E + Y P
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQQ 402
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 593 YVHAKMMIVDDEYIIIGSANINQRSMEGARDT 624
H K++IVD+ + GS N + + +
Sbjct: 92 IQHDKVIIVDNVTVETGSFNFTKAAETKNSEN 123
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGAT-LIGRAYVPVEEVLGGEEVDKWVEIL-D 65
NP+W E I+F V D+N + +G+ VP+ + + D
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKD 117
Query: 66 EDRNPISSGSK----IHVKLQY 83
+P S S+ + +K+ Y
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTY 139
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 744 | ||||
| d1v0wa1 | 258 | d.136.1.2 (A:6-263) Phospholipase D {Streptomyces | 3e-10 | |
| d1v0wa1 | 258 | d.136.1.2 (A:6-263) Phospholipase D {Streptomyces | 1e-05 | |
| d1v0wa2 | 246 | d.136.1.2 (A:264-514) Phospholipase D {Streptomyce | 1e-08 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 6e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-04 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-04 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-04 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 0.002 |
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 58.9 bits (142), Expect = 3e-10
Identities = 29/230 (12%), Positives = 53/230 (23%), Gaps = 65/230 (28%)
Query: 140 YYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE 199
R + + I NA + I+ + + + + LK+ A++
Sbjct: 59 RVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQD-----------AIVAGLKESAAK 107
Query: 200 GVRV-CMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDI 258
G ++ ++ + + S
Sbjct: 108 GNKLKVRILVGAAPVYHMNVIPSKYRDELTAK-----LGKAAENITLNVASMTTS----- 157
Query: 259 QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHD 318
+A +H KI+VVD + GGI+ Y H
Sbjct: 158 -KTAFSWNHSKILVVDG-----------QSALTGGINSWKDDYLDTTH------------ 193
Query: 319 DFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK 368
P D+ L GP A + W
Sbjct: 194 -------------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQN 224
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 45.1 bits (106), Expect = 1e-05
Identities = 32/246 (13%), Positives = 60/246 (24%), Gaps = 69/246 (28%)
Query: 392 DHDTWNVQLFRSIDGGAAFGFP---ETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAK 448
+ D W +DG AA +TP D + + + I A
Sbjct: 21 EGDVWERTSGNKLDGSAADPSDWLLQTPGCWGDDKCA---DRVGTKRLLAKMTENIGNAT 77
Query: 449 NFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 508
+ I + + + L G + V I+V
Sbjct: 78 RTVDISTLAPFPN------GAFQDAIVAGL-----------KESAAKGNKLKVRILVGAA 120
Query: 509 PEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGE 568
P M+++ L AK L
Sbjct: 121 PV----------------YHMNVIPSKYRDELTAKLGKAAENITLNVA------------ 152
Query: 569 YEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGA----RDT 624
++ + H+K+++VD + + G N + D
Sbjct: 153 --------------SMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDV 198
Query: 625 EIAMGG 630
++A+ G
Sbjct: 199 DLALTG 204
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 54.0 bits (129), Expect = 1e-08
Identities = 33/210 (15%), Positives = 56/210 (26%), Gaps = 38/210 (18%)
Query: 413 PETPEDAARAGLVSGKDNIIDRSIQ----DAYIHAIRRAKNFIYIENQYFLGSSFAWSAD 468
P + GL + D A + AK I I Q +
Sbjct: 28 PTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPR- 86
Query: 469 GIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRT 528
L + +K+ AG + V IVV G+V + Q ++
Sbjct: 87 ------------YDIRLYDALAAKMAAGVK--VRIVVSDPAN----RGAVGSGGYSQIKS 128
Query: 529 MDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEAR 588
+ + + L + + + P + D Y
Sbjct: 129 LSEISDTLRNRLAN----ITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPY------- 177
Query: 589 RFMIYVHAKMMIVDDEYIIIGSANINQRSM 618
H K++ VD IGS N+ +
Sbjct: 178 ----AQHHKLVSVDSSTFYIGSKNLYPSWL 203
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 4 KEQSNPRWYESFH-IYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVE 62
NP W E+F I + + + T+ D N + +G A V + GE+ +
Sbjct: 49 NNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 108
Query: 63 ILDEDRNPISSGSKIHVKLQY 83
N ++ + + L+
Sbjct: 109 F-----NQVTEM-VLEMSLEV 123
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 3 KKEQSNPRWYESFHIYCAH-MASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKW 60
NPRW F + + F V+D + IG++ +P + G +
Sbjct: 51 TNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RH 107
Query: 61 VEILDEDRNPISSGSKIHVKLQYFD 85
V +L ++ + S + + VK+ D
Sbjct: 108 VHLLSKNGDQHPSAT-LFVKISIQD 131
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 8 NPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVL-GGEEVDKWVEILD 65
P W E+F + + + + D + +G A +P+E V G ++
Sbjct: 55 TPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK 114
Query: 66 EDRNPISSGSKIHVKLQYF 84
++ G +I V L +
Sbjct: 115 DEE---YKG-EIWVALSFK 129
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 3 KKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVL--GGEEVDKW 60
S P W + F + + V + I T++G ++P+ + E +W
Sbjct: 37 AVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 96
Query: 61 VEILDEDRNPISSGSKI 77
L D I + S+I
Sbjct: 97 ---LTLDSQAIMADSEI 110
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.002
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKWVEIL 64
NP W + F + + TV D++ +G+ +P+ + G+ +
Sbjct: 48 NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLK 105
Query: 65 DEDRNPISSGSKIHVKLQY 83
++D G I++++
Sbjct: 106 NKDLEQAFKG-VIYLEMDL 123
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 744 | |||
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.97 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.83 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.71 | |
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.67 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.64 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.61 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.4 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.37 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.3 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.29 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.29 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.29 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.13 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.11 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.09 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.06 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.04 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 98.97 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.96 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.87 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 98.86 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 98.8 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 98.68 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 98.62 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 98.62 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.61 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 96.66 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 96.39 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 96.25 | |
| d1xdpa4 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 95.23 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 94.69 | |
| d2o8ra4 | 186 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 91.53 |
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.97 E-value=7.9e-32 Score=202.55 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCC
Q ss_conf 337999999998126389999952475047750899999994128999999964369--869999828875310101256
Q 004579 144 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEG--VRVCMLVWDDRTSVSLLKKDG 221 (744)
Q Consensus 144 ~~~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rG--V~VriLvwD~~~s~~~~~~~g 221 (744)
..++++|.++|.+|+++|+|+.|++.| ++. .+..|.++|++||+|| |+||||+ |..++.....
T Consensus 63 ~~~~~~~~~~I~~A~~~I~i~~~~~~p------d~~-----~~~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~~--- 127 (258)
T d1v0wa1 63 KRLLAKMTENIGNATRTVDISTLAPFP------NGA-----FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV--- 127 (258)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCC------CHH-----HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC---
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEECC------CCH-----HHHHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC---
T ss_conf 999999999999750399999989758------966-----9999999999998689976999984-7866544320---
Q ss_pred CCCCCCHHHHHHHCC----CCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 567894888987618----9938997489999999611210034333571008997399999997665347998552268
Q 004579 222 LMATHDEETEKFFQG----TDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLC 297 (744)
Q Consensus 222 ~~~t~~~~~~~~l~~----~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~ 297 (744)
....+++.|.. .++.+.+....+ ......+.+||+|++|||++ ++||||+||+
T Consensus 128 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~rnH~Ki~VVDg~-----------~a~vGG~Ni~ 184 (258)
T d1v0wa1 128 ----IPSKYRDELTAKLGKAAENITLNVASM--------TTSKTAFSWNHSKILVVDGQ-----------SALTGGINSW 184 (258)
T ss_dssp ----HHHHHHHHHHHHHGGGGGGEEEEEEEE--------CSBTTTTBCBCCCEEEETTT-----------EEEEESCCCC
T ss_pred ----CHHHHHHHHHHHCCCEEECCCCCCCCC--------CCCCCCCCCCCCEEEEECCC-----------EEEECCCCCC
T ss_conf ----169999999973052033243112344--------45566543466469998698-----------8997785167
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9877898866444566668899989999998767899998715423335182799999999999987249853
Q 004579 298 DGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDV 370 (744)
Q Consensus 298 ~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gpaa~dl~~~F~~rW~~~~~~~~ 370 (744)
++||+.. ..||||++++++||+|.+++..|.++|+.++++..
T Consensus 185 ~~~~~~~-------------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~~ 226 (258)
T d1v0wa1 185 KDDYLDT-------------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS 226 (258)
T ss_dssp HHHHTSS-------------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCC-------------------------------CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4213588-------------------------------99766657999888999999999999999858878
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.83 E-value=2e-20 Score=135.45 Aligned_cols=175 Identities=17% Similarity=0.062 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 59999999999950247999522345564455668998300210033469999999999881996199999249999999
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP 513 (744)
Q Consensus 434 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~~ 513 (744)
+....+++.+|++|+++|||++|||...+.. . ......++.+|+++++|| ++|+||++.......
T Consensus 53 ~~~e~a~~~lI~~A~~~I~I~~q~~~~~~~p---~----------~~~~~~l~~AL~~aa~RG--V~Vrvll~~~~~~~~ 117 (246)
T d1v0wa2 53 NPEESALRALVASAKGHIEISQQDLNATCPP---L----------PRYDIRLYDALAAKMAAG--VKVRIVVSDPANRGA 117 (246)
T ss_dssp CHHHHHHHHHHHTCSSEEEEEESCSSCCTTT---S----------CSCCHHHHHHHHHHHHTT--CEEEEEECCGGGCC-
T ss_pred CHHHHHHHHHHHHCCCEEEEEEEEECCCCCC---C----------CCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCC
T ss_conf 7689999999972372899998752466776---5----------665379999999999759--937999836775420
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 983268999988764332699999999986-99----9898783288432772112577667799999960689998620
Q 004579 514 ESGSVQAILDWQRRTMDMMYKDVVQALRAK-GI----MEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEAR 588 (744)
Q Consensus 514 ~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~-gi----~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~ 588 (744)
. +.-.....+.+......+++.+... +. .....+.+.++.+... . .+.. ..
T Consensus 118 ~----~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~---------~~ 173 (246)
T d1v0wa2 118 V----GSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSS---------P--NGKW---------AD 173 (246)
T ss_dssp ---------CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSS---------S--SSSC---------TT
T ss_pred C----CCCHHHHHHHHHHHCCHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECC---------C--CCCC---------CC
T ss_conf 1----123088999999816326420323444033320232345430243215---------6--7655---------67
Q ss_pred CEEEEEEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2016866559999212999717557756445899842189852687546778743209999999999951
Q 004579 589 RFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHL 658 (744)
Q Consensus 589 ~~~iyvHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~~~~~~~~~~~~~~~lR~~Lw~ehl 658 (744)
+..+++|+|+|||||++++|||+||+.||+ +|+++.+++|..... ....+-...|...-
T Consensus 174 ~~~~~lH~K~~VVD~~~~~VGS~Nl~p~~~-----~E~g~vi~~p~~a~~------l~~~~~~~~W~~s~ 232 (246)
T d1v0wa2 174 GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAAKQ------LDAKLLDPQWKYSQ 232 (246)
T ss_dssp SCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHHHH------HHHHTHHHHHHHHG
T ss_pred CCCCCCCEEEEEECCCEEEECCCCCCCCHH-----CCCCEEEECHHHHHH------HHHHHHHHHHHHCC
T ss_conf 765444104999859899971885896022-----017589948999999------99999999987633
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.71 E-value=5.7e-16 Score=109.23 Aligned_cols=158 Identities=19% Similarity=0.285 Sum_probs=98.3
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC--CCC
Q ss_conf 999999998126389999952475047750899999994128999999964369869999828875310101256--567
Q 004579 147 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG--LMA 224 (744)
Q Consensus 147 ~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g--~~~ 224 (744)
...+..+|.+|+++|+|+...+.+. ..|....+..+.++|.++++|||+||||+ +...........+ ...
T Consensus 56 e~a~~~lI~~A~~~I~I~~q~~~~~-------~~p~~~~~~~l~~AL~~aa~RGV~Vrvll-~~~~~~~~~~~~~~~~~~ 127 (246)
T d1v0wa2 56 ESALRALVASAKGHIEISQQDLNAT-------CPPLPRYDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYSQIK 127 (246)
T ss_dssp HHHHHHHHHTCSSEEEEEESCSSCC-------TTTSCSCCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CCCCS
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCC-------CCCCCCCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCHHHHHH
T ss_conf 9999999972372899998752466-------77656653799999999997599379998-367754201123088999
Q ss_pred C---CCHHHHHHH-------------CCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 8---948889876-------------189938997489999999611210034333571008997399999997665347
Q 004579 225 T---HDEETEKFF-------------QGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIM 288 (744)
Q Consensus 225 t---~~~~~~~~l-------------~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~v 288 (744)
. ...+...++ ...+.++..+...... . .......+.|.|++|||++ +
T Consensus 128 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~lH~K~~VVD~~-----------~ 190 (246)
T d1v0wa2 128 SLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNG--K----WADGHPYAQHHKLVSVDSS-----------T 190 (246)
T ss_dssp CTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSS--S----CTTSCCCCBCCEEEEETTT-----------E
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCC--C----CCCCCCCCCCEEEEEECCC-----------E
T ss_conf 999816326420323444033320232345430243215676--5----5677654441049998598-----------9
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHH-HHHHHH-HHHHHHHHHC
Q ss_conf 99855226898778988664445666688999899999987678999987154233351827-999999-9999998724
Q 004579 289 SFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLF-NFEQRWRKQG 366 (744)
Q Consensus 289 afvGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gpa-a~dl~~-~F~~rW~~~~ 366 (744)
+||||.||.. +| |+|..+.|++|. |.++.. .|...|+...
T Consensus 191 ~~VGS~Nl~p-~~-------------------------------------~~E~g~vi~~p~~a~~l~~~~~~~~W~~s~ 232 (246)
T d1v0wa2 191 FYIGSKNLYP-SW-------------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQ 232 (246)
T ss_dssp EEEESCCSSC-CC-------------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred EEECCCCCCC-CH-------------------------------------HCCCCEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 9971885896-02-------------------------------------201758994899999999999999987633
Q ss_pred C
Q ss_conf 9
Q 004579 367 G 367 (744)
Q Consensus 367 ~ 367 (744)
.
T Consensus 233 ~ 233 (246)
T d1v0wa2 233 E 233 (246)
T ss_dssp G
T ss_pred C
T ss_conf 0
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.67 E-value=3.2e-16 Score=110.71 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 15999999999995024799952234556445566899830021003346999999999988199619999924999999
Q 004579 433 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 512 (744)
Q Consensus 433 e~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~ 512 (744)
.+.+..+++++|++||++||||++||.+.. .++.+++.+|.+|+++|++|+|+|++...+.-.
T Consensus 62 ~~~~~~~~~~~I~~A~~~I~i~~~~~~pd~-----------------~~~~~i~~aL~~aA~rG~~V~VriL~d~~gs~~ 124 (258)
T d1v0wa1 62 TKRLLAKMTENIGNATRTVDISTLAPFPNG-----------------AFQDAIVAGLKESAAKGNKLKVRILVGAAPVYH 124 (258)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSCCCH-----------------HHHHHHHHHHHHHHHTTCCEEEEEEEECCC--C
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEECCCC-----------------HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 699999999999975039999998975896-----------------699999999999986899769999847866544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEE
Q ss_conf 99832689999887643326999999999869998987832884327721125776677999999606899986202016
Q 004579 513 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMI 592 (744)
Q Consensus 513 ~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~i 592 (744)
... ....+.+.|.+.+++.....+++.+.+... . +...
T Consensus 125 -~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~------------------~~~~ 162 (258)
T d1v0wa1 125 -MNV---------------IPSKYRDELTAKLGKAAENITLNVASMTTS--------K------------------TAFS 162 (258)
T ss_dssp -CCC---------------HHHHHHHHHHHHHGGGGGGEEEEEEEECSB--------T------------------TTTB
T ss_pred -CCC---------------CHHHHHHHHHHHCCCEEECCCCCCCCCCCC--------C------------------CCCC
T ss_conf -320---------------169999999973052033243112344455--------6------------------6543
Q ss_pred EEEEEEEEEECEEEEECCCCCCCCCCC
Q ss_conf 866559999212999717557756445
Q 004579 593 YVHAKMMIVDDEYIIIGSANINQRSME 619 (744)
Q Consensus 593 yvHSK~mIVDD~~~iIGSANiN~RSm~ 619 (744)
+.|+|+||||+++++|||.||.+..+.
T Consensus 163 rnH~Ki~VVDg~~a~vGG~Ni~~~~~~ 189 (258)
T d1v0wa1 163 WNHSKILVVDGQSALTGGINSWKDDYL 189 (258)
T ss_dssp CBCCCEEEETTTEEEEESCCCCHHHHT
T ss_pred CCCCEEEEECCCEEEECCCCCCCCCCC
T ss_conf 466469998698899778516742135
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.64 E-value=1.7e-15 Score=106.46 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 59999999999950247999522345564455668998300210033469999999999881996199999249999999
Q 004579 434 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP 513 (744)
Q Consensus 434 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~la~~i~~a~~~g~~~~V~IvlP~~peg~~ 513 (744)
.++.++++++|++|+++|+|+..+|.. .++..+|.+|.++| ++|+|++......
T Consensus 12 ~~~~~~i~~~I~~A~~~I~I~~~~~~~----------------------~~i~~aL~~a~~rG--V~Vril~~~~~~~-- 65 (152)
T d1byra_ 12 GSARVLVLSAIDSAKTSIRMMAYSFTA----------------------PDIMKALVAAKKRG--VDVKIVIDERGNT-- 65 (152)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC----------------------HHHHHHHHHHHHTT--CEEEEEEESTTCC--
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEEECC----------------------HHHHHHHHHHHHCC--CEEEEEEEEECCC--
T ss_conf 609999999998488699999975349----------------------89999999998649--8599999730234--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE
Q ss_conf 98326899998876433269999999998699989878328843277211257766779999996068999862020168
Q 004579 514 ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIY 593 (744)
Q Consensus 514 ~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~~~~~ey~~~~~p~~~~~~~~~~~~~~~~iy 593 (744)
... .......+...++.. + . ... ..+
T Consensus 66 --~~~--------------~~~~~~~~~~~~~~~----~--------------~-~~~-------------------~~~ 91 (152)
T d1byra_ 66 --GRA--------------SIAAMNYIANSGIPL----R--------------T-DSN-------------------FPI 91 (152)
T ss_dssp --SHH--------------HHHHHHHHHHTTCCE----E--------------E-ECS-------------------SSC
T ss_pred --CHH--------------HHHHHHHHHHCCCCC----C--------------C-CCC-------------------CCC
T ss_conf --400--------------399998765323542----2--------------3-454-------------------330
Q ss_pred EEEEEEEEECEEEEECCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 6655999921299971755775644589984218985268
Q 004579 594 VHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQP 633 (744)
Q Consensus 594 vHSK~mIVDD~~~iIGSANiN~RSm~g~rDsEi~i~i~d~ 633 (744)
.|+|+||||++++++||+||+.+|+..| .|..+.+.+.
T Consensus 92 ~H~K~~ivD~~~~~~GS~N~t~~~~~~n--~e~~~~i~~~ 129 (152)
T d1byra_ 92 QHDKVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNM 129 (152)
T ss_dssp CCCCEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESC
T ss_pred CCCCEEEECCCEEEECCCCCCHHHHHCC--CCCEEEEECC
T ss_conf 2242478647426742667886787348--7526999728
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=2.7e-15 Score=105.23 Aligned_cols=134 Identities=15% Similarity=0.213 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 37999999998126389999952475047750899999994128999999964369869999828875310101256567
Q 004579 145 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 224 (744)
Q Consensus 145 ~~~~~i~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~ 224 (744)
...+.+.++|.+|+++|+|+.+.++ ...+.++|+++++|||+||||+ |..+......
T Consensus 13 ~~~~~i~~~I~~A~~~I~I~~~~~~----------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~~------ 69 (152)
T d1byra_ 13 SARVLVLSAIDSAKTSIRMMAYSFT----------------APDIMKALVAAKKRGVDVKIVI-DERGNTGRAS------ 69 (152)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC----------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSHHH------
T ss_pred CHHHHHHHHHHHCCCEEEEEEEEEC----------------CHHHHHHHHHHHHCCCEEEEEE-EEECCCCHHH------
T ss_conf 0999999999848869999997534----------------9899999999986498599999-7302344003------
Q ss_pred CCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 89488898761899389974899999996112100343335710089973999999976653479985522689877898
Q 004579 225 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 304 (744)
Q Consensus 225 t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~Dt~ 304 (744)
......+...++.+.... ....+|.|++|||++ ++|+|+.|++...+.
T Consensus 70 ---~~~~~~~~~~~~~~~~~~----------------~~~~~H~K~~ivD~~-----------~~~~GS~N~t~~~~~-- 117 (152)
T d1byra_ 70 ---IAAMNYIANSGIPLRTDS----------------NFPIQHDKVIIVDNV-----------TVETGSFNFTKAAET-- 117 (152)
T ss_dssp ---HHHHHHHHHTTCCEEEEC----------------SSSCCCCCEEEETTT-----------EEEEESCCBSHHHHH--
T ss_pred ---HHHHHHHHHCCCCCCCCC----------------CCCCCCCCEEEECCC-----------EEEECCCCCCHHHHH--
T ss_conf ---999987653235422345----------------433022424786474-----------267426678867873--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC--HHHHHHHHHHHHHHHHHC
Q ss_conf 86644456666889998999999876789999871542333518--279999999999998724
Q 004579 305 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEG--PIAWDVLFNFEQRWRKQG 366 (744)
Q Consensus 305 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~G--paa~dl~~~F~~rW~~~~ 366 (744)
-.++..+.+.+ +++..+...|.+.|+.+.
T Consensus 118 ---------------------------------~n~e~~~~i~~~~~v~~~~~~~F~~~w~~~~ 148 (152)
T d1byra_ 118 ---------------------------------KNSENAVVIWNMPKLAESFLEHWQDRWNQGR 148 (152)
T ss_dssp ---------------------------------TSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ---------------------------------CCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf ---------------------------------4875269997289999999999999984087
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.40 E-value=1.9e-13 Score=94.32 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-CEEEEEEEEECCCCC-CCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf 9889999983001499960258740799999299999-705799975142212-78734428964259999778983399
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
++++.+.||+|||+|.|.+......|.|.|+|.|.++ +++||++.||+.+++ .+.....|+++. .++++ .++|+
T Consensus 48 ~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~-~~~~~---~G~i~ 123 (136)
T d1wfja_ 48 VAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEEY---KGEIW 123 (136)
T ss_dssp CCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTEE---EEEEE
T ss_pred EEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEHHHHCCCCCCCCEEEEEC-CCCCC---CEEEE
T ss_conf 996688728870699999738311579999995699999889999999387112698673787864-79945---78999
Q ss_pred EEEEEECCCCC
Q ss_conf 99986123343
Q 004579 79 VKLQYFDVTKD 89 (744)
Q Consensus 79 V~lqf~p~~~~ 89 (744)
+.+.|.|...+
T Consensus 124 l~l~~~p~~p~ 134 (136)
T d1wfja_ 124 VALSFKPSGPS 134 (136)
T ss_dssp EEEEEEECCSC
T ss_pred EEEEEEECCCC
T ss_conf 99999848989
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.7e-12 Score=88.84 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-CEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 98899999830014999602587-40799999299999705799975142212787344289642599997789833999
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~~-~~i~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+++| +.||+|||+|.|++.... ..|.|.|+|.|.+++++||++.|+++++..|+..+.||+|.. . ..+.+++
T Consensus 47 ~~~~-t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~-~-----~~g~i~~ 119 (126)
T d1rlwa_ 47 HFNN-DINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ-V-----TEMVLEM 119 (126)
T ss_dssp CCTT-CSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT-T-----EEEEEEE
T ss_pred ECCC-CCCCEECEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEEEHHHCCCCCEEEEEEECCC-C-----CEEEEEE
T ss_conf 0478-8650101145010458412717999998799789748999999888659983889998348-9-----8089999
Q ss_pred EEEEEC
Q ss_conf 998612
Q 004579 80 KLQYFD 85 (744)
Q Consensus 80 ~lqf~p 85 (744)
.+++.+
T Consensus 120 ~l~~~~ 125 (126)
T d1rlwa_ 120 SLEVAS 125 (126)
T ss_dssp EEECCC
T ss_pred EEEEEE
T ss_conf 999973
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.8e-12 Score=87.47 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 9889999983001499960258740799999299999-705799975142212787344289642599997789833999
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
|+++ +.||+|||+|.|++.++.+.|.|.|+|.|.++ +++||++.||++++..|+ ..||.|...+.+. +..+.|++
T Consensus 44 ~~~~-t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l 119 (126)
T d2ep6a1 44 TVYK-NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYL 119 (126)
T ss_dssp CCSS-CSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEE
T ss_pred EECC-CEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCCCCC--CEEEECCCCCCCC-CEEEEEEE
T ss_conf 4077-405789899999984367500899999369847625899999989988999--6499841548997-54299999
Q ss_pred EEEEE
Q ss_conf 99861
Q 004579 80 KLQYF 84 (744)
Q Consensus 80 ~lqf~ 84 (744)
.+++.
T Consensus 120 ~~~~i 124 (126)
T d2ep6a1 120 EMDLI 124 (126)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.29 E-value=6.4e-12 Score=85.37 Aligned_cols=77 Identities=21% Similarity=0.467 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-CEEEEEEEEECCCCCCC--CCCCEEEECCCCCCCCCCCCCEE
Q ss_conf 9889999983001499960258740799999299999-70579997514221278--73442896425999977898339
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG--EEVDKWVEILDEDRNPISSGSKI 77 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g--~~v~~w~~l~~~~~k~~k~~~~I 77 (744)
++++ +.||+|||+|.|++.+ ...|+|.|+|.|.++ +++||.+.|++++++.. ...+.||+|. +.+++
T Consensus 56 ~~~~-t~~P~Wne~f~f~v~~-~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v 125 (136)
T d1gmia_ 56 TKQK-TNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKV 125 (136)
T ss_dssp CCSS-CSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEE
T ss_pred EECC-CCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCCEEEEEEEEEHHHHHHCCCCCEEEEEECC--------CCCEE
T ss_conf 8849-8895396379999932-784599999966898740578999997995316896224899677--------88299
Q ss_pred EEEEEEECCC
Q ss_conf 9999861233
Q 004579 78 HVKLQYFDVT 87 (744)
Q Consensus 78 rV~lqf~p~~ 87 (744)
++.+++.+..
T Consensus 126 ~l~v~~~~~~ 135 (136)
T d1gmia_ 126 YVIIDLSGSS 135 (136)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEECC
T ss_conf 9999999079
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.3e-11 Score=83.53 Aligned_cols=60 Identities=18% Similarity=0.449 Sum_probs=53.8
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC-CC-CCCCEEEECCC
Q ss_conf 99983001499960258740799999299999705799975142212-78-73442896425
Q 004579 6 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVL-GG-EEVDKWVEILD 65 (744)
Q Consensus 6 ~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~~~~iG~~~ip~~~~~-~g-~~v~~w~~l~~ 65 (744)
+.||+|||+|.|++.++...|.|+|+|.|..++++||++.||++++. ++ ...+.||+|..
T Consensus 40 ~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 40 GSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp SSSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred CCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCCCCCCCCCEEEECCC
T ss_conf 89983899998851466525999999678767861499999943301478878885078886
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=8.3e-12 Score=84.71 Aligned_cols=79 Identities=20% Similarity=0.403 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCEEEEEECCCC-CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf 9889999983001499960258-740799999299999-70579997514221278734428964259999778983399
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 78 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~-~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~Ir 78 (744)
++++.+.||+|||+|.|.+..+ .+.|.|+|+|.|.++ +++||.+.||++++..|. +|++|.+..|++. ..+.|.
T Consensus 49 ~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~-~~~~L~ 124 (131)
T d1qasa2 49 VITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLF 124 (131)
T ss_dssp CCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEE
T ss_pred EEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCC---EEEECCCCCCCCC-CCCEEE
T ss_conf 896665796597799999776323258999998068889868899999976267877---8998989995998-877899
Q ss_pred EEEEE
Q ss_conf 99986
Q 004579 79 VKLQY 83 (744)
Q Consensus 79 V~lqf 83 (744)
|.+.+
T Consensus 125 v~i~~ 129 (131)
T d1qasa2 125 VKISI 129 (131)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=6.2e-11 Score=79.58 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCC--CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCC
Q ss_conf 9889999983001499960258--740799999299999-70579997514221278734428964259
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM--ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 66 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~--~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~ 66 (744)
|+++ +.||+|||+|.|++.+. ...|.|+|+|.|.++ +++||.+.|++.++..+ .++.||+|.+.
T Consensus 58 v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 124 (132)
T d1a25a_ 58 TIKC-SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 124 (132)
T ss_dssp CCSS-CSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred EECC-CCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCCCC-CCCEEEECCCC
T ss_conf 1658-8998455499999576456978769978067788896769999968994888-78828999788
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.4e-10 Score=77.41 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC-CEEEEEEEEECCCCC---CCCCCCEEEE--CCCCCCCCCCCC
Q ss_conf 9889999983001499960258740799999299999-705799975142212---7873442896--425999977898
Q 004579 1 MLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL---GGEEVDKWVE--ILDEDRNPISSG 74 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~---~g~~v~~w~~--l~~~~~k~~k~~ 74 (744)
|+++ +.||+|||.|.|++.. .+.|.|.|+|.|.++ +++||++.|++.+++ .|+..+.|++ +.+ ..++.+..
T Consensus 44 v~~~-t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~-~~~~~~~~ 120 (133)
T d2nq3a1 44 KCNN-TNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG-DKEPTETI 120 (133)
T ss_dssp CCSS-CSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE-SSCTTSEE
T ss_pred EEEE-CCCEEECCEEEEEEEE-CCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHCCCCEEEEEEEEECCC-CCCCCEEE
T ss_conf 9970-3627876567999980-2206999998268889946899999979934135995215999986578-88983278
Q ss_pred CEEEEEEEEEC
Q ss_conf 33999998612
Q 004579 75 SKIHVKLQYFD 85 (744)
Q Consensus 75 ~~IrV~lqf~p 85 (744)
+.|.|.+....
T Consensus 121 G~L~v~l~~~~ 131 (133)
T d2nq3a1 121 GDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEESEE
T ss_pred EEEEEEEEEEE
T ss_conf 99999994388
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=1.1e-10 Score=78.04 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 9889999983001499960258---740799999299999-705799975142212787344289642
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~ 64 (744)
+++| +.||+|||+|.|++... ...|.|.|+|.|.++ +++||.+.||++++..++..+.||+|.
T Consensus 75 ~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 75 VHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred EECC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEECHHCCCCCCCCCEEECC
T ss_conf 8656-668312231699998531588469999998389888967999999820334999970288388
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=2.3e-10 Score=76.24 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCC-----CCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 889999983001499960258740799999299999705799975142212-----787344289642599997789833
Q 004579 2 LKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVL-----GGEEVDKWVEILDEDRNPISSGSK 76 (744)
Q Consensus 2 i~n~~~nP~Wne~F~~~~ah~~~~i~~~vkd~d~~~~~~iG~~~ip~~~~~-----~g~~v~~w~~l~~~~~k~~k~~~~ 76 (744)
+++ +.||+|||+|.|.+.. .+.+.|.|+|.| ++++|.+.|++++|. .+...+.|++|. +.|.
T Consensus 47 ~kk-T~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gk 113 (123)
T d1bdya_ 47 KKP-TMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAK 113 (123)
T ss_dssp CSC-CBCCCTTCEEEEECCT-TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCE
T ss_pred ECC-CCCCCCCEEEEEEECC-CCEEEEEEEECC---CCCCCCCEEEHHHEEECCCCCCCCCCEEEECC--------CCEE
T ss_conf 679-7886346699999744-667999999864---35367517756662401136898633797088--------8889
Q ss_pred EEEEEEEEC
Q ss_conf 999998612
Q 004579 77 IHVKLQYFD 85 (744)
Q Consensus 77 IrV~lqf~p 85 (744)
|++.++|..
T Consensus 114 l~l~v~~f~ 122 (123)
T d1bdya_ 114 VLMCVQYFL 122 (123)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
T ss_conf 999999963
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=9.6e-11 Score=78.45 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCEEEEEEC-CC---CCCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCC
Q ss_conf 9889999983001499960-25---8740799999299999-705799975142212787344289642599
Q 004579 1 MLKKEQSNPRWYESFHIYC-AH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDED 67 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~-ah---~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~ 67 (744)
|++| +.||+|||+|.|.. .. ....|.|+|+|.|.++ +++||++.|++.++..++..+.||+|.+..
T Consensus 70 v~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 70 YVQK-SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp TTHH-HHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred CCCC-CCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEHHHCCCCCCCEEEEECCCCC
T ss_conf 7838-8883467899875223334677879999997058999814689999867757889860999793867
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.7e-10 Score=72.82 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 9889999983001499960258---740799999299999-7057999751422127873442896425
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~ 65 (744)
++++ +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.|++.++-.+...+.|++|..
T Consensus 65 v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 65 LKKR-QLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp CCCC-CSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred EECC-CCCCEEEEEEEEEEEEHHCCCEEEEEEEEEECCCCCCEEEEEEEEEHHHCCCCCCCEEEEECCC
T ss_conf 8777-8995381308998651016621899987420556631454599998577348988659695888
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=9.5e-10 Score=72.59 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCC-C-CCCCCEEEECCC
Q ss_conf 9889999983001499960258---740799999299999-705799975142212-7-873442896425
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-G-GEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~-~-g~~v~~w~~l~~ 65 (744)
|+++ +.||+|||+|.|.+... ...|.|+|+|.|.++ +++||++.|++...+ . ....+.||+|++
T Consensus 59 v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 59 VHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp CCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred EECC-CCCEEEEEEEEEEECHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHCCCCCCCEEEECCC
T ss_conf 4768-777065267889884577189869999987688999866899998761542027988868982216
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=3.9e-09 Score=68.99 Aligned_cols=64 Identities=25% Similarity=0.428 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCC----------C--CCCCCCEEEECC
Q ss_conf 9889999983001499960258---740799999299999-70579997514221----------2--787344289642
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEV----------L--GGEEVDKWVEIL 64 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~----------~--~g~~v~~w~~l~ 64 (744)
++++ +.||+|||+|.|++... ...|.|+|+|.|.++ +++||++.|++..+ + +++.+..||+|.
T Consensus 68 v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~ 146 (157)
T d1uowa_ 68 IKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (157)
T ss_dssp CCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred CCCC-CCCCCCCCEEEEEECHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 2368-889636776999960899376389999815698888846699998060088167789999858998300767489
Q ss_pred C
Q ss_conf 5
Q 004579 65 D 65 (744)
Q Consensus 65 ~ 65 (744)
.
T Consensus 147 ~ 147 (157)
T d1uowa_ 147 V 147 (157)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=4.2e-09 Score=68.79 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCCCC
Q ss_conf 9889999983001499960258---740799999299999-70579997514221278734428964259999
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
++++ +.||+|||+|.|.+... ...|.|+|+|.|.++ +++||++.|++... |+..+.|++++...+|
T Consensus 58 ~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~--~~~~~hW~~ll~~~~k 127 (138)
T d1w15a_ 58 VKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRR 127 (138)
T ss_dssp CCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHHSTTC
T ss_pred EECC-CCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHC--CCHHHHHHHHHHCCCC
T ss_conf 1889-99973774799982379927558999998679988897889999866008--8267889999868999
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.1e-09 Score=66.83 Aligned_cols=72 Identities=17% Similarity=0.367 Sum_probs=54.8
Q ss_pred CCCCCCCCCCEE-EEEE-CCC-CCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEE
Q ss_conf 899999830014-9996-025-8740799999299999705799975142212787344289642599997789833999
Q 004579 3 KKEQSNPRWYES-FHIY-CAH-MASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 79 (744)
Q Consensus 3 ~n~~~nP~Wne~-F~~~-~ah-~~~~i~~~vkd~d~~~~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~~k~~~~IrV 79 (744)
+| +.||+|||. |.+. +.. ..+-|.|+|+|+| +++||.+.||++.+..|- +++||.+..|++. ..+.+-+
T Consensus 45 ~n-~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l-~~~~L~v 116 (122)
T d2zkmx2 45 TN-SINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFI 116 (122)
T ss_dssp SC-CSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEE
T ss_pred CC-EECCEECCCEEEEEECCCCCCCEEEEEEECCC---CCEEEEEEEECCCCCCCC---EEEECCCCCCCCC-CCCEEEE
T ss_conf 87-36415806586988617774169999999999---999999998932176776---6999159992999-8866999
Q ss_pred EEE
Q ss_conf 998
Q 004579 80 KLQ 82 (744)
Q Consensus 80 ~lq 82 (744)
.++
T Consensus 117 ~i~ 119 (122)
T d2zkmx2 117 FLE 119 (122)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=4.6e-09 Score=68.56 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 9889999983001499960258---740799999299999-705799975142212787344289642599997
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 70 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k~ 70 (744)
|+++ +.||+|||+|.|++... ...|.|+|.|.|.++ +++||++.|++..+ ++..+.||++++..+++
T Consensus 58 v~~~-t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~~~~~ 128 (137)
T d2cm5a1 58 IKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKK 128 (137)
T ss_dssp CCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHCTTCC
T ss_pred EECC-CCCCCCCEEEEEEEEHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCC--CCCHHHHHHHHHCCCCE
T ss_conf 5718-99985664999996878856129999766179998887999987473004--73110231576297986
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.3e-08 Score=62.33 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCEEEEEEC-CC---CCCEEEEEEEECCCCC-CEEEEEEEEECCCCC-CCCCCCEEEECCC
Q ss_conf 9889999983001499960-25---8740799999299999-705799975142212-7873442896425
Q 004579 1 MLKKEQSNPRWYESFHIYC-AH---MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEILD 65 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~-ah---~~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~-~g~~v~~w~~l~~ 65 (744)
|+++ +.||+|||+|.|.. .. ....|.|+|+|.|.++ +++||++.||+.++. ....+..|..++.
T Consensus 64 v~~~-t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~ 133 (138)
T d1ugka_ 64 VLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp CCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EEEC-CCCCCEEEEEEEEEECHHHCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC
T ss_conf 4767-789744568999612889955655899999899988895789999983416577870999966167
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4.7e-08 Score=62.65 Aligned_cols=61 Identities=20% Similarity=0.449 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCEEEEEE-CCCC---CCEEEEEEEECCCCC---CEEEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 988999998300149996-0258---740799999299999---70579997514221278734428964
Q 004579 1 MLKKEQSNPRWYESFHIY-CAHM---ASNIIFTVKDDNPIG---ATLIGRAYVPVEEVLGGEEVDKWVEI 63 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~-~ah~---~~~i~~~vkd~d~~~---~~~iG~~~ip~~~~~~g~~v~~w~~l 63 (744)
++++ +.||+|||+|.|. +... ...|.|.|+|.|.++ +++||++.||+.++...+. ..||+|
T Consensus 57 ~~~~-t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 57 TVKK-TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp CCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EECC-CCCCEECCEEEEEEECHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEECHHCCCCCC-CEEEEC
T ss_conf 7868-9998985399996038666288879999998888889999069999998055088999-998959
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.61 E-value=5.5e-09 Score=68.12 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCCCC-CEEEEEEEEECCCCCCCCCCCEEEECCCCCCC
Q ss_conf 9889999983001499960258---740799999299999-70579997514221278734428964259999
Q 004579 1 MLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN 69 (744)
Q Consensus 1 vi~n~~~nP~Wne~F~~~~ah~---~~~i~~~vkd~d~~~-~~~iG~~~ip~~~~~~g~~v~~w~~l~~~~~k 69 (744)
++++ +.||+|||+|.|++... ...|.|.|+|.+.++ +++||++.|+++.+. ....+.|++++...++
T Consensus 63 ~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~~ 133 (145)
T d1dqva2 63 IKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPRK 133 (145)
T ss_dssp CCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSSS
T ss_pred EEEC-CCCCEECCEEEEEEEHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHCC-CHHHHHHHHHHHCCCC
T ss_conf 9948-877403306999984113687789999975699988967999998816719-5356779999868998
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=96.66 E-value=0.0068 Score=32.25 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCC-----CEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 999999998126-----389999952475047750899999994128999999964369869999828875310101256
Q 004579 147 WEDIFDAITNAR-----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG 221 (744)
Q Consensus 147 ~~~i~~aI~~Ak-----~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g 221 (744)
|+.+.+.+++|- ..|-|+-|.. . ....+.++|.+||+.|-+|-+++ .-. .+ |-
T Consensus 35 F~~vv~fl~eAA~DP~V~~Ik~TlYR~---------a------~~S~Ii~aLi~AA~nGK~Vtv~v-ELk-AR-FD---- 92 (188)
T d2o8ra3 35 YDYVVRLLMEAAISPDVSEIRLTQYRV---------A------ENSSIISALEAAAQSGKKVSVFV-ELK-AR-FD---- 92 (188)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEEESCC---------C------SCCHHHHHHHHHHHTTCEEEEEE-CCC-SC-C-----
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEEE---------C------CCCHHHHHHHHHHHCCCEEEEEE-ECH-HH-HH----
T ss_conf 379999999985699822887789872---------6------97469999999997698799998-312-10-03----
Q ss_pred CCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 56789488898761899389974899999996112100343335710089973999999976653479985522689877
Q 004579 222 LMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 222 ~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~ 301 (744)
...+-++.+.|+.+||+|..-- ...--|.|+++|-.+..+| ...+-.+++|.=|....
T Consensus 93 --Ee~NI~wa~~Le~aGv~ViyG~----------------~glKvHaK~~lI~R~e~~g--~~~~~Y~hlgTGNyn~~-- 150 (188)
T d2o8ra3 93 --EENNLRLSERMRRSGIRIVYSM----------------PGLKVHAKTALILYHTPAG--ERPQGIALLSTGNFNET-- 150 (188)
T ss_dssp -----CHHHHHHHHHHTCEEEECC----------------TTCCBCCCEEEEEECCCSS--SCCCEEEEEESSCSSCC--
T ss_pred --HHHHHHHHHHHHHCCEEEEECC----------------CCHHHCCEEEEEEEEECCC--CCCCCEEEECCCCCCCC--
T ss_conf --8877777646776693996084----------------6300022245899997276--56310799577881800--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECH-HHHHHHHHHHH
Q ss_conf 898866444566668899989999998767899998715423335182-79999999999
Q 004579 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQ 360 (744)
Q Consensus 302 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gp-aa~dl~~~F~~ 360 (744)
. -.-+-|..+.-.-| ...|+...|..
T Consensus 151 --------------------------------T-Ar~YtD~~l~Ta~~~i~~Dv~~~F~~ 177 (188)
T d2o8ra3 151 --------------------------------T-ARIYSDTTLMTANTDIVHDVYRLFRI 177 (188)
T ss_dssp --------------------------------C-SSCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred --------------------------------C-HHHEEEEEEECCCHHHHHHHHHHHHH
T ss_conf --------------------------------0-00203202222788899999999998
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.02 Score=29.49 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=85.8
Q ss_pred HHHHHHHHHHCC-----CEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 999999998126-----389999952475047750899999994128999999964369869999828875310101256
Q 004579 147 WEDIFDAITNAR-----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG 221 (744)
Q Consensus 147 ~~~i~~aI~~Ak-----~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g 221 (744)
|+.+.+.+++|- ..|-|+-|... ....+.++|.+||+.|-+|-+++ .-. .+ |-.
T Consensus 36 F~~vv~fl~eAA~DP~V~~Ik~TlYR~a---------------~~S~Ii~aLi~Aa~nGK~Vtv~v-ELk-AR-FDE--- 94 (187)
T d1xdpa3 36 FEHVLELLRQASFDPSVLAIKINIYRVA---------------KDSRIIDSMIHAAHNGKKVTVVV-ELQ-AR-FDE--- 94 (187)
T ss_dssp THHHHHHHHHHHHCTTEEEEEEEESSCC---------------TTCHHHHHHHHHHHTTCEEEEEE-CTT-CS-STT---
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEC---------------CCCCHHHHHHHHHHCCCEEEEEE-ECH-HC-CCH---
T ss_conf 1689999999846998418878899716---------------98637999999997699899998-220-00-048---
Q ss_pred CCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 56789488898761899389974899999996112100343335710089973999999976653479985522689877
Q 004579 222 LMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 222 ~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~ 301 (744)
..+-++.+.|+.+||+|..-- ...--|.|+++|-.+..+ +-+-.+++|.=|....
T Consensus 95 ---e~NI~wa~~Le~aGv~ViyG~----------------~glKvHaK~~lV~R~e~~----~~~~Y~higTGNyn~~-- 149 (187)
T d1xdpa3 95 ---EANIHWAKRLTEAGVHVIFSA----------------PGLKIHAKLFLISRKENG----EVVRYAHIGTGNFNEK-- 149 (187)
T ss_dssp ---TTTTTTTHHHHHHTCEEEECC----------------TTCEECCEEEEEEEEETT----EEEEEEEEESSCSCTT--
T ss_pred ---HHHHHHHHHHHHCCCEEECCC----------------CCCEEEEEEEEEEEECCC----CEEEEEEECCCCCCCC--
T ss_conf ---888999999997799997374----------------530102178999998289----5899999668784800--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECH-HHHHHHHHHHH
Q ss_conf 898866444566668899989999998767899998715423335182-79999999999
Q 004579 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQ 360 (744)
Q Consensus 302 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gp-aa~dl~~~F~~ 360 (744)
. -.-+-|+.+.-.-| ...|+...|..
T Consensus 150 --------------------------------T-AriYtD~~l~T~~~~i~~D~~~~F~~ 176 (187)
T d1xdpa3 150 --------------------------------T-ARLYTDYSLLTADARITNEVRRVFNF 176 (187)
T ss_dssp --------------------------------G-GGTEEEEEEEECCHHHHHHHHHHHHH
T ss_pred --------------------------------C-HHHEEEEEEECCCHHHHHHHHHHHHH
T ss_conf --------------------------------0-00103302232798899999999997
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.019 Score=29.61 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
Q ss_conf 99999999988199619999924999999998326899998876433269999999998699989878328843277211
Q 004579 484 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREV 563 (744)
Q Consensus 484 ~la~~i~~a~~~g~~~~V~IvlP~~peg~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~ 563 (744)
.++.++.+|++.|.. |.+++-...-.+ +..++ . +.+.|+++|+++ .|++
T Consensus 67 ~Ii~aLi~Aa~nGK~--Vtv~vELkARFD-Ee~NI----~------------wa~~Le~aGv~V-------iyG~----- 115 (187)
T d1xdpa3 67 RIIDSMIHAAHNGKK--VTVVVELQARFD-EEANI----H------------WAKRLTEAGVHV-------IFSA----- 115 (187)
T ss_dssp HHHHHHHHHHHTTCE--EEEEECTTCSST-TTTTT----T------------TTHHHHHHTCEE-------EECC-----
T ss_pred CHHHHHHHHHHCCCE--EEEEEECHHCCC-HHHHH----H------------HHHHHHHCCCEE-------ECCC-----
T ss_conf 379999999976998--999982200004-88889----9------------999999779999-------7374-----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEEC-------EEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 2577667799999960689998620201686655999921-------2999717557756445899842189852687
Q 004579 564 KRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVDD-------EYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 564 ~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD-------~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~ 634 (744)
. ..-+|||+++|-- +|+-||+.|.|...-..- |.+++..-++.
T Consensus 116 ------~--------------------glKvHaK~~lV~R~e~~~~~~Y~higTGNyn~~TAriY--tD~~l~T~~~~ 165 (187)
T d1xdpa3 116 ------P--------------------GLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLY--TDYSLLTADAR 165 (187)
T ss_dssp ------T--------------------TCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTE--EEEEEEECCHH
T ss_pred ------C--------------------CCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHE--EEEEEECCCHH
T ss_conf ------5--------------------30102178999998289589999966878480000010--33022327988
|
| >d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.027 Score=28.70 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEC-CCCCCCCCCCEEEECCCCCC
Q ss_conf 12899999996436986999982887531010125656789488898761899389974-89999999611210034333
Q 004579 186 DIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILC-PRNPDDGGSFIQDIQISAMF 264 (744)
Q Consensus 186 ~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~t~~~~~~~~l~~~gV~v~~~-~r~p~~~~~~~~~~~~~~~~ 264 (744)
+..+.++|-+|++.||+|.++| ...-+. ..|+.+.+ .+|+|+-. .| |
T Consensus 41 D~~~I~~Ly~AS~aGV~I~LiV-RGiC~L----~pgi~g~S----------enI~V~SivgR-----------------f 88 (187)
T d1xdpa4 41 DKGLVDRLYAASSSGVPVNLLV-RGMCSL----IPNLEGIS----------DNIRAISIVDR-----------------Y 88 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEE-SSCBCB----CTTCTTTS----------TTEEEEEECSS-----------------S
T ss_pred CHHHHHHHHHHHCCCCEEEEEE-CCCCEE----CCCCCCCC----------CCEEEEEECCC-----------------H
T ss_conf 9899999999976898589998-465300----14467876----------86799994612-----------------4
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 57100899739999999766534799855226898778988664445666688999899999987678999987154233
Q 004579 265 THHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHS 344 (744)
Q Consensus 265 ~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ 344 (744)
=-|..+...-+. .....|+|+.|+-..-.| --.++.+
T Consensus 89 LEHsRi~~F~n~--------g~~~~yi~SADwM~RNL~-----------------------------------rRVEv~~ 125 (187)
T d1xdpa4 89 LEHDRVYIFENG--------GDKKVYLSSADWMTRNID-----------------------------------YRIEVAT 125 (187)
T ss_dssp EECCCEEEECGG--------GSCEEEEESCCBSHHHHH-----------------------------------SEEEEEE
T ss_pred HCCCCEEEEECC--------CCCCEEECCCCHHHHHHH-----------------------------------HHHHEEE
T ss_conf 306738998459--------976265337012167786-----------------------------------2411466
Q ss_pred EEECHH-HHHHHHHHHHHHHHHC
Q ss_conf 351827-9999999999998724
Q 004579 345 RLEGPI-AWDVLFNFEQRWRKQG 366 (744)
Q Consensus 345 ri~Gpa-a~dl~~~F~~rW~~~~ 366 (744)
-|..|. ...+...|...|..-.
T Consensus 126 PI~d~~~k~~i~~il~~~L~Dn~ 148 (187)
T d1xdpa4 126 PLLDPRLKQRVLDIIDILFSDTV 148 (187)
T ss_dssp ECCSHHHHHHHHHHHHHHHTCCS
T ss_pred EECCHHHHHHHHHHHHHHHHHHH
T ss_conf 72798999999999999842168
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=94.69 E-value=0.089 Score=25.69 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
Q ss_conf 99999999988199619999924999999998326899998876433269999999998699989878328843277211
Q 004579 484 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREV 563 (744)
Q Consensus 484 ~la~~i~~a~~~g~~~~V~IvlP~~peg~~~~~~~~~i~~~~~rt~~~~~~~i~~~L~~~gi~~~p~~yl~~~~l~~~~~ 563 (744)
.++.++.+|++.|.. |.+++-...-.+ +..++ . +.+.|+++|+++ .|++
T Consensus 66 ~Ii~aLi~AA~nGK~--Vtv~vELkARFD-Ee~NI----~------------wa~~Le~aGv~V-------iyG~----- 114 (188)
T d2o8ra3 66 SIISALEAAAQSGKK--VSVFVELKARFD-EENNL----R------------LSERMRRSGIRI-------VYSM----- 114 (188)
T ss_dssp HHHHHHHHHHHTTCE--EEEEECCCSCC-----CH----H------------HHHHHHHHTCEE-------EECC-----
T ss_pred HHHHHHHHHHHCCCE--EEEEEECHHHHH-HHHHH----H------------HHHHHHHCCEEE-------EECC-----
T ss_conf 699999999976987--999983121003-88777----7------------764677669399-------6084-----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEEEEE---------CEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 257766779999996068999862020168665599992---------12999717557756445899842189852687
Q 004579 564 KRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIVD---------DEYIIIGSANINQRSMEGARDTEIAMGGYQPY 634 (744)
Q Consensus 564 ~~~~ey~~~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVD---------D~~~iIGSANiN~RSm~g~rDsEi~i~i~d~~ 634 (744)
. ..-+|||+++|- .+|+-+|+-|.|...-..- |.+++..-++.
T Consensus 115 ------~--------------------glKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~~TAr~Y--tD~~l~Ta~~~ 166 (188)
T d2o8ra3 115 ------P--------------------GLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTD 166 (188)
T ss_dssp ------T--------------------TCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHH
T ss_pred ------C--------------------CHHHCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHE--EEEEEECCCHH
T ss_conf ------6--------------------3000222458999972765631079957788180000020--32022227888
|
| >d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=91.53 E-value=0.28 Score=22.73 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCC----CEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 7999999998126----389999952475047750899999994128999999964369869999828875310101256
Q 004579 146 CWEDIFDAITNAR----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG 221 (744)
Q Consensus 146 ~~~~i~~aI~~Ak----~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g 221 (744)
..+-+-..|..|+ -.|.+-.-++ .+..+.++|-+|++.||+|.++| ...-+.. .|
T Consensus 13 l~~~I~~Ei~~a~~G~~~~I~~KmNsL----------------~D~~iI~~Ly~AS~aGV~I~LiV-RGic~L~----pg 71 (186)
T d2o8ra4 13 ITNLIEREIENVKRGKRGYMLLKMNGL----------------QDKNVITQLYRASEAGVEIDLIV-RGICCLV----PD 71 (186)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEESCB----------------CCHHHHHHHHHHHHTTCEEEEEE-SSCBCSC----CS
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCC----------------CCHHHHHHHHHHHCCCCEEEEEE-CCHHEEC----CC
T ss_conf 999999999998779986899860346----------------59899999999851797289998-7554105----89
Q ss_pred CCCCCCHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 56789488898761899389974899999996112100343335710089973999999976653479985522689877
Q 004579 222 LMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 301 (744)
Q Consensus 222 ~~~t~~~~~~~~l~~~gV~v~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~~vafvGG~dl~~~R~ 301 (744)
+-+ ..+|+++-. -+ -+--|.++...-+... ...|+|+.|+-..-.
T Consensus 72 v~g-----------senI~V~Si---vg-------------RfLEHsRiy~F~n~g~--------~~~yigSAD~M~RNL 116 (186)
T d2o8ra4 72 MPQ-----------SRNIRVTRL---VD-------------MYLEHSRIWCFHNGGK--------EEVFISSADWMKRNL 116 (186)
T ss_dssp SGG-----------GTTEEEEEC---CS-------------SSEECCCEEEECGGGS--------CEEEEESCCBCHHHH
T ss_pred CCC-----------CCCEEEEEE---EC-------------CCCCCCEEEEEECCCC--------EEEEEECCCHHHHHH
T ss_conf 988-----------784799994---04-------------5653656999974995--------489984621103545
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHH-HHHHHHHHHHHHHHHCC
Q ss_conf 8988664445666688999899999987678999987154233351827-99999999999987249
Q 004579 302 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLFNFEQRWRKQGG 367 (744)
Q Consensus 302 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~~~~r~pWhDv~~ri~Gpa-a~dl~~~F~~rW~~~~~ 367 (744)
|- -.++.+-|.-|. ...+...|.-.|..-..
T Consensus 117 dr-----------------------------------RVEv~~PI~d~~~k~~l~~iL~~~l~Dn~k 148 (186)
T d2o8ra4 117 YN-----------------------------------RIETACPVLDPTLRREIIDILEIQLRDNIK 148 (186)
T ss_dssp HT-----------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCCSS
T ss_pred HC-----------------------------------CEEEEEEECCHHHHHHHHHHHHHHCCCCHH
T ss_conf 23-----------------------------------646999957989999999999988052476
|