Citrus Sinensis ID: 004594
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 743 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.742 | 0.592 | 0.565 | 1e-172 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.193 | 0.094 | 0.369 | 2e-17 | |
| Q15542 | 800 | Transcription initiation | yes | no | 0.187 | 0.173 | 0.342 | 5e-15 | |
| Q8C092 | 801 | Transcription initiation | yes | no | 0.187 | 0.173 | 0.335 | 1e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.166 | 0.073 | 0.333 | 4e-14 | |
| Q8W1K8 | 370 | Protein Mut11 OS=Chlamydo | N/A | no | 0.161 | 0.324 | 0.347 | 5e-14 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.164 | 0.089 | 0.346 | 1e-13 | |
| P0CS42 | 433 | Nuclear distribution prot | yes | no | 0.156 | 0.267 | 0.358 | 2e-13 | |
| P0CS43 | 433 | Nuclear distribution prot | N/A | no | 0.156 | 0.267 | 0.358 | 2e-13 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.173 | 0.102 | 0.312 | 3e-13 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 337/596 (56%), Positives = 425/596 (71%), Gaps = 44/596 (7%)
Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
RRD + N + + L PG + +K YE+R+K +P QR+SLD+A +K
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242
Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
R DN+ QLLDP+HA++LK+AA QP+GQ LH T G +S QVQ+R+QQ P S ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302
Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
+NP + PR A EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362
Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
QL + QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG +SVGD++
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420
Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
VGS++Q LPRGD D+L+K++ Q Q + L++
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480
Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
Q Q+SN + QQ+K+ GGS+TMDGS+SN+F+GN+Q KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540
Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
TANT GP+PSS S + HTPGDVIS P L H+G SSKS++MFG++G G+LTS NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600
Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
MDRFV+DGSLDDNVESFLS +D D RD V R +V KGFTFTE + AST+KV CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
DGK+LA+ GHDKKAVLW T++ K+TLEEHT ITD+RFSPS RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
D +N YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC V+K
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK 776
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590
D+ R E+ FQ TS V S F+PDG +LA+G DK LW S
Sbjct: 1221 DQTVRLWEINSSKCLCTFQ---GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
T + HT W+ V F+P S LA+ S D+TVR+W+ + L TF GH++ V S+ F P
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+L S ++ +R WSI++G C F
Sbjct: 1337 DGT-MLASGSDDQTVRLWSISSGECLYTF 1364
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
TFT V FSP G +GGHD+ A LW T+ + H +
Sbjct: 574 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 633
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
RF P+ + +AT SADRTVR+WD N + +R FTGH + SL F P+ L + +
Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 691
Query: 664 EIRYWSINNGSCAGVFK-----VCNL 684
+ W I +G G K VC+L
Sbjct: 692 RVLLWDIGHGLMVGELKGHTDTVCSL 717
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TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed. Homo sapiens (taxid: 9606) |
| >sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
TFT V FSP G +GGHD+ A LW T+ + H +
Sbjct: 575 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 634
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
R+ P+ + +AT SADRTVR+WD N + +R FTGH + SL F P+ L + +
Sbjct: 635 RYHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 692
Query: 664 EIRYWSINNGSCAGVFK-----VCNL 684
+ W I +G G K VC+L
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSL 718
|
TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed. Mus musculus (taxid: 10090) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
F+ + V S FSPDG+ +A+GG DK LW T T+ T+ H Q + +V FSP
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSP 1165
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
LA++S+D ++++WDT + L T TGHS V+++ F P + + ++ + ++
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQL-LMTLTGHSAGVITVRFSPDGQTIAAGSEDKT-VKL 1223
Query: 668 WSINNG 673
W +G
Sbjct: 1224 WHRQDG 1229
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + FSPDG LLA+G D+ LW + +TL H+ ++DV ++P+ LAT
Sbjct: 40 TKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLAT 99
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
++ D ++++WD E LRT TGH+ V +F + LL S + +R W + +G
Sbjct: 100 AADDHSLKLWDAET-GACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGR 158
Query: 675 C 675
C
Sbjct: 159 C 159
|
Part of a complex involved in 'Lys-4' histone H3 methylation. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S FSPDG+ +A+G D +W S T TLE H W+ V FSP R+A+ S+
Sbjct: 1138 VHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSS 1197
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D+T+++WDT + + +T GH V S+ F P + + +N+ I+ W +G+C
Sbjct: 1198 DKTIKIWDTASGTCT-QTLEGHGGWVQSVAFSPDGQRVASGSSDNT-IKIWDTASGTCTQ 1255
Query: 678 VFKV 681
V
Sbjct: 1256 TLNV 1259
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTF 228
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTF 228
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ +++V S FSP+G+++AT D+ +W + TL HT W+ D+ FSP
Sbjct: 1099 ILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDG 1158
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
LA++S D+TVR+WD N GH+ V S+ F P E ++ S + +R W+
Sbjct: 1159 KILASASHDQTVRIWDV-NTGKCHHICIGHTHLVSSVAFSPDGE-VVASGSQDQTVRIWN 1216
Query: 670 INNGSCAGVFK 680
+ G C + +
Sbjct: 1217 VKTGECLQILR 1227
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 743 | ||||||
| 297738887 | 871 | unnamed protein product [Vitis vinifera] | 0.909 | 0.776 | 0.693 | 0.0 | |
| 225445366 | 878 | PREDICTED: transcriptional corepressor L | 0.909 | 0.769 | 0.686 | 0.0 | |
| 359484630 | 883 | PREDICTED: transcriptional corepressor L | 0.905 | 0.762 | 0.678 | 0.0 | |
| 280967728 | 905 | LisH-SSDP-WD40 [Malus x domestica] | 0.896 | 0.735 | 0.689 | 0.0 | |
| 147784075 | 946 | hypothetical protein VITISV_002025 [Viti | 0.905 | 0.711 | 0.655 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.907 | 0.756 | 0.636 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.907 | 0.748 | 0.628 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.911 | 0.758 | 0.631 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.907 | 0.748 | 0.628 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.911 | 0.719 | 0.580 | 0.0 |
| >gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/720 (69%), Positives = 558/720 (77%), Gaps = 44/720 (6%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK+QQQQ Q + HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416
Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
SSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476
Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
NSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536
Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/727 (68%), Positives = 557/727 (76%), Gaps = 51/727 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237
Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297
Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
LDQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357
Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416
Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476
Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536
Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716
Query: 674 SCAGVFK 680
SC VFK
Sbjct: 717 SCTRVFK 723
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/735 (67%), Positives = 555/735 (75%), Gaps = 62/735 (8%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413
Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473
Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
SSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533
Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653
Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713
Query: 666 RYWSINNGSCAGVFK 680
RYWSI NGSC VFK
Sbjct: 714 RYWSIPNGSCTRVFK 728
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/705 (68%), Positives = 555/705 (78%), Gaps = 39/705 (5%)
Query: 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
D LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4 DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63
Query: 69 EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q Q QQ+ +Q+ Q+ Q+QQQQQ++
Sbjct: 64 EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123
Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
D TQ N T +D LR P A + TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182
Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
K RL DNM+QLLDPNH +++KAA G QP GQ LHGT G QQ SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242
Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
++K+E+ MNPRA EGSLIG HGSNQG N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299
Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
PYNQL QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG +SV V
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357
Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
VGS Q+ P LPRGD D+L+K +Q QQ Q YS HPLS Q SQNS+ LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417
Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
Q +KI+ GSM DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477
Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537
Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597
Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657
Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK 702
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/761 (65%), Positives = 557/761 (73%), Gaps = 88/761 (11%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
DIFIARTNEKHSE+AASYIE +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61 DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120
Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
Q QQ Q Q Q+ QQQQ Q ++ D TQ LN +G+ L
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180
Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
P A TKMYE+RLK LP QRD LDDA +K R DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239
Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
A+ QP GQTLHG G+S QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294
Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
VHGSNQG N+TLKGWPLTGLDQ RSG+LQQ KSL QP + QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354
Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
SPSA+DLE RKLRML NSRN L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413
Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
+Q QQ Q Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473
Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533
Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
L HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593
Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
SFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653
Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGH
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGH 713
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
ST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC VFK
Sbjct: 714 STNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 754
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/742 (63%), Positives = 541/742 (72%), Gaps = 68/742 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594
Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+ K++LEEH
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714
Query: 659 CDNNSEIRYWSINNGSCAGVFK 680
CD + EIRYW+I NGSCA VFK
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFK 736
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/740 (63%), Positives = 544/740 (73%), Gaps = 63/740 (8%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ +PQQ Q Q + Q Q+
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120
Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
QQQQ+ RD LN + + L PG A A TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180
Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
RLK LP QRDSLDDA K R +NM QLLDPNHA +LK+AA QPSGQ LHG G +S
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239
Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299
Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
RSGLLQQQK Q P++QLQ+ QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357
Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
RN+GL +DG SN VGD+VS VGS +Q P PRGD D+L+K++ Q Q Q
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417
Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
H LS+QQSQ SN + QQDK+ GG S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477
Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
RKQ SSSGPANSSGTANT GP+PSS S + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537
Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
DG G+LTS NQL D+DRFV+DGSLD+NVESFLS DD DPRD VGR +V
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597
Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
KGFTF++ + ASTSKV CHFS DGKLLA+GGHDKK VLW T+S K+TLEEH+ I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657
Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717
Query: 661 NNSEIRYWSINNGSCAGVFK 680
+ EIRYWSINNGSCA V K
Sbjct: 718 GDGEIRYWSINNGSCARVSK 737
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/793 (58%), Positives = 539/793 (67%), Gaps = 116/793 (14%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKARE-----------------------------QQQ 91
DIFIARTNEKHSE AASYIE+Q+IKARE QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 92 QQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
Q+H + QQ QQ QQ Q Q QQQQ RD T LN + + L P A A T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180
Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
KMYE+RLK P QRDSLDDA +K R +NM QLLDPNHA++LK+AA G QPSGQ LHGT
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239
Query: 210 -GVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
G+S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299
Query: 269 TGLDQFRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
TGL+Q RSGLLQQQK QP++QLQ+ QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357
Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
ML N+RN+GL +DG SN GD++S VGS + P PRGD D+L+K++
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417
Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKI-LAGGSMTMDGSMSNTFQGNDQ 421
Q Q H LS+QQSQ SN + QQDK+ GGS+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477
Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537
Query: 438 SGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
SGPANSSGTANT G S+PS+PSTHTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597
Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
S NQL D+DRFVDDGSLDDNVESFLS DD DPRD VGR +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ AS+SK+ CHFS DGKLLA+GGHDKKAV+W +S K+ LEEH+ ITDVRFS
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777
Query: 668 WSINNGSCAGVFK 680
WSINNGSC V K
Sbjct: 778 WSINNGSCVRVSK 790
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 743 | ||||||
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.160 | 0.206 | 0.398 | 7.3e-14 | |
| TAIR|locus:2140215 | 333 | WDR5b "AT4G02730" [Arabidopsis | 0.215 | 0.480 | 0.277 | 1.3e-13 | |
| ASPGD|ASPL0000031743 | 954 | AN8505 [Emericella nidulans (t | 0.166 | 0.129 | 0.380 | 2.8e-13 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.153 | 0.262 | 0.398 | 3.7e-13 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.156 | 0.346 | 0.322 | 4.1e-13 | |
| CGD|CAL0000165 | 798 | orf19.536 [Candida albicans (t | 0.154 | 0.144 | 0.358 | 4.5e-13 | |
| UNIPROTKB|H3BPK1 | 210 | KATNB1 "Katanin p80 WD40 repea | 0.179 | 0.633 | 0.340 | 1.9e-12 | |
| UNIPROTKB|F1S845 | 542 | TAF5 "Uncharacterized protein" | 0.161 | 0.221 | 0.362 | 2.5e-12 | |
| ZFIN|ZDB-GENE-031118-54 | 490 | poc1b "POC1 centriolar protein | 0.181 | 0.275 | 0.335 | 3e-12 | |
| UNIPROTKB|H3BPD8 | 208 | KATNB1 "Katanin p80 WD40 repea | 0.189 | 0.677 | 0.328 | 3.1e-12 |
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 49/123 (39%), Positives = 66/123 (53%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S FS D +LLA+ D +W T + +++ TLE H W+ V FS LA++S
Sbjct: 424 VRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSRLLASASD 483
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCA 676
DRTVR+WDTE + T GHS+ V S+ F H S+ LL S N+ +R W I S
Sbjct: 484 DRTVRIWDTEKGSHK-HTLEGHSSLVTSVSFSHDSR--LLASASNDQTVRIWDIEARSLQ 540
Query: 677 GVF 679
F
Sbjct: 541 HTF 543
|
|
| TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 45/162 (27%), Positives = 78/162 (48%)
Query: 526 DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585
+A+ G S V + + + T+ + FS DG LLA+ DK +LW
Sbjct: 14 NANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++++ E H+ I+D+ +S ++S D T+R+WD +P L+ GH+ V
Sbjct: 74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFC 133
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPI 687
++F+P +L+ S + IR W + G C + K + MPI
Sbjct: 134 VNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIKA-HSMPI 173
|
|
| ASPGD|ASPL0000031743 AN8505 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 48/126 (38%), Positives = 66/126 (52%)
Query: 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
Q + + V S FSPDG+LLA+G DK LW + +++ TL H+ W+ V FSP
Sbjct: 731 QTLEGHSGWVLSVAFSPDGRLLASGSFDKTVRLWDPATGSLQQTLRGHSNWVRSVAFSPD 790
Query: 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
LA+ S D+TVR+WD +T GHS TV S+ F P LL S + +R W
Sbjct: 791 GRLLASGSFDKTVRLWDPATGSLQ-QTLRGHSDTVRSVAFSPDGR-LLASGSFDKTVRLW 848
Query: 669 SINNGS 674
G+
Sbjct: 849 DPATGT 854
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S FSPDG+LLA+G +K LW + + +K TL H+ W+ + FSP LA+ S
Sbjct: 158 VLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLASGSN 217
Query: 618 DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
D T+++WD P SL+ T GHS + SL F P+ + LL S +++ I+ W GS
Sbjct: 218 DATIKLWDP--PSGSLKHTLEGHSNKIESLAFSPNGQ-LLASGSSDATIKLWDTATGS 272
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 38/118 (32%), Positives = 64/118 (54%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPDGK LA+ DK +W + TLE H + I+D+ +S + ++S
Sbjct: 49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
D+T+++WD E+ ++T GH V + F+P + +L+ S + +R W +N G C
Sbjct: 109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGEC 164
|
|
| CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 42/117 (35%), Positives = 64/117 (54%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD K L + DK LW +++T + + HTQ + DV+FSP T+S D+T R
Sbjct: 525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+W T++ Y LR F GH V ++FHP+ + + + R W ++ G+C VF
Sbjct: 585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKT-CRMWDVHTGNCVRVF 639
|
|
| UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 47/138 (34%), Positives = 62/138 (44%)
Query: 544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
T + Q I A S V S G+LLATGG D + LW +L HT +
Sbjct: 9 TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVES 68
Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
VR + + S ++RVWD E LRT GH + SLDFHP E + S +
Sbjct: 69 VRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDFHPYGE-FVASGSQD 126
Query: 663 SEIRYWSINNGSCAGVFK 680
+ I+ W I C VF+
Sbjct: 127 TNIKLWDIRRKGC--VFR 142
|
|
| UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 46/127 (36%), Positives = 64/127 (50%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSP G +GGHD+ A LW T+ + H + RF P+ + +AT SADRTVR
Sbjct: 353 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 412
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 680
+WD N + +R FTGH + SL F P+ L + + + W I +G G K
Sbjct: 413 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 470
Query: 681 ---VCNL 684
VC+L
Sbjct: 471 TDTVCSL 477
|
|
| ZFIN|ZDB-GENE-031118-54 poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 46/137 (33%), Positives = 66/137 (48%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A T+ V S HFS DG+ L T DK +W E +L HT W+ RFS
Sbjct: 94 ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFS 153
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A+ DRTVR+WDT + + FT + + +DF+ S + S +N+ I+
Sbjct: 154 PDGRLIASCGDDRTVRLWDTSSHQ-CINIFTDYGGSATFVDFNSSGTCIASSGADNT-IK 211
Query: 667 YWSINNGSCAGVFKVCN 683
W I +KV N
Sbjct: 212 IWDIRTNKLIQHYKVHN 228
|
|
| UNIPROTKB|H3BPD8 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 50/152 (32%), Positives = 67/152 (44%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588
RDR ++A V + I A S V S G+LLATGG D + LW
Sbjct: 5 RDRCAQAAAVAA------VEEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPN 58
Query: 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
+L HT + VR + + S ++RVWD E LRT GH + SLDF
Sbjct: 59 CIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI-LRTLMGHKANICSLDF 117
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
HP E + S ++ I+ W I C VF+
Sbjct: 118 HPYGE-FVASGSQDTNIKLWDIRRKGC--VFR 146
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 743 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-30 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-30 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-27 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-06 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 5e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-04 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 9e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 9e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.001 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.003 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.003 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.004 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V FSPDGKLLATG D +W E+ + TL+ HT + DV S +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
LA+ S+D+T+R+WD E + +RT TGH++ V S+ F P +L S + I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122
Query: 671 NNGSCAGVFK 680
G C +
Sbjct: 123 ETGKCLTTLR 132
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
TS V S FSPDG++L++ DK +W E+ +TL HT W+ V FSP + +A+
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
SS D T+++WD + T TGH+ V S+ F P E LL S + + I+ W ++ G
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGK 210
Query: 675 CAGVFKVCN 683
C G +
Sbjct: 211 CLGTLRGHE 219
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-27
Identities = 44/137 (32%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + T V S FSPDG +A+ D LW + +TL HT + V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
FSP +L +SS+D T+++WD L T GH V S+ F P LL S +
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDG 241
Query: 664 EIRYWSINNGSCAGVFK 680
IR W + G C
Sbjct: 242 TIRVWDLRTGECVQTLS 258
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + T +V S FSPDG+ L + D LW + TL H + V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
FSP LA+ S D T+RVWD + ++T +GH+ +V SL + P + L S +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKR-LASGSADG 283
Query: 664 EIRYWS 669
IR W
Sbjct: 284 TIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.7 bits (213), Expect = 9e-18
Identities = 44/120 (36%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
FSPDG LLA+G D LW S + TL H+ + V FSP LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
R+WD E S T GH V SL F P L+ ++ IR W + G +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
+ TL+ HT +T V FSP LAT S D T++VWD E + LRT GH+ V +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
L + + IR W + G C
Sbjct: 61 ADGTYLASGSSDKT-IRLWDLETGECVRTLT 90
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 2e-14
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
T + T V S FSPDG L+A+G D LW + ++STL H+ +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
FSP S LA+ S+D T+R+WD + LRT +GHS++V+S+ F P LL S +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304
Query: 662 NSEIRYWSINNGSC 675
+ +R W + G
Sbjct: 305 DGTVRLWDLETGKL 318
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 2e-14
Identities = 53/252 (21%), Positives = 79/252 (31%), Gaps = 11/252 (4%)
Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
S + +++ ++ SL S S
Sbjct: 13 SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66
Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
+ S FSPDG+LL +G D LW +KS H ++ + SP + +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
SS D TV++WD P +RT GHS +V SL F P + L + I+ W +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 672 NGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKD 731
G L + I L LS + S
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 732 SCCSHRELYLYT 743
S S L +
Sbjct: 247 SSFSPDGSLLAS 258
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.6 bits (153), Expect = 2e-10
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
+ V S FSPDG LL +GG D LW + TLE H+ + V FSP
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG 382
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
+++ S D TVR+WD LR GH++ V SLDF P L S +++ IR W
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGS-LLRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWD 440
Query: 670 INN 672
+
Sbjct: 441 LKT 443
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
S + TL+ HT +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-09
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
+ TL+ HT +T V FSP + LA+ S D TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (133), Expect = 5e-08
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S V S FSPDG+++++G D LW + ++ L+ HT +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 616 SADRTVRVWDTENPDYSL 633
S+D T+R+WD + S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
L+ HT I D++F+P S LA+ S D T+RVW+ + D S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
+D++P ++CS +S + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 1e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
+ L+ IYDYL+K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ + + T V S FSPDGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 1e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ T V S FSPDG LLA+G D +W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 88 EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
+Q Q Q Q Q QQ QQ Q QQ Q Q Q + Q L D R G
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684
Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
RD+L A
Sbjct: 685 GEAGEAA--------RDALGRA 698
|
Length = 820 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
I DV F+P +L T+S D T+ W T+N + GH+ V + FHPS
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK 680
++L S + + W + G V K
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIK 165
|
Length = 493 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 81 SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
SQ Q QQ QQ Q + Q + Q QQQQ+ Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 8e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
LRT GH+ V S+ F P +LL S ++ +R W
Sbjct: 4 LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
L+ I +YLL+ +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622
S D LLA+G D LW T++ I V+F R LA SAD V
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVY 643
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+D NP L T GHS TV + F S + S DN ++ W ++
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690
|
Length = 793 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
+ Q QQ QQ Q QQ QQ Q Q A++QQ +QR + G+ R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692
Query: 141 PGFAKA 146
+A
Sbjct: 693 DALGRA 698
|
Length = 820 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
+ + R NE E + + ++ R++ +Q +QQ Q+ ++ Q + +L Q A+ Q
Sbjct: 76 VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134
Query: 122 QQQRR 126
Q+Q
Sbjct: 135 QRQYL 139
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
R+ Q+Q Q + Q Q Q QQ Q Q++
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652
|
Length = 820 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.003
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L+T GH+ V S+ F P L S ++ I+ W
Sbjct: 5 LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
Q+ +QQ Q + Q Q QQ + QQ QQ Q Q
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 17/228 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
Q QQQ Q QQ QQL Q+ Q QQQ D+ + + G
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG----QQQQGQGGMQP 263
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKP--RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLH 206
+M +++ Q+ L + M Q+ + Q G
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 207 GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHG-----SNQGAGNV 261
G V Q V S QQ + + G+ H G +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 262 TLKGWPLTGLDQFRSGLLQQQK------SLTQPYNQLQLQQLMLQAQQ 303
G+ +Q G Q+ S P Q+Q Q M Q Q
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 59/309 (19%), Positives = 78/309 (25%), Gaps = 38/309 (12%)
Query: 193 AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 247
+ QP GQ S Q QS+ Q MN G G
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195
Query: 248 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 292
+ G G Q + L QQ+ Q Q
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255
Query: 293 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
Q Q M Q P + +L ML N M G G +
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313
Query: 345 VGSAMQIISPGLPRGDNDLL------IKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQD 398
+ G ++ +K + + QQ N QQQ
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373
Query: 399 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 457
G M QGN N + + + +SS P T + P P P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432
Query: 458 SSPSTHTPG 466
S PS PG
Sbjct: 433 SVPSPGGPG 441
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 17/223 (7%)
Query: 89 QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
QQ Q Q Q+P Q Q Q Q Q QQ Q G PG
Sbjct: 152 QQSSGQPQSQQPNQ-MGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPGGGG--- 206
Query: 149 TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP---SGQTL 205
++ + ++ +L + Q +D A +G Q G
Sbjct: 207 ---QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 206 HGTHGVSQQVQSRSQQPPLSTQEVKTEMNPT----MNPRAAGSEGSLIGVHGSNQGAGNV 261
G QV + Q P Q+ + M P M G G +G GA
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 262 TLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQN 304
+ + + L Q + L Q Q QQ Q N
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMK--LRNMRGQQQTQQQQQQQGGN 364
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 743 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.98 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.96 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.92 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.89 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.86 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.85 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.85 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.83 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.81 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.81 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.81 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.8 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.8 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.8 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.8 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.79 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.79 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.78 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.78 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.77 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.76 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.75 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.75 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.74 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.74 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.74 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.73 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.73 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.72 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.7 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.68 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.68 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.67 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.67 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.65 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.65 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.64 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.63 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.63 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.63 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.62 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.6 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.59 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.59 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.58 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.58 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.58 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.56 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.56 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.56 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.56 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.55 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.55 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.54 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.54 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.52 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.5 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.5 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.49 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.49 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.48 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.46 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.46 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.45 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.43 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.4 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.38 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.38 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.38 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.37 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.37 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.36 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.34 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.33 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.31 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.31 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.31 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.27 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.26 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.24 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.22 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.22 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.21 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.2 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.15 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.13 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.11 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.11 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.11 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.11 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.06 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.03 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.03 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.0 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.99 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.96 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.95 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.95 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.94 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.79 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.78 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.77 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.77 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.75 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.73 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.72 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.71 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.68 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.59 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.53 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.52 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.51 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.47 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.45 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.44 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.42 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.39 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.35 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.34 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.32 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.29 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.26 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.24 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.19 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.17 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.11 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.07 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.06 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.06 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.01 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.01 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.99 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.97 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.93 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.9 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.8 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.79 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.76 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.73 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.73 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.57 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.57 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.53 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.32 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.31 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.3 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.2 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.18 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.12 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.1 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.02 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.02 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.01 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.99 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.96 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.95 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.95 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.87 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.82 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.72 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.71 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.64 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.56 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.31 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.24 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.18 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.16 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.09 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.01 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.87 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.82 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.59 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.51 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.49 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.36 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.15 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.11 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.1 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.82 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.8 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.79 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.76 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.69 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.47 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.45 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.32 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.25 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.2 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.89 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.83 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.62 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.6 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.54 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.34 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.32 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 93.09 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.83 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.64 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.51 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.48 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.32 | |
| PRK10115 | 686 | protease 2; Provisional | 91.97 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 91.63 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 91.35 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.14 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.14 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 90.84 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 90.66 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.53 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.24 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.84 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 89.79 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 89.14 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.09 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.53 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.49 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.12 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.76 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.75 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.37 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 87.28 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 87.07 | |
| PRK10350 | 145 | hypothetical protein; Provisional | 87.05 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.96 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.92 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.61 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 86.36 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.91 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 85.72 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.57 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 85.56 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 84.6 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 84.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 84.11 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.09 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.43 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 83.39 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 83.13 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.08 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 82.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 82.1 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 81.95 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 81.79 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 81.58 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 81.42 | |
| PRK10115 | 686 | protease 2; Provisional | 81.4 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.28 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 81.04 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 80.96 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.83 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.54 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=285.64 Aligned_cols=228 Identities=21% Similarity=0.271 Sum_probs=201.7
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
..+...+..+.|+|.. .+.-+++++.|++|++|.. ....++..+.+|.
T Consensus 214 ~gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~-------------------~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKL-------------------SQETPLQDLEGHL 261 (459)
T ss_pred eccccceeeEEEccCC-------------CccceeeeccCCceeeecc-------------------CCCcchhhhhcch
Confidence 3445566677777752 1257899999999999943 2236788899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
..|..++|+|+|++|+|+|.|.+-++||++++..+...+||...|.+|+|++||.+++||+.|..-||||+++++. +..
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-im~ 340 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-IMF 340 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-EEE
Confidence 9999999999999999999999999999999998888899999999999999999999999999999999999774 999
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecc-
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIF- 709 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~L~sgs~Dg~v~vh~~~- 709 (743)
+.+|...|.+|+|+|+| +.+||||.|++++|||++...++..+.+|.. +.|.| .|++|++++.|+++++|...
T Consensus 341 L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred ecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 99999999999999997 5788999999999999999999999998854 77887 89999999999999998643
Q ss_pred -----------cceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 710 -----------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 710 -----------v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.+++++....++..++|+++|.+|++|.
T Consensus 420 ~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 3567777787789999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-32 Score=281.91 Aligned_cols=229 Identities=24% Similarity=0.282 Sum_probs=202.2
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004594 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
.+.+.+.++.+.|+.|+ ..+++|||+|.+++|..+. ...+.+|++|
T Consensus 171 Q~gd~rPis~~~fS~ds---------------~~laT~swsG~~kvW~~~~-------------------~~~~~~l~gH 216 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDS---------------KHLATGSWSGLVKVWSVPQ-------------------CNLLQTLRGH 216 (459)
T ss_pred hccCCCcceeeEeecCC---------------CeEEEeecCCceeEeecCC-------------------cceeEEEecc
Confidence 34567778888888877 5899999999999994433 3678899999
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004594 555 TSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~~i~fspd--g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~ 632 (743)
++.|.++.|+|. +..+|||+.||+|++|++++..++..+++|...|..|+|||+|++|+|++.|.+-++||++++..
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E- 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE- 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-
Confidence 999999999995 66899999999999999999899999999999999999999999999999999999999999776
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEec
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~ 708 (743)
+....||...|.+++|+|||. +++||+.|..-||||+|+|.|+..+.+|. .+.|+|+|-.|++|+.|++++||+.
T Consensus 296 lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 677889999999999999987 88899999999999999999999999984 3889999999999999999999886
Q ss_pred ccc--------------eEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 709 FLN--------------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 709 ~v~--------------~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
... -+.+.+ ..+.+|+|+|+|++++||....
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred cccccceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCC
Confidence 532 233333 2377999999999999997653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=267.02 Aligned_cols=225 Identities=25% Similarity=0.328 Sum_probs=192.2
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+.++.|+|++ +.+++|+-|.++++|+. .+..+..+.++|...
T Consensus 114 H~e~Vl~~~fsp~g---------------~~l~tGsGD~TvR~WD~-------------------~TeTp~~t~KgH~~W 159 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTG---------------SRLVTGSGDTTVRLWDL-------------------DTETPLFTCKGHKNW 159 (480)
T ss_pred CCCcEEEEEecCCC---------------ceEEecCCCceEEeecc-------------------CCCCcceeecCCccE
Confidence 45577788899977 58999999999999944 444678899999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEEccCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~-~~l~~H~~~V~~l~fsp-----d~~~L~Sgs~Dg~V~vWDl~~~~~ 631 (743)
|.||+|+|||+.||+|+.||+|++||.++++.+ +.+.+|+..|++++|.| ..++|++++.||.|+|||+..+ .
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~ 238 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-T 238 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-e
Confidence 999999999999999999999999999987654 68899999999999987 4678999999999999999864 4
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----e-----------eeecCCCE---
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----M-----------PIILKGCF--- 693 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i-----------~~s~~g~~--- 693 (743)
|+..+.||+.+|+||+|--+ .++++++.|++|++|+...|.+.+.+++|.. + +|.+.+++
T Consensus 239 ~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 69999999999999999744 5899999999999999999999999988732 2 34455555
Q ss_pred ----------------------EEEEecCCeEEEEecccc-------------eEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 694 ----------------------ILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 694 ----------------------L~sgs~Dg~v~vh~~~v~-------------~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+++|++|.++.+|+.... +..+.+.++..+|+++|.|..|++|+-
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 999999999999875432 344566666899999999999999975
Q ss_pred C
Q 004594 739 L 739 (743)
Q Consensus 739 ~ 739 (743)
.
T Consensus 397 ~ 397 (480)
T KOG0271|consen 397 R 397 (480)
T ss_pred C
Confidence 4
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=243.53 Aligned_cols=248 Identities=15% Similarity=0.262 Sum_probs=200.6
Q ss_pred cccCCCCCceEEEEecCCC-ccccccCc-------cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004594 474 LQHNGASSKSLLMFGSDGM-GSLTSAPN-------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~-~~l~~~~~-------~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
...+++-+..+++|..... +..+.+-. .+.+...++++|+.|+...+|...... .....
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d-------------~~g~~ 135 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD-------------AEGNV 135 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc-------------ccccc
Confidence 3444555666666665433 22222211 145566889999999888888554210 11233
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vW 624 (743)
...+.+.+|++.+.||.|-+|+ .|+|++.|.++.+||+++++.+..|.+|++.|.++.+.| +++.|++|+.|++.++|
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 4566789999999999998755 688999999999999999999999999999999999999 89999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec------cCceeeecCCCEEEEEe
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPIILKGCFILNSI 698 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~------~~~i~~s~~g~~L~sgs 698 (743)
|+|.+. |+.+|.+|++.|++|+|+|+|. -|++|++|+++|+||+|....+..|.. .+++.|+..|++|++|.
T Consensus 215 D~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 215 DVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eccCcc-eeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 999874 6999999999999999999986 778999999999999999988888874 36688999999999999
Q ss_pred cCCeEEEEecc------------cceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 699 FNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~v~vh~~~------------v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.|.++.+|+.. ..+.++...+++.-|+|||||.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999998743 2334445555588999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=276.18 Aligned_cols=238 Identities=19% Similarity=0.331 Sum_probs=199.1
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCC--------CCCCcc----ccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDA--------DPRDRV----GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL 569 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~ 569 (743)
+.|...++|.|-.|..|++|...... ...... ....+..+........++.+|+++|+.+.|+|+.++
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 45555799999999999999765321 000000 000112222333456668999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe
Q 004594 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (743)
Q Consensus 570 LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fs 649 (743)
|+++++|++||+|.+++..++..+.||..+|++|+|+|.|-+|||++.|++.++|.... ..+++.|.+|-+.|.|+.||
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFH 544 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEEC
Confidence 99999999999999999999999999999999999999999999999999999999987 44699999999999999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc------------ceE
Q 004594 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL------------NLL 713 (743)
Q Consensus 650 pdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l 713 (743)
|+.. ++++||.|.+||+||+.+|.+++.|.+|. .++++|+|+||++|+.|+.|++|+... ...
T Consensus 545 PNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 545 PNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred Cccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 9965 77799999999999999999999999984 478999999999999999999988654 234
Q ss_pred EEeecCCCCEEEEEeCCCcEEEeCCCcc
Q 004594 714 SVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 714 ~vs~~~~~~~laSgs~DG~V~iWd~~~l 741 (743)
++.+..++..|++||.|.+|++||-...
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 4555556889999999999999986554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=234.51 Aligned_cols=243 Identities=21% Similarity=0.292 Sum_probs=197.7
Q ss_pred cccccCCCCCceEEEEecCCC-ccccccCccccC------------CCCEEEEeeCCCcEEEEecCCCCCCCCccccccc
Q 004594 472 PTLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTD------------MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (743)
Q Consensus 472 ~~l~~~~s~~~s~~~fs~d~~-~~l~~~~~~l~d------------~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~ 538 (743)
+.+..++++++.++.|..... ..++.+...+.+ ...+..++++|+++++|+...+
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------ 95 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------ 95 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC------------
Confidence 356677889999999987655 223333333333 3577889999999999965443
Q ss_pred cCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccC--CCCEEEEEEcCC--CCEEEE
Q 004594 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLAT 614 (743)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H--~~~V~~l~fspd--~~~L~S 614 (743)
+..+.|.+|+.-|.+++|++|.+.|++|+.|++|++||+.. .+..++..+ .+.|.||+|+|+ ..+|++
T Consensus 96 -------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 96 -------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred -------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 56678899999999999999999999999999999999875 455555444 789999999997 779999
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCC
Q 004594 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKG 691 (743)
Q Consensus 615 gs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g 691 (743)
++.|++|++||+++-.. ...+.||.+.|+.++++|||. +.++|+.||.+.+||++.++++..+.+. ..++|+|+.
T Consensus 168 ~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR 245 (315)
T ss_pred ccCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence 99999999999998554 788999999999999999987 8889999999999999999998887764 557899998
Q ss_pred CEEEEEecCCeEEEEecc---------------------cceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 692 CFILNSIFNCYLLLHRIF---------------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 692 ~~L~sgs~Dg~v~vh~~~---------------------v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
-+|+.+... .|+||+.. ..++.+.+..++..|++|-.|+.|++|.
T Consensus 246 ywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 246 YWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 887776655 48887632 2345556666688999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=247.83 Aligned_cols=241 Identities=16% Similarity=0.276 Sum_probs=198.6
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCC--------------------------
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR-------------------------- 530 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~-------------------------- 530 (743)
.+..-+.++.|+||+ ..|++|+.|+.|++|+...+....
T Consensus 155 gH~~WVlcvawsPDg---------------k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~ 219 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDG---------------KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR 219 (480)
T ss_pred CCccEEEEEEECCCc---------------chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence 344566677777777 467777777777777655443211
Q ss_pred ------CccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEE
Q 004594 531 ------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (743)
Q Consensus 531 ------~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~ 604 (743)
+...++|+...+ ..+.++.+|+.+|+||+|--+| +|++|+.|++|++|+...|.+.+++++|...|..++
T Consensus 220 las~skDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred eecccCCCCEEEEEccCc---eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 222234433322 5678889999999999996444 899999999999999999999999999999999988
Q ss_pred Ec-----------CCCC-------------------------EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004594 605 FS-----------PSLS-------------------------RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 605 fs-----------pd~~-------------------------~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~f 648 (743)
.+ |.++ ++++|+.|.++.+|+......++..+.+|...|+.+.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 76 2233 49999999999999998878789999999999999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEecc------------cce
Q 004594 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIF------------LNL 712 (743)
Q Consensus 649 spdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~------------v~~ 712 (743)
+||+. ++|+++.|..||+||.++|+.+.+|++|-. ++++.|.++|++|+.|.++++|+.. ..+
T Consensus 376 SPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 376 SPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred CCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceE
Confidence 99986 788999999999999999999999998844 7799999999999999999998754 246
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 713 LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 713 l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
+++.+.+++..+++|+.|..+++|.
T Consensus 455 f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEecCCCceeecCCCceEEEeec
Confidence 6777777799999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=230.45 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=185.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+.+++.|.++.+|....+ +......++.++||...|..+..++||.+.++++.|+++++||+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 378899999999999977655 233346788899999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCC-CeEEEEEeCC
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNN 662 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh--~~~V~sl~fspdg-~~llaSgs~D 662 (743)
+++..+.|.+|+..|.+++|++|.+.|+||+.|.+|++|++... |..++..+ +..|.+++|+|+. +.+|++++.|
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 99999999999999999999999999999999999999998753 34555443 7899999999985 5588899999
Q ss_pred CcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEeecCCCCEEEEE
Q 004594 663 SEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------~~l~vs~~~~~~~laSg 727 (743)
++||+||+++-+....+.+|+ .++++|||..+++|+.||.+.+|+... .+.++++.+ ..+.++.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-nrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-NRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-CceeEee
Confidence 999999999999888888874 478999999999999999999987542 122333333 5688888
Q ss_pred eCCCcEEEeCCC
Q 004594 728 SWKDSCCSHREL 739 (743)
Q Consensus 728 s~DG~V~iWd~~ 739 (743)
..+..|+|||..
T Consensus 251 at~~sIkIwdl~ 262 (315)
T KOG0279|consen 251 ATATSIKIWDLE 262 (315)
T ss_pred ccCCceEEEecc
Confidence 888999999854
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=264.54 Aligned_cols=187 Identities=28% Similarity=0.403 Sum_probs=173.0
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW 582 (743)
.+.++||.++|.|++|++| .-.++..+..+++|..+|.++.|+|.|-+||||+.|++.++|
T Consensus 460 sPd~rfLlScSED~svRLW-------------------sl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLW-------------------SLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred cccccceeeccCCcceeee-------------------ecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 3445899999999999999 444556778889999999999999999999999999999999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 583 d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
..+...+++.+.+|-+.|.|+.|||+..+++||+.|.+||+||+.++.. ++.|.||.++|.+|+|+|+|. +|++|+.|
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed 598 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGR-YLASGDED 598 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCc-eEeecccC
Confidence 9999999999999999999999999999999999999999999999775 999999999999999999987 77799999
Q ss_pred CcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004594 663 SEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+.|+|||+.+++.+..+.+|+. +.|+.+|..|++|+.|++|++|+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999988843 77999999999999999999998654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=225.25 Aligned_cols=225 Identities=21% Similarity=0.293 Sum_probs=181.3
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+.+.++.+.|+|.+ ++|+++|+|.++.+|.- ...+++.+.+++||..
T Consensus 59 ~hkrsVRsvAwsp~g---------------~~La~aSFD~t~~Iw~k-----------------~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHG---------------RYLASASFDATVVIWKK-----------------EDGEFECVATLEGHEN 106 (312)
T ss_pred cchheeeeeeecCCC---------------cEEEEeeccceEEEeec-----------------CCCceeEEeeeecccc
Confidence 345566666666655 79999999999999933 3446788999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCCe
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDY 631 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t---~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~--~~~~ 631 (743)
.|.|++|+++|++|||++.|+.|.||.+.. .+++..+.+|+..|..+.|||...+|+|++.|.+|++|+-. ..-.
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 999999999999999999999999999863 56888999999999999999999999999999999999765 2346
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEE------
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL------ 705 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~v------ 705 (743)
|+.++.+|.+.|.+++|++.|. .+++|+.|++|+||-..+.-....-...-.+++. ...|++++.|+.|++
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred EEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 7899999999999999999986 5669999999999986532111000001113344 567899999999988
Q ss_pred ---------------EecccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 706 ---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 706 ---------------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
|...++.+.+.+. ..++|++||.||.|++|.
T Consensus 264 ~d~p~~~l~~~~~~aHe~dVNsV~w~p~-~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHEVDVNSVQWNPK-VSNRLASGGDDGIVNFWE 309 (312)
T ss_pred CCCchHHHHHhhhcccccccceEEEcCC-CCCceeecCCCceEEEEE
Confidence 4455666666662 267999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=255.73 Aligned_cols=227 Identities=26% Similarity=0.402 Sum_probs=192.4
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+.++.|++++ +++++++.|+.+++|...... . .....+.+|...|
T Consensus 159 ~~sv~~~~fs~~g---------------~~l~~~~~~~~i~~~~~~~~~--------------~---~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG---------------RALAAASSDGLIRIWKLEGIK--------------S---NLLRELSGHTRGV 206 (456)
T ss_pred cCceEEEEEcCCC---------------CeEEEccCCCcEEEeeccccc--------------c---hhhccccccccce
Confidence 5677778888888 579999999999999662221 0 2445568999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~-~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
.+|+|+|+++++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|||||++++ .++..+.
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~ 285 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLK 285 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeee
Confidence 99999999999999999999999999 556899999999999999999999999999999999999999984 4699999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe--EEEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~--~v~~~~~~------~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
+|...|++++|.+++. +|++++.|+.|+|||+.++. |+..+..+ ..+.|+|++.|+++++.|+.+++|+..
T Consensus 286 ~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred ccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999987 56677889999999999999 56666543 346688999999999999999998765
Q ss_pred cc---------------eEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 710 LN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 v~---------------~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.. .+.+.....+.++++|+.|+.|++|+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 21 1122233457899999999999999875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=225.41 Aligned_cols=229 Identities=23% Similarity=0.346 Sum_probs=197.6
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
....+...+.++.|++|. +.++++|.||.+.+|++ ++...++.+.-
T Consensus 50 ~LkGH~~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs-------------------~TtnK~haipl 95 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDS---------------RRIVSASQDGKLIVWDS-------------------FTTNKVHAIPL 95 (343)
T ss_pred EecccccceeeeEecCCc---------------CeEEeeccCCeEEEEEc-------------------ccccceeEEec
Confidence 344555688889999987 68999999999999944 44456777888
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~------~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
.+..|..|+|+|.|+++|+|+-|+.+.||++.+. +..+.+.+|++.+.|+.|-+| ..|+|++.|.+.-+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcc
Confidence 8899999999999999999999999999999854 456778999999999999874 678999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeE
Q 004594 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 628 ~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v 703 (743)
++.. +..|.||.+.|.+|++.|...+.|++|+-|+..++||+|.+.|+..|.+| +.+.|.|+|.-+++|++|++.
T Consensus 175 ~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 175 TGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred cceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 9776 89999999999999999955568889999999999999999999999998 458999999999999999999
Q ss_pred EEEeccc--------------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 704 LLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 704 ~vh~~~v--------------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
++.+..- .+.++.+...+.+|++|..|.+|.+||.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 9965432 2334445555889999999999999985
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=249.61 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=184.3
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+++++++.|.++++|+... ....++++++|...|+||+|+|+|++|++|+.|++|+|||+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~------------------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKD------------------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred cEEEEecCCceEEEeeccC------------------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 6999999999999995522 2256788999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC--eEEEEEecCCCeEEEEEeCCC
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~-~l~~l~gh~~~--V~sl~fspdg~~llaSgs~Dg 663 (743)
++++..+.+|...|++++|++++.+|++++.|+.|+|||+.++.. ++..+.++... ++++.|+|++.+++ ++..|+
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d~ 356 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLDR 356 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE-EecCCC
Confidence 999999999999999999999999999999999999999998774 46777777766 99999999988555 888899
Q ss_pred cEEEEECCCCeEEEEEeccCc-------eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEeecCCCCE
Q 004594 664 EIRYWSINNGSCAGVFKVCNL-------MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDE 723 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~~~-------i~~s~~g~~L~sgs~Dg~v~vh~~~v-------------~~l~vs~~~~~~~ 723 (743)
.|++||++.+.++..+.+|.. ....+.+.++++|+.|+.|.+|+... ........+...+
T Consensus 357 ~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 357 TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred eEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 999999999999999988754 22357899999999999999987551 1233334444678
Q ss_pred EEEEe--CCCcEEEeCCCc
Q 004594 724 ISTSS--WKDSCCSHRELY 740 (743)
Q Consensus 724 laSgs--~DG~V~iWd~~~ 740 (743)
+++++ .|+.|++|...+
T Consensus 437 ~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eeecCcCCCceEEEecCCC
Confidence 88888 789999998765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=232.81 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=181.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
+.|+++|+.|+++++|+...+ ....++.+|...|..++||+.-.|+++++.|+.|+.||++
T Consensus 163 n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred ceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 479999999999999966554 5667889999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
..+.++.+.||-..|+|++.+|..+.|+||+.|.++||||+++.. .+.++.||...|.+|.+.|..+. +++||.|++|
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~tv 301 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VITGSHDSTV 301 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eEEecCCceE
Confidence 999999999999999999999999999999999999999999855 59999999999999999988764 4599999999
Q ss_pred EEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEec--------------ccceEEEeecCCCCEEEEE
Q 004594 666 RYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRI--------------FLNLLSVSEWCNPDEISTS 727 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~--------------~v~~l~vs~~~~~~~laSg 727 (743)
|+||++.|+.+.++..| ..++++|....+++++.|. |+-|+. .+..+++. ..+++++|
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~n---sD~v~~~G 377 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVN---SDGVLVSG 377 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeec---cCceEEEc
Confidence 99999999998888776 3477889999999999885 444332 33333332 25799999
Q ss_pred eCCCcEEEeCCC
Q 004594 728 SWKDSCCSHREL 739 (743)
Q Consensus 728 s~DG~V~iWd~~ 739 (743)
+.+|.+..||-.
T Consensus 378 ~dng~~~fwdwk 389 (460)
T KOG0285|consen 378 GDNGSIMFWDWK 389 (460)
T ss_pred CCceEEEEEecC
Confidence 999999999753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=242.21 Aligned_cols=223 Identities=21% Similarity=0.343 Sum_probs=190.9
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
.+.+..+.|.|+| +-|.+|+..|.+.+| ++..+....++.+|.++|
T Consensus 96 kc~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~V 141 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPV 141 (464)
T ss_pred ccceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhcccc
Confidence 3466778898888 578999999999999 555555666778999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~-~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
+++.|+++|.++++|+.||.|++|+..- ..+..+.+|. ..|+|++|+|+...|+||+.||+|+|||....+. ...+.
T Consensus 142 r~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~ 219 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLR 219 (464)
T ss_pred eeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheec
Confidence 9999999999999999999999999753 4445555555 8999999999999999999999999999988665 67789
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEE-------
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLH------- 706 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh------- 706 (743)
||.-.|.+++|||... +++++|.|..|++||.+++.|+.++.+|.. +.|.++++||++++.|..+++.
T Consensus 220 GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 9999999999999965 888999999999999999999999988754 5688999999999999999994
Q ss_pred -------ecccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 707 -------RIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 707 -------~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
...+..+.|.+.. .+.|.+|++||.|..|.-.
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~-~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLN-ESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHHhhcchhhheeecccccc-ccceeeccCCCceEEEecc
Confidence 4445566666554 7899999999999999643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=216.85 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=179.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.++++++.|+.|++|.... +.++.....+ .+|+..|++|+|+|.|++||+||.|.++.||.-.
T Consensus 28 ~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred eEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 5899999999999995532 1223444444 3799999999999999999999999999999754
Q ss_pred --CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 586 --SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 586 --t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~--~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
..+++.+++||...|.|++|+++|.+||||+.|+.|-||.+... -.|+..+.+|+-.|..+.|||... +|+|||.
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SY 170 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSY 170 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEecc
Confidence 46889999999999999999999999999999999999998843 357889999999999999999854 8889999
Q ss_pred CCcEEEEECC---CCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEec--cc-----ceEE-EeecCCCCEEEE
Q 004594 662 NSEIRYWSIN---NGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRI--FL-----NLLS-VSEWCNPDEIST 726 (743)
Q Consensus 662 Dg~IrvWDl~---tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~--~v-----~~l~-vs~~~~~~~laS 726 (743)
|.+||+|+-. .-.|+.++.+|+. +.|++.|..+++++.|++++||.. .+ ..+. +... .+.|+|
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS 248 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIAS 248 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEe
Confidence 9999999876 3478899998863 668899999999999999999882 11 1222 3333 679999
Q ss_pred EeCCCcEEEeCCC
Q 004594 727 SSWKDSCCSHREL 739 (743)
Q Consensus 727 gs~DG~V~iWd~~ 739 (743)
++.|+.|++|.+.
T Consensus 249 ~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 249 GGGDDAIRLFKES 261 (312)
T ss_pred ccCCCEEEEEEec
Confidence 9999999999654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=232.73 Aligned_cols=225 Identities=16% Similarity=0.319 Sum_probs=192.6
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
..+++++.|+.+| .+|++|+.||.+++|.... ..+.++.-|+++|
T Consensus 235 nkdVT~L~Wn~~G---------------~~LatG~~~G~~riw~~~G--------------------~l~~tl~~HkgPI 279 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG---------------TLLATGSEDGEARIWNKDG--------------------NLISTLGQHKGPI 279 (524)
T ss_pred cCCcceEEecCCC---------------CeEEEeecCcEEEEEecCc--------------------hhhhhhhccCCce
Confidence 3578889999988 5999999999999994422 3566788899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEEccCC
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHT 597 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~-----------------------------------------~~~~l~~H~ 597 (743)
.++.|+.+|.+|++++.|+++.|||..++. ++.++.+|.
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 999999999999999999999999985432 233456899
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC--------eEEEEEeCCCcEEEEE
Q 004594 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--------DLLCSCDNNSEIRYWS 669 (743)
Q Consensus 598 ~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~--------~llaSgs~Dg~IrvWD 669 (743)
+.|.++.|+|.+.+|+|++.|++++||...... +...+.+|...|..+.|+|+|+ ..+++++.|++|++||
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 999999999999999999999999999988644 5889999999999999999753 4678999999999999
Q ss_pred CCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEeecCCCCEEEEEeCCCcEE
Q 004594 670 INNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 670 l~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------~~l~vs~~~~~~~laSgs~DG~V~ 734 (743)
+..+.|+++|..|. .++|+|+|+|+++|+.||.|.+|+... .++.+++.+++..|..+-.|+.|+
T Consensus 439 v~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 439 VESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred ccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence 99999999997763 378999999999999999999986542 345666667688999999999999
Q ss_pred EeCCC
Q 004594 735 SHREL 739 (743)
Q Consensus 735 iWd~~ 739 (743)
+-|-+
T Consensus 519 vldlr 523 (524)
T KOG0273|consen 519 VLDLR 523 (524)
T ss_pred EEEec
Confidence 87754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-26 Score=240.53 Aligned_cols=229 Identities=16% Similarity=0.242 Sum_probs=192.8
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+...++.+.|++++ .++++|+.|+.|+.|.. ....++.+.
T Consensus 132 tilQaHDs~Vr~m~ws~~g---------------~wmiSgD~gG~iKyWqp--------------------nmnnVk~~~ 176 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNG---------------TWMISGDKGGMIKYWQP--------------------NMNNVKIIQ 176 (464)
T ss_pred HHhhhhcccceeEEEccCC---------------CEEEEcCCCceEEeccc--------------------chhhhHHhh
Confidence 3445567788889999877 59999999999999933 223445555
Q ss_pred CCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004594 553 AST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 553 ~H~-~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~ 631 (743)
+|. ..|+|++|+|....|+||++|++|+|||....+..+.+.+|...|.|++|||...+|++++.|..|++||.+++.
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~- 255 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS- 255 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-
Confidence 555 899999999988899999999999999999988889999999999999999999999999999999999999976
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeec-CCCEEEEEecCCeEEEE
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIIL-KGCFILNSIFNCYLLLH 706 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~-~g~~L~sgs~Dg~v~vh 706 (743)
|+.++.+|+..|..+.|.|++ ++|+++|.|..++++|+++.+.+.++++|. .+.++| ....+.+|+.||.|..|
T Consensus 256 cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEE
Confidence 599999999999999999998 577799999999999999988889998874 366776 45678889999999986
Q ss_pred eccc-------------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 707 RIFL-------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 707 ~~~v-------------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.... .+.++...+-+..|++|+.|.++++|..
T Consensus 335 ~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 335 VVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 5441 2233333444778999999999999953
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=237.37 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=198.3
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
.+..+.++-+||.. .++.++-+.|+|.+|+. .+-..++.+.-...+
T Consensus 12 rSdRVKsVd~HPte---------------Pw~la~LynG~V~IWny-------------------etqtmVksfeV~~~P 57 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTE---------------PWILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVP 57 (794)
T ss_pred cCCceeeeecCCCC---------------ceEEEeeecCeeEEEec-------------------ccceeeeeeeecccc
Confidence 44556666666644 69999999999999944 444677888888889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
|.++.|-...++|++|++|..|+||++.+++.+..|+.|.+.|+|++.||...+++|++.|-+|++||.+....|..+|.
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeec--CCCEEEEEecCCeEEEEeccc-
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIIL--KGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~--~g~~L~sgs~Dg~v~vh~~~v- 710 (743)
||+..|+.|+|+|...+.|+||+.|++|+||.+....+..++.+|. ++.+-+ +..||++|++|.+++||+...
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 9999999999999999999999999999999999999999999873 455554 446999999999999987432
Q ss_pred -----------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 711 -----------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 -----------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
++-.+++.+.-..|+|||.||+|+||+..
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 23344555545689999999999999764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=214.66 Aligned_cols=225 Identities=17% Similarity=0.189 Sum_probs=193.2
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+..+.|+-|+ ++..+++.|.+|++|... ....++++.+|..
T Consensus 15 ~~qgaV~avryN~dG---------------nY~ltcGsdrtvrLWNp~-------------------rg~liktYsghG~ 60 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDG---------------NYCLTCGSDRTVRLWNPL-------------------RGALIKTYSGHGH 60 (307)
T ss_pred ccccceEEEEEccCC---------------CEEEEcCCCceEEeeccc-------------------ccceeeeecCCCc
Confidence 345577788888888 588899999999999443 3467899999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEE
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRT 635 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~-~~l~~ 635 (743)
.|..++.+.|+..|++|+.|+.|.+||+.+++.++.|.+|.+.|..|+|+.+...+++|+.|.+|++||.+... .+++.
T Consensus 61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred eeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754 46888
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc--CceeeecCCCEEEEEecCCeEEEEecc----
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF---- 709 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~L~sgs~Dg~v~vh~~~---- 709 (743)
+......|.+|.... +.+++|+.||++|.||++.|.....+-++ ++++|++++++.+.++.|+++++-+..
T Consensus 141 ldea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 888889999999873 46779999999999999999988777765 568899999999999999999994322
Q ss_pred ----------cceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 ----------v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
...+..+.......+++||.||.|++||-
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 22233344444678999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=235.62 Aligned_cols=205 Identities=17% Similarity=0.290 Sum_probs=175.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+++|..|++|++|+. ........+.||++.|.|+.| +.+.|++|+.|.+|+|||+.+
T Consensus 208 ~kiVSGlrDnTikiWD~-------------------n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDK-------------------NSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred hhhhcccccCceEEecc-------------------ccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC
Confidence 56799999999999933 333556778999999999999 567999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~--~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
++++.++-+|...|..++|+. .+++|++.|.+|.|||+..+.. +.+.+.||...|+.++|+.. ++++++.|.+
T Consensus 267 ge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRT 341 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT 341 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCce
Confidence 999999999999999999974 6899999999999999987652 34578899999999999843 7889999999
Q ss_pred EEEEECCCCeEEEEEeccC-cee-eecCCCEEEEEecCCeEEEEecccce------------EEEeecCCCCEEEEEeCC
Q 004594 665 IRYWSINNGSCAGVFKVCN-LMP-IILKGCFILNSIFNCYLLLHRIFLNL------------LSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~-~i~-~s~~g~~L~sgs~Dg~v~vh~~~v~~------------l~vs~~~~~~~laSgs~D 730 (743)
|++|++.++++++++.+|. .++ .--.|+++++|+.|.+|++|+..-.. -++-++ ...+++|++|
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 9999999999999999984 344 55689999999999999999865321 122333 6799999999
Q ss_pred CcEEEeCCC
Q 004594 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
|+|++||-.
T Consensus 420 GkikvWdl~ 428 (499)
T KOG0281|consen 420 GKIKVWDLQ 428 (499)
T ss_pred ceEEEEecc
Confidence 999999854
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=218.68 Aligned_cols=214 Identities=16% Similarity=0.267 Sum_probs=183.2
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd 583 (743)
+++.+++++-||++++|+... ...++..+++|...|.+|.|++ ++..+++++.|++||+|+
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTM------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred CcceEEEEecCceEEEeccCC------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 468889999999999995322 2357889999999999999999 666788999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
....+.+.++.||...|+...|+| ..+++++++.|+++++||++...+ ...+..|...|.+++|+.-.+++++||+.|
T Consensus 134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCC
Confidence 999999999999999999999999 488999999999999999998776 444889999999999999888999999999
Q ss_pred CcEEEEECCCC-eEEEEEecc----CceeeecC-CCEEEEEecCCeEEEEecc---------------cceEEEeecCCC
Q 004594 663 SEIRYWSINNG-SCAGVFKVC----NLMPIILK-GCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNP 721 (743)
Q Consensus 663 g~IrvWDl~tg-~~v~~~~~~----~~i~~s~~-g~~L~sgs~Dg~v~vh~~~---------------v~~l~vs~~~~~ 721 (743)
+.||+||+++- .++.++.+| ..+.++|. ...|++++.|-+++||+.. +..+.|+.. .+
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~ 291 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DP 291 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-cC
Confidence 99999999974 466777666 34667765 4578899999999997654 344556665 48
Q ss_pred CEEEEEeCCCcEEEeCC
Q 004594 722 DEISTSSWKDSCCSHRE 738 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~ 738 (743)
+.+++++||+.++||+.
T Consensus 292 ~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 292 GQVASTGWDELLYVWNP 308 (311)
T ss_pred ceeeecccccceeeecc
Confidence 99999999999999985
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=236.16 Aligned_cols=215 Identities=20% Similarity=0.295 Sum_probs=185.2
Q ss_pred cccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 004594 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (743)
Q Consensus 501 ~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~ 580 (743)
.+-...+|+++|+.|..|++| +-.+...++.|+.|.+.|.||+.+|.-.+++|+|+|-+|+
T Consensus 62 kfiaRknWiv~GsDD~~IrVf-------------------nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVF-------------------NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred eeeeccceEEEecCCceEEEE-------------------ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 355557999999999999999 4445578899999999999999999999999999999999
Q ss_pred EEECCC-CeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC-eEEE
Q 004594 581 LWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLC 657 (743)
Q Consensus 581 IWd~~t-~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~-~lla 657 (743)
+||.+. ..+..+|+||+..|.+|+|+| |.+.++|++.|++|+||.+.... +..++.+|...|++|+|-+.|. .+|+
T Consensus 123 lW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 123 LWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEE
Confidence 999986 568889999999999999999 57899999999999999999855 5899999999999999987653 3677
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc------------ceEEEeecCCC
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNP 721 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l~vs~~~~~ 721 (743)
||++|.+|+|||..+..|+.++.+|. .++|+|.-..|++|++||+++||.... .+.++......
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 99999999999999999999999984 377999999999999999999986442 34444444556
Q ss_pred CEEEEEeCCCcEEE
Q 004594 722 DEISTSSWKDSCCS 735 (743)
Q Consensus 722 ~~laSgs~DG~V~i 735 (743)
+.++.|...|.|.+
T Consensus 282 ~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 282 GKIAVGFDEGSVTV 295 (794)
T ss_pred CeEEEeccCCcEEE
Confidence 67777777776654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=209.64 Aligned_cols=192 Identities=16% Similarity=0.228 Sum_probs=158.6
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
.++.++.+|+..|++|.|..+|++++||++||+|||||++...+-+.+ .|.++|.+|..+|+...|++|..+|.|+|||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 488999999999999999999999999999999999999997766666 4789999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC------eEEEEEeccCc----eeeecCCCEEE
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFKVCNL----MPIILKGCFIL 695 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg------~~v~~~~~~~~----i~~s~~g~~L~ 695 (743)
+.+....-..+......|.++...|||. +++.+...|.+.+|++-++ +++..|+.|+. +-++|+++||+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 9986542233334456899999999998 5557777899999999764 34555666643 56889999999
Q ss_pred EEecCCeEEEEecccc-------------eEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 696 NSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 696 sgs~Dg~v~vh~~~v~-------------~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+++.|.+++||..... .....+..++.+|++++.|+.+++|+-.
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 9999999999976543 1122344558899999999999999854
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=217.06 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=190.7
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+-.+.|+|++ .++++|+.|.-|.+|....+. +-+..+++|+++
T Consensus 46 h~geI~~~~F~P~g---------------s~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgA 92 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDG---------------SCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGA 92 (338)
T ss_pred CcceEEEEEECCCC---------------CeEeecCCcceEEEEeccccc------------------cceeeeccccce
Confidence 34566778899977 589999999999999654331 234566799999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~-~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
|..+.|.+|++.|++++.|++|+.||++++++++.+++|...|..+.-+.-+ .++.|++.|++++|||+|+.. +++++
T Consensus 93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~ 171 (338)
T KOG0265|consen 93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF 171 (338)
T ss_pred eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc
Confidence 9999999999999999999999999999999999999999999998743333 457888999999999999854 47777
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEecc---
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIF--- 709 (743)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~--- 709 (743)
. ..-.++++.|..++..++ +|+-|+.|++||++.+.+..++++| +.+..+++|.++++-+.|+++++|+..
T Consensus 172 ~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 172 E-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred c-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 5 346799999999887666 8999999999999999999999997 447788999999999999999997643
Q ss_pred -----------------cceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 710 -----------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 710 -----------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
.+.+..++.++...+.+|+.|..|++||..+
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 2344455566678999999999999999876
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=238.17 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=162.4
Q ss_pred ccccCCCCCceEEEEecCCCccccc-------cCcc------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTS-------APNQ------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l~~-------~~~~------l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~ 539 (743)
.+..+++.|++++.|-.+...+... ..+. -.....|++++|.|+++++|.........
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~--------- 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA--------- 448 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc---------
Confidence 4667789999999996643311100 0111 12235899999999999999766521111
Q ss_pred CCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
....+..-.+...|...|+|++++|+.++|||||.|++++||+++......++.||+..|+||.|+|....++|++.|+
T Consensus 449 -~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 449 -FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred -ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 1112222234568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc
Q 004594 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL 684 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~ 684 (743)
+|+||.+.+.. |+.+|.||+..|..+.|-.++. .|+||+.||.|++|++++++|+.++..|+.
T Consensus 528 TvKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 528 TVKIWSISTFS-CLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred eEEEEEeccce-eeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 99999999866 6999999999999999999987 455999999999999999999999988753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=239.38 Aligned_cols=213 Identities=21% Similarity=0.286 Sum_probs=182.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
...|+.++-+.|.|.+|+..-+ ..+..|.+|.++|..|+|+|+..+|++|++|.+|+||++
T Consensus 20 ~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 20 KRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred CCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 3479999999999999954332 456778899999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
++.+++.++.||-+.|..+.||+.-.+|+|++.|-|||||+..++. |+.++.||...|+|..|||..+ +++|+|.|-+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQT 158 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQT 158 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccce
Confidence 9999999999999999999999999999999999999999999855 6999999999999999999854 8889999999
Q ss_pred EEEEECCCCe-----------------------------EEEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-
Q 004594 665 IRYWSINNGS-----------------------------CAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 665 IrvWDl~tg~-----------------------------~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v- 710 (743)
|||||+..-+ ..+.+.+| +.++|+|.-..|++|++|..|++|+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985211 11233344 4478999999999999999999987543
Q ss_pred -------------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 711 -------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 -------------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.+.++-+.+....|+|.|.|++|+|||-
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 2344455555689999999999999984
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=221.40 Aligned_cols=241 Identities=19% Similarity=0.371 Sum_probs=195.5
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCC-----------------------------
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------------------- 527 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~----------------------------- 527 (743)
.++...++..|+|.| .++++|...|+|++|+.....
T Consensus 57 EH~~~vtVAkySPsG---------------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSG---------------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred cccceeEEEEeCCCc---------------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEE
Confidence 346667777777765 599999999999999876532
Q ss_pred -CCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEE
Q 004594 528 -DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605 (743)
Q Consensus 528 -~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~-~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~f 605 (743)
++++++++......+ ..+..+.+|...|++|+|-|... +++||++|++|.+|.-.-.+...++..|...|.|++|
T Consensus 122 GEGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred ecCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 122333333222222 34567789999999999999766 6999999999999998888888899999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 004594 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 606 spd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~---gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
+|||.+|+|.+.||+|.+||-.+++. +..+. +|.+.|.+|.|+||+..++ +++.|.++||||+.+.+++.++...
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999998876 77777 8999999999999987555 9999999999999999999999865
Q ss_pred Cc-----eeeecCCCEEEEEecCCeEEE--------------EecccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 683 NL-----MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 683 ~~-----i~~s~~g~~L~sgs~Dg~v~v--------------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.. +.+.-....|++-+.+|+|.+ |...+.++.+... +.+|++|++||.|..|+-.
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEEeeccCceEEEEecC
Confidence 43 222223667888888888777 6677777777766 6899999999999999753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-24 Score=218.92 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=170.8
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
+..++.+.+|...|.++.|-|.|.+|++++.|.+|+.|++.++.++.+|.+|...|..++.+.||.++++|+.|-+|++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 45567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecC--------------CCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----cee
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMP 686 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspd--------------g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~ 686 (743)
-+.++. |...+..|..+|-+++|.|. +..++++++.|++||+||+.++.|+.++.+|. .++
T Consensus 263 ~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 263 VVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred Eeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 999854 57889999999999999873 23588899999999999999999999999984 488
Q ss_pred eecCCCEEEEEecCCeEEEEecccc------------eEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 687 IILKGCFILNSIFNCYLLLHRIFLN------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 687 ~s~~g~~L~sgs~Dg~v~vh~~~v~------------~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+|.|+||++..+|+++++|+.... +.++++..+..+++||+-|-++++|-++
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 9999999999999999999875421 2223333335599999999999999764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=223.12 Aligned_cols=239 Identities=21% Similarity=0.304 Sum_probs=186.3
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCc--cccccccCCCceeeeEEEeeCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR--VGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
....+.+..|+|... .++++|+.|.+.++|........... ..+......+ +. ...+
T Consensus 177 ~~~~V~~~~WnP~~~--------------~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~------~s-~~~n 235 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD--------------GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGG------KS-VPSN 235 (524)
T ss_pred CCCceEEEecCchhh--------------hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhc------cc-CCcc
Confidence 556777788888553 47899999999999976542111000 0000000000 00 0123
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----- 630 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~----- 630 (743)
..|++++|+.+|.+||+|+.||.++||+.. +..+.++..|+++|.++.|+.+|++|++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 459999999999999999999999999965 67888999999999999999999999999999999999985332
Q ss_pred -----------------------------------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 004594 631 -----------------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 631 -----------------------------------~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
.++.++.+|.+.|.+|.|+|.|. +|++||.|++++||.+....+
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcc
Confidence 14667889999999999999986 888999999999999999999
Q ss_pred EEEEeccC----ceeeecCC---------CEEEEEecCCeEEEEecc------------cceEEEeecCCCCEEEEEeCC
Q 004594 676 AGVFKVCN----LMPIILKG---------CFILNSIFNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 676 v~~~~~~~----~i~~s~~g---------~~L~sgs~Dg~v~vh~~~------------v~~l~vs~~~~~~~laSgs~D 730 (743)
.+.+..|+ .+.++|+| ..+++++.|++|++|+.. ..+.++.+.+++.++++|+.|
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCC
Confidence 88888876 25566654 459999999999998753 234566666678999999999
Q ss_pred CcEEEeCCC
Q 004594 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
|.|.+|++.
T Consensus 474 g~V~iws~~ 482 (524)
T KOG0273|consen 474 GCVHIWSTK 482 (524)
T ss_pred CeeEecccc
Confidence 999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=243.97 Aligned_cols=243 Identities=19% Similarity=0.235 Sum_probs=191.7
Q ss_pred ccccCCCCCceEEEEecCCC----cc-------cccc----Ccccc-CCCCEEEEeeCCCcEEEEecCCCCCCCCccccc
Q 004594 473 TLQHNGASSKSLLMFGSDGM----GS-------LTSA----PNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~----~~-------l~~~----~~~l~-d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~ 536 (743)
.+...++.+..+.+|..... .. +... ...+. ....++++++.|++|++|+...+
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---------- 565 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---------- 565 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----------
Confidence 44556778888889975421 00 0000 00111 23578999999999999965322
Q ss_pred cccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEE
Q 004594 537 AEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614 (743)
Q Consensus 537 ~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~S 614 (743)
..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||++++..+..+..| ..|.++.|++ ++.+|++
T Consensus 566 ---------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 566 ---------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred ---------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 45677889999999999997 7899999999999999999999888888755 6799999964 6899999
Q ss_pred EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC------eEEEEEeccC----c
Q 004594 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SCAGVFKVCN----L 684 (743)
Q Consensus 615 gs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg------~~v~~~~~~~----~ 684 (743)
|+.|++|++||+++...++..+.+|...|.++.|. ++. +|++++.|++|+|||++.+ .++..+.+|. .
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998765677888999999999997 444 6779999999999999853 5677887764 3
Q ss_pred eeeecCCCEEEEEecCCeEEEEeccc-------------------------ceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 685 MPIILKGCFILNSIFNCYLLLHRIFL-------------------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 685 i~~s~~g~~L~sgs~Dg~v~vh~~~v-------------------------~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
+.+++++.+|++|+.|+.|.+|+... .+.++++.+++..|++|+.||.|++|+
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 67889999999999999999987421 134445555678999999999999997
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=229.64 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=155.5
Q ss_pred EEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEccCCCCEEEEEEcCCC-CEEEEEeCCC
Q 004594 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~-------~~~~~l~~H~~~V~~l~fspd~-~~L~Sgs~Dg 619 (743)
..+.+|++.|++++|+| ++.+|++|+.|++|+|||+.+. +++..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6899999999
Q ss_pred eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc-----eeeecCCCEE
Q 004594 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGCFI 694 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~~L 694 (743)
+|+|||++++. ++..+.+|...|.+++|+|++. +|++++.|++|+|||+++++.+..+.+|.. +.|.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4788899999999999999986 777999999999999999999888887642 4567787777
Q ss_pred EEEe----cCCeEEEEecccc--------------eEEEeecCCCCEEEEEe-CCCcEEEeCC
Q 004594 695 LNSI----FNCYLLLHRIFLN--------------LLSVSEWCNPDEISTSS-WKDSCCSHRE 738 (743)
Q Consensus 695 ~sgs----~Dg~v~vh~~~v~--------------~l~vs~~~~~~~laSgs-~DG~V~iWd~ 738 (743)
++++ .|+.|++|+.... .+...+..++..|++++ .|+.|++||-
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 7654 4789999986421 11112233466777777 5999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=228.35 Aligned_cols=214 Identities=15% Similarity=0.212 Sum_probs=187.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
...++.+++.|+.|++|+.-++ ...++++.+|..+|.+++|+.+|..|+|++.|+.|++||+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3479999999999999966442 2578899999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~-~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
++|+++..|+. ...++|+.|+|++ +.|++|+.|+.|+.||+++++. +..+..|-+.|..+.|-++|.. +++.++|+
T Consensus 288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~r-FissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRR-FISSSDDK 364 (503)
T ss_pred ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCce-EeeeccCc
Confidence 99999988853 4568999999987 8899999999999999999775 8889999999999999999875 55889999
Q ss_pred cEEEEECCCCeEEEEEec-----cCceeeecCCCEEEEEecCCeEEE-----------------EecccceEEEeecCCC
Q 004594 664 EIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLL-----------------HRIFLNLLSVSEWCNP 721 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~L~sgs~Dg~v~v-----------------h~~~v~~l~vs~~~~~ 721 (743)
+|+||+.+.+..+..+.. ...+..+|.+.+++.-+.|..|.+ |......+.+.+.+++
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999998876654432 245778899999999999998888 6666777888888889
Q ss_pred CEEEEEeCCCcEEEeCCC
Q 004594 722 DEISTSSWKDSCCSHREL 739 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~~ 739 (743)
.+|++|+.||.|.+||-+
T Consensus 445 ~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred CeEEeecCCccEEEeech
Confidence 999999999999999854
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=212.91 Aligned_cols=245 Identities=18% Similarity=0.222 Sum_probs=200.9
Q ss_pred ccccCCCCCceEEEEecCCCcc-ccc-------cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCce
Q 004594 473 TLQHNGASSKSLLMFGSDGMGS-LTS-------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~-l~~-------~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~ 544 (743)
.....|+.+.++.+|....... +.. ....+.+...|+.+++.|+.|+.|+....
T Consensus 164 ~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n------------------ 225 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN------------------ 225 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh------------------
Confidence 3445677888888888765421 111 11124555689999999999999955333
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
+.++.+.+|-+.|+|++.+|.-..|+||+.|.++||||+++...+.++.||+..|..|.+.|....++||+.|++|++|
T Consensus 226 -kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 226 -KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred -hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 5677889999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeee---cCCCEEEEEecCC
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPII---LKGCFILNSIFNC 701 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s---~~g~~L~sgs~Dg 701 (743)
|++.++. ..++..|...|.+++.+|. .++||+++.| .|+-|++..|+-+..+.+++.+... ....++++|+++|
T Consensus 305 Dl~agkt-~~tlt~hkksvral~lhP~-e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 305 DLRAGKT-MITLTHHKKSVRALCLHPK-ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred eeccCce-eEeeecccceeeEEecCCc-hhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 9999776 7788889999999999998 4588899988 6999999999988888888765433 3455889999999
Q ss_pred eEEEEeccc--------------------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 702 YLLLHRIFL--------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 702 ~v~vh~~~v--------------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.+.+|+-.. ..++.+++..+..|++|..|.+|++|.+.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999976221 22455566668899999999999999754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=228.90 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=152.9
Q ss_pred eeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEEccCCCCEEEEEEcCCCCE-EEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATS 615 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg~V~IWd~~t~~--------~~~~l~~H~~~V~~l~fspd~~~-L~Sg 615 (743)
..+..+.+|.+.|.+|+|+|+ +.+||||+.|++|+|||+.++. ++..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 457788999999999999996 7899999999999999997532 34567899999999999998765 5799
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----ee-----
Q 004594 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MP----- 686 (743)
Q Consensus 616 s~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~----- 686 (743)
+.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++++..+.+|.. ..
T Consensus 145 S~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999998764 55554 567899999999987 667788899999999999999998888753 11
Q ss_pred eecCCCEEEEEecCC----eEEEEeccc--ceEE------------EeecC-CCCEEEEEeCCCcEEEeCC
Q 004594 687 IILKGCFILNSIFNC----YLLLHRIFL--NLLS------------VSEWC-NPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 687 ~s~~g~~L~sgs~Dg----~v~vh~~~v--~~l~------------vs~~~-~~~~laSgs~DG~V~iWd~ 738 (743)
+++++.+|++++.|+ .|+||+... ..+. ...+. .+.++++|+.|++|++|+-
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 337889999988774 799998652 1111 11111 2557889999999999964
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-24 Score=215.45 Aligned_cols=230 Identities=19% Similarity=0.267 Sum_probs=183.5
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004594 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
.-..|..|+||+ .++++||.||-|.+|+...+.-. +......-..+.-|..+|.
T Consensus 214 Sh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlr-----------KDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 214 SHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLR-----------KDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred cchhheeeCCCC---------------ceEeeccccceeeeehhccchhh-----------hhhhhhhhcceeecccceE
Confidence 355677899988 69999999999999987766321 2222222234556788999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~-~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
|+.|+.|...+|+|+.||+|+||.+++|.|++.|. .|+..|+|+.|+.|+..+++++.|.+||+.-+..++ ++..|.|
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrG 346 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRG 346 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcC
Confidence 99999999999999999999999999999999997 899999999999999999999999999999999876 5999999
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC------ceeee-cCCCEEEEEecCCeEEEEec---
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN------LMPII-LKGCFILNSIFNCYLLLHRI--- 708 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~------~i~~s-~~g~~L~sgs~Dg~v~vh~~--- 708 (743)
|++.|+...|.++|.+++ +++.||+|+||+.++.+|+.+|+... .+... .+...++++....+|.+-..
T Consensus 347 HsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred ccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 999999999999998655 99999999999999999999988531 12222 23445556655666666322
Q ss_pred -----------ccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 709 -----------FLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 709 -----------~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
....++....+.+.++++.+.|+.++-|.
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 22344445555688999999999887663
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-24 Score=217.44 Aligned_cols=240 Identities=20% Similarity=0.312 Sum_probs=194.7
Q ss_pred ccccccCCCCCceEEEEecCCCc---cc---cccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCce
Q 004594 471 RPTLQHNGASSKSLLMFGSDGMG---SL---TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~d~~~---~l---~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~ 544 (743)
+.....+|.++.++.+|...... .| ..+.-++.-.++++++||.|.+|++|+...+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg------------------ 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG------------------ 267 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC------------------
Confidence 34556778899999999876542 12 2222334445689999999999999976555
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~---~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
.++.++-+|.+.|.-+.|+ +.+++|++.|.+|.|||+.+.. +.+.+.||.+.|..|.|+ .++|++++.|.+|
T Consensus 268 -e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 -EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred -chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 5677888999999999996 5699999999999999997644 335678999999999995 5699999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCce--eeecCCCEEEEEec
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLM--PIILKGCFILNSIF 699 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i--~~s~~g~~L~sgs~ 699 (743)
++|++.+.. +++++.+|...|-|+.+. ..++++|+.|.+||+||++.|+|++.+.+|..+ ++--+.+.|++|..
T Consensus 343 kvW~~st~e-fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaY 418 (499)
T KOG0281|consen 343 KVWSTSTCE-FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 418 (499)
T ss_pred EEEecccee-eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccc
Confidence 999999866 599999999999999886 348899999999999999999999999998653 34568889999999
Q ss_pred CCeEEEEeccc---------------------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~v~vh~~~v---------------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
||+|++|+... .++.+.++ ...+++++.|.+|.|||-.
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 99999987431 23333333 5689999999999999854
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=221.53 Aligned_cols=225 Identities=18% Similarity=0.272 Sum_probs=186.4
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+.....++.|+||+ .++++|+.|+.|++|+...+ -.+.++..|+..
T Consensus 349 H~~~i~~l~YSpDg---------------q~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~ 394 (893)
T KOG0291|consen 349 HSDRITSLAYSPDG---------------QLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSG 394 (893)
T ss_pred cccceeeEEECCCC---------------cEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCc
Confidence 34455566666655 69999999999999955443 577899999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCC-CCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRT 635 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~-~~V~~l~fspd~~~L~Sgs~Dg-~V~vWDl~~~~~~l~~ 635 (743)
|+.+.|+..|+.++++|-||+|+.||+..++..++|.... -...||+..|.|.+++.|+.|. .|.||++.++.. +..
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDi 473 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDI 473 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eeh
Confidence 9999999999999999999999999999999999987643 3467899999999999998876 599999999876 899
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----eEEEEEeccCceeeecCCCEEEEEecCCeEEEEeccc-
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg----~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v- 710 (743)
+.||+++|.+++|+|++. +|+|+|.|.+||+||+-.. +.+........++|.|+|+.|++.+.||.|.+|+...
T Consensus 474 LsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred hcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 999999999999999987 8889999999999998543 2333333445688999999999999999999976431
Q ss_pred -------------------------------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 711 -------------------------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 -------------------------------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
....++...++..|++||....|++|+-
T Consensus 553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 1123445556889999999999999964
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=221.57 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=180.5
Q ss_pred CEEEEeeCC-CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D-~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.|++-|+.- |-+.+|..... ..+-...+|...|+|++++|||.+||||++||+|+|||..
T Consensus 320 DWiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred CEEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 678777643 56777743221 3455667999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC-
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS- 663 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~-~~V~sl~fspdg~~llaSgs~Dg- 663 (743)
++-|+.+|.+|+..|+.+.|+..++.+++++.||+||.||+...+ +.++|.... -...+|+..|.|. ++++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 999999999999999999999999999999999999999998755 478887543 3456788889887 666777664
Q ss_pred cEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEeecCCCCEEEEE
Q 004594 664 EIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l~vs~~~~~~~laSg 727 (743)
.|.||++.+|+.+..+.+|.. ++|++.+..|++++.|.+|++|+... .++.+.+.+++..|+++
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 599999999999999999854 56899999999999999999998653 35677777889999999
Q ss_pred eCCCcEEEeCCC
Q 004594 728 SWKDSCCSHREL 739 (743)
Q Consensus 728 s~DG~V~iWd~~ 739 (743)
.-||.|-+||..
T Consensus 539 TldgqItf~d~~ 550 (893)
T KOG0291|consen 539 TLDGQITFFDIK 550 (893)
T ss_pred EecceEEEEEhh
Confidence 999999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=236.39 Aligned_cols=232 Identities=14% Similarity=0.205 Sum_probs=178.2
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+..+.|++++ +++++|+.|++|++|+........ .. ....+..+. +...
T Consensus 482 ~~~~V~~i~fs~dg---------------~~latgg~D~~I~iwd~~~~~~~~----------~~-~~~~~~~~~-~~~~ 534 (793)
T PLN00181 482 SSNLVCAIGFDRDG---------------EFFATAGVNKKIKIFECESIIKDG----------RD-IHYPVVELA-SRSK 534 (793)
T ss_pred CCCcEEEEEECCCC---------------CEEEEEeCCCEEEEEECCcccccc----------cc-cccceEEec-ccCc
Confidence 34456667777766 689999999999999754321000 00 001122233 3457
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 558 V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
|.+++|++ ++.+|++|+.|++|+|||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++. ++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~ 613 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGT 613 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEE
Confidence 99999987 578999999999999999999999999999999999999997 78899999999999999999765 4777
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~-~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+..+ ..|.++.|++....+|++|+.|+.|++||++++. .+..+.+|. .+.|. ++.+|++++.|++|++|+...
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 7654 6799999976545688899999999999999865 455666653 24454 788999999999999998641
Q ss_pred ----------c--------eEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 711 ----------N--------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ----------~--------~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
. ...+....++.+|++|+.|++|++|+..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 0 1123344447799999999999999853
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-23 Score=213.87 Aligned_cols=226 Identities=19% Similarity=0.279 Sum_probs=189.5
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+..+.|+|+. .++++++.|.+|++|+...+ .....+++|++.|
T Consensus 108 r~~vt~v~~hp~~---------------~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv 153 (406)
T KOG0295|consen 108 RSSVTRVIFHPSE---------------ALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSV 153 (406)
T ss_pred ccceeeeeeccCc---------------eEEEEecCCceEEEEEccch-------------------hhhhhhhccccce
Confidence 3456667777755 57889999999999965444 3467889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
.+|+|+..|++||+++.|-.+++||..+ .++++.+.+|...|.+++|-|.+.+|++++.|.+|+.||+.++. |+.+|.
T Consensus 154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~ 232 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFP 232 (406)
T ss_pred eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEecc
Confidence 9999999999999999999999999987 67788889999999999999999999999999999999999855 699999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeec----------C-----CCEEEEEe
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL----------K-----GCFILNSI 698 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~----------~-----g~~L~sgs 698 (743)
+|...|..++.+.||. ++++|+.|.+|++|-+.++.|...++.|.. ++|.| . +.++.+++
T Consensus 233 ~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 9999999999999986 999999999999999999987777665522 22221 2 35999999
Q ss_pred cCCeEEEEecccce------------EEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 699 FNCYLLLHRIFLNL------------LSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 699 ~Dg~v~vh~~~v~~------------l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
.|++|++|+..... -.+.+.+.+.+|+|+..|+++++||-+.
T Consensus 312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 99999998876432 1223344488999999999999998653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=226.98 Aligned_cols=242 Identities=14% Similarity=0.172 Sum_probs=185.4
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCC----------------------------
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------------------- 528 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~---------------------------- 528 (743)
.....+-++.|++|| +|||+|+.|+.|++|.....+.
T Consensus 265 ah~gaIw~mKFS~DG---------------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~ 329 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG---------------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE 329 (712)
T ss_pred ccCCcEEEEEeCCCC---------------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence 556788889999998 6999999999999997665110
Q ss_pred ----CCCc---------cccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc
Q 004594 529 ----PRDR---------VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (743)
Q Consensus 529 ----~~~~---------~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~ 595 (743)
++.. ...+......+..+++..+.||++.|.+|.||. ..+|++++.|++||||++...+|+++| .
T Consensus 330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~ 407 (712)
T KOG0283|consen 330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-S 407 (712)
T ss_pred ccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-e
Confidence 0000 001112222345577889999999999999995 558999999999999999999999988 5
Q ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 004594 596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 596 H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~ 674 (743)
|.+.|+||+|+| |.++|++|+-|+.||||++.... +........-|+++||.|+|.. .+.|+.+|.+++|+.+..+
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCe
Confidence 999999999999 78999999999999999998744 3444444578999999999874 4589999999999998766
Q ss_pred EEEEEec------------cCceeeec-CCCEEEEEecCCeEEEEeccc--------------ceEEEeecCCCCEEEEE
Q 004594 675 CAGVFKV------------CNLMPIIL-KGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 675 ~v~~~~~------------~~~i~~s~-~g~~L~sgs~Dg~v~vh~~~v--------------~~l~vs~~~~~~~laSg 727 (743)
....+.. .+++.+.| +...+++.+.|..|+|.+... .-+...+..++.+|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 5544331 12344443 333688999999999977621 11333444568999999
Q ss_pred eCCCcEEEeCC
Q 004594 728 SWKDSCCSHRE 738 (743)
Q Consensus 728 s~DG~V~iWd~ 738 (743)
+.|.-|++|+.
T Consensus 565 seDs~VYiW~~ 575 (712)
T KOG0283|consen 565 SEDSWVYIWKN 575 (712)
T ss_pred ecCceEEEEeC
Confidence 99999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=196.63 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=176.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+++++++.|+.|.+|+.... ..+..+..|...|.++.|+++++++++++.|+.|++||++
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETG-------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcc-------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 368899999999999965432 3445567888899999999999999999989999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
+++.+..+..|...|.+++|+|++.++++++.|+.|++||+++... +..+..|...|.+++|+|++..++ +++.|+.|
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i 201 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTI 201 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEE-EecCCCcE
Confidence 8899999999999999999999988888888899999999987554 777888998999999999986555 66669999
Q ss_pred EEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc------------ceEEEeecCCCCEEEEEeC
Q 004594 666 RYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l~vs~~~~~~~laSgs~ 729 (743)
++||++.++.+..+..+ ..+.+++++.++++++.|+.|.+|+... ....+...+++..+++++.
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 99999998888877544 3467889988999988899999987541 1233444444689999999
Q ss_pred CCcEEEeC
Q 004594 730 KDSCCSHR 737 (743)
Q Consensus 730 DG~V~iWd 737 (743)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999997
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=219.76 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=165.1
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
..+...+..+.|+|... .+|++|+.|++|++|+....... ......+..+.+|.
T Consensus 72 ~GH~~~V~~v~fsP~d~--------------~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH~ 125 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDP--------------QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGHT 125 (493)
T ss_pred eCCCCCEEEEEEcCCCC--------------CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCCC
Confidence 34456777888887221 58999999999999977543110 01123566788999
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 556 SKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 556 ~~V~~i~fspdg-~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
..|.+|+|+|++ .+|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.. +.
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~ 204 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VS 204 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EE
Confidence 999999999975 6999999999999999999999999999999999999999999999999999999999998764 77
Q ss_pred EEecCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCe-EEEEEeccC-----ceeeecCCCEEEEEe-cCCeE
Q 004594 635 TFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKVCN-----LMPIILKGCFILNSI-FNCYL 703 (743)
Q Consensus 635 ~l~gh~~~-V~sl~fspdg~~llaSg---s~Dg~IrvWDl~tg~-~v~~~~~~~-----~i~~s~~g~~L~sgs-~Dg~v 703 (743)
.+.+|.+. +..+.|.+++..++++| +.|+.|++||+++.. ++..+..+. ...+++++.+|++++ .|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 88888765 45678999877666544 358999999999754 333333221 134778999999887 59999
Q ss_pred EEEecccce
Q 004594 704 LLHRIFLNL 712 (743)
Q Consensus 704 ~vh~~~v~~ 712 (743)
++|+.....
T Consensus 285 riwdl~~~~ 293 (493)
T PTZ00421 285 RCFELMNER 293 (493)
T ss_pred EEEEeeCCc
Confidence 999876443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=203.81 Aligned_cols=196 Identities=19% Similarity=0.300 Sum_probs=169.8
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~-t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~v 623 (743)
..++..+.+|++.|+++.|+|+|.+||||+.|..|.+|++. ..+-..++++|+++|..+.|.+|+..|++++.|++|+.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 34556678999999999999999999999999999999954 45566788999999999999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEecC
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~D 700 (743)
||+++++. ++.+++|.+.|++++-+.-|..+++|++.|+++|+||+|+..+++++.. .+.+.|.-.+.-+.+|+-|
T Consensus 117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence 99999775 8999999999999996667888999999999999999999999888843 2567888999999999999
Q ss_pred CeEEEEeccc------------ceEEEeecCCCCEEEEEeCCCcEEEeCCCcc
Q 004594 701 CYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 701 g~v~vh~~~v------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~~l 741 (743)
+.|++|+..- .++.++....+.++.+-+-|.+|++||-+++
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 9999988621 2333444445789999999999999997764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=193.86 Aligned_cols=226 Identities=25% Similarity=0.374 Sum_probs=187.2
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+.++.|++++ +++++++.|+.+.+|+.... .....+..|...
T Consensus 8 h~~~i~~~~~~~~~---------------~~l~~~~~~g~i~i~~~~~~-------------------~~~~~~~~~~~~ 53 (289)
T cd00200 8 HTGGVTCVAFSPDG---------------KLLATGSGDGTIKVWDLETG-------------------ELLRTLKGHTGP 53 (289)
T ss_pred cCCCEEEEEEcCCC---------------CEEEEeecCcEEEEEEeeCC-------------------CcEEEEecCCcc
Confidence 34577888888875 58899999999999965433 145566789899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
|.++.|+|++++|++++.|+.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.. .+..+.
T Consensus 54 i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 132 (289)
T cd00200 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLR 132 (289)
T ss_pred eeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEec
Confidence 9999999999999999999999999999888888899999999999999998888888889999999999755 477788
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc---
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL--- 710 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v--- 710 (743)
.|...|.+++|+|++. ++++++.|+.|++||+++++++..+..+. .+.+++++.++++++.|+.|.+|+...
T Consensus 133 ~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 133 GHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred cCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 8999999999999854 66677779999999999988888887653 477889999999999999999987541
Q ss_pred ---------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 711 ---------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ---------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
....+...+++.++++++.||.|++|+-.
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 12233344445677777779999999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=208.43 Aligned_cols=213 Identities=20% Similarity=0.292 Sum_probs=176.1
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004594 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (743)
Q Consensus 508 ~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~ 587 (743)
.+++|+.|++|.+| .+..++...+++.|+.-|.|++|+|||.+|||++.||+|.|||-.++
T Consensus 162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 46899999999999 78888899999999999999999999999999999999999999999
Q ss_pred eEEEEEc---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---------------------------------
Q 004594 588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------------- 631 (743)
Q Consensus 588 ~~~~~l~---~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~--------------------------------- 631 (743)
+.+..+. +|.+.|+++.|+||+..|+|++.|.+++|||+.+.+.
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9999998 8999999999999999999999999999999875432
Q ss_pred ---------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE-------------------------
Q 004594 632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------------------------- 677 (743)
Q Consensus 632 ---------~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~------------------------- 677 (743)
.+.++.||...|+++..+|++. .|++|+.||.|.-||+.+|.+-+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 2445669999999999999986 56699999999999987654210
Q ss_pred ------EEec------------------------------------------------------cCceeeecCCCEEEEE
Q 004594 678 ------VFKV------------------------------------------------------CNLMPIILKGCFILNS 697 (743)
Q Consensus 678 ------~~~~------------------------------------------------------~~~i~~s~~g~~L~sg 697 (743)
.+.. ...++++|++.++++|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 0000 0225677889999999
Q ss_pred ecCCeEEEEeccc--------------ceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 698 IFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 698 s~Dg~v~vh~~~v--------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+.|+.|.++.... ....+...++..+|++|...+.|.+||-..
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 9999998855432 123444555578999999999999997543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=207.19 Aligned_cols=212 Identities=16% Similarity=0.227 Sum_probs=174.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEE
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLW 582 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp---dg~~LaSgs~Dg~V~IW 582 (743)
.+++.+|++||.+++|+. ++ +....+.+|+++|.+++|.- ....|++++.|.++++|
T Consensus 115 ~~~IltgsYDg~~riWd~-----------------~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-----------------KG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred CceEEEeecCCeeEEEec-----------------CC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 589999999999999933 23 56788899999999988854 33469999999999999
Q ss_pred ECCCCeE----EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------------CCeeEE
Q 004594 583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------------------------PDYSLR 634 (743)
Q Consensus 583 d~~t~~~----~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~------------------------~~~~l~ 634 (743)
-.+.++. +....||...|-+|+..+++.++++|+.|.+|+||+..+ .+.++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 8876543 233459999999999999999999999999999999321 012577
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEEEEecc--
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIF-- 709 (743)
Q Consensus 635 ~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~vh~~~-- 709 (743)
++.||+.+|.+|.|++. ..+++++.|.+|++||+.++.++..+.+. .++.+++...+|++|+.|..+++|+..
T Consensus 255 tl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred EecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence 89999999999999984 46789999999999999999998888765 446788999999999999999997643
Q ss_pred ---------------cceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 710 ---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 710 ---------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+..+.|++.. ...|++|++|++|++||.+.
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~-~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTN-EFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCC-ceEEEEEecCCeEEEEEecc
Confidence 3344444443 56899999999999999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=218.23 Aligned_cols=237 Identities=20% Similarity=0.248 Sum_probs=188.3
Q ss_pred cccCCCCCceEEEEecCCCcccc-----------ccCccccCCCCE-EEEeeCCCcEEEEecCCCCCCCCccccccccCC
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLT-----------SAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~-----------~~~~~l~d~~~~-l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~ 541 (743)
...+++++.+...|.+.+..-+. ....++...+++ +++|+.|.++.+| +
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~-------------------~ 87 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF-------------------K 87 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE-------------------e
Confidence 45667888888888875442111 111222223333 7789999999999 3
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
.....++.++++|...|+|++...++. +++||+|.+++||.. +++...+.+|+..|+++++-|+. .++||+.|++|
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI 163 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI 163 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence 444567889999999999999887887 999999999999975 46667799999999999999987 89999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceee----ecCCCEEEEE
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPI----ILKGCFILNS 697 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~----s~~g~~L~sg 697 (743)
|+|.-. .++++|.+|++.|..+++-+++. |+||+.||.||+|++ +|+++.++.+|+...+ .++...|+++
T Consensus 164 klWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 164 KLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred eeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 999863 45899999999999999999865 559999999999999 7899999999987544 3678899999
Q ss_pred ecCCeEEEEecccceEE--------EeecC-CCCEEEEEeCCCcEEEeCCC
Q 004594 698 IFNCYLLLHRIFLNLLS--------VSEWC-NPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 698 s~Dg~v~vh~~~v~~l~--------vs~~~-~~~~laSgs~DG~V~iWd~~ 739 (743)
++|+++++|+.....-. |+..+ ..+-|++|+.||.|+||...
T Consensus 238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99999999987743221 21111 26789999999999999543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=192.88 Aligned_cols=213 Identities=21% Similarity=0.290 Sum_probs=178.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.-+|+++++|.+|++|.... ....+++.-..+-|+.+...||++.||+|+.- .||+||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~t-------------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT-------------------GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhc-------------------CeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEcc
Confidence 35889999999999994433 35677777777889999999999999999964 69999998
Q ss_pred CCe--EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 586 SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 586 t~~--~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
+++ ++.+|++|+..|++|.|..+|+.++||+.||++||||++... |-+.| .|.++|++|..+|+-..|| +|..+|
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg 146 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNY-QHNSPVNTVVLHPNQTELI-SGDQSG 146 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhc-cCCCCcceEEecCCcceEE-eecCCC
Confidence 754 689999999999999999999999999999999999999844 34445 4789999999999976555 999999
Q ss_pred cEEEEECCCCeEEEEEecc-----CceeeecCCCEEEEEecCCeEEEEeccc------------------ceEEEeecCC
Q 004594 664 EIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSIFNCYLLLHRIFL------------------NLLSVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v------------------~~l~vs~~~~ 720 (743)
.|+|||+....|.+.+-.. ..+.+.++|.+++.+...|+..+|+... ..+.....++
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 9999999998877766432 4577889999999999999999987542 2334445566
Q ss_pred CCEEEEEeCCCcEEEeCCCcc
Q 004594 721 PDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 721 ~~~laSgs~DG~V~iWd~~~l 741 (743)
..+|+++|.|.+|+||+..-+
T Consensus 227 ~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred CcEEEeecCCceEEEEecCCc
Confidence 889999999999999986654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=202.82 Aligned_cols=209 Identities=20% Similarity=0.241 Sum_probs=163.7
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCC-CCCccc-----cccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCC
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDAD-PRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg 577 (743)
.....+++||+|.++++|....... ...... .........+-.++.++.+|+.+|.+|.|++ ...+++++.|.
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH 281 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH 281 (423)
T ss_pred CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc
Confidence 3457789999999999998332221 111111 1111122344567889999999999999997 77899999999
Q ss_pred cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeE
Q 004594 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 578 ~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~--~~l~~l~gh~~~V~sl~fspdg~~l 655 (743)
+|++||+.++..+.++.+ ...+.|+.++|..++|++|+.|..||+||.+++. .....|.+|.+.|.++.|+|..++.
T Consensus 282 TIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~ 360 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQ 360 (423)
T ss_pred eEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceE
Confidence 999999999999888875 4568999999999999999999999999999865 3456899999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCe-EEEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEeecCCCCEEEEEeCCCcEE
Q 004594 656 LCSCDNNSEIRYWSINNGS-CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 656 laSgs~Dg~IrvWDl~tg~-~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~vs~~~~~~~laSgs~DG~V~ 734 (743)
|++++.|+++++||+|+-+ ++..+.+| ..+++++.+.. +.+|++||.|.+|+
T Consensus 361 ~~S~S~D~t~klWDvRS~k~plydI~~h--------------------------~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWDVRSTKAPLYDIAGH--------------------------NDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred EEEEecCCeEEEEEeccCCCcceeeccC--------------------------CceEEEEeccC-CceEEeccCcceEE
Confidence 9999999999999999866 66666555 22344555443 66888888888888
Q ss_pred EeCCCcc
Q 004594 735 SHRELYL 741 (743)
Q Consensus 735 iWd~~~l 741 (743)
|+...-+
T Consensus 414 i~~~~~~ 420 (423)
T KOG0313|consen 414 IFKGSPI 420 (423)
T ss_pred Eeccccc
Confidence 8876544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=191.96 Aligned_cols=232 Identities=14% Similarity=0.138 Sum_probs=192.3
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+.++.+-+.|+.+| .+|.+++.|.++.+|.+.++ ..+.++.
T Consensus 4 i~l~GHERplTqiKyN~eG---------------DLlFscaKD~~~~vw~s~nG-------------------erlGty~ 49 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG---------------DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYD 49 (327)
T ss_pred cccccCccccceEEecCCC---------------cEEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence 3445567888889999888 59999999999999977665 5678999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--------------------------------------
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------------------------------- 594 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~-------------------------------------- 594 (743)
+|++.|.||..+-+.+.++||+.|.++++||+++|+++..++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 999999999999999999999999999999999887765432
Q ss_pred ---------------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 004594 595 ---------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 595 ---------------~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSg 659 (743)
.+...|+.+-|.|-+.+|++|..||.|..||++++...+.....|...|++|.|+++.. +|+++
T Consensus 130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~ 208 (327)
T KOG0643|consen 130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG 208 (327)
T ss_pred ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence 24456788889999999999999999999999998877888888999999999999976 66699
Q ss_pred eCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCC----------------------------eEEEEec
Q 004594 660 DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC----------------------------YLLLHRI 708 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg----------------------------~v~vh~~ 708 (743)
+.|.+-++||+++-+++++|... +..+++|.-.+++.|+.-. .|+-|-.
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG 288 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG 288 (327)
T ss_pred ccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc
Confidence 99999999999999999999864 4567778777766665322 2233666
Q ss_pred ccceEEEeecCCCCEEEEEeCCCcEEE--eCCCcc
Q 004594 709 FLNLLSVSEWCNPDEISTSSWKDSCCS--HRELYL 741 (743)
Q Consensus 709 ~v~~l~vs~~~~~~~laSgs~DG~V~i--Wd~~~l 741 (743)
.++.+++.+. +...+||+.||.|++ +|.+|+
T Consensus 289 PINsvAfhPd--GksYsSGGEDG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 289 PINSVAFHPD--GKSYSSGGEDGYVRLHHFDSNYF 321 (327)
T ss_pred CcceeEECCC--CcccccCCCCceEEEEEeccchh
Confidence 7777777665 779999999999988 465554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=219.78 Aligned_cols=209 Identities=20% Similarity=0.274 Sum_probs=178.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE-eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+.++.+|+.|.++++|+. .+...+.. +.+|.+.|.+++|...+.++++|+.|++++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~~~-------------------~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDL-------------------NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEeec-------------------ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 578999999999999944 33355565 9999999999999877889999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
.++.+..++.+|.+.|.|+...+ .++++|+.|.+|+||++.++. ++.++.+|...|.++..+ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998754 578889999999999999866 599999999999999998 237889999999
Q ss_pred EEEEECCCCeEEEEEeccCc--eeeecCC-CEEEEEecCCeEEEEecccc--eE---------EEeecCCCCEEEEEeCC
Q 004594 665 IRYWSINNGSCAGVFKVCNL--MPIILKG-CFILNSIFNCYLLLHRIFLN--LL---------SVSEWCNPDEISTSSWK 730 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~--i~~s~~g-~~L~sgs~Dg~v~vh~~~v~--~l---------~vs~~~~~~~laSgs~D 730 (743)
|+|||+++++|++++.+|+. .++..++ ..+++|+.|++|++|+.... ++ ..........+++++.|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence 99999999999999999865 3455677 99999999999999997765 11 11112226789999999
Q ss_pred CcEEEeCCC
Q 004594 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
++|++||..
T Consensus 433 ~~Ik~WD~~ 441 (537)
T KOG0274|consen 433 GTIKLWDAE 441 (537)
T ss_pred ccEEEeecc
Confidence 999999754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-22 Score=222.53 Aligned_cols=189 Identities=25% Similarity=0.309 Sum_probs=156.6
Q ss_pred eeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------
Q 004594 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 586 (743)
Q Consensus 546 ~~~~~l~-~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t-------------------------------------- 586 (743)
.....+. +|.+.|.|+.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344556 8999999999999999999999999999997643
Q ss_pred ----------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004594 587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (743)
Q Consensus 587 ----------------------~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~ 644 (743)
.++++.|.||++.|.+|.|+.+ .+|+|++.|.|||+|++.. ..|+.+|. |.+.|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-cceeeEEe-cCCeeE
Confidence 0123345689999999999975 6899999999999999996 55799997 999999
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEecCCeEEEEecc------------
Q 004594 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF------------ 709 (743)
Q Consensus 645 sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~Dg~v~vh~~~------------ 709 (743)
||+|+|..+++|++|+-||.||||++...+.+..... .+.+++.|+|.+.++|+.+|..++....
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999999888999999999999999998877766554 3678999999999999999999883322
Q ss_pred ----------cceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 ----------v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
|+.+.+.+.. ...|+..+.|..|+|+|.
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~-~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGD-PDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccCccccCceeeeeEecCCC-CCeEEEecCCCceEEEec
Confidence 2333333332 457889999999999987
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=207.37 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=161.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
-.+++++.|+.|++|+...... .+....+...+.+|++.|..++|++ +..+|+++++|+.+.|||++
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 4678999999999998765521 1334566788999999999999999 67799999999999999999
Q ss_pred --CCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 586 --t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
+.++.....+|++.|.|++|+| ++..||||+.|++|++||+|+...++.++.+|...|..|.|+|..+.+|++++.|
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 5667778889999999999999 5778899999999999999999989999999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 663 SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.+.|||+..-..... .....-.|.+-+++-|+ |...+.-+.|++.. +-.|+|.+.|+.+.||+..
T Consensus 339 ~rl~vWDls~ig~eq~---~eda~dgppEllF~HgG-------H~~kV~DfsWnp~e-PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQS---PEDAEDGPPELLFIHGG-------HTAKVSDFSWNPNE-PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcEEEEeccccccccC---hhhhccCCcceeEEecC-------cccccccccCCCCC-CeEEEEecCCceEEEeecc
Confidence 9999999974211110 00001112222222221 33334455555443 5667777777777777654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=216.65 Aligned_cols=241 Identities=20% Similarity=0.238 Sum_probs=193.0
Q ss_pred ccccCCCCCceEEEEecCCCccc----cccCcc-----ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCc
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSL----TSAPNQ-----LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l----~~~~~~-----l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~ 543 (743)
.....++.+..+..|+......+ ...... +...+.++++|+.|.++++|+...+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg----------------- 281 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG----------------- 281 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-----------------
Confidence 34455666777777776654221 122222 1223689999999999999964443
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~v 623 (743)
...+.+.+|.+.|.|+.. ...++++|+.|.+|+||++.++.++.++.+|.+.|.||..+ +.++++|+.|++|+|
T Consensus 282 --~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 282 --ECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKV 355 (537)
T ss_pred --cEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEE
Confidence 678889999999999987 45678899999999999999999999999999999999997 789999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEeccCcee--eecCCCEEEEEecC
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNLMP--IILKGCFILNSIFN 700 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~~~i~--~s~~g~~L~sgs~D 700 (743)
||+.+.. |+.++.+|...|.++.+... ..+++|+.|++|++||++++ +|+.++.+|..+. +...+.+|++++.|
T Consensus 356 W~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 356 WDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSAD 432 (537)
T ss_pred EEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEecccc
Confidence 9999755 69999999999999988875 46779999999999999999 9999999987755 45789999999999
Q ss_pred CeEEEEecccce----------EEEeecCC-CCEEEEEeCCCcEEEeCCC
Q 004594 701 CYLLLHRIFLNL----------LSVSEWCN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 701 g~v~vh~~~v~~----------l~vs~~~~-~~~laSgs~DG~V~iWd~~ 739 (743)
++|++|+..... ..+..-.. ...+++++.||++++||-+
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc
Confidence 999999754211 11111111 2689999999999999754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=198.10 Aligned_cols=218 Identities=16% Similarity=0.236 Sum_probs=170.3
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004594 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
...+...+++-.|++|| .++++|+.|..|++++.+...... ................++++..|
T Consensus 108 lt~HK~~cR~aafs~DG---------------~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDG---------------SLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred EeecccceeeeeeCCCC---------------cEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhc
Confidence 33455678888999998 599999999999999776332111 11111111112223568899999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~--~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~ 632 (743)
.+.|+++.|+|....|++|+.|++|++||+......+.++ .....|.++.|+|.|.+|+.|....++|+||+.+-.+.
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 9999999999999999999999999999987533322222 24578999999999999999999999999999985542
Q ss_pred EEE--EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-c-----CceeeecCCCEEEEEecCCeEE
Q 004594 633 LRT--FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C-----NLMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 633 l~~--l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-~-----~~i~~s~~g~~L~sgs~Dg~v~ 704 (743)
+.. -..|++.|++|.+++.+. ++++++.||.|++||--+++|+.++.. | .+..|..+|+||++.+.|.+++
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred eecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 222 236899999999999986 778999999999999999999988863 2 2245889999999999999999
Q ss_pred EEecc
Q 004594 705 LHRIF 709 (743)
Q Consensus 705 vh~~~ 709 (743)
+|...
T Consensus 331 LWEi~ 335 (430)
T KOG0640|consen 331 LWEIS 335 (430)
T ss_pred eeeec
Confidence 97643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=204.36 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=171.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd 583 (743)
.++++++|...|.|++|+. .+-..++.+.+|+.+|..+.|+| ++..|++|++|+++++||
T Consensus 79 DG~LlaaGD~sG~V~vfD~-------------------k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDM-------------------KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred CCeEEEccCCcCcEEEecc-------------------ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 3589999999999999942 11234567789999999999999 667889999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
+.+......+.+|++.|.|.+|+|- +..++||+.||+||+||++.....+.++. |..+|.++.|-|.|. ++++|+ .
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-G 216 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAG-G 216 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcC-C
Confidence 9998877789999999999999994 66899999999999999998755466665 899999999999976 677777 4
Q ss_pred CcEEEEECCCCe-EEEEEe----ccCceeeecCCCEEEEEecCCeEEEE-----------ecccceEEEeecCCCCEEEE
Q 004594 663 SEIRYWSINNGS-CAGVFK----VCNLMPIILKGCFILNSIFNCYLLLH-----------RIFLNLLSVSEWCNPDEIST 726 (743)
Q Consensus 663 g~IrvWDl~tg~-~v~~~~----~~~~i~~s~~g~~L~sgs~Dg~v~vh-----------~~~v~~l~vs~~~~~~~laS 726 (743)
..|||||+-+|. .+.... ..+++.+..++..|++|+.|+.|++. +.+..++++...++...++.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEE
Confidence 589999999654 333333 23557777899999999999999994 44555666666666789999
Q ss_pred EeCCCcEEEe
Q 004594 727 SSWKDSCCSH 736 (743)
Q Consensus 727 gs~DG~V~iW 736 (743)
|-.||.+.+=
T Consensus 297 GmsnGlv~~r 306 (487)
T KOG0310|consen 297 GMSNGLVSIR 306 (487)
T ss_pred ecccceeeee
Confidence 9999988654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=195.52 Aligned_cols=155 Identities=20% Similarity=0.312 Sum_probs=139.1
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++++|+-|....+|....+ .....+.+|++.|+|+.|+.||.+||||+-+|.|+||..
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred CCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 3389999999999999966554 356778899999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
.++.....+.+.-+.|.=+.|||.+..|+.|+.||.|.+|.+.+... .+.+.||..++++=+|.|+|++ ++++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKR-ILTGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCce-EEEEecCce
Confidence 99998888876677788899999999999999999999999998644 7899999999999999999885 458999999
Q ss_pred EEEEECCCCeEEEEEe
Q 004594 665 IRYWSINNGSCAGVFK 680 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~ 680 (743)
|++||+.++.+++.+.
T Consensus 214 i~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEEecCCCceeEEec
Confidence 9999999998887776
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=214.14 Aligned_cols=224 Identities=16% Similarity=0.243 Sum_probs=181.1
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+..+++-+.|+|.. .++++|+.|-.|++|. -..-+.+.++.+|-+.
T Consensus 50 HdGpVRgv~FH~~q---------------plFVSGGDDykIkVWn-------------------Yk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQ---------------PLFVSGGDDYKIKVWN-------------------YKTRRCLFTLLGHLDY 95 (1202)
T ss_pred cCCccceeeecCCC---------------CeEEecCCccEEEEEe-------------------cccceehhhhccccce
Confidence 44456666666655 6999999999999993 3344677788999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------- 630 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~------- 630 (743)
|..+.|++.-.+|+++|+|-+|+||+..+.+++.+++||...|.|..|+|....++|++.|-+|||||+..-+
T Consensus 96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985211
Q ss_pred ---------------------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe------EEEEEeccC
Q 004594 631 ---------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKVCN 683 (743)
Q Consensus 631 ---------------------~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~------~v~~~~~~~ 683 (743)
.....+.||...|+-++|||.-+ +++||++|+.|++|.+..-+ |...+...+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 11356789999999999999976 88899999999999987432 222223335
Q ss_pred ceeeecCCCEEEEEecCCeEEEEecccce------------EEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 684 LMPIILKGCFILNSIFNCYLLLHRIFLNL------------LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 684 ~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~------------l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
++-|+|.-..|++.++|++|+||+..-.. ..+... +..-++.+++|+-+.+|.
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laah-P~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAH-PELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEec-CCcceeeeecCCceEEEE
Confidence 67799999999999999999999865321 112222 245577788888777774
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=202.07 Aligned_cols=232 Identities=16% Similarity=0.232 Sum_probs=176.6
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
....++..+-.+.|+++| +++|+++.|.+.-+|....+ ..++.++++.+
T Consensus 219 il~~htdEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlvg 267 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNG---------------KYLASASKDSTAIIWIVVYD----------------VHFKLKKTLVG 267 (519)
T ss_pred hHhhCCCcEEEEEEcCCC---------------eeEeeccCCceEEEEEEecC----------------cceeeeeeeec
Confidence 444566677788899988 69999999999999965443 12678899999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-- 630 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~-~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~-- 630 (743)
|..+|.-|.||||.++|++|+.|..+++||+.++.....+. +|...+.+++|.||+..+++|+.|++|..||++...
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence 99999999999999999999999999999999999887664 346889999999999999999999999999986321
Q ss_pred --------------------eeEEE------------------EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 631 --------------------YSLRT------------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 631 --------------------~~l~~------------------l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
..+.. +.....+|++++.+.+++.+| ..-.+.+|++||++.
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEE 426 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE-EEcccCeeEEeecch
Confidence 00000 111234577777777776555 344467788888887
Q ss_pred CeEEEEEeccCce------eee-cCCCEEEEEecCCeEEEEecc--------------cceEEEeecCCCCEEEEEeCCC
Q 004594 673 GSCAGVFKVCNLM------PII-LKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEISTSSWKD 731 (743)
Q Consensus 673 g~~v~~~~~~~~i------~~s-~~g~~L~sgs~Dg~v~vh~~~--------------v~~l~vs~~~~~~~laSgs~DG 731 (743)
.+.+..|.+|..- ||. .+..++++|++|+.|+||... +++.+|.+.. +..+||+|.||
T Consensus 427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~-p~m~ASasDDg 505 (519)
T KOG0293|consen 427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD-PEMFASASDDG 505 (519)
T ss_pred hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC-HHHhhccCCCC
Confidence 7777777776432 222 355789999999999997532 2333444332 67899999999
Q ss_pred cEEEeCC
Q 004594 732 SCCSHRE 738 (743)
Q Consensus 732 ~V~iWd~ 738 (743)
+|+||..
T Consensus 506 tIRIWg~ 512 (519)
T KOG0293|consen 506 TIRIWGP 512 (519)
T ss_pred eEEEecC
Confidence 9999954
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=193.34 Aligned_cols=183 Identities=22% Similarity=0.276 Sum_probs=157.0
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
+.+.++|||++|++|+.... ..+.++.+|...|+...|+| ..++|++++.|+++++||++
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~-------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRP-------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred eeEEeeccCCceEeecCCCC-------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 45566699999999954333 56778999999999999999 78899999999999999998
Q ss_pred CCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
.......+..|...|.|+.|+. +...|+||+.|+.||+||+++-+.++..+.+|.-.|..|.|+|....+|++|+.|-+
T Consensus 179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT 258 (311)
T KOG0277|consen 179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT 258 (311)
T ss_pred CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence 7444445899999999999988 677899999999999999999888899999999999999999998889999999999
Q ss_pred EEEEECCC-CeEEEEEeccCceee----e-cCCCEEEEEecCCeEEEEec
Q 004594 665 IRYWSINN-GSCAGVFKVCNLMPI----I-LKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 665 IrvWDl~t-g~~v~~~~~~~~i~~----s-~~g~~L~sgs~Dg~v~vh~~ 708 (743)
+||||... ..++.++..|+.+.+ + .++.++++.+.|+.+.||+.
T Consensus 259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 259 VRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999984 456666666655332 2 26788999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=211.97 Aligned_cols=219 Identities=20% Similarity=0.247 Sum_probs=183.3
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLW 582 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg~V~IW 582 (743)
..+.++++||.|.++++|..+++ ......+....+|+..|.+|+++.. ..+|+++|.|+++++|
T Consensus 375 ~~g~llat~sKD~svilWr~~~~---------------~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNN---------------CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCC---------------cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 34469999999999999966332 2233455667899999999999764 4589999999999999
Q ss_pred ECCCCeE-----E----EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC
Q 004594 583 CTESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (743)
Q Consensus 583 d~~t~~~-----~----~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~ 653 (743)
++...+. + .+...|...|.||+++|+..+|+||+.|++.+||++.... .+.++.||+..|.+|.|+|..
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~d- 517 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKND- 517 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEecccc-
Confidence 9875221 1 1335799999999999999999999999999999999655 488999999999999999985
Q ss_pred eEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEEee
Q 004594 654 DLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSE 717 (743)
Q Consensus 654 ~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l~vs~ 717 (743)
.+++|||.|++|+||.+.+..|+++|.+|++ ..|..+|..|++++.||.+++|+... ++.++..
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~ 597 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV 597 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee
Confidence 4889999999999999999999999999976 56889999999999999999987542 3444555
Q ss_pred cCCCCEEEEEeCCCcEEEeCCC
Q 004594 718 WCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 718 ~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.+....++||+.||.|.+|.|.
T Consensus 598 ~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 598 SPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cCccceeEecCCCeEEEEeecC
Confidence 5556799999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=194.12 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=191.9
Q ss_pred cccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe
Q 004594 472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (743)
Q Consensus 472 ~~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (743)
+..++.+++.+.-+.|+|- .+..-||.+++.|+.-.+- .+.+..-+.+|
T Consensus 7 pl~c~ghtrpvvdl~~s~i------------tp~g~flisa~kd~~pmlr-------------------~g~tgdwigtf 55 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPI------------TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTF 55 (334)
T ss_pred ceEEcCCCcceeEEeccCC------------CCCceEEEEeccCCCchhc-------------------cCCCCCcEEee
Confidence 3456667778888888873 3445689999998775554 45555678999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004594 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~ 631 (743)
.+|++.|..+..+.+..+-|+++.|-+.+|||.-++..+..| .|..-|.+++|+.|.++|+||+.++.+||||+..++.
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence 999999999999988889999999999999999999988888 5899999999999999999999999999999999998
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc-----------------------------
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------------------------- 682 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----------------------------- 682 (743)
+...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+..+...
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 8999999999999999998866555 7688999999999999887766421
Q ss_pred --------------CceeeecCCCEEEEEecCCeEEEEec-------------ccceEEEeecCCCCEEEEEeCCCcEEE
Q 004594 683 --------------NLMPIILKGCFILNSIFNCYLLLHRI-------------FLNLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 683 --------------~~i~~s~~g~~L~sgs~Dg~v~vh~~-------------~v~~l~vs~~~~~~~laSgs~DG~V~i 735 (743)
.+..++|+..++++|++|..+...+. ...+.++.+.+++...++||.||+|++
T Consensus 214 sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 214 SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 11234567777888888887766321 223456666666889999999999999
Q ss_pred eCCC
Q 004594 736 HREL 739 (743)
Q Consensus 736 Wd~~ 739 (743)
|...
T Consensus 294 WQt~ 297 (334)
T KOG0278|consen 294 WQTT 297 (334)
T ss_pred EEec
Confidence 9653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=205.83 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=155.9
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+...+..+.|+|+. +.++++|+.|++|++|+...+.... ......+..+.+|...
T Consensus 73 H~~~V~~lafsP~~--------------~~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 73 HTSSILDLQFNPCF--------------SEILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHKKK 127 (568)
T ss_pred CCCCEEEEEEcCCC--------------CCEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCCCc
Confidence 44566777777753 2689999999999999876432100 0001245567899999
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 558 V~~i~fspdg~~-LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. +..+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~tl 205 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSF 205 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEEE
Confidence 999999998875 5799999999999999988777775 667899999999999999999999999999998664 7889
Q ss_pred ecCCCCeEEEE-----EecCCCeEEEEEeCC----CcEEEEECCC-CeEEEEEeccCc----e-ee-ecCCCEEEEEecC
Q 004594 637 TGHSTTVMSLD-----FHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFKVCNL----M-PI-ILKGCFILNSIFN 700 (743)
Q Consensus 637 ~gh~~~V~sl~-----fspdg~~llaSgs~D----g~IrvWDl~t-g~~v~~~~~~~~----i-~~-s~~g~~L~sgs~D 700 (743)
.+|.+.+.+.. |++++..++ +++.| ++|+|||+++ ++++..+..... + .+ .++|.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99987654433 447766555 55545 3799999995 566666544321 1 12 3468899999999
Q ss_pred CeEEEEecccc
Q 004594 701 CYLLLHRIFLN 711 (743)
Q Consensus 701 g~v~vh~~~v~ 711 (743)
++|++|+....
T Consensus 285 ~tIr~~e~~~~ 295 (568)
T PTZ00420 285 GNCRYYQHSLG 295 (568)
T ss_pred CeEEEEEccCC
Confidence 99999987543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=185.90 Aligned_cols=232 Identities=17% Similarity=0.189 Sum_probs=171.7
Q ss_pred ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004594 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (743)
+..+...+.+.++.+.|+|... .+++.||||++|++|...+.. . ... +.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g---------------~-~~~-ka 67 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSG---------------Q-LVP-KA 67 (347)
T ss_pred ceecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCC---------------c-ccc-hh
Confidence 3445566777888999999332 688999999999999765531 0 011 34
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Q 004594 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTEN 628 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~--~L~Sgs~Dg~V~vWDl~~ 628 (743)
...|.++|.|++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|.+++|-+... +|+||++|++|++||.+.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 56799999999999999999999999999999999985 556778999999999988655 899999999999999997
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE-EEEe-----ccCceeeecCCCEEEEEecCCe
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-----VCNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v-~~~~-----~~~~i~~s~~g~~L~sgs~Dg~ 702 (743)
... +.++. -...|++++.-- .+++.+..++.|.+|+|+++... +... -++++++..+....+.|+-+|+
T Consensus 147 ~~p-v~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 147 SNP-VATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred CCe-eeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce
Confidence 553 66655 345677776542 26677777999999999876322 1111 1345666666666688888777
Q ss_pred EEEEecccc--------------------eE---EEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 703 LLLHRIFLN--------------------LL---SVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 703 v~vh~~~v~--------------------~l---~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.++.+... +. .+++.+-.+.|+|+|.||++..||..
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 777322211 11 12333346799999999999999864
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=199.76 Aligned_cols=239 Identities=21% Similarity=0.329 Sum_probs=182.5
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccc-cccCCCceeeeEEEeeCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS-AEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~H~~ 556 (743)
+-.++.++.++++. .++.+++.|++|.-|....+.+.+....+. .....+...++-. +.|..
T Consensus 141 H~~s~~~vals~d~---------------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~k 203 (479)
T KOG0299|consen 141 HQLSVTSVALSPDD---------------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVK 203 (479)
T ss_pred ccCcceEEEeeccc---------------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccc
Confidence 33466667777765 688999999999999876665332222221 0001222222222 48999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
.|.|++.++||++||+|+.|..|.||++++.+++.++.+|.+.|.+++|-.....+++++.|.+|++|++..... +.++
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetl 282 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETL 282 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHH
Confidence 999999999999999999999999999999999999999999999999998888899999999999999998665 7888
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC-c--eeeecCCCEEEEEecCCeEEEEec-----
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-L--MPIILKGCFILNSIFNCYLLLHRI----- 708 (743)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-~--i~~s~~g~~L~sgs~Dg~v~vh~~----- 708 (743)
.||.+.|.+|+-..-+ .++..|+.|+++++|++..... -.|.++. . ++.-.+...+++|+.||.|.+|+.
T Consensus 283 yGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred hCCccceeeechhccc-ceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9999999999877654 3676777999999999954333 3444432 2 223356778999999999999753
Q ss_pred ---------------------ccceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 709 ---------------------FLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 709 ---------------------~v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+++.+++... ..++++|+|+|.|++|..
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKI 409 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEe
Confidence 2333444444 679999999999999964
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=190.28 Aligned_cols=263 Identities=18% Similarity=0.264 Sum_probs=200.4
Q ss_pred ccCCCCCceEEEEecCCCccccc------cCc--cccCCCCEEEEeeCCCcEEEEecC------CCC-----CCC-----
Q 004594 475 QHNGASSKSLLMFGSDGMGSLTS------APN--QLTDMDRFVDDGSLDDNVESFLSP------DDA-----DPR----- 530 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~d~~~~l~~------~~~--~l~d~~~~l~sGs~D~~V~lw~s~------~~~-----~~~----- 530 (743)
.-..+.+.+..+|+.....+|+. +.+ .++..+.++.+++-|++..+|... ... ...
T Consensus 163 ~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 33456677777787766544322 222 255567899999999999999621 110 010
Q ss_pred -Cccccccc---cCCCcee-eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEE
Q 004594 531 -DRVGRSAE---VGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605 (743)
Q Consensus 531 -~~~~~~~~---~~~~~~~-~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~f 605 (743)
+.-.+..+ ..++.+. .++..+.+|.+.|.|+.|-..|..++++++|.+..+||+++++++..+.||....+.++-
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCST 322 (481)
T ss_pred ccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccccc
Confidence 11111111 1122222 356788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecc--
Q 004594 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC-- 682 (743)
Q Consensus 606 spd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~-- 682 (743)
+|..++++|++.|.+.|+||.+..-..+..|.||...|+++.|..+.+ +++|+.|.+|+|||+++. ..+.+++..
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRtdS~ 400 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRTDSP 400 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeecCCc
Confidence 999999999999999999999976667889999999999999998754 679999999999999975 455555543
Q ss_pred -CceeeecCCCEEEEEecCCeEEEEecc------------------cceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 683 -NLMPIILKGCFILNSIFNCYLLLHRIF------------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 683 -~~i~~s~~g~~L~sgs~Dg~v~vh~~~------------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.++++..+..|+...++..|++.+.. +.+.+|....+---|++||.|..|.-|+-+
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 457788888889998888888885543 344555544444578999999999999754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=208.68 Aligned_cols=196 Identities=18% Similarity=0.287 Sum_probs=170.2
Q ss_pred eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 004594 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~ 622 (743)
.+.+.++.+|+..|.++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|+|++.|++|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356788999999999999999 999999999999999999876 899999999999999999999999999999999999
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEe
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSI 698 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs 698 (743)
+||++++.. +..|. ....++++.|+|++.++|++|+.|+.|+.||+|+++.+..+..| ..+.|.+.|+++++.+
T Consensus 284 lwDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 999999775 66665 34568999999999889999999999999999999988777654 5688999999999999
Q ss_pred cCCeEEEEecccce-------------EEEeecCCCCEEEEEeCCCcEEEeCCCccc
Q 004594 699 FNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 699 ~Dg~v~vh~~~v~~-------------l~vs~~~~~~~laSgs~DG~V~iWd~~~l~ 742 (743)
+|++++||+..+.+ -++...+...++++-+.|..|.++.....|
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 99999999865532 233444557899999999999988654433
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=215.82 Aligned_cols=224 Identities=19% Similarity=0.285 Sum_probs=176.1
Q ss_pred CEEEEee--CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 507 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs--~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++|+ .|+.+++|....-. ...........+.+.....|.+.|.|+.|+|||.+||+|++|+.|.||..
T Consensus 26 ~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 26 VKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred eeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 4678999 89999999543221 11111111134567788899999999999999999999999999999987
Q ss_pred CC------------------CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004594 585 ES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 585 ~t------------------~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl 646 (743)
.. .+++.++.+|+..|.+++|+|++.+|++++.|++|.||+.++. .++.++.+|.+.|-.+
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV 177 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence 61 2467889999999999999999999999999999999999998 5699999999999999
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----------CceeeecCCCEEEEEec----CCeEEE-------
Q 004594 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIILKGCFILNSIF----NCYLLL------- 705 (743)
Q Consensus 647 ~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----------~~i~~s~~g~~L~sgs~----Dg~v~v------- 705 (743)
.|+|-|. +||+-+.|++|+||.+.+..+.+.+..+ ..+.|+|||.||++... -.++.|
T Consensus 178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 9999987 7889999999999998877777776643 34789999999998632 112222
Q ss_pred -------EecccceEEEeec---CC--------CC----EEEEEeCCCcEEEeCCC
Q 004594 706 -------HRIFLNLLSVSEW---CN--------PD----EISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 -------h~~~v~~l~vs~~---~~--------~~----~laSgs~DG~V~iWd~~ 739 (743)
|...+.+..+.+. .+ +. .+|+||.|++|-||...
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 6666666655431 11 11 68999999999999763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=192.16 Aligned_cols=243 Identities=14% Similarity=0.158 Sum_probs=188.7
Q ss_pred cccCCCCCceEEEEecCCCcc--------ccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 004594 474 LQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~--------l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~ 545 (743)
....|+.++..++|.-..... .......++.....+++++.|..|++|.....
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~------------------- 293 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS------------------- 293 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence 445566666666666543321 11222224555578899999999999955443
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~--H~~~V~~l~fspd~~~L~Sgs~Dg~V~v 623 (743)
.+...++.|.++|+.+..+|.|.||++++.|++..+.|++++..+..... ..-.+++.+|||||.+|.+|..|+.|+|
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 23456678999999999999999999999999999999999988766543 2245899999999999999999999999
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-----cCceeeecCCCEEEEEe
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSI 698 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~L~sgs 698 (743)
||+..... +..|.+|+++|.+|.|+.+| ++++++..|+.|++||+|..+...+|.. ...+.|...|.|++.++
T Consensus 374 wdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 99998774 88999999999999999987 5777888899999999999887777654 34578999999999998
Q ss_pred cCCeEEEEe-------c-------ccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 699 FNCYLLLHR-------I-------FLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~v~vh~-------~-------~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.|-.|.+.. . ......+.+.....+++++|.|..++++.
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 887777733 1 11222334444467899999999988864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=186.00 Aligned_cols=212 Identities=16% Similarity=0.222 Sum_probs=166.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLW 582 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~--~LaSgs~Dg~V~IW 582 (743)
..+++++|+.|.+|++|+... -.....+-.|.+.|+++.|.+.-. .|++|++||.|.+|
T Consensus 52 s~~~~aSGssDetI~IYDm~k-------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRK-------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cceeEeccCCCCcEEEEeccc-------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 348999999999999995533 256677889999999999998654 89999999999999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 583 d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
++...+++.++++|++.|+.+++||.+++-++.+.|+.++.||+.+++.....-.++. -+.|.|+|.|+++++.+. +
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~-~ 189 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGR-N 189 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEEEec-c
Confidence 9999999999999999999999999999999999999999999998775333322333 344999999986664443 4
Q ss_pred CcEEEEECCCCeEEEEEecc--CceeeecCCCEEEEEecCCeEEEEecc--------------cceEEEeecCCCCEEEE
Q 004594 663 SEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIF--------------LNLLSVSEWCNPDEIST 726 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~L~sgs~Dg~v~vh~~~--------------v~~l~vs~~~~~~~laS 726 (743)
.|-||.+.+.+....+... ..+..-.++.+|++|++|+.|++++.. +..+.+-..+...+|+|
T Consensus 190 -~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred -EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 6999999876655444433 223334578899999999999997654 33333333334579999
Q ss_pred EeCCCcEEEeCCC
Q 004594 727 SSWKDSCCSHREL 739 (743)
Q Consensus 727 gs~DG~V~iWd~~ 739 (743)
+|.||.|++||-.
T Consensus 269 aSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 269 ASSDGFIKVWDID 281 (362)
T ss_pred eccCceEEEEEcc
Confidence 9999999999854
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=180.05 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=166.1
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
+..+.+..|.++|..+.|+-||++.++++.|++|++|+...+.+++++.+|...|.+++.+.|...|++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEEEecc--CceeeecCCCEEEEEecCC
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKVC--NLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg--~~v~~~~~~--~~i~~s~~g~~L~sgs~Dg 701 (743)
+.+++. ++.|.+|.+.|+.+.|+.+.. ++++|+.|.+||+||.++. +++..+... ....+...+-.|+.|+.||
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred cccCee-eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 999886 899999999999999998854 8889999999999999864 566655532 2355677888999999999
Q ss_pred eEEEEecccc----------eEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 702 YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 702 ~v~vh~~~v~----------~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+++..++... +.++++..++..++.++-|+++++-|.
T Consensus 166 tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence 9999765432 334555566889999999999998775
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-21 Score=194.82 Aligned_cols=223 Identities=16% Similarity=0.243 Sum_probs=184.1
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCCCe
Q 004594 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKV 558 (743)
Q Consensus 480 ~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V 558 (743)
..+.|+.|+.|. ..+++|+.||.|++|....+ ..++.|. .|+..|
T Consensus 264 ~aVlci~FSRDs---------------EMlAsGsqDGkIKvWri~tG-------------------~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 264 DAVLCISFSRDS---------------EMLASGSQDGKIKVWRIETG-------------------QCLRRFDRAHTKGV 309 (508)
T ss_pred cceEEEeecccH---------------HHhhccCcCCcEEEEEEecc-------------------hHHHHhhhhhccCe
Confidence 356667777655 68999999999999955443 2334443 899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
+|+.|+.|+..|++++.|.+|+|.-+.+|+++..|.||+..|....|.++|.++++++.||+|+||+..+.. |+.+|+.
T Consensus 310 t~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~ 388 (508)
T KOG0275|consen 310 TCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKP 388 (508)
T ss_pred eEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999855 5888763
Q ss_pred --CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc-------CceeeecCCCEEEEEecCCeEEEEecc
Q 004594 639 --HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 639 --h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~-------~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
..-+|.++-..|..+.-++.|....+|.|.++. |..++.|... -..+++|.|.|+++.++|+.+......
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEee
Confidence 446789999999887778889999999999987 7788888643 235688999999999999988874322
Q ss_pred c------------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 710 L------------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 v------------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
. .++.+...+....+++-+.||.+++|..
T Consensus 468 sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 468 SGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred cCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 1 1233344455679999999999999974
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=201.68 Aligned_cols=212 Identities=19% Similarity=0.263 Sum_probs=177.6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+.+|+.|..++.|.+|+.. +.+.+..+.+ |...|-|++|+ +..+.+|+.|+.|.++|+
T Consensus 229 G~~LavG~~~g~v~iwD~~-------------------~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVK-------------------EQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCEEEEeecCCeEEEEehh-------------------hccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 3799999999999999543 3345566666 99999999997 778999999999999999
Q ss_pred CCCeEEEE-EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--C
Q 004594 585 ESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--N 661 (743)
Q Consensus 585 ~t~~~~~~-l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs--~ 661 (743)
+..+.... +.+|...|..+.|++|+.++++|+.|..|.|||..... ++..+..|...|.+++|+|--..+||+|+ .
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence 98765554 88999999999999999999999999999999996644 57888999999999999999888999865 7
Q ss_pred CCcEEEEECCCCeEEEEEeccCc---eeeecCCCEEEEE--ecCCeEEEEec------------ccceEEEeecCCCCEE
Q 004594 662 NSEIRYWSINNGSCAGVFKVCNL---MPIILKGCFILNS--IFNCYLLLHRI------------FLNLLSVSEWCNPDEI 724 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~---i~~s~~g~~L~sg--s~Dg~v~vh~~------------~v~~l~vs~~~~~~~l 724 (743)
|++|++||..+++++..+..... +.|++..+-|+++ ..+..|.||+. ...++.+...+++..|
T Consensus 367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred ccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 99999999999999988877644 5688888777765 34567777654 2245566666668899
Q ss_pred EEEeCCCcEEEeCCC
Q 004594 725 STSSWKDSCCSHREL 739 (743)
Q Consensus 725 aSgs~DG~V~iWd~~ 739 (743)
++|+.|.++++|+..
T Consensus 447 ~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 447 VTGAADETLRFWNLF 461 (484)
T ss_pred EEecccCcEEecccc
Confidence 999999999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=202.59 Aligned_cols=249 Identities=16% Similarity=0.205 Sum_probs=196.2
Q ss_pred cccCCCCCceEEEEecCCCccccccCcc--------------ccCCCCEEEEeeCCCcEEEEecCCCCCCCCcccccccc
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQ--------------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~~~~~~--------------l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~ 539 (743)
..+.|+++..+..|+.+......+.... +-.+++.+.++|.|-+|++|....+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------ 106 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------ 106 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence 4677899999999988766432222211 34446789999999999999665541
Q ss_pred CCCceeeeEEEeeCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCe--EE--------EEEc-cCCCCEEEEEEcC
Q 004594 540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFT--VK--------STLE-EHTQWITDVRFSP 607 (743)
Q Consensus 540 ~~~~~~~~~~~l~~H~~~V~~i~f-spdg~~LaSgs~Dg~V~IWd~~t~~--~~--------~~l~-~H~~~V~~l~fsp 607 (743)
...+.+++.|++.|.|+++ -++..++|+||-|+.|.|||+.++. .+ ..+. |+...|++++.++
T Consensus 107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 2356778899999999999 7788999999999999999999762 22 2223 8899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceee
Q 004594 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPI 687 (743)
Q Consensus 608 d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~ 687 (743)
.+..|++|+..+.|++||.++.+. +..+.||+.-|..|..++||..+| ++|.||+||+||+...+|+.++..|....|
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence 999999999999999999999776 788889999999999999998666 888899999999999999999998866444
Q ss_pred e----cCCCEEEEEecCCeEEEEecccc---eEEEeec---------CCCCEEEEEeCCCcEEEeCCCcc
Q 004594 688 I----LKGCFILNSIFNCYLLLHRIFLN---LLSVSEW---------CNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 688 s----~~g~~L~sgs~Dg~v~vh~~~v~---~l~vs~~---------~~~~~laSgs~DG~V~iWd~~~l 741 (743)
+ ++=.++++|+.|+.|..-+.... .+.+... ....-+.++.+|+.|+-|...-+
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 3 66778999999999998554431 1111111 11234588999999999976654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=170.07 Aligned_cols=239 Identities=20% Similarity=0.215 Sum_probs=174.3
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
..+..++.+.|+|.+ .+.+.|+...+.++...++..+.+... +..+-......+.-+.|.+
T Consensus 30 ~dsqairav~fhp~g---------------~lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG---------------GLYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKG 90 (350)
T ss_pred cchhheeeEEecCCC---------------ceEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCc
Confidence 345567777888877 578999999999998665543322111 1112222334455678999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------------------------
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------------------- 586 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t-------------------------------------------------- 586 (743)
.|+|++|+|+|.+|++|+.|++|++.-...
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999999999999999999999999874321
Q ss_pred --CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--C-----CCCeEEEEEecCCCeEEE
Q 004594 587 --FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H-----STTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 587 --~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g--h-----~~~V~sl~fspdg~~lla 657 (743)
+.....+.+|++.|.++ ++-++-.|++|+.|.+||+||++... |+.++.. | .+.|.+|+..|.|+ +|+
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgr-ll~ 247 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLA 247 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcc-eee
Confidence 11112234566666655 22345678999999999999999755 4665532 1 26799999999986 888
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc----------------ceEEEee
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL----------------NLLSVSE 717 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v----------------~~l~vs~ 717 (743)
+|-.|....+||++.++.+..|..|+ .+.|+|..-|+++++.|..|++.+... +++...+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 99999999999999999999998774 478999999999999999999943221 2233333
Q ss_pred cCCCCEEEEEeCCCcEEEeC
Q 004594 718 WCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 718 ~~~~~~laSgs~DG~V~iWd 737 (743)
.+..--+++.+.|.++.+|-
T Consensus 328 h~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWA 347 (350)
T ss_pred cCccceeeeccCcceEEEec
Confidence 33355788999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=196.69 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=176.5
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004594 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
..++.+.|+|... .++.+++|. .+-+|... +....+++......|+
T Consensus 27 ~~vssl~fsp~~P-------------~d~aVt~S~--rvqly~~~-------------------~~~~~k~~srFk~~v~ 72 (487)
T KOG0310|consen 27 NSVSSLCFSPKHP-------------YDFAVTSSV--RVQLYSSV-------------------TRSVRKTFSRFKDVVY 72 (487)
T ss_pred CcceeEecCCCCC-------------CceEEeccc--EEEEEecc-------------------hhhhhhhHHhhcccee
Confidence 4677788888543 246666664 45666321 1123333445566799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
++.|..||++||+|...|.|+|||+.+...++.+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+... ...+.+
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ 151 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSG 151 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecC
Confidence 9999999999999999999999997776677889999999999999995 66788999999999999998664 668999
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecc---CceeeecCCCEEEEEecCCeEEEEeccc----
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL---- 710 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~vh~~~v---- 710 (743)
|++.|.+.+|+|-.+++++|||.||+||+||++.. ..+.++.+. ..+.+.|.|..|++++.+ .|++|+...
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL 230 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee
Confidence 99999999999998899999999999999999987 666677654 446788999999988765 688887541
Q ss_pred ---------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 711 ---------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 ---------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.+.++....++..|+|+|-|+.|++||.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 2334444445789999999999999993
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=199.34 Aligned_cols=236 Identities=20% Similarity=0.280 Sum_probs=183.0
Q ss_pred CCceEEEEecCCCccccc------cCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004594 480 SSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 480 ~~~s~~~fs~d~~~~l~~------~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
...++..|+.+...++.. ....+-+-+++++.|...|.+.+|+.... ..+.++++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-------------------~l~Eti~A 452 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-------------------SLVETIRA 452 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------------hhhhhhhc
Confidence 345556666664422111 11124445677777777777777744322 34556679
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE--E------EEEccCCCCEEEEEEcCCCCEEEEEeCCCe
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV--K------STLEEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t-----~~~--~------~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~ 620 (743)
|.+.|.+++.+||++.++|||.|++|++||..- +.. + +++ .-++.|.|++++||+++|+.+--|.+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999999999999999999999999642 111 1 122 23578999999999999999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEE
Q 004594 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILN 696 (743)
Q Consensus 621 V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~s 696 (743)
|+||-+++-+. ...+.||.-+|.|++.+||+. +++|||.|..|+||-+.-|.|-+.+.+|. .+.|.|..-.+++
T Consensus 532 VkVyflDtlKF-flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 532 VKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEEEEecceee-eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE
Confidence 99999998665 667889999999999999976 88899999999999999999999998873 3568899999999
Q ss_pred EecCCeEEEEecc------------cceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 697 SIFNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 697 gs~Dg~v~vh~~~------------v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
++.|+.|+-|+.. ..+.+....+++++++|+|+|..|++|.
T Consensus 610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999998532 2334444455588999999999999993
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=202.73 Aligned_cols=220 Identities=12% Similarity=0.202 Sum_probs=181.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.++++.+|+.|+.|++|....+. ..........++.|++.|.+++...+++.|+++|.|-+|++|+.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~-------------~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDS-------------NEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCceEEecCCCceEEEecccccc-------------CCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 35799999999999999665442 11111246678899999999999999999999999999999999
Q ss_pred CCC--eEEEEEccCCCCEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eEEEEe-cCCCCeEEEEEecC
Q 004594 585 ESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPS 651 (743)
Q Consensus 585 ~t~--~~~~~l~~H~~~V~~l~f-spd~~~L~Sgs~Dg~V~vWDl~~~~~---------~l~~l~-gh~~~V~sl~fspd 651 (743)
... -+..++..|++.|.|+++ .++..++|||+.|+.|.|||+.++.. ....+. |+...|++++.++.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 876 577889999999999999 77888999999999999999997632 122333 88999999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc------------ceEEE
Q 004594 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSV 715 (743)
Q Consensus 652 g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v------------~~l~v 715 (743)
| .+|++|+..+.||+||.++++.+..+.+|+. +-++.||..+++++.||+|++|+..- .+.++
T Consensus 183 ~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 183 G-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred c-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 8 5888999999999999999999999999854 56789999999999999999987532 13333
Q ss_pred eecCCCCEEEEEeCCCcEEEeCC
Q 004594 716 SEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 716 s~~~~~~~laSgs~DG~V~iWd~ 738 (743)
...+.-..+++|+.||.|+.-|-
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eeCCCcceEEecCCCCcEEeccc
Confidence 33344578999999999987654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-21 Score=210.60 Aligned_cols=184 Identities=20% Similarity=0.324 Sum_probs=164.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+++++|++|..+.+|..... ..+..+.+|..+|.||.|+++..+|++|+.||+|++||++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred ceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 488999999999999943222 2333488999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
..+.++++.+|...+.+|.|+|-+.++++|+.|..+++||++... |.+.+.+|...|..+.|+|+|. ++++++.|.+|
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCccee
Confidence 999999999999999999999999999999999999999999744 6999999999999999999987 66799999999
Q ss_pred EEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc
Q 004594 666 RYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+|||+..|+.+..|+.|.. +.|+|..-.+..|+.|++|++|+..-
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 9999999999999997643 56888888999999999999999873
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=176.90 Aligned_cols=224 Identities=15% Similarity=0.270 Sum_probs=176.8
Q ss_pred CCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeE
Q 004594 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (743)
Q Consensus 480 ~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~ 559 (743)
..+..+.|+.++ ..+++|+.|+++.+|....+ .+..--..++|++.|.
T Consensus 21 ~~v~Sv~wn~~g---------------~~lasgs~dktv~v~n~e~~-----------------r~~~~~~~~gh~~svd 68 (313)
T KOG1407|consen 21 QKVHSVAWNCDG---------------TKLASGSFDKTVSVWNLERD-----------------RFRKELVYRGHTDSVD 68 (313)
T ss_pred hcceEEEEcccC---------------ceeeecccCCceEEEEecch-----------------hhhhhhcccCCCcchh
Confidence 356678888888 47899999999999966443 1122234578999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------
Q 004594 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------- 631 (743)
Q Consensus 560 ~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~------- 631 (743)
.++|+| ...+|++++.|++|++||++.++++..+....+.| -+.|+|+|.+++.++.|..|.+.|+++.+.
T Consensus 69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence 999998 66799999999999999999999998876544444 578999999999999999999999875321
Q ss_pred ---------------------------------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 004594 632 ---------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (743)
Q Consensus 632 ---------------------------------~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~ 678 (743)
++..+..|.....||.|+|+|+ +||+|+.|..|.+||+..--|++.
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERC 226 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhhee
Confidence 2456678999999999999987 778999999999999999999998
Q ss_pred Eecc----CceeeecCCCEEEEEecCCeEEE---------Eeccc--ceEEEeecCCCCEEEEEeCC---------CcEE
Q 004594 679 FKVC----NLMPIILKGCFILNSIFNCYLLL---------HRIFL--NLLSVSEWCNPDEISTSSWK---------DSCC 734 (743)
Q Consensus 679 ~~~~----~~i~~s~~g~~L~sgs~Dg~v~v---------h~~~v--~~l~vs~~~~~~~laSgs~D---------G~V~ 734 (743)
+... ..+.|+.+|++|+++++|..|-| |.+.. ..+.+.+.+...+|+-+..| |+|+
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vK 306 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVK 306 (313)
T ss_pred eccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeE
Confidence 8864 56889999999999999999888 43332 34455555555566554433 5677
Q ss_pred EeC
Q 004594 735 SHR 737 (743)
Q Consensus 735 iWd 737 (743)
+|-
T Consensus 307 iFG 309 (313)
T KOG1407|consen 307 IFG 309 (313)
T ss_pred Eec
Confidence 763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=195.29 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=175.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+++|+.|..|++|... +.+...+.++.+..+.|+.+.|.++++.+++++.|+.+++|+++.
T Consensus 188 dtlatgg~Dr~Ik~W~v~-----------------~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVL-----------------GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred chhhhcchhhhhhhhhcc-----------------cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 468999999999999442 223456778888889999999999999999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
.....++.+|++.|+++.|.-....+++|+.|.+|++||+.... |.+++- ..+.+.+|+..+ ..++||..|++||
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVR 325 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEecc---eeeeecccccceE
Confidence 99999999999999999998876679999999999999999844 455543 234566776652 3677999999999
Q ss_pred EEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEEEEecccceE----------------EEeecCCCCEEEEE
Q 004594 667 YWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFLNLL----------------SVSEWCNPDEISTS 727 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l----------------~vs~~~~~~~laSg 727 (743)
+||+++..++.....+ +++.++++|+.|++.+.|.++.+++.....+ .+.+.+++.|+++|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 9999999999888875 5577889999999999999999977654322 23344558899999
Q ss_pred eCCCcEEEeCC
Q 004594 728 SWKDSCCSHRE 738 (743)
Q Consensus 728 s~DG~V~iWd~ 738 (743)
|.||.|+||+-
T Consensus 406 S~dgsv~iW~v 416 (459)
T KOG0288|consen 406 SADGSVYIWSV 416 (459)
T ss_pred cCCCcEEEEEc
Confidence 99999999974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=191.30 Aligned_cols=236 Identities=16% Similarity=0.154 Sum_probs=177.1
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCC--CCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDD--ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V 579 (743)
....+++|.|++|..|.+|+..-. ..+....+......+....+.-..-.+|++.|.+++|+. -.+.||+||.|++|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 334689999999999999965322 112222222111111111122223457999999999987 44589999999999
Q ss_pred EEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 004594 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 580 ~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaS 658 (743)
++||+.++++..++..|...|.++.|+|. ...|++|+.|++|.+.|.|.... ......-.+.|-.++|+|..++.+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEEeccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999995 77899999999999999996443 22223356789999999999988989
Q ss_pred EeCCCcEEEEECCCC-eEEEEEeccCc----eeeec-CCCEEEEEecCCeEEEEecccceE--------------EEeec
Q 004594 659 CDNNSEIRYWSINNG-SCAGVFKVCNL----MPIIL-KGCFILNSIFNCYLLLHRIFLNLL--------------SVSEW 718 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~-~g~~L~sgs~Dg~v~vh~~~v~~l--------------~vs~~ 718 (743)
+..||+|+.+|+|.. +++.+++.|.. +++.. ...++++++.|++|++|+..+... ++...
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 89999998843 55443 455788999999999998665322 22222
Q ss_pred CC-CCEEEEEeCCCcEEEeCCC
Q 004594 719 CN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 719 ~~-~~~laSgs~DG~V~iWd~~ 739 (743)
.+ ...++.||..+.++|||..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CCcceEEEecCccceEEEeecc
Confidence 11 4678889999999999854
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=176.02 Aligned_cols=197 Identities=17% Similarity=0.283 Sum_probs=158.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
.+++.+|+.|+.+.+|+.....+.+.....+.. ........-.+|+-.|.++.|-| |.-.|.+++.|++++|||+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceehe----eeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 489999999999999987665433322221111 01111122347899999999999 7778999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd---~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
.+.+....|+ ..+.|++-+|+|- ..+|++|..|-.|++.|+..+.. .+++.||...|.+|.|+|..+++|++|+.
T Consensus 132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCC
Confidence 9988877775 5778999999993 45678888999999999999775 89999999999999999999999999999
Q ss_pred CCcEEEEECCCC-eEEEEEecc------------------CceeeecCCCEEEEEecCCeEEEEec
Q 004594 662 NSEIRYWSINNG-SCAGVFKVC------------------NLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 662 Dg~IrvWDl~tg-~~v~~~~~~------------------~~i~~s~~g~~L~sgs~Dg~v~vh~~ 708 (743)
||.||+||++.. .|..++..| ..+++..+|.++++.+.|..+++|..
T Consensus 210 Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 210 DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999999999865 566555433 23678899999999999999999764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=203.47 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=170.8
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.+...+.|+.|++|+ .++|+||.|..|.+|.-... .....++.--.......++.+..+++|..
T Consensus 67 ~h~~sv~CVR~S~dG---------------~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDG---------------SYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDS 130 (942)
T ss_pred cccCceeEEEECCCC---------------CeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCC
Confidence 355678899999998 69999999999999965531 11112222122334567889999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------ 630 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~------ 630 (743)
.|.+++|+|++.+||+++.|++|.|||..+++.+.++++|.+.|..+.|+|-|++|+|-+.|++|+||++.+-.
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964210
Q ss_pred ---------------------------------------------eeEEEEecCCCCeEEEEEecC--------C----C
Q 004594 631 ---------------------------------------------YSLRTFTGHSTTVMSLDFHPS--------K----E 653 (743)
Q Consensus 631 ---------------------------------------------~~l~~l~gh~~~V~sl~fspd--------g----~ 653 (743)
.+-..|.||.+++.++.|+|. | .
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 012346689899999999872 1 1
Q ss_pred ----eEEEEEeCCCcEEEEECCCCeEEEEEec-----cCceeeecCCCEEEEEecCCeEEEEe
Q 004594 654 ----DLLCSCDNNSEIRYWSINNGSCAGVFKV-----CNLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 654 ----~llaSgs~Dg~IrvWDl~tg~~v~~~~~-----~~~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
.++|+|+.|++|.||.....+++..+.. ...++|+|||..|+.+|.||+|.+..
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 1778889999999998877666554432 13477889999999999999888743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-19 Score=175.02 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=171.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd 583 (743)
...|++++.|++|++|..... .....+.+|++|.++|.-++|.. -|.+||++++||+|.||.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n----------------~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNN----------------GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred cceeeeecCCccEEEEEEcCC----------------CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 578999999999999955433 12367788999999999999965 899999999999999999
Q ss_pred CCCCe--EEEEEccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-C-eeEEEEecCCCCeEEEEEecC---C--
Q 004594 584 TESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP-D-YSLRTFTGHSTTVMSLDFHPS---K-- 652 (743)
Q Consensus 584 ~~t~~--~~~~l~~H~~~V~~l~fspd--~~~L~Sgs~Dg~V~vWDl~~~-~-~~l~~l~gh~~~V~sl~fspd---g-- 652 (743)
-.++. .......|...|.+|+|.|. |-.|++++.||.|.|.+++.. . ...+....|+-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87763 23455679999999999995 678899999999999998865 2 223456689999999999986 3
Q ss_pred --------CeEEEEEeCCCcEEEEECCCCe--EEEEEeccC----ceeeecCC----CEEEEEecCCeEEEEecccc---
Q 004594 653 --------EDLLCSCDNNSEIRYWSINNGS--CAGVFKVCN----LMPIILKG----CFILNSIFNCYLLLHRIFLN--- 711 (743)
Q Consensus 653 --------~~llaSgs~Dg~IrvWDl~tg~--~v~~~~~~~----~i~~s~~g----~~L~sgs~Dg~v~vh~~~v~--- 711 (743)
.+.|++|+.|..|+||+...+. ..+++.+|. .+++.|.- .+|++++.||+|.||.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 1358899999999999998863 223466663 35566543 57999999999999765432
Q ss_pred ------------eEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 712 ------------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 712 ------------~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+..+++...+..|+.++.|..|.+|+++.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 23333444477999999999999998763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=176.32 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=173.4
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004594 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 509 l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
++.|++...|.-|......++ ......+++.+...+..|.+.|+|+++ +++++|+|+.|-+|+|||+....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 467777777766644322111 112234566778888999999999999 58999999999999999999988
Q ss_pred EEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 589 ~~~~l~~H~~~V~~l~fspd~~--~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
.+..+-.|.+.|+++.|.++.. .|++|+.||.|.+|+... ..++.++++|.+.|+.|+.||.++ +..+.+.|+.+|
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 8888889999999999998754 899999999999999986 467999999999999999999987 666888899999
Q ss_pred EEECCCCeEEEEEec---cCceeeecCCCEEEEEecCCeEEEEecc-----------cceEEEeecCCCCEEEEEeCCCc
Q 004594 667 YWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCYLLLHRIF-----------LNLLSVSEWCNPDEISTSSWKDS 732 (743)
Q Consensus 667 vWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~Dg~v~vh~~~-----------v~~l~vs~~~~~~~laSgs~DG~ 732 (743)
.||+-.|+.-..... .+.+.|+|.|.+++.++.++. -+|... ...+++.+. +..++++|+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i-~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI-DIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE-EEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce
Confidence 999988876555543 245889999999888887753 343221 223343333 3789999999999
Q ss_pred EEEeCCCc
Q 004594 733 CCSHRELY 740 (743)
Q Consensus 733 V~iWd~~~ 740 (743)
|.+||++.
T Consensus 231 i~~~D~ds 238 (362)
T KOG0294|consen 231 ISLKDTDS 238 (362)
T ss_pred EEEeccCC
Confidence 99999984
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=204.67 Aligned_cols=211 Identities=14% Similarity=0.288 Sum_probs=168.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
+++|++++..|.|.+|+.... ...+.+..|.+|+..|+++.|++ .-.+|++|+.||+|++||+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 588999999999999966432 12234557889999999999998 5678999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
+..+...++.+....|.+|.|+| .+..|+++...|+|.+||+|.+..|...+..|.++|.++.|||++ .+|||||.|+
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK 242 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDK 242 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCc
Confidence 99988889999999999999999 488999999999999999999998899999999999999999975 5889999999
Q ss_pred cEEEEECCCCeE-----EEEEeccCceeeecCCCE-EEEEe--cCCeEEEEecc---------------cceEEEeecCC
Q 004594 664 EIRYWSINNGSC-----AGVFKVCNLMPIILKGCF-ILNSI--FNCYLLLHRIF---------------LNLLSVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~-----v~~~~~~~~i~~s~~g~~-L~sgs--~Dg~v~vh~~~---------------v~~l~vs~~~~ 720 (743)
.|+|||+.+.+. +.+......+.|-|.-.+ |++++ .|-.|+||+.. +..++|.. .+
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~-~d 321 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS-GD 321 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC-CC
Confidence 999999986542 233333345667777666 44443 46678887654 33444443 23
Q ss_pred CCEEEEEeCCCcEE
Q 004594 721 PDEISTSSWKDSCC 734 (743)
Q Consensus 721 ~~~laSgs~DG~V~ 734 (743)
...+.+++-||+|.
T Consensus 322 ~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 322 RINLWSCSKDGTVL 335 (839)
T ss_pred ceeeEeecCccHHH
Confidence 56778888888764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=171.96 Aligned_cols=223 Identities=16% Similarity=0.166 Sum_probs=174.4
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+..+.|+.+| .++++.+.|.++.+|+..++ +.++++..++..|
T Consensus 14 ~~~i~sl~fs~~G---------------~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~ 59 (311)
T KOG1446|consen 14 NGKINSLDFSDDG---------------LLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGV 59 (311)
T ss_pred CCceeEEEecCCC---------------CEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccc
Confidence 4456677788777 57888999999999977665 5677778888889
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~--Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
..++|......++.++. |.+||..++.+.+.++.|.||+..|.+++.+|-++.+++++.|++||+||++... |...+
T Consensus 60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l 138 (311)
T KOG1446|consen 60 DLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLL 138 (311)
T ss_pred cEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEE
Confidence 99999776666666665 8999999999999999999999999999999988999999999999999999755 34444
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEEEec-------cCceeeecCCCEEEEEecCCeEEEEe
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKV-------CNLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg--~~v~~~~~-------~~~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
. ...-..++|+|+|- ++|.+.....|++||+|.- .+-.++.. .+.+.|+++|++|+.++..+.+.+-+
T Consensus 139 ~--~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 139 N--LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred e--cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 3 23334579999975 6666666669999999964 23333332 24588999999999999998877733
Q ss_pred ccc---------------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 708 IFL---------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 708 ~~v---------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
..- ..+..+..+++.+|++|+.||+|.+|+-.
T Consensus 216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 221 12455566778899999999999999753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=187.06 Aligned_cols=128 Identities=24% Similarity=0.438 Sum_probs=111.6
Q ss_pred ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 543 ~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t---~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
.+....+++..|++.|.-+.||++|++||||+.|.++.||.+.. .+...++.+|..+|..+.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 34556778899999999999999999999999999999998754 455788999999999999999999999999999
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l~-gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
.+++||+.++.. +..+. +|...+.+++|.|||.. +++|+.|+.|..||+..
T Consensus 292 ~~~lwDv~tgd~-~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 292 VLSLWDVDTGDL-RHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDG 343 (519)
T ss_pred heeeccCCcchh-hhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCc
Confidence 999999999775 44443 45678999999999875 55999999999999873
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-19 Score=179.94 Aligned_cols=189 Identities=24% Similarity=0.307 Sum_probs=155.5
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEccCCCCEEEEEEcCC
Q 004594 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 608 (743)
Q Consensus 547 ~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t------------------~~~~~~l~~H~~~V~~l~fspd 608 (743)
+...+..|+.++.+.+|+|||.++|||+.|..|+|.|++. ...++++..|.+.|.++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4567789999999999999999999999999999999871 1357888999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-----
Q 004594 609 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----- 681 (743)
Q Consensus 609 ~~~L~Sgs~Dg~V~vWDl~~~~~--~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----- 681 (743)
...|++|+.|++|++||+.+... ..+.|. ....|.++.|||.|++++ .|..--++|+||+++..|...-..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999986442 122333 345799999999998555 777788999999999888644331
Q ss_pred --cCceeeecCCCEEEEEecCCeEEEEeccc--------------ceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 682 --CNLMPIILKGCFILNSIFNCYLLLHRIFL--------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 682 --~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v--------------~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.+.+.+++.|+..++++.||.|++|+.-. .+.+..+..++.+|++.|-|.+|++|.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 24467889999999999999999998532 233444556688999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=194.57 Aligned_cols=204 Identities=20% Similarity=0.301 Sum_probs=166.8
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
+....+++||.|.+|++|+..-..+......+. ......+++ .-.+.|.|+++||||++||++--|.+|+||-
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~------lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV------LSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCccccee------eeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 345778999999999999653221100000000 111112222 2346699999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
+++.+....+.||.-+|.|+.++||++.++||+.|.+|++|-++-+. |-+.|-+|.+.|++|.|.|. .+++.+||.|+
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~ 614 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKDG 614 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCcc
Confidence 99999999999999999999999999999999999999999998766 57788899999999999996 56777999999
Q ss_pred cEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccceEEEe
Q 004594 664 EIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLNLLSVS 716 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~vs 716 (743)
.|+-||-.+.+++..+.+|.. .++.|+|.|+++++.|..|++|...-..+.+.
T Consensus 615 kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 615 KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred eEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 999999999999999998854 67889999999999999999998766555443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=193.15 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=172.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-i~fsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
.++.++|.|+++++|.- .+..+.+...+.+|.+.|.+ ++|-+ ++.+|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 36899999999999933 34455666778889888888 88876 6667999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
....++.++.+|...|+|+....++. ++||++|.++++|-+.. +...+.+|...|+++.+.|+. .++|||.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999877776 99999999999998764 456799999999999999986 5679999999
Q ss_pred EEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccc-----------eEEEeecCCCCEEEEEeC
Q 004594 665 IRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 665 IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v~-----------~l~vs~~~~~~~laSgs~ 729 (743)
||+|.- ++++++|.+|+. +++ .++..+++++.||.|++|+.... ..+++...+.+.|+|+|.
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~v-l~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAV-LDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEE-ecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 999975 788999999865 333 34556789999999999987433 234444455789999999
Q ss_pred CCcEEEeCCC
Q 004594 730 KDSCCSHREL 739 (743)
Q Consensus 730 DG~V~iWd~~ 739 (743)
|++++||+..
T Consensus 240 DrtlriW~~~ 249 (745)
T KOG0301|consen 240 DRTLRIWKKD 249 (745)
T ss_pred CceEEEeecC
Confidence 9999999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=184.07 Aligned_cols=227 Identities=17% Similarity=0.200 Sum_probs=172.3
Q ss_pred EEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEc
Q 004594 485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564 (743)
Q Consensus 485 ~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fs 564 (743)
+..+-||..+|+-.++.+ ..+++|+.||-|++|+... -.+..++..|.+.|..|++.
T Consensus 62 L~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred ccccccccchhhcCcchh----hhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEEec
Confidence 345556655555554433 4569999999999995432 24567889999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---------------------------Ce-----------EEEEEccCCCCEEEEEEc
Q 004594 565 PDGKLLATGGHDKKAVLWCTES---------------------------FT-----------VKSTLEEHTQWITDVRFS 606 (743)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWd~~t---------------------------~~-----------~~~~l~~H~~~V~~l~fs 606 (743)
. ..+++++.|++|+.|.++. |+ ++..+.--.+.|.++.|+
T Consensus 119 ~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 119 Q--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred c--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecC
Confidence 5 6788999999999997431 11 222222334568899999
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEeccCc
Q 004594 607 PS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCNL 684 (743)
Q Consensus 607 pd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~~~ 684 (743)
|. ...|++|..|+.|.+||+++... ++... ....-+.|+|+|+ ...|+++++|..++.||++.- ..+.++.+|.+
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~P-l~KVi-~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs 273 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASP-LKKVI-LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS 273 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCc-cceee-eeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccce
Confidence 95 55778888999999999998765 44332 2345678999995 567789999999999999974 56777777744
Q ss_pred ----eeeecCCCEEEEEecCCeEEEEecc-------------cceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 685 ----MPIILKGCFILNSIFNCYLLLHRIF-------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 685 ----i~~s~~g~~L~sgs~Dg~v~vh~~~-------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+.|+|.|.-+++|+.|.+|+|.... -.++++.+..+..+|+|||.|+.|++|+..
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 6789999999999999999994332 146788888889999999999999999754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-18 Score=175.13 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=160.9
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
..+.+|..|+..|.+|+.+|+.+++|||+.|....||++.+++....+.+|+..|+|+.|+.++.+||||+.+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCC
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNC 701 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg 701 (743)
..++.. ...+...-..|.=+.|||.+. +|++|+.||.|-+|.+.++...+.+.+|.. -.|.|+|+.++++..||
T Consensus 135 ~stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 135 VSTGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 999775 555544556788899999865 777999999999999999888888988754 34889999999999999
Q ss_pred eEEEEecccce-------------EEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 702 YLLLHRIFLNL-------------LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 702 ~v~vh~~~v~~-------------l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
+|++|+..-.. .++.....+..+++|+.++.+++-.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 99998754321 1222233366788888888777654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=181.40 Aligned_cols=211 Identities=14% Similarity=0.132 Sum_probs=178.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+++.+|+.|.++.+| +......+.+++||+..|+.+.|+|+...+++++.|..|+||.+..
T Consensus 232 ~~ilTGG~d~~av~~-------------------d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLF-------------------DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEE-------------------ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 678999999999999 3344467788999999999999999999999999999999999988
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~-gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
..+......|..+|+.+..+|.+.||++++.|++..+.|++++........ ...-.+++.+|||||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 777778889999999999999999999999999999999999775322222 1224589999999974 88899999999
Q ss_pred EEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEeccc-------------ceEEEeecCCCCEEEEEe
Q 004594 666 RYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEISTSS 728 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v-------------~~l~vs~~~~~~~laSgs 728 (743)
+|||+..+..+..|.+|+. +.|+.+|-|++++.+|+.|++|+..- .+-+++++..+.+++.+|
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999999999998854 88999999999999999999997431 133445555578999998
Q ss_pred CCCcEEEeC
Q 004594 729 WKDSCCSHR 737 (743)
Q Consensus 729 ~DG~V~iWd 737 (743)
.|=.|++++
T Consensus 452 ~~l~Vy~~~ 460 (506)
T KOG0289|consen 452 SDLQVYICK 460 (506)
T ss_pred ceeEEEEEe
Confidence 888887765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=183.79 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=168.0
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+.+.+.+.|+++++|.. .......++.+|++.|+++.|.-....+++|+.|.+|++||+..
T Consensus 232 ~~~iAas~d~~~r~Wnv-------------------d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNV-------------------DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred ceEEeecCCCceeeeec-------------------cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 57788889999999944 33467788999999999999987776799999999999999998
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
..|.+++-. ...+.+|+.. ...+++|-.|++||+||++.... +.....+. .|++|+.++++..++ +++.|.++.
T Consensus 293 ~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lL-sssRDdtl~ 366 (459)
T KOG0288|consen 293 AYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELL-SSSRDDTLK 366 (459)
T ss_pred hheeccccc-cccccceEec--ceeeeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEe-eecCCCcee
Confidence 887766542 3445566554 45678888899999999998664 67776664 899999999998777 668999999
Q ss_pred EEECCCCeEEEEEecc--------CceeeecCCCEEEEEecCCeEEEEecccc--------------eEEEeecCCCCEE
Q 004594 667 YWSINNGSCAGVFKVC--------NLMPIILKGCFILNSIFNCYLLLHRIFLN--------------LLSVSEWCNPDEI 724 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~--------~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~--------------~l~vs~~~~~~~l 724 (743)
+.|+++......|... +.+.|+|++.|+++|+.||.|+||+.... .+++.+.+.+..+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 9999999988888752 45889999999999999999999975421 3344445557899
Q ss_pred EEEeCCCcEEEeC
Q 004594 725 STSSWKDSCCSHR 737 (743)
Q Consensus 725 aSgs~DG~V~iWd 737 (743)
++++.++.|.+|.
T Consensus 447 lsadk~~~v~lW~ 459 (459)
T KOG0288|consen 447 LSADKQKAVTLWT 459 (459)
T ss_pred hcccCCcceEecC
Confidence 9999999999994
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=183.75 Aligned_cols=183 Identities=19% Similarity=0.217 Sum_probs=158.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 628 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~------ 628 (743)
.++|.|++-+|+|.+|+.|+..+.|.+|.+.+|..+.++.+|-..|+|+.|+-|+.+|+||+.||.|.+|++..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46799999999999999998999999999999999999999999999999999999999999999999998632
Q ss_pred --CCeeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCe
Q 004594 629 --PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 629 --~~~~l~~l~gh~~~V~sl~fspdg~-~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~ 702 (743)
...+++.|..|+-+|+++...+.|. -.++|+|.|.+||+||+..|..+.++... .+++++|.++.+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 2346889999999999999887643 36779999999999999999988777654 55789999999999999999
Q ss_pred EEE------------------------------Eec--ccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 703 LLL------------------------------HRI--FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 703 v~v------------------------------h~~--~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|.+ |.. .+++++++.+ +.+|++|+.||+|+|||-.
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEecc
Confidence 887 222 4455555555 7899999999999999853
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=183.98 Aligned_cols=219 Identities=15% Similarity=0.175 Sum_probs=168.6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
..+|++++..+.|.+|+...........+ ...+-..+.+|...-++++|++ ..-.|++|+.|++|++||+
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi 207 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDI 207 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEec
Confidence 47889999999999997765532222111 3345567889998888999998 4457999999999999998
Q ss_pred CCC-------eEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeEEEEecCCCCeEEEEEecCCCeE
Q 004594 585 ESF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 585 ~t~-------~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~-~~~~l~~l~gh~~~V~sl~fspdg~~l 655 (743)
... .+...+.+|+..|.+++|++ +..+|++++.|+.+.|||+|+ ...+.....+|.+.|+|++|+|-+.++
T Consensus 208 ~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 208 NAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred cccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCce
Confidence 642 24567889999999999999 567889999999999999996 344567788999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC-eEEEEEeccCc----eeeecC-CCEEEEEecCCeEEEEecccceEE----EeecCCCCE-E
Q 004594 656 LCSCDNNSEIRYWSINNG-SCAGVFKVCNL----MPIILK-GCFILNSIFNCYLLLHRIFLNLLS----VSEWCNPDE-I 724 (743)
Q Consensus 656 laSgs~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s~~-g~~L~sgs~Dg~v~vh~~~v~~l~----vs~~~~~~~-l 724 (743)
||+||.|++|++||+|+- ++++++.+|.. +.|+|. ...|++++.|+++.+|+..--.-. -....++.+ +
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 999999999999999974 57788888744 567775 456788899999999986532211 111222343 4
Q ss_pred EEEeCCCcE
Q 004594 725 STSSWKDSC 733 (743)
Q Consensus 725 aSgs~DG~V 733 (743)
.=||+-++|
T Consensus 368 ~HgGH~~kV 376 (422)
T KOG0264|consen 368 IHGGHTAKV 376 (422)
T ss_pred EecCccccc
Confidence 446666666
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=188.60 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=173.3
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCC----ccc----c----------ccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRD----RVG----R----------SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK 568 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~----~~~----~----------~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~ 568 (743)
..+.+++.|++|++|+......... ... + ..+...+.-.+.....-+....|.|++++|+|.
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 3457899999999997765321111 000 0 011111111111122223455699999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 004594 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (743)
Q Consensus 569 ~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp---d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~s 645 (743)
+||+|...|.++||++.+.+....++.|...|.|+.|+. ..++|++++.|..|+|||+...-..+.++.+|.+.|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999999999999999888889999999999999976 25689999999999999997655556677777777777
Q ss_pred EEEec-------------------------------------------------CCCeEEEEEeCCCcEEEEECCCCeEE
Q 004594 646 LDFHP-------------------------------------------------SKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 646 l~fsp-------------------------------------------------dg~~llaSgs~Dg~IrvWDl~tg~~v 676 (743)
|.|.. ..+ ++++++.|+.|||||+.+|+.+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccccee
Confidence 66643 322 5578889999999999999999
Q ss_pred EEEeccCc-------eeeecCCCEEEEEecCCeEEE--------------EecccceEEEeecCCCCEEEEEeCCCcEEE
Q 004594 677 GVFKVCNL-------MPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 677 ~~~~~~~~-------i~~s~~g~~L~sgs~Dg~v~v--------------h~~~v~~l~vs~~~~~~~laSgs~DG~V~i 735 (743)
+.|++... +.+.|.|.||++...|.++.+ |...++.+.|..+| ..|++.+.||.|.|
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC--kHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC--KHLISVSGDGCIFV 709 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc--hhheeecCCceEEE
Confidence 99997422 557799999999999999998 44555666666665 48999999999999
Q ss_pred eCCCc
Q 004594 736 HRELY 740 (743)
Q Consensus 736 Wd~~~ 740 (743)
|+-..
T Consensus 710 W~lp~ 714 (1080)
T KOG1408|consen 710 WKLPL 714 (1080)
T ss_pred EECch
Confidence 98653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-20 Score=202.62 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=165.8
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~ 628 (743)
+.+..|...|.|+..-..++.+++|++|.++.+|.+.....+..+.+|...|.||.|+++..+|+.|+.+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34557888899998877889999999999999999988888888999999999999999999999999999999999998
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEE
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~ 704 (743)
... ++++.||...+.+|+|+|-+. ++++|+.|+.+++||++..-|.+.+++|.. +.|+|+|+|+++|++|.+++
T Consensus 102 Ak~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 665 889999999999999999986 568999999999999998889999998643 66889999999999999999
Q ss_pred EEeccc------------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 705 LHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 705 vh~~~v------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+|+..- ....+.+.+...++++||.|++|++||-.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 998732 23334444446688999999999999976
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=183.32 Aligned_cols=184 Identities=19% Similarity=0.293 Sum_probs=151.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~--~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~ 632 (743)
...|.+|...|||+.|++|++-.+|.|||+....+ ...+..-.-.+++++.+||.+..++|+.||.|.|||+.+.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 35699999999999999999999999999976433 23333334567889999999999999999999999999855 4
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEEE----
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLL---- 705 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~v---- 705 (743)
++.|.||.+.+.||+++++|..+. +|+.|.+||.||++.++.+...... -++..+|.+.|+++|-+++.+.|
T Consensus 544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 999999999999999999998777 9999999999999998766544332 22456799999999999998887
Q ss_pred -------EecccceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 706 -------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 706 -------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
|-....++++.+...+.++++.|-|..+-.|+..|
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 23344566666666688999999999999998876
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=182.25 Aligned_cols=233 Identities=18% Similarity=0.208 Sum_probs=168.2
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.|+..++.+.+.|.| .-+++|++|.+|++|++...... ...++.+.- ..+.
T Consensus 165 hgtk~Vsal~~Dp~G---------------aR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~P--~E~h 215 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSG---------------ARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQP--CETH 215 (641)
T ss_pred CCceEEEEeeecCCC---------------ceeeeccccceEEEEeccccccc------------chhhhccCc--cccc
Confidence 345556666666655 46899999999999987654211 111122222 2334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE------------ccCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l------------~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~v 623 (743)
.|.++.|++.|..|++.+..-.++|+|-+....+... +||...++|.+|+|. ...|+|++.||++|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 5999999999998888888889999997655444433 579999999999996 567899999999999
Q ss_pred EECCCCCeeEEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE--EEEE-ecc------Cceeeec
Q 004594 624 WDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF-KVC------NLMPIIL 689 (743)
Q Consensus 624 WDl~~~~~~l~~l~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~--v~~~-~~~------~~i~~s~ 689 (743)
||+.+.+.-+.+|+ +..-.+++++|+|+|. +||+|..||.|.+||.+.... ...+ ..| +++.|+.
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 99998766566655 2345689999999987 578888999999999865322 1222 222 5688999
Q ss_pred CCCEEEEEecCCeEEEEecccc---------------eEEEeecCCCCEEEEEe------CCCcEEEeCCC
Q 004594 690 KGCFILNSIFNCYLLLHRIFLN---------------LLSVSEWCNPDEISTSS------WKDSCCSHREL 739 (743)
Q Consensus 690 ~g~~L~sgs~Dg~v~vh~~~v~---------------~l~vs~~~~~~~laSgs------~DG~V~iWd~~ 739 (743)
+|++|++.+.|+++++|+..-. ....++.++..+|++|. ..|++++||..
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 9999999999999999986421 12334444466778775 34667777653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=176.41 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=166.2
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
+..++.+.+|++.|..++....-..+.+++.|.+.+||.++++.|+.++.||.+.|.||.|++.+.+++|++.|++.+||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 45667788999999999998877899999999999999999999999999999999999999999999999999999999
Q ss_pred ECC------C---------------------------------CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 625 DTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 625 Dl~------~---------------------------------~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
... . -+.++..|.+|.+.|.+.+|-..|. -+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccc
Confidence 731 0 0125678899999999999998876 45599999999
Q ss_pred EEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEecccce-------------EEEeecCCCCEEEEEe
Q 004594 666 RYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSVSEWCNPDEISTSS 728 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~-------------l~vs~~~~~~~laSgs 728 (743)
.+||+++|+.+..+.+|. .++.+|.-+++++.+.|-++++|+..... .++.+.. ...+++|+
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~-dd~vVSgS 375 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT-DDRVVSGS 375 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-CCceeecC
Confidence 999999999999999984 36788999999999999999998754322 2222222 56899999
Q ss_pred CCCcEEEeCCCcc
Q 004594 729 WKDSCCSHRELYL 741 (743)
Q Consensus 729 ~DG~V~iWd~~~l 741 (743)
.|.+|++||-+..
T Consensus 376 DDrTvKvWdLrNM 388 (481)
T KOG0300|consen 376 DDRTVKVWDLRNM 388 (481)
T ss_pred CCceEEEeeeccc
Confidence 9999999997653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=191.73 Aligned_cols=207 Identities=16% Similarity=0.224 Sum_probs=162.0
Q ss_pred ccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC
Q 004594 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (743)
Q Consensus 475 ~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H 554 (743)
...+.+.+..+.|++... .+|.+||.|++|++|+.... +-+.++.+.
T Consensus 129 f~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~-------------------~S~~t~~~n 175 (839)
T KOG0269|consen 129 FNEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSK-------------------KSKSTFRSN 175 (839)
T ss_pred hhhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeecc-------------------ccccccccc
Confidence 344667777777776554 79999999999999976544 234456667
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-
Q 004594 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY- 631 (743)
Q Consensus 555 ~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~- 631 (743)
...|.+|.|+| .+..|+++.+.|.+.+||++- .++...+..|.++|.|+.|+|+..+||||+.|++|+|||+.+.+.
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 88899999999 788999999999999999986 456677889999999999999999999999999999999986543
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCC-eEEEEEeccCc----eeee-cCCCEEEEEecCCeE
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SCAGVFKVCNL----MPII-LKGCFILNSIFNCYL 703 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs--~Dg~IrvWDl~tg-~~v~~~~~~~~----i~~s-~~g~~L~sgs~Dg~v 703 (743)
...++. ...+|..|.|-|+..+.|++|+ .|-.|+|||++.. -+..+|..|+. ++|. .+-..+++++.|++|
T Consensus 256 ~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 256 PKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 233333 4578999999999988998886 5778999999864 34456665533 4554 356679999999999
Q ss_pred EEEecccceEEE
Q 004594 704 LLHRIFLNLLSV 715 (743)
Q Consensus 704 ~vh~~~v~~l~v 715 (743)
..|........+
T Consensus 335 ~qh~~knat~pi 346 (839)
T KOG0269|consen 335 LQHLFKNATTPI 346 (839)
T ss_pred HHhhhhcccChh
Confidence 887654443333
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=163.28 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=159.1
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 550 ~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
.+.+|..+|+-|.|+.+|.+|++|+.|.++.||-..+|+.+.++.||++.|+|++.+-+.++++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEE----eCCCcEEEEECC-------CCeEEEEEecc----CceeeecCCCEE
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSEIRYWSIN-------NGSCAGVFKVC----NLMPIILKGCFI 694 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSg----s~Dg~IrvWDl~-------tg~~v~~~~~~----~~i~~s~~g~~L 694 (743)
+. +..++ ...+|..+.|+++|..++++. +..+.|.++|++ ..+++..+..+ +.+.|.+.+.+|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 75 66665 567899999999988655443 234789999998 34556666554 335688999999
Q ss_pred EEEecCCeEEEEecccc-------------eEEEeecCCCCEEEEEeCCCcEEEeCCCcc
Q 004594 695 LNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 695 ~sgs~Dg~v~vh~~~v~-------------~l~vs~~~~~~~laSgs~DG~V~iWd~~~l 741 (743)
++|.+||.|..|+.... .-.+.+..+..+++++|.|.+.++||-..|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 99999999999876642 122334455789999999999999986543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-17 Score=164.98 Aligned_cols=222 Identities=16% Similarity=0.209 Sum_probs=164.6
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
+...+...++.+.|++.. ..|..++||+++++|+.... .....-.
T Consensus 8 l~npP~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~--------------------~l~~~~~ 52 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFK 52 (323)
T ss_pred cCCCChhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccch--------------------hhhhhee
Confidence 334445566777888544 46777789999999955332 1222235
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l 633 (743)
|..+|.+|+|.+ ...+++|+-||.|+++|+.++... .+..|...|.||.+.+....+++|++|++|++||.+. ..++
T Consensus 53 ~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~ 129 (323)
T KOG1036|consen 53 HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVV 129 (323)
T ss_pred cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccc
Confidence 788999999986 457999999999999999987654 5667999999999999888999999999999999997 3334
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-----ec-cCceeeecCCCEEEEEecCCeEEE--
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KV-CNLMPIILKGCFILNSIFNCYLLL-- 705 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~-----~~-~~~i~~s~~g~~L~sgs~Dg~v~v-- 705 (743)
.++. ....|.+++..- . .|+.|+.|..|.+||+++....... +. ..++++.|.+.-.++++-||+|.+
T Consensus 130 ~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 130 GTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 4444 334788888763 3 4557777999999999986543311 11 245777788888889999999888
Q ss_pred ----------------Eec---------ccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 706 ----------------HRI---------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 ----------------h~~---------~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+. .++.+++.+. -+.++|||.||.|.+||-.
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~--~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI--HGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc--cceEEecCCCceEEEccCc
Confidence 221 2334444443 5689999999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=178.03 Aligned_cols=190 Identities=12% Similarity=0.144 Sum_probs=141.6
Q ss_pred EEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-EEEEEc-----cCCCCEEEEEEcCCCCEEEEEeCCCe
Q 004594 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 548 ~~~l~~H~~~V~~i~fspdg-~~LaSgs~Dg~V~IWd~~t~~-~~~~l~-----~H~~~V~~l~fspd~~~L~Sgs~Dg~ 620 (743)
+..-+||...|+|.+|+|+. ..|+|++.|+++||||+.+.+ .+.+|+ +-.-.|+.++|++++++||+|+.||.
T Consensus 261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS 340 (641)
T KOG0772|consen 261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS 340 (641)
T ss_pred hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence 44557999999999999955 479999999999999998643 233332 23456899999999999999999999
Q ss_pred EEEEECCCCCe--eEEEEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEec------cCceeeec
Q 004594 621 VRVWDTENPDY--SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV------CNLMPIIL 689 (743)
Q Consensus 621 V~vWDl~~~~~--~l~~l~gh~~--~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~------~~~i~~s~ 689 (743)
|.+||...... ....-..|.. .|+||.|+++|. +|++-+.|.++++||++.. +++.+..+ .+.++|+|
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP 419 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP 419 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence 99999754221 1234456876 899999999987 5558889999999999974 56665554 35589999
Q ss_pred CCCEEEEEec------CCeEEEEe---------ccc---ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 690 KGCFILNSIF------NCYLLLHR---------IFL---NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 690 ~g~~L~sgs~------Dg~v~vh~---------~~v---~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+.++|++|+. -+++.+.+ +.+ .+..+.+.+.-..|+.|+.||++++|-+
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 9999999864 34454422 111 2333344444568999999999998744
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-16 Score=159.75 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=148.2
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~v 623 (743)
+.+.++.+.||+..|++|+.+|-+..+++++.|++|++||++..++...+.- ..-..++|+|+|-++|++.....|++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEE
Confidence 3378899999999999999999889999999999999999998887766643 33346789999999999998889999
Q ss_pred EECCCC-CeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC-------ceeeecCCC
Q 004594 624 WDTENP-DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-------LMPIILKGC 692 (743)
Q Consensus 624 WDl~~~-~~~l~~l~---gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-------~i~~s~~g~ 692 (743)
||+|.- +.+..+|. +.....+.|.|+|+|+.+|++ ...+.+++.|.-+|.....+..+. ..+|+|++.
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 999874 34455554 335778999999999988755 447789999999999888887652 366889999
Q ss_pred EEEEEecCCeEEEEecccceEEEeec-----------CCCCEEEEEeCCCcEEEe
Q 004594 693 FILNSIFNCYLLLHRIFLNLLSVSEW-----------CNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 693 ~L~sgs~Dg~v~vh~~~v~~l~vs~~-----------~~~~~laSgs~DG~V~iW 736 (743)
++++|+.||+|.+|..........+. -++.+..-.+.+..+.+|
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw 300 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFW 300 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEE
Confidence 99999999999999865322111111 114455555566667677
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=161.73 Aligned_cols=168 Identities=20% Similarity=0.336 Sum_probs=128.4
Q ss_pred cccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeC
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (743)
+...+..-+.++.|...| +-+++++.|.+|++|++.++ ..++......+.
T Consensus 8 i~s~h~DlihdVs~D~~G---------------RRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wra 57 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYG---------------RRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRA 57 (361)
T ss_pred cccCCcceeeeeeecccC---------------ceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEe
Confidence 333444556677777766 68899999999999987443 346677778899
Q ss_pred CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEeCCCe
Q 004594 554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT 620 (743)
Q Consensus 554 H~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd~~---------t~~~~~~l~~H~~~V~~l~fspd--~~~L~Sgs~Dg~ 620 (743)
|.+.|..|.|.+ -|..+|+++.|++|+||.=. ......++......|++|.|.|. |-.+++++.||+
T Consensus 58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence 999999999965 78999999999999999641 11234566667889999999994 778999999999
Q ss_pred EEEEECCCCCe------------------------------------------------------------------eEE
Q 004594 621 VRVWDTENPDY------------------------------------------------------------------SLR 634 (743)
Q Consensus 621 V~vWDl~~~~~------------------------------------------------------------------~l~ 634 (743)
||||+.-.... .+.
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 99998632110 022
Q ss_pred EEecCCCCeEEEEEecCC---CeEEEEEeCCCcEEEEECCC
Q 004594 635 TFTGHSTTVMSLDFHPSK---EDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 635 ~l~gh~~~V~sl~fspdg---~~llaSgs~Dg~IrvWDl~t 672 (743)
++.+|+++|++|+|.|.- -++||+++.|| |+||.++.
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 344788889999999873 24788888898 99998874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=165.41 Aligned_cols=197 Identities=16% Similarity=0.243 Sum_probs=161.4
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
+.+.+.+..+.|+-|. +.|.+|+.+..+++|+..... .+...+.+|+
T Consensus 97 f~hkhivk~~af~~ds---------------~~lltgg~ekllrvfdln~p~------------------App~E~~ght 143 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDS---------------NYLLTGGQEKLLRVFDLNRPK------------------APPKEISGHT 143 (334)
T ss_pred hhhhheeeeEEecccc---------------hhhhccchHHHhhhhhccCCC------------------CCchhhcCCC
Confidence 4445556666666655 678999999999999664431 2345578999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
+.|..+-|+...+.|+++.+|++||+||.+++..+.++. ....|+++.++++|++|.++ ..+.|++||..+... ++.
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-lKs 220 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-LKS 220 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-eee
Confidence 999999999988899999999999999999999998886 46779999999999877655 578999999998654 555
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ecc----CceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVC----NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~-~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+. ....|.+..++|+. .++++|+.|..++.||..+|+.+..+ ++| .++.|+|+|...++|++||+|++|-...
T Consensus 221 ~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 221 YK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred cc-CccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 54 34568999999997 58889999999999999999998886 665 3478999999999999999999997544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=173.17 Aligned_cols=232 Identities=13% Similarity=0.199 Sum_probs=174.8
Q ss_pred ccccCCCCCceEEEEecCCCccc---cccC---ccccCCCCEEEEeeCCCcEEEEecCCCCC----------------CC
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSL---TSAP---NQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------PR 530 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l---~~~~---~~l~d~~~~l~sGs~D~~V~lw~s~~~~~----------------~~ 530 (743)
....+|+.|..++.|+.....++ .... ..+.-....+.+++.|.+|+.|....... ..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~ 159 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN 159 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence 34567888999999998764221 1111 11111125667888899999997432210 00
Q ss_pred ------CccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEE
Q 004594 531 ------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (743)
Q Consensus 531 ------~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l 603 (743)
...+.+|+.. ...++..+.--.+.|.||.|+| .-..|++|+.|+.|.|||++...++..+. -+-.-..|
T Consensus 160 ~~FaTcGe~i~IWD~~---R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~I 235 (433)
T KOG0268|consen 160 SVFATCGEQIDIWDEQ---RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTI 235 (433)
T ss_pred ccccccCceeeecccc---cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccce
Confidence 0112344433 3356777777788899999999 44578888899999999999988776553 23455788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--
Q 004594 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-- 681 (743)
Q Consensus 604 ~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-- 681 (743)
+|+|++..|++|+.|..++.||++....++..+.+|.+.|.+|+|+|.|.. |++||.|.+||||..+.+.....+..
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhhhHhh
Confidence 999988889999999999999999988899999999999999999999985 55999999999999998765544432
Q ss_pred ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004594 682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 682 ---~~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
.-++.|+.|..||++||+|+.|++|...
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 2457799999999999999999999754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=179.77 Aligned_cols=186 Identities=21% Similarity=0.315 Sum_probs=157.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+.+|+.|+.|..++..... ..+.++.+|...|..+.|++|++++|+|+.|+.|.|||..
T Consensus 270 ~~~lssGsr~~~I~~~dvR~~~------------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 270 SSVLSSGSRDGKILNHDVRISQ------------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CceEEEecCCCcEEEEEEecch------------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 4778999999999999664431 1111378999999999999999999999999999999998
Q ss_pred CCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE-EeC
Q 004594 586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-CDN 661 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~--Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaS-gs~ 661 (743)
...++..+.+|.+.|.+++|+| ...+||+|+. |+.|++||+.++.. +.... ..+.|++|.|++....++.+ |-.
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence 8889999999999999999999 4778998865 99999999998664 55443 45789999999997666655 445
Q ss_pred CCcEEEEECCCCeEEEEEeccCc----eeeecCCCEEEEEecCCeEEEEecccc
Q 004594 662 NSEIRYWSINNGSCAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~v~vh~~~v~ 711 (743)
+..|.||+..+.+.+..+.+|.. ++++|+|.+|++|+.|.++++|.....
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67899999999999999999865 668899999999999999999987654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=163.14 Aligned_cols=189 Identities=21% Similarity=0.313 Sum_probs=152.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd 583 (743)
..+|+++++|+.|.+|....+ .+........|...|++|+|.| -|-.||+|+.||+|.|.+
T Consensus 70 G~iLAScsYDgkVIiWke~~g-----------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENG-----------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred CcEeeEeecCceEEEEecCCC-----------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 689999999999999954333 4555667778999999999998 466899999999999999
Q ss_pred CCCC---eEEEEEccCCCCEEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCee-EEEEecCCCCeEE
Q 004594 584 TESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMS 645 (743)
Q Consensus 584 ~~t~---~~~~~l~~H~~~V~~l~fspd---~-----------~~L~Sgs~Dg~V~vWDl~~~~~~-l~~l~gh~~~V~s 645 (743)
+++. ...+....|.-.|.+++|.|- | ++|++|+.|..|+||+..++... -++|.+|.+.|..
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 8763 233456789999999999984 4 57999999999999999876432 2458999999999
Q ss_pred EEEecCC---CeEEEEEeCCCcEEEEECCCC------eEEEEEecc-CceeeecCCCEEEEEecCCeEEEEecccc
Q 004594 646 LDFHPSK---EDLLCSCDNNSEIRYWSINNG------SCAGVFKVC-NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 646 l~fspdg---~~llaSgs~Dg~IrvWDl~tg------~~v~~~~~~-~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~ 711 (743)
++|+|.- ...+++|+.||+|.||-.+.. +.++.|... -.+.++..|+.|++++.|+.|++|...+.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9999973 457899999999999987632 233333322 23778999999999999999999987654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=169.48 Aligned_cols=201 Identities=17% Similarity=0.252 Sum_probs=151.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
.+.++=+..|.|.+|+.......-..... .......+++.++.+|.+.=+.++||| .-..|+||..-+.|++|...
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~---~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGL---EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccc---cccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 45666777889999966543211111111 112245678999999999999999999 22247888888889999988
Q ss_pred CCeEE---EEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 586 SFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 586 t~~~~---~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~-~~l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
++.-. .-|.+|+..|.+++|+|. ...|+||+.||+|+|||+|.+. ......+.|.+.|+.|.|+...+ +|++|+
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~ 321 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGG 321 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecC
Confidence 75532 346789999999999995 6789999999999999999862 22233488999999999999876 999999
Q ss_pred CCCcEEEEECCC---CeEEEEEecc----CceeeecC-CCEEEEEecCCeEEEEecccc
Q 004594 661 NNSEIRYWSINN---GSCAGVFKVC----NLMPIILK-GCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 661 ~Dg~IrvWDl~t---g~~v~~~~~~----~~i~~s~~-g~~L~sgs~Dg~v~vh~~~v~ 711 (743)
.||+++|||+|. ++++..|+.| +++.|+|. ...|++++.|..|.+|+..+.
T Consensus 322 DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999999986 4667777766 34667764 446777788888888887664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=179.90 Aligned_cols=221 Identities=16% Similarity=0.214 Sum_probs=177.7
Q ss_pred ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004594 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 482 ~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (743)
.+.+.|.+++ .||++++.|+.|++|....+.+ +. .++.-|...|.+|
T Consensus 16 ~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~e------------~P------~ti~~~g~~v~~i 62 (933)
T KOG1274|consen 16 LTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDEE------------EP------ETIDISGELVSSI 62 (933)
T ss_pred eEEEEEcCCC---------------CEEEEecCCCceEEeecCCccc------------CC------chhhccCceeEEE
Confidence 5566777766 6999999999999996655420 11 1122266778888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004594 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 562 ~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~ 641 (743)
+. .+++|++|+.+++|.+|...+++.-..+...+-++.+++|+.+|++++.|+.|-.|+|-++.+... ...+.+|..
T Consensus 63 a~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~a 139 (933)
T KOG1274|consen 63 AC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDA 139 (933)
T ss_pred ee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCC
Confidence 87 455999999999999999998887666777788999999999999999999999999999988665 788999999
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc------------CceeeecCCCEEEEEecCCeEEEEecc
Q 004594 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 642 ~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~------------~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
+|.+|.|+|.+. +||+.+.||.|+|||+.++.+.+++.+. ...+|+|+|..++....|+.|++.+..
T Consensus 140 pVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 140 PVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999976 7888888999999999999888777642 336799998888888888898883211
Q ss_pred --------------cceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 710 --------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 --------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
-....+.+.+.+.|||+++.||.|.|||-.
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 112233344448899999999999999876
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=170.22 Aligned_cols=181 Identities=17% Similarity=0.273 Sum_probs=155.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+|+++|..|..|.+|.. .+...++.+.+|.+.|.+++|-..-..+++++.|++|++|+++.
T Consensus 215 kylatgg~d~~v~Iw~~-------------------~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDC-------------------DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred cEEEecCCCceEEEecC-------------------cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 79999999999999944 34456777999999999999987777899999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
...+.++.+|.+.|..|....-.+.+.+|+.|.++++|++.. .....|.+|.+.+-|++|-.+.. |++|+.||.|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~H--fvsGSdnG~Ia 351 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDEH--FVSGSDNGSIA 351 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecccc--eeeccCCceEE
Confidence 888999999999999998877777777888999999999954 33567889999999999997743 66999999999
Q ss_pred EEECCCCeEEEEEecc----------------CceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 667 YWSINNGSCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~----------------~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+|++-+.+++.+.+.. +.+++.+....+++|+.+|.|++|....
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 9999999988877631 2356778899999999999999997654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-16 Score=166.19 Aligned_cols=238 Identities=14% Similarity=0.191 Sum_probs=188.6
Q ss_pred ccccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeE
Q 004594 469 ISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (743)
Q Consensus 469 ~s~~~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (743)
+.+.+..+.....++++.|||.. .++.+++.|+++++|-. ++.....+
T Consensus 203 lkDaNa~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqv-----------------DGk~N~~l 250 (514)
T KOG2055|consen 203 LKDANAAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQV-----------------DGKVNPKL 250 (514)
T ss_pred ecccccCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEe-----------------cCccChhh
Confidence 33455556666788899999866 58999999999999944 34444566
Q ss_pred EEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEE--EEEccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~-~LaSgs~Dg~V~IWd~~t~~~~--~~l~~H~-~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
..+.-...+|.+++|.|+|. .+++++..+....||+.+.+.. ..+.++. ..+....+++++.+|+..+..|.|.+.
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL 330 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL 330 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee
Confidence 67777778999999999999 9999999999999999886543 2333443 356778889999999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc-----CceeeecCCCEEEEEec
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-----NLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~-----~~i~~s~~g~~L~sgs~ 699 (743)
...++.. +.+++ -.+.|.+++|+.+++.++++|+ +|.|.+||++...|++.+... +.++.+++|.|+++|+.
T Consensus 331 hakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 331 HAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred hhhhhhh-hheee-eccEEeeEEEecCCcEEEEEcC-CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 9888664 66665 5678999999999987775555 889999999999999998742 55788899999999999
Q ss_pred CCeEEEEe-------------------------------------------------------------cc----cceEE
Q 004594 700 NCYLLLHR-------------------------------------------------------------IF----LNLLS 714 (743)
Q Consensus 700 Dg~v~vh~-------------------------------------------------------------~~----v~~l~ 714 (743)
.|.|.|++ .. ..+.+
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 99999922 00 12334
Q ss_pred EeecCCCCEEEEEeCCCcEEEeCCCcc
Q 004594 715 VSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 715 vs~~~~~~~laSgs~DG~V~iWd~~~l 741 (743)
+.+.+.+++++.|..+|+|.+|+-.|+
T Consensus 488 ~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred EEecCCCceEEeecCCCceeeEeeccC
Confidence 455555889999999999999987663
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=178.01 Aligned_cols=214 Identities=19% Similarity=0.203 Sum_probs=155.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg~V~IWd~ 584 (743)
+..|++.+-|.++++|+.... ...-...+.+|++.|.+++|.|+ -..|++|+.||.|.|||+
T Consensus 112 e~~lVsasGDsT~r~Wdvk~s-----------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 112 ESLLVSASGDSTIRPWDVKTS-----------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ceeEEEccCCceeeeeeeccc-----------------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 467889999999999965333 22333457899999999999994 568999999999999998
Q ss_pred CCCe---------------------------EEEEEccCCCCEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCCee-
Q 004594 585 ESFT---------------------------VKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENPDYS- 632 (743)
Q Consensus 585 ~t~~---------------------------~~~~l~~H~~~V~~---l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~~- 632 (743)
+-.. .++....|...|.. +.+.-|...||+++. |+.|+|||+++....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 6321 01112234445555 556667888999988 999999999875421
Q ss_pred ------EEEEecC---CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEEEeccC------ceeeecCCCEEE
Q 004594 633 ------LRTFTGH---STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKVCN------LMPIILKGCFIL 695 (743)
Q Consensus 633 ------l~~l~gh---~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg--~~v~~~~~~~------~i~~s~~g~~L~ 695 (743)
+..+..| .-.+.++..+..|.+++|+|. |+.|.+|++.+. .++..+.++. .-..++++++|+
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1122223 235778888888999999998 999999999864 3444555442 234779999999
Q ss_pred EEecCCeEEEEe---------------cccceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 696 NSIFNCYLLLHR---------------IFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 696 sgs~Dg~v~vh~---------------~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+|+.|....+|. ..+....|.+.. ..-+++|+.|-+|+||+-
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~-~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA-TTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc-CCCceeeccCcceEEEec
Confidence 999999999854 334445555443 456888899999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.8e-17 Score=168.12 Aligned_cols=188 Identities=18% Similarity=0.237 Sum_probs=147.7
Q ss_pred eeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEccCCCCEEEEEEcCC-CCEEEEEe
Q 004594 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs 616 (743)
..+-.+.+|+++|..++|+| +...||+||+|.+|+||.+.. .+++..+.+|...|..|+|||. .+.|+|++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34456789999999999999 667899999999999999864 3567789999999999999996 67889999
Q ss_pred CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc-----eeeecCC
Q 004594 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKG 691 (743)
Q Consensus 617 ~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g 691 (743)
.|.+|.+|++.++.. +.++. |.+.|.++.|+.+|. +|++.+.|..|||||.++++.+..-.+|.. ..|..+|
T Consensus 152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999886 55565 999999999999987 778999999999999999999988766643 5577888
Q ss_pred CEEEEEe---cCCeEEEEeccc--------------ceEEEeecCCCCE-EEEEeCCCcEEEe
Q 004594 692 CFILNSI---FNCYLLLHRIFL--------------NLLSVSEWCNPDE-ISTSSWKDSCCSH 736 (743)
Q Consensus 692 ~~L~sgs---~Dg~v~vh~~~v--------------~~l~vs~~~~~~~-laSgs~DG~V~iW 736 (743)
.++.+|. .+..+.+|+... .++---.+.+... .++|=.|+.|+.|
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 8555553 355677775321 1111112222344 4566689999988
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-17 Score=167.76 Aligned_cols=200 Identities=14% Similarity=0.237 Sum_probs=143.5
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004594 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 508 ~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t 586 (743)
.+.+|..-+.|++|....+. |.. . -.-+.+|+..|..++||| ....||+||.||+|+|||++.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~---------W~v------d-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGS---------WKV------D-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred ccccCccccceEeeeeccCc---------eee------c-CccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 35667667788888543331 111 1 123557999999999999 556899999999999999998
Q ss_pred C---eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 587 ~---~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~--~~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
+ .++. .+.|.+.|..|.|+....+|++|+.||+++|||+|..+ .++..|+.|..+|++|.|+|....+|++++.
T Consensus 290 ~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 290 GPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred CCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 7 3443 38899999999999987799999999999999998643 4578999999999999999998888999999
Q ss_pred CCcEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecCCeEEEEecccceEEEeecCCCCEEEEEeCCCcE
Q 004594 662 NSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSC 733 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~vs~~~~~~~laSgs~DG~V 733 (743)
|..|.+||+....-...... ...+.-.|.--.+ |..+-..++-+.|.... ++++++.+.||..
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF--------VHqGQke~KevhWH~Qi-PG~lvsTa~dGfn 433 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF--------VHQGQKEVKEVHWHRQI-PGLLVSTAIDGFN 433 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEE--------EecchhHhhhheeccCC-CCeEEEeccccee
Confidence 99999999974322111110 0001101111111 11123455666666655 7889999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=158.85 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=157.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp---dg~~LaSgs~Dg~V~IWd 583 (743)
-.+.++|+|.++++|+... ..+...|+ -.+.|++-+|+| .-.+||+|..|-.|++.|
T Consensus 115 GmFtssSFDhtlKVWDtnT-------------------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNT-------------------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ceeecccccceEEEeeccc-------------------ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 4678899999999995432 23333332 235688888888 356899999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEEEe--------------cCCCCeEEEEE
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFT--------------GHSTTVMSLDF 648 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fspd~~~-L~Sgs~Dg~V~vWDl~~~~~~l~~l~--------------gh~~~V~sl~f 648 (743)
+.+|.+..++.||.+.|.+|.|+|...+ |+||+.||.||+||++....|+.++. .|.+.|++++|
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence 9999999999999999999999997654 68999999999999997755655544 46678999999
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCeEEEE-E----------------ecc-CceeeecC--CCEEEEEecCCeEEEEec
Q 004594 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGV-F----------------KVC-NLMPIILK--GCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 649 spdg~~llaSgs~Dg~IrvWDl~tg~~v~~-~----------------~~~-~~i~~s~~--g~~L~sgs~Dg~v~vh~~ 708 (743)
..++.++ ++|+.|..+|+|+..+|+.... + .++ ..+.+.|. +-+|++......|+.|+.
T Consensus 255 tSd~~~l-~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 255 TSDARYL-ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred cccchhh-hhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 9998754 4888899999999988753211 1 011 11223333 335666667777888887
Q ss_pred ccceEEEeecC-CCCEEEEEeCCCcEEEeCC
Q 004594 709 FLNLLSVSEWC-NPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 709 ~v~~l~vs~~~-~~~~laSgs~DG~V~iWd~ 738 (743)
..+.+.++... +-..+++|+.|+.|..|-.
T Consensus 334 h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceeeEEeecCchhhhhccccCCccccccc
Confidence 76666555443 3457899999999999965
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=173.77 Aligned_cols=218 Identities=18% Similarity=0.180 Sum_probs=167.3
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~I 581 (743)
+....+-|.+|+.-.++.+|+.... +......+....-.+++++.+||.++.++++.||.|.|
T Consensus 473 L~pdgrtLivGGeastlsiWDLAap-----------------TprikaeltssapaCyALa~spDakvcFsccsdGnI~v 535 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAV 535 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCC-----------------CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEE
Confidence 4555677778888888888865433 12222333344456888999999999999999999999
Q ss_pred EECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 582 Wd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
||+.+...++.|.||++.+.||.++++|..|-||+-|.+||.||+++++. +... ...+.|.++-++|.++++ +.|-.
T Consensus 536 wDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-lqqh-dF~SQIfSLg~cP~~dWl-avGMe 612 (705)
T KOG0639|consen 536 WDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-LQQH-DFSSQIFSLGYCPTGDWL-AVGME 612 (705)
T ss_pred EEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-hhhh-hhhhhheecccCCCccce-eeecc
Confidence 99999999999999999999999999999999999999999999998765 2221 134789999999998854 47888
Q ss_pred CCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEeecCCCCEEEE
Q 004594 662 NSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEIST 726 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------~~l~vs~~~~~~~laS 726 (743)
++.|-|-...... ...+..|. ++.|.+.|+|+++.+.|..+..|+..- .+++.....+..+|+|
T Consensus 613 ns~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 613 NSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred cCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 8887777665432 22333333 355889999999999999999986542 3445555556889999
Q ss_pred EeCCCcEEEeCCCc
Q 004594 727 SSWKDSCCSHRELY 740 (743)
Q Consensus 727 gs~DG~V~iWd~~~ 740 (743)
||.|.+.-+|.-.|
T Consensus 692 GSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 692 GSGDKKATVYEVIY 705 (705)
T ss_pred cCCCcceEEEEEeC
Confidence 99998888876443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-16 Score=155.78 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=148.7
Q ss_pred ceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEE-----ccCCCCEEEEEEcC--CCCEEE
Q 004594 543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLA 613 (743)
Q Consensus 543 ~~~~~~~~l~-~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~-~~~l-----~~H~~~V~~l~fsp--d~~~L~ 613 (743)
.++..+..+. .+-+.|.||.|.|++..+++-. |..|.+|++..+.. +..+ .+|....++-+|+| +++.++
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 3455555565 5667999999999999888876 88999999987654 3332 23566788889999 577777
Q ss_pred EEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEeccCcee----ee
Q 004594 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKVCNLMP----II 688 (743)
Q Consensus 614 Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t-g~~v~~~~~~~~i~----~s 688 (743)
+. .|+++..||+|+.......-..|...|.+++|+|+..++|++|+.||.|||||.|+ ..++..+.+|..-. |.
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence 76 49999999999866544555678888999999999999999999999999999986 45778888876643 33
Q ss_pred c-CCCEEEEEecCCeEEE-------------------------------------------EecccceEEEeecCCCCEE
Q 004594 689 L-KGCFILNSIFNCYLLL-------------------------------------------HRIFLNLLSVSEWCNPDEI 724 (743)
Q Consensus 689 ~-~g~~L~sgs~Dg~v~v-------------------------------------------h~~~v~~l~vs~~~~~~~l 724 (743)
| ...+|++|+.|..|.+ |..++.+++|+... +-.+
T Consensus 268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad-PWiF 346 (370)
T KOG1007|consen 268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD-PWIF 346 (370)
T ss_pred CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC-CeeE
Confidence 3 3557889999998887 33445556666543 6789
Q ss_pred EEEeCCCcEEEeC
Q 004594 725 STSSWKDSCCSHR 737 (743)
Q Consensus 725 aSgs~DG~V~iWd 737 (743)
++-|+||+|.|=+
T Consensus 347 ASLSYDGRviIs~ 359 (370)
T KOG1007|consen 347 ASLSYDGRVIISS 359 (370)
T ss_pred EEeccCceEEeec
Confidence 9999999998754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=165.85 Aligned_cols=186 Identities=18% Similarity=0.228 Sum_probs=149.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~ 584 (743)
.++|++||.|.+|++|+...+ ++..++..|.+.|.++.|+| ...+|++|+.|++|++.|+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 479999999999999966554 56677888999999999999 6779999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
+............+.|..++|+|. ...++++..||+|+-+|+|....++.++..|.+.|.+|++++..+.++++++.|+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 853333222334678999999995 5567888899999999999998899999999999999999999899999999999
Q ss_pred cEEEEECCCCeE----EEEEeccC--ceeeecCCC-EEEEEecCCeEEEEeccc
Q 004594 664 EIRYWSINNGSC----AGVFKVCN--LMPIILKGC-FILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 664 ~IrvWDl~tg~~----v~~~~~~~--~i~~s~~g~-~L~sgs~Dg~v~vh~~~v 710 (743)
.|++|++..... .+.++... ++++.|+-. +++.|+..+.+++|+...
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999875332 22232222 233445444 477788888899998754
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=147.85 Aligned_cols=191 Identities=17% Similarity=0.292 Sum_probs=141.2
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------e----EEEEEccCCCCEEEEEEcCCC
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------T----VKSTLEEHTQWITDVRFSPSL 609 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~-----------~----~~~~l~~H~~~V~~l~fspd~ 609 (743)
+..+.++ ..+..|.+++|+|.|.+.++|+..++.+|.-.... . ....-+-|.+.|+|++|+|+|
T Consensus 23 f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 3444444 45667999999999999999999999998854321 0 011224588999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCe---------------------------------------------------eEEEEec
Q 004594 610 SRLATSSADRTVRVWDTENPDY---------------------------------------------------SLRTFTG 638 (743)
Q Consensus 610 ~~L~Sgs~Dg~V~vWDl~~~~~---------------------------------------------------~l~~l~g 638 (743)
.+|+||+.|++|++.-.+.... .++.+.|
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999999999986542110 1344556
Q ss_pred CCCCeEEEE-EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-----------cCceeeecCCCEEEEEecCCeEEEE
Q 004594 639 HSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----------CNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 639 h~~~V~sl~-fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-----------~~~i~~s~~g~~L~sgs~Dg~v~vh 706 (743)
|++.|.++. |+ ..+|++|+.|.+||+||++-..|+.++.. ...+++.|.|++|++|..|....+.
T Consensus 182 htghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 182 HTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 777666653 32 35889999999999999999999988753 1347788999999999999877764
Q ss_pred ecc------------cceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 707 RIF------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 707 ~~~------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
++. ..+-++.+.+...++++|++|.+|++-|-.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 332 233344444446799999999999998743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=155.67 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=151.7
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~--~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWD 625 (743)
+.+.+|...|.+|+|+.+|+.|++|+.|++++||+++..+.. ....+|++.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999875433 24468999999999998 478999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEecCCe
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~Dg~ 702 (743)
++.+++ ...... ...-..+.|+|+|. .++.++.|..|.+.|.++.+.+..... .+.+++..++.+++.....|+
T Consensus 94 ~r~~k~-~~~i~~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKC-TARIET-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcE-EEEeec-cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999775 444442 34445689999988 455788888999999999887766543 244677777777777777777
Q ss_pred EEEE------------ecccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 703 LLLH------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 703 v~vh------------~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|.|- .....++++.+.+.+.++++|+.|..|-+||-.
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh
Confidence 7771 234678888888889999999999999999864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=174.23 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=158.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
...+++|+.+++|..|....+. +-..+...+-++++++|+-+|+++|.||+|-.|++-++.
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~-------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGE-------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred ccceEEeeccceEEEeeCCCCC-------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 3578899999999999665442 222344456679999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--------CCCeEEEEEecCCCeEEE
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--------STTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh--------~~~V~sl~fspdg~~lla 657 (743)
+.....++++|+++|.+|.|+|.+.+||+.+.||.|+|||+.++.. ..++.+- ...++.++|+|++..+++
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 9999999999999999999999999999999999999999997653 4443321 345678899999876775
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecc------CceeeecCCCEEEEEecCCeEEEEecc----------cceEEEeecCC
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF----------LNLLSVSEWCN 720 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~------~~i~~s~~g~~L~sgs~Dg~v~vh~~~----------v~~l~vs~~~~ 720 (743)
.+. |+.|++|+..+++....+... ..+.|+|+|.||++++.||.|.||+.. |.+++|.+.++
T Consensus 206 ~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 206 PPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ecc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCC
Confidence 554 889999999999888777652 346799999999999999999999876 45556665544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=157.10 Aligned_cols=192 Identities=17% Similarity=0.182 Sum_probs=140.6
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----EEEEccCCCCEEEEEEcCCCCEE-EEEeCCCeE
Q 004594 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTV 621 (743)
Q Consensus 548 ~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~-----~~~l~~H~~~V~~l~fspd~~~L-~Sgs~Dg~V 621 (743)
+..+++|.+.|+|++|+.||++|||++.|++|+||+++.... ++.- -..+..+.|+|.||.+-+ +++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 456789999999999999999999999999999999986431 1111 112346789999986655 555567789
Q ss_pred EEEECCCCC---eeE--------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----Ccee
Q 004594 622 RVWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMP 686 (743)
Q Consensus 622 ~vWDl~~~~---~~l--------~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~ 686 (743)
++|.+...+ .+. ..-..|.-.|.++-.... ..++++|+.|..|.+||++ |..+..+... ...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 999875422 111 111234445555555444 4588899999999999999 8887777643 3367
Q ss_pred eecCCCEEEEEecCCeEEEEecc--------------------cceEEEeecCCCCEEEEEeCCCcEEEeCCCccc
Q 004594 687 IILKGCFILNSIFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 687 ~s~~g~~L~sgs~Dg~v~vh~~~--------------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~l~ 742 (743)
++|+|+||++++.---|++|..- ..++.+++..+...++|.|.||++++||.+.-|
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 99999999999998888886431 123455556668899999999999999987665
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-16 Score=163.98 Aligned_cols=241 Identities=12% Similarity=0.086 Sum_probs=183.0
Q ss_pred ccccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEE
Q 004594 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL 550 (743)
Q Consensus 471 ~~~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (743)
..++.....+.+.++.|+|... ..+|++|..-|.|-+|+.... ......+..
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~ 229 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYL 229 (498)
T ss_pred ecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCC---------------CCccCceEE
Confidence 3455556677889999999554 268999999999999977411 122234667
Q ss_pred eeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 551 l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~--~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
+..|..+|.++.|+| +-..|++.|.||+|++-|++.... +..+......++.+.|+.+..-++.++.=|...+||++
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR 309 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence 889999999999999 556899999999999999987433 33333244567788888887778888877799999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE-----EEEEec---cCceeeecCCCEEEEEec
Q 004594 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 628 ~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~-----v~~~~~---~~~i~~s~~g~~L~sgs~ 699 (743)
++......+.-|...|++|+++|-.+++|+|||.|++++|||+|.-.. +..+.. ..+..|+|.+..|++.+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 987767777789999999999999999999999999999999986322 223322 245779999999999999
Q ss_pred CCeEEEEeccc---------------------ceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 700 NCYLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~v~vh~~~v---------------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+.|+||+... ..+...+.++-.+|+.|-+-..|-|+|..
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 99999988741 11122223335577888777777777653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=155.24 Aligned_cols=182 Identities=14% Similarity=0.258 Sum_probs=141.0
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-~~~~-~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
...+.|.+|+||| ...+++.||+|++||+|++.. +..+ .....|.++|.|++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567799999999 667788999999999999976 2322 345679999999999999999999999999999999987
Q ss_pred CeeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEeccC-ceeeecCCCEEEEEecCCeEEEEe
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKVCN-LMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~-~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
. +..+..|..+|..+.|-+... .+|++||.|++||+||+|....+.++.... ..+...-...++++..++.|.+..
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 5 677888999999999987633 378899999999999999988888877543 334444455567777777777744
Q ss_pred ccc--------------ceEEEeecCCCCEEEEEeCCCcEEEe
Q 004594 708 IFL--------------NLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 708 ~~v--------------~~l~vs~~~~~~~laSgs~DG~V~iW 736 (743)
... -.-++....+....+-|+..|+|.|.
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 321 11223333335566999999998775
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=159.35 Aligned_cols=232 Identities=14% Similarity=0.208 Sum_probs=176.7
Q ss_pred CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC-CCCeE
Q 004594 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVE 559 (743)
Q Consensus 481 ~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-~~~V~ 559 (743)
.++.+-|.|.+..+++..... +.||.+-.|++|++|..... +-....+.++ ...|.
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE 73 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIE 73 (691)
T ss_pred EEEEEeeeccceEEEEEeccC-----CceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCcee
Confidence 344455566555555554433 66899999999999965443 2233344544 46799
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE-EEEec
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTG 638 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l-~~l~g 638 (743)
.++|++ +..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.++.++.||+||.+..+++..+.... ..|..
T Consensus 74 ~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 74 SLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred eEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence 999995 5567788889999999999999999999999999999999999999999999988888887655322 24555
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--------cCceeee---cCCCEEEEEecCCeEEEEe
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--------CNLMPII---LKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~--------~~~i~~s---~~g~~L~sgs~Dg~v~vh~ 707 (743)
.++.|.+|.|+|++.. +++|+.||.||+||..++..++.... ...+.|+ .....|++|..-|+|.+|+
T Consensus 153 q~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEc
Confidence 6789999999999864 55999999999999999987763321 2334444 3556799999999999987
Q ss_pred ccc------------ceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 708 IFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 708 ~~v------------~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
... .++++....++.+++++|.|++|..+.
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 543 355666666678999999999998774
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-14 Score=148.67 Aligned_cols=209 Identities=10% Similarity=0.040 Sum_probs=147.9
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004594 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTES 586 (743)
Q Consensus 508 ~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSg-s~Dg~V~IWd~~t 586 (743)
++++++.|+.|.+|+...+ ..+..+..+.. +..++|+|+++.++++ +.|+.|++||+++
T Consensus 45 l~~~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATG-------------------EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred EEEEECCCCeEEEEECCCC-------------------cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 4467778899999965432 12223333333 5678999999977654 5689999999998
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg-~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
.+.+..+.. ...+.+++|+|++.+++++..++ .+++||.++... +..+. ....+.+++|+|++..+++++..++.|
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 105 RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEE
Confidence 887777653 34578899999999999888765 577889887553 33332 233567899999998777777779999
Q ss_pred EEEECCCCeEEEEEecc-----------CceeeecCCCEEEEE-ecCCeEEEEeccc-----------ceEEEeecCCCC
Q 004594 666 RYWSINNGSCAGVFKVC-----------NLMPIILKGCFILNS-IFNCYLLLHRIFL-----------NLLSVSEWCNPD 722 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~-----------~~i~~s~~g~~L~sg-s~Dg~v~vh~~~v-----------~~l~vs~~~~~~ 722 (743)
++||+++++++..+... ..+.+++++.+++.+ ..++.+.+|+... ....+.+.+++.
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEK 261 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCC
Confidence 99999999887766421 236788999986554 4566787766421 122334445567
Q ss_pred EEEEE-eCCCcEEEeCCC
Q 004594 723 EISTS-SWKDSCCSHREL 739 (743)
Q Consensus 723 ~laSg-s~DG~V~iWd~~ 739 (743)
+|+++ +.+|.|++||..
T Consensus 262 ~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 77776 569999999865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-15 Score=151.68 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=166.0
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCC----------C--ccc------
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR----------D--RVG------ 534 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~----------~--~~~------ 534 (743)
+....++..++++.|+.|| ..+++++.|++|++|+..+-.... + ..+
T Consensus 80 ~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 3445677788999999988 478999999999999665432100 0 000
Q ss_pred --cccccCCCceeeeEE--------------------EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004594 535 --RSAEVGKGFTFTEFQ--------------------LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (743)
Q Consensus 535 --~~~~~~~~~~~~~~~--------------------~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~ 592 (743)
-+.....+.+...++ .-+-|.-.|..+-....+.+|++++.|.+|.||+++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 000011111111111 112355566677777788999999999999999998 888888
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC----eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 004594 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 593 l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~---~~----~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~I 665 (743)
+......-+..+.+|+|++|++++...-|+||.+-- +. ..+..++||.+.|..++|+++.+ .+++.+.||++
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w 302 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW 302 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence 877666778889999999999999999999998632 11 12567899999999999999976 55699999999
Q ss_pred EEEECCC-------CeEEEEEec--------cCceeeecCCCEEEEEecCCeEEE---------------EecccceEEE
Q 004594 666 RYWSINN-------GSCAGVFKV--------CNLMPIILKGCFILNSIFNCYLLL---------------HRIFLNLLSV 715 (743)
Q Consensus 666 rvWDl~t-------g~~v~~~~~--------~~~i~~s~~g~~L~sgs~Dg~v~v---------------h~~~v~~l~v 715 (743)
||||+.- .+.+++... +-.+.++|.|..|+..... .+.+ |...+..+++
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 9999862 122222211 1236688888887765432 2333 5555555555
Q ss_pred eecCCCCEEEEEeCCCcEEEeC
Q 004594 716 SEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 716 s~~~~~~~laSgs~DG~V~iWd 737 (743)
+.. +.+++||| |..|++..
T Consensus 382 ~~~--g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 382 SSD--GKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCC--CcEEeeec-ceeeeeec
Confidence 554 77888887 56676654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=165.11 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=158.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+++|+.+..||.|.+++...-.. + .+...+.....|...|.++.|-|...+|++++.|.++++||+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred ccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 457899999999999995533210 0 011123455689999999999997778999999999999999
Q ss_pred CCCeEEEE--EccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe------e--------------------EEE
Q 004594 585 ESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LRT 635 (743)
Q Consensus 585 ~t~~~~~~--l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~------~--------------------l~~ 635 (743)
...+++.. +.||++.|.+++|.|. ...|++|+.||.|.|||++.... + +..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 99888776 8999999999999995 66789999999999999874321 0 111
Q ss_pred EecCCCCeEE---EEEecCCCeEEEEEeC-CCcEEEEECCCCeEEEEEe---------------ccCceeeecCCCEEEE
Q 004594 636 FTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK---------------VCNLMPIILKGCFILN 696 (743)
Q Consensus 636 l~gh~~~V~s---l~fspdg~~llaSgs~-Dg~IrvWDl~tg~~v~~~~---------------~~~~i~~s~~g~~L~s 696 (743)
...|...|.+ +.+.-|.. .||+++. |+.|+||||++..+..... +...+.+...|.+|++
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred cccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 2234344444 44445544 6667776 9999999999765432211 1233555677899999
Q ss_pred EecCCeEEEEecccce--------------EEE--eecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 697 SIFNCYLLLHRIFLNL--------------LSV--SEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 697 gs~Dg~v~vh~~~v~~--------------l~v--s~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
...|+.|.+|+..... +.+ ....++.+|++|++|+.+++|....
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 8889999997654211 111 2233467999999999999997543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-15 Score=157.12 Aligned_cols=183 Identities=21% Similarity=0.320 Sum_probs=150.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+.||+.|..-+++.+|....+ ..+..+.+|--.|+|+.|+-||.+|+|||.||.|.+|.+
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred CceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 3478888889999999955444 455666889999999999999999999999999999976
Q ss_pred C---------CCeEEEEEccCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC
Q 004594 585 E---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (743)
Q Consensus 585 ~---------t~~~~~~l~~H~~~V~~l~fspd--~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~ 653 (743)
. +.++++.|..|+-.|+++...+. ..+|+|++.|.++++||+..+.. +.++. ....+.+++.+|.+.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc
Confidence 3 35678899999999999998774 46899999999999999998765 44444 457899999999866
Q ss_pred eEEEEEeCCCcEEEEECCCCe----------------EEEEEecc------CceeeecCCCEEEEEecCCeEEEEecc
Q 004594 654 DLLCSCDNNSEIRYWSINNGS----------------CAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 654 ~llaSgs~Dg~IrvWDl~tg~----------------~v~~~~~~------~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
.++.|+.+|.|.+.++..-. .+..+.+| ++++++.||..|++|+.||.|.||+..
T Consensus 231 -~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 231 -VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred -EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 56689999999998875422 33444454 346788999999999999999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=145.44 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=147.3
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~L-aSgs~Dg~V~IWd~~ 585 (743)
+++++++.|+.+++|+...+ +.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 56788999999999965332 23445555543 6789999999876 567789999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-C
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S 663 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sg-s~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D-g 663 (743)
+++.+..+..+.. +..++|+|+++.++++ ..|+.|++||+++.. .+..+.. ...+.+++|+|++..++ +++.+ .
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~ 137 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN 137 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence 9888777765544 5788999999877554 568999999998754 3555542 34578899999988555 45544 4
Q ss_pred cEEEEECCCCeEEEEEec---cCceeeecCCCEEEEE-ecCCeEEEEecccce-------------------EEEeecCC
Q 004594 664 EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS-IFNCYLLLHRIFLNL-------------------LSVSEWCN 720 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sg-s~Dg~v~vh~~~v~~-------------------l~vs~~~~ 720 (743)
.+++||.++++.+..+.. ...+.+++++.+|+.+ ..++.|.+|+..... ..+....+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 678889998877665432 2447789999988655 468999998754211 11223333
Q ss_pred CCEE-EEEeCCCcEEEeCCC
Q 004594 721 PDEI-STSSWKDSCCSHREL 739 (743)
Q Consensus 721 ~~~l-aSgs~DG~V~iWd~~ 739 (743)
+..+ ++.+.++.|.+||-.
T Consensus 218 g~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CCEEEEEcCCCCeEEEEECC
Confidence 5554 444556789999753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=163.43 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=141.3
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~I 581 (743)
+......+++++.|+++++|..... .......++++.+|++|.++|.|+++.+.+..+++|+.||+|+.
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 4566789999999999999976321 12244567889999999999999999999999999999999999
Q ss_pred EECCC-------C---eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC
Q 004594 582 WCTES-------F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (743)
Q Consensus 582 Wd~~t-------~---~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspd 651 (743)
|++.. . ....++.||++.|+.+++++...+|++|+.||+||+|+......|+.....-.+...+|+|-..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 96531 1 2335678999999999999998899999999999999987655432222212223344544433
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeEEEEEec-----------cCceeeecCCCEEEEEecCCeEEE--------------E
Q 004594 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKV-----------CNLMPIILKGCFILNSIFNCYLLL--------------H 706 (743)
Q Consensus 652 g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-----------~~~i~~s~~g~~L~sgs~Dg~v~v--------------h 706 (743)
..-+.++...-+.-.++|++....+..+.. ...+..+|.+.+.+++.+|+.|++ |
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 211111111112222222222222222221 122444556666666666666665 2
Q ss_pred ecccceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 707 RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 707 ~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
...+..+++... +.+|.+++.|+.|++|+-
T Consensus 531 ~~svtslai~~n--g~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 531 KDSVTSLAIDPN--GPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cceecceeecCC--CceEEeecCCceeehhhc
Confidence 222333333332 556666666666666643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-15 Score=160.77 Aligned_cols=179 Identities=20% Similarity=0.279 Sum_probs=138.7
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 004594 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 556 ~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl 626 (743)
..|++++|.| |...||++++||.|+||.+.. ..+...+.+|...|++++||| -.+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4599999999 888999999999999999865 235567889999999999999 4678999999999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEec-----cCceeeecCCCEEEEEecC
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKV-----CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~-v~~~~~-----~~~i~~s~~g~~L~sgs~D 700 (743)
++... ...+.+|.+.|.+++|+|+|. .+++.+.||+||||..++++. +..-++ ...+.|..+|.++++.+.|
T Consensus 708 ~~~~~-~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKL-YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhh-hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 98765 678999999999999999987 777999999999999987643 222222 1347788999999988887
Q ss_pred Ce----EEEEec--------ccceEEEee-------cCC-CCEEEEEeCCCcEEEe
Q 004594 701 CY----LLLHRI--------FLNLLSVSE-------WCN-PDEISTSSWKDSCCSH 736 (743)
Q Consensus 701 g~----v~vh~~--------~v~~l~vs~-------~~~-~~~laSgs~DG~V~iW 736 (743)
.. |.+++. ....+.+++ +.+ +.++++|-.|.+|.+|
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEE
Confidence 54 222211 111122211 112 4578889999999877
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=144.34 Aligned_cols=209 Identities=15% Similarity=0.167 Sum_probs=152.1
Q ss_pred CCCCCceEEEEecCCCc-------cccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEE
Q 004594 477 NGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ 549 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~-------~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (743)
.++-+.++..|..+... ........+.+ +.-+++|+.|+.|+.++...+ ...
T Consensus 30 vssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--------------------~~~ 88 (323)
T KOG1036|consen 30 VSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--------------------NED 88 (323)
T ss_pred EEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC--------------------cce
Confidence 34556666666654431 11111122333 456789999999999976554 223
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 550 ~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
.+-.|..+|.||.+++....+++||+|++|++||.+....+.++.. ...|.|+... ++.|+.|+.|..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 4567999999999999888999999999999999997555555543 4589998775 679999999999999999986
Q ss_pred CeeEEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----eEEEEEecc-------------CceeeecCC
Q 004594 630 DYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKVC-------------NLMPIILKG 691 (743)
Q Consensus 630 ~~~l~~l-~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg----~~v~~~~~~-------------~~i~~s~~g 691 (743)
....... ..-.-.+.+|++.|+++-++ +++-||.|.|=.++.. +....|++| +.++|+|..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~-~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYV-VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceE-EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 6544221 12234688999999766555 6778999988766654 333455554 458899999
Q ss_pred CEEEEEecCCeEEEEeccc
Q 004594 692 CFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 692 ~~L~sgs~Dg~v~vh~~~v 710 (743)
..+++|+.||.|.+|+...
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred ceEEecCCCceEEEccCcc
Confidence 9999999999999997543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=148.16 Aligned_cols=178 Identities=19% Similarity=0.249 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|+|++|+++|+.|+|++.|..|.+||+..+. +++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999988 577765
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---------cCceeeecCCCEEEEEecCCeEEEEec
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---------CNLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---------~~~i~~s~~g~~L~sgs~Dg~v~vh~~ 708 (743)
..++|+.+.|+|...+.++.+-.+..-.+-++..++. ..+.. .....|.+.|+||++|...|.+.+.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 6789999999998777777776666666666665321 11111 122357899999999999999888432
Q ss_pred c---------------cceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 709 F---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 709 ~---------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
. ++.+.++. .+..++.-..|..|+.|+-.-
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~--~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSR--KGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred chheeeeeeeechheeeeEEEEec--cCcEEEEecCCceEEEEehhh
Confidence 2 22233333 377899999999999997653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=157.68 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=154.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
..++++|+..+.|++|+.... ...+.+++|++.|+|+.++....+||+++..|-|.|..+.
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~k-------------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAK-------------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred ceeeeccCcCceeeehhhHHH-------------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 478999999999999955322 3445678999999999999999999999999999999999
Q ss_pred CCeEEEEEccC-CCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 004594 586 SFTVKSTLEEH-TQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 586 t~~~~~~l~~H-~~~V~~l~fspd~~-~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg 663 (743)
++.....|... ...|.-++|+|..+ +|.+++.+|.|.+||+............|..+...|||+|..+.+|++.+.|+
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence 88776667544 34566899999755 56889999999999998766555667789999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEEEEe
Q 004594 664 EIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
.|.+||++..+...++... +.++|.++|.+|+.|...|.|..++
T Consensus 232 ki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred eEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 9999999987766666543 5688999999999999999988744
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-14 Score=144.55 Aligned_cols=221 Identities=14% Similarity=0.183 Sum_probs=159.4
Q ss_pred ceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEE
Q 004594 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 482 ~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (743)
..++.|++-| .+|+.|+.||.|.+|+. .++..-+.+.+|..+|+|+
T Consensus 26 a~~~~Fs~~G---------------~~lAvGc~nG~vvI~D~-------------------~T~~iar~lsaH~~pi~sl 71 (405)
T KOG1273|consen 26 AECCQFSRWG---------------DYLAVGCANGRVVIYDF-------------------DTFRIARMLSAHVRPITSL 71 (405)
T ss_pred cceEEeccCc---------------ceeeeeccCCcEEEEEc-------------------cccchhhhhhccccceeEE
Confidence 4566677655 69999999999999954 2334556788999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEe--c
Q 004594 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--G 638 (743)
Q Consensus 562 ~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~--g 638 (743)
+||+||++|+|+|.|..|++||+..+.++..+. ...+|+.+.|+|. .+.++.+-.+..-.+-++..+...+-... +
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 999999999999999999999999999888875 5788999999995 34444444455555556554322111110 0
Q ss_pred C-CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc---
Q 004594 639 H-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF--- 709 (743)
Q Consensus 639 h-~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s~~g~~L~sgs~Dg~v~vh~~~--- 709 (743)
. ...-.+..|++.|+ ++++|...|.+.|+|..+-+|+..++..+ .+.++..|.+|+.-+.|.+|+..+..
T Consensus 151 dln~sas~~~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred ccccccccccccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 1 11122335888887 55589999999999999999999887643 47788999999999999999995533
Q ss_pred -----------------cceE---EEeecCCCCEEEEEeC-CCcEEEeCC
Q 004594 710 -----------------LNLL---SVSEWCNPDEISTSSW-KDSCCSHRE 738 (743)
Q Consensus 710 -----------------v~~l---~vs~~~~~~~laSgs~-DG~V~iWd~ 738 (743)
++.+ .+++..++.+++.++. ...++||..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 1111 1233444667766663 346788854
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=176.40 Aligned_cols=234 Identities=17% Similarity=0.205 Sum_probs=172.3
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
......+.|.+.+.+. .-+++.|..||+|.+|+...- ..+.....+..+..|++.|
T Consensus 64 ~~rF~kL~W~~~g~~~-----------~GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V 119 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----------HGLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPV 119 (1049)
T ss_pred cccceeeeecccCCCc-----------cceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCce
Confidence 3445566777766421 157899999999999955331 1233445667788999999
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEc--cCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 559 ~~i~fspd-g~~LaSgs~Dg~V~IWd~~t~~~~~~l~--~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
..+.|++. +++||+|+.||.|.|||+.+.+.-.++. ...+.|.|++|+.. .+.|++++.+|++.|||++..+. +.
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii 198 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-II 198 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-cc
Confidence 99999995 4599999999999999998754433331 24578999999985 66789999999999999998653 55
Q ss_pred EEecCCC--CeEEEEEecCCCeEEEEEeCCC---cEEEEECCCC-eEEEEEeccC----ceeeecCC-CEEEEEecCCeE
Q 004594 635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFKVCN----LMPIILKG-CFILNSIFNCYL 703 (743)
Q Consensus 635 ~l~gh~~--~V~sl~fspdg~~llaSgs~Dg---~IrvWDl~tg-~~v~~~~~~~----~i~~s~~g-~~L~sgs~Dg~v 703 (743)
.+..|.. .+..|.|||+...-+++++.|. .|.+||+|.- ..++++.+|. .+.|++.+ .++++++.|+.|
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 5554443 4789999999877666776553 5999999864 5667776664 35666654 899999999999
Q ss_pred EEEecccc------------eEEEeecC-CCCEEEEEeCCCcEEEeC
Q 004594 704 LLHRIFLN------------LLSVSEWC-NPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 704 ~vh~~~v~------------~l~vs~~~-~~~~laSgs~DG~V~iWd 737 (743)
.+|..... ++.+.+++ ++..+++.+.||+|-|+.
T Consensus 279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 99875431 23333332 267899999999999984
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-14 Score=147.70 Aligned_cols=189 Identities=19% Similarity=0.225 Sum_probs=146.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg~V~IWd~~ 585 (743)
..+++||.|.+|.+|..++....+ ....++..+.+|...|--|.|+|. .+.|++++.|.+|.|||+.
T Consensus 95 ~vIASgSeD~~v~vW~IPe~~l~~------------~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 95 CVIASGSEDTKVMVWQIPENGLTR------------DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred ceeecCCCCceEEEEECCCccccc------------CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 789999999999999887763222 122678899999999999999994 5689999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCeEEEEEe---C
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCD---N 661 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~-V~sl~fspdg~~llaSgs---~ 661 (743)
+++.+.++. |.+-|+++.|+.+|.+|+|.+.|+.|||||.+++.. +..-.+|.+. -..+.|-.+|. ++.+|- .
T Consensus 163 tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~s 239 (472)
T KOG0303|consen 163 TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGK-IFTTGFSRMS 239 (472)
T ss_pred CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCc-eeeecccccc
Confidence 999988887 999999999999999999999999999999999775 6666778753 45566777776 665542 4
Q ss_pred CCcEEEEECCCCe---EEEEEeccCce--e-eecCCCEE-EEEecCCeEEEEeccc
Q 004594 662 NSEIRYWSINNGS---CAGVFKVCNLM--P-IILKGCFI-LNSIFNCYLLLHRIFL 710 (743)
Q Consensus 662 Dg~IrvWDl~tg~---~v~~~~~~~~i--~-~s~~g~~L-~sgs~Dg~v~vh~~~v 710 (743)
+..|-+||..+-+ ....+...+.+ . +.++...| ++|-.|+.|+......
T Consensus 240 eRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 240 ERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 6789999977543 23334443332 2 45666654 4667799998855443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=140.78 Aligned_cols=214 Identities=23% Similarity=0.330 Sum_probs=167.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DKKAVLW 582 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~f-spdg~-~LaSgs~-Dg~V~IW 582 (743)
..+..++.|+.+.+|...... ..+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 78 ~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 78 ELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred cEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 677888899999999654441 2334444433 36777776 78787 5555444 9999999
Q ss_pred ECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 583 CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 583 d~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
|... ......+..|...|.++.|+|++..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++..++++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9988 7888889999999999999999998888886 9999999999744 47888889999999999999875666669
Q ss_pred CCCcEEEEECCCCeEEE-EEeccCce---eeecCCCEEEEEecCCeEEEEecccc-------------eEEEeecCCCCE
Q 004594 661 NNSEIRYWSINNGSCAG-VFKVCNLM---PIILKGCFILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDE 723 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~-~~~~~~~i---~~s~~g~~L~sgs~Dg~v~vh~~~v~-------------~l~vs~~~~~~~ 723 (743)
.|+.|++||...+.++. .+..+... .|++++.++++++.|+.+++|+.... +..+...+....
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCE
Confidence 99999999999888887 57776554 68999989999999999999865421 122233334677
Q ss_pred EEEEeCCCcEEEeCCC
Q 004594 724 ISTSSWKDSCCSHREL 739 (743)
Q Consensus 724 laSgs~DG~V~iWd~~ 739 (743)
+++++.|+.+.+|+..
T Consensus 299 ~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 299 LASGSSDGTVRLWDLE 314 (466)
T ss_pred EEEeeCCCcEEEEEcC
Confidence 8889999999999543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=149.64 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=144.1
Q ss_pred eeEEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEE---ccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg-~~LaSgs~Dg~V~IWd~~t~~~~~~l---~~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
.....+.+|...|+.|.|+|+. ++|++||.|.+||+||+.+..++..| ++|.+.|.++.|++++.+|++|+.|..|
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceE
Confidence 5667789999999999999954 69999999999999999999999887 5799999999999999999999999999
Q ss_pred EEEECCCCCe------------------------e---EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CC
Q 004594 622 RVWDTENPDY------------------------S---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NG 673 (743)
Q Consensus 622 ~vWDl~~~~~------------------------~---l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~-tg 673 (743)
++|++..+.. . ..+-.-|+..|-|+.|.- + +++|=|-++.|..|... -+
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl~ 282 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKLE 282 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchhh
Confidence 9999973221 0 012224677777787774 3 56687878899999872 11
Q ss_pred eE-------------EEEEeccC------ceeeecCCCEEEEEecCCeEEEEecccc----------------eEEEeec
Q 004594 674 SC-------------AGVFKVCN------LMPIILKGCFILNSIFNCYLLLHRIFLN----------------LLSVSEW 718 (743)
Q Consensus 674 ~~-------------v~~~~~~~------~i~~s~~g~~L~sgs~Dg~v~vh~~~v~----------------~l~vs~~ 718 (743)
+. +..+.... ..++.+-+++|+.|...|.|.+|+.... +-..++.
T Consensus 283 e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS 362 (385)
T KOG1034|consen 283 ESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS 362 (385)
T ss_pred hhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec
Confidence 11 12222222 1456688889999999999999875431 1123344
Q ss_pred CCCCEEEEEeCCCcEEEeCC
Q 004594 719 CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 719 ~~~~~laSgs~DG~V~iWd~ 738 (743)
.++..|+....|++|.-||-
T Consensus 363 ~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 363 RDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCcEEEEEeCCCcEEEEEe
Confidence 44778888999999999974
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=160.21 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=156.2
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~I 581 (743)
+...++|+..|...|.|.+|....+- .-..+..-..|.++|+.++....++.+++++.||.+++
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi----------------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGI----------------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCe----------------eecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 44556888888888888888665541 00011122579999999999988999999999999999
Q ss_pred EECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 582 Wd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
||..+...+..+.- ...+.++..+.....++.+..|-.|+++|+.+.+. ++.|.||.+.|++++|+|||++++ +++.
T Consensus 520 w~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWli-sasm 596 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLI-SASM 596 (910)
T ss_pred EecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEE-Eeec
Confidence 99988776666643 45688888888888999999999999999998665 899999999999999999998655 8888
Q ss_pred CCcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEecC-CeEEEEecc
Q 004594 662 NSEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIFN-CYLLLHRIF 709 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~D-g~v~vh~~~ 709 (743)
|++||+||+-++.++..+.. +..+.++|+|.||++...| .-|.+|...
T Consensus 597 D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 597 DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 99999999999999887764 4568899999999999998 568888654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=153.43 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
-.|++......++++|+..++|+|||++...+.+.+++|...|++|.++....+|++++..|.|.|..+.++.. ..+|.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-cccee
Confidence 44555444558999999999999999998888889999999999999999999999999999999999988664 44555
Q ss_pred cC-CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cc----CceeeecC-CCEEEEEecCCeEEEEeccc
Q 004594 638 GH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VC----NLMPIILK-GCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 638 gh-~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~-~~----~~i~~s~~-g~~L~sgs~Dg~v~vh~~~v 710 (743)
.. ...|.-+.|+|..+.+|.+++.+|.|.+||+....+++.+. .| ..++|+|. ...|++-+.|+.|.+++...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 33 34567899999999999999999999999999777665543 23 45889975 55678889999999976542
Q ss_pred c-----------eEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 711 N-----------LLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 ~-----------~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
. ...+.+..++.+|+.|...|.|+.||-+.
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 1 12334444578999999999999998654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=152.45 Aligned_cols=203 Identities=13% Similarity=0.194 Sum_probs=158.5
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004594 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (743)
Q Consensus 508 ~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~ 587 (743)
-|.+.+.++.|.-|+..+ .+....+....+.|.+++.+|.+..++.||+||.+.+++...+
T Consensus 82 RLFS~g~sg~i~EwDl~~-------------------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHT-------------------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred eEEeecCCceEEEEeccc-------------------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 467777889999995433 4666777788899999999999999999999998888887765
Q ss_pred eEE--EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-------Eec-CCCCeEEEEEecCCCeEEE
Q 004594 588 TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------FTG-HSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 588 ~~~--~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~-------l~g-h~~~V~sl~fspdg~~lla 657 (743)
+.. +.|...+++|.++.|+|++..|++|+.||.|++||+.++.. +.. +.. ....|++|.|-.++ .++
T Consensus 143 ~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~ 219 (691)
T KOG2048|consen 143 KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIA 219 (691)
T ss_pred eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEE
Confidence 543 34555679999999999999999999999999999998765 331 111 23458888888665 688
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccC----ceeeecCCCEEEEEecCCeEEEE------------------ecccceEEE
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLH------------------RIFLNLLSV 715 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~v~vh------------------~~~v~~l~v 715 (743)
+|+..|+|.+||...+..+..++.|. +++..+++.++++++-|+.|... ...+..+++
T Consensus 220 sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeee
Confidence 99999999999999999988888764 36677889999999999987652 222333333
Q ss_pred eecCCCCEEEEEeCCCcEEEe
Q 004594 716 SEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 716 s~~~~~~~laSgs~DG~V~iW 736 (743)
. +..+++||.|.++.+-
T Consensus 300 ~----~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 300 I----ENALISGGRDFTLAIC 316 (691)
T ss_pred e----cceEEecceeeEEEEc
Confidence 3 3389999999988765
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=140.09 Aligned_cols=187 Identities=15% Similarity=0.151 Sum_probs=136.3
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEccCCCCEEEEEEcC-C-CCEEEEEeCCCeEEEEE
Q 004594 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-S-LSRLATSSADRTVRVWD 625 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t----~~~~~~l~~H~~~V~~l~fsp-d-~~~L~Sgs~Dg~V~vWD 625 (743)
.+|.+-|.|+.|.+.|+.+|||+.|.+|+|||.+. ..+....+.|.+.|..|.|.+ . |..+++++.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47889999999999999999999999999999643 456677889999999999955 4 89999999999999997
Q ss_pred CCCC--------CeeEEEEecCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCeEE------EEEe-------cc-
Q 004594 626 TENP--------DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA------GVFK-------VC- 682 (743)
Q Consensus 626 l~~~--------~~~l~~l~gh~~~V~sl~fspdg-~~llaSgs~Dg~IrvWDl~tg~~v------~~~~-------~~- 682 (743)
-... -....++....+.|++|.|.|.. ...+|+++.||.||||+.-....+ +.+. .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 12245677778899999999972 347889999999999987543322 2222 01
Q ss_pred ---Cceeeec---CCCEEEEEecC-----CeEEE------------------EecccceEEEeecCC--CCEEEEEeCCC
Q 004594 683 ---NLMPIIL---KGCFILNSIFN-----CYLLL------------------HRIFLNLLSVSEWCN--PDEISTSSWKD 731 (743)
Q Consensus 683 ---~~i~~s~---~g~~L~sgs~D-----g~v~v------------------h~~~v~~l~vs~~~~--~~~laSgs~DG 731 (743)
.++.+.+ ...+|+.|+.+ +.+.| |...+..++|.+.-. -..|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 1233332 23457777766 23333 345566677765532 24789999999
Q ss_pred cEEEeCCC
Q 004594 732 SCCSHREL 739 (743)
Q Consensus 732 ~V~iWd~~ 739 (743)
|+||+-.
T Consensus 250 -v~I~~v~ 256 (361)
T KOG2445|consen 250 -VRIFKVK 256 (361)
T ss_pred -EEEEEEe
Confidence 9999643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=158.65 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=145.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~ 585 (743)
.-|+.++.|+.|++|....+.. ...+.++...+..|..+|+++.|+| -...|+++++|-+|+|||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl------------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGL------------PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCC------------CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 5678999999999997655421 2234456778899999999999999 66789999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEe---C
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD---N 661 (743)
Q Consensus 586 t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~-~~V~sl~fspdg~~llaSgs---~ 661 (743)
+.+....+.+|++.|..++|+|+|++++|.+.||+|+||..+.+..++..-.+.. ..--.|.|..+|+.++++|- .
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 9999999999999999999999999999999999999999998776665544322 23356889999987776653 2
Q ss_pred CCcEEEEECCCCe--EEEEEe--ccCc--e-eeecCCC-EEEEEecCCeEEEEecccc
Q 004594 662 NSEIRYWSINNGS--CAGVFK--VCNL--M-PIILKGC-FILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 662 Dg~IrvWDl~tg~--~v~~~~--~~~~--i-~~s~~g~-~L~sgs~Dg~v~vh~~~v~ 711 (743)
...|.+||..+-. .+.+.. .... + .+.+|.. .+++|-.|.+|.++...-.
T Consensus 789 eRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred hhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 3568889876532 222221 1111 1 2344544 5677888888888655433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=158.86 Aligned_cols=194 Identities=18% Similarity=0.273 Sum_probs=151.0
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~D-----g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
+.+++.+.||...|+|++.+|+|++|||++.. -.|+||+..+...+..+.+|.-.|+.++|+||+++|++.+.|.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 34567778999999999999999999999864 4589999998888889999999999999999999999999999
Q ss_pred eEEEEECCCCCee---EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEEEe------ccCceeee
Q 004594 620 TVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK------VCNLMPII 688 (743)
Q Consensus 620 ~V~vWDl~~~~~~---l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg--~~v~~~~------~~~~i~~s 688 (743)
++.+|........ ....+.|+..|.+.+|+|++. .|+|+|.|.+|+||..... +++..+. ..+.+++.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 9999987543221 234678999999999999976 5889999999999998877 4443322 12334433
Q ss_pred c-----CCCEEEEEecCCeEEEEecc--------------------------cceEEEeecC--------CCCEEEEEeC
Q 004594 689 L-----KGCFILNSIFNCYLLLHRIF--------------------------LNLLSVSEWC--------NPDEISTSSW 729 (743)
Q Consensus 689 ~-----~g~~L~sgs~Dg~v~vh~~~--------------------------v~~l~vs~~~--------~~~~laSgs~ 729 (743)
+ .+..++.|-+.|.|.+|+-. +..+.|.+.+ ....+++|+.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 2 23367888889999986622 3445555442 1335799999
Q ss_pred CCcEEEeCCC
Q 004594 730 KDSCCSHREL 739 (743)
Q Consensus 730 DG~V~iWd~~ 739 (743)
|.++++++-.
T Consensus 754 D~~vri~nv~ 763 (764)
T KOG1063|consen 754 DESVRIFNVD 763 (764)
T ss_pred cceeEEeecc
Confidence 9999998754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-13 Score=132.94 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=150.0
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~I 581 (743)
+.+..++++.|+.+|.|.++....-..... +......+...++|.++|+.++|+ ..+|++|+ ||.|+-
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 344558999999999999985543221111 122223455568999999999997 45677776 699998
Q ss_pred EECCCCeE----EE----EEccCC-----CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 004594 582 WCTESFTV----KS----TLEEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 582 Wd~~t~~~----~~----~l~~H~-----~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~f 648 (743)
|..+.... .+ ...-|. ..|.++-..|..+-|++++.|+.++.||+++++. .++++||++.|.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeee
Confidence 87654221 10 111222 3588899999877777777999999999999875 8899999999999988
Q ss_pred ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc------------eeeecCCCEEEEEecCCeEEEEecc-cceEE-
Q 004594 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL------------MPIILKGCFILNSIFNCYLLLHRIF-LNLLS- 714 (743)
Q Consensus 649 spdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~------------i~~s~~g~~L~sgs~Dg~v~vh~~~-v~~l~- 714 (743)
-.....+| +|++||++||||+++++++..+..... .++..+..|+++|+.-. +.+|... ....+
T Consensus 165 R~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-lslwhLrsse~t~v 242 (325)
T KOG0649|consen 165 RNANGQIL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-LSLWHLRSSESTCV 242 (325)
T ss_pred cccCccee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc-eeEEeccCCCceEE
Confidence 44334355 999999999999999999988764211 45667788888887653 4444322 22222
Q ss_pred ---------EeecCCCCEEEEEeCCCcEEEeC
Q 004594 715 ---------VSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 715 ---------vs~~~~~~~laSgs~DG~V~iWd 737 (743)
+.+. ...+++++.-..|..|.
T Consensus 243 fpipa~v~~v~F~--~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 243 FPIPARVHLVDFV--DDCVLIGGEGNHVQSYT 272 (325)
T ss_pred EecccceeEeeee--cceEEEeccccceeeee
Confidence 1222 45677777666666653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=155.72 Aligned_cols=224 Identities=12% Similarity=0.123 Sum_probs=175.5
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW 582 (743)
.+.++.+++.-.+.....|.......++-.... ..++.-...++||+.++.|++.+.|...|+|-+|
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~-------------~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP-------------KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecC-------------ccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 344566666666777788866554322211110 0111133568999999999999999999999999
Q ss_pred ECCCCeEEEEE---ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 004594 583 CTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 583 d~~t~~~~~~l---~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSg 659 (743)
|+.+|-....+ ..|..+|+.++...-++.+++++.+|.+++||..+.. .+..+. -...+.++..+.... +++.+
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~-l~a~~ 552 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSD-LLAIA 552 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhh-hhhhh
Confidence 99999888888 4899999999998888899999999999999998754 344443 445688888887754 67777
Q ss_pred eCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEeecCCCCEE
Q 004594 660 DNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEI 724 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------~~l~vs~~~~~~~l 724 (743)
..|-.|+|+|+.+.+.++.|.+| +.++|+|||+||++++.|++|++|+... .+..++..+++.+|
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEE
Confidence 77999999999999999999987 4589999999999999999999999764 23455666678899
Q ss_pred EEEeCC-CcEEEeCCCccc
Q 004594 725 STSSWK-DSCCSHRELYLY 742 (743)
Q Consensus 725 aSgs~D-G~V~iWd~~~l~ 742 (743)
||...| .-|++|-...+|
T Consensus 633 AT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred EEEEecCceEEEEEchhHh
Confidence 999999 579999776655
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=170.12 Aligned_cols=219 Identities=17% Similarity=0.306 Sum_probs=165.1
Q ss_pred cccCCCCCceEEEEecCCC---cc---------ccccCcc--ccCC-CCEEEEeeCCCcEEEEecCCCCCCCCccccccc
Q 004594 474 LQHNGASSKSLLMFGSDGM---GS---------LTSAPNQ--LTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~---~~---------l~~~~~~--l~d~-~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~ 538 (743)
+...|..+..+..|+++.. .. +..+... |... ++++++|+.|+.|.+|+......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t---------- 151 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET---------- 151 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------
Confidence 4556667777777777652 00 1111111 2222 36999999999999997765421
Q ss_pred cCCCceeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCC--CEEEEEEcCC-CCEEEE
Q 004594 539 VGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPS-LSRLAT 614 (743)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~--~V~~l~fspd-~~~L~S 614 (743)
.++.. -....+.|.|++|+. ....||+++.+|++.|||++..+.+..+..|.+ .+..|+|||+ ...|++
T Consensus 152 ---P~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 152 ---PFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ---CCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 11111 112345699999987 456789999999999999999888877777655 4778999997 566777
Q ss_pred EeCC---CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----Cceee
Q 004594 615 SSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPI 687 (743)
Q Consensus 615 gs~D---g~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~ 687 (743)
++.| -.|.+||+|....+++++.+|...|.+|.|++.+..+++||+.|+.|.+|+.++++.+..+... ..+.|
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w 304 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW 304 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee
Confidence 7664 4699999999888899999999999999999999889999999999999999999999988873 34566
Q ss_pred ecCCC-EEEEEecCCeEEEEecc
Q 004594 688 ILKGC-FILNSIFNCYLLLHRIF 709 (743)
Q Consensus 688 s~~g~-~L~sgs~Dg~v~vh~~~ 709 (743)
.|..- .+++.+.||.|.|....
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred cCCCcchhhhheeccceeeeeee
Confidence 66554 78888999999995443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-13 Score=143.61 Aligned_cols=202 Identities=19% Similarity=0.232 Sum_probs=153.2
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004594 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 509 l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
+++|..+|+|.+|.. ......+....|.+.|.+++.-.+|.+|- |+.|++|..||- ..+
T Consensus 260 viTgDS~G~i~Iw~~-------------------~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~-~y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSK-------------------GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD-NYR 318 (626)
T ss_pred EEeecCCceEEEEeC-------------------CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccc-ccc
Confidence 688999999999933 12233344449999999999999998665 999999999983 211
Q ss_pred E------------EE-----------------------------EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 589 V------------KS-----------------------------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 589 ~------------~~-----------------------------~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
. ++ +..+|......++.+|+...++|++.|+.|++|+ .
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~ 397 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D 397 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C
Confidence 1 11 1136888899999999999999999999999999 2
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEE
Q 004594 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 628 ~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~ 704 (743)
...+.+.. -..++.+++|+|.| .++.|...|..-|.|.++...+..-... +.+.++|+|.+|+.|+.|+.|.
T Consensus 398 --~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 398 --HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred --CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 22222222 35678999999998 6778999999999999996655544442 3477999999999999999999
Q ss_pred EEec----------------ccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 705 LHRI----------------FLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 705 vh~~----------------~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+... .+..+.|+ .++.++.+-+.|-.|..|+..
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS--~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWS--SDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeec--CCCceEEeccCceEEEEEccc
Confidence 8432 23344444 447899999999999999543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=140.65 Aligned_cols=161 Identities=21% Similarity=0.384 Sum_probs=127.2
Q ss_pred CceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE
Q 004594 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (743)
Q Consensus 481 ~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~ 560 (743)
.+.|+.|.|++. -+++-. |.+|.+|........ ...+.. ..-.+|....++
T Consensus 125 ~i~cvew~Pns~---------------klasm~-dn~i~l~~l~ess~~---vaev~s----------s~s~e~~~~fts 175 (370)
T KOG1007|consen 125 KINCVEWEPNSD---------------KLASMD-DNNIVLWSLDESSKI---VAEVLS----------SESAEMRHSFTS 175 (370)
T ss_pred ceeeEEEcCCCC---------------eeEEec-cCceEEEEcccCcch---heeecc----------cccccccceecc
Confidence 778999999775 233332 889999976554321 001000 001125566788
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEE-ccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 561 i~fsp--dg~~LaSgs~Dg~V~IWd~~t~~~~~~l-~~H~~~V~~l~fspd~-~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
-+|+| +|+.+++.+ |+++..||+++.++...+ ..|...|.++.|+|+. .+|+||+.||.||+||.|..+.++..+
T Consensus 176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 89998 888888877 899999999987766555 4688899999999974 568999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
.+|...|.+|.|+|....++.+++.|..|.+|...
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 99999999999999988899999999999999764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=148.47 Aligned_cols=214 Identities=18% Similarity=0.124 Sum_probs=149.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..+.+.|+||++++-+.... ...++..+......+..+.|+.+...++.|..=|...+||.++
T Consensus 248 s~i~ssSyDGtiR~~D~~~~-----------------i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGN-----------------ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred hheeeeccCceeeeeeecch-----------------hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 56788899999999865433 2233333333344577888988887788887777999999998
Q ss_pred CeE-EEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--e-eEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 587 FTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 587 ~~~-~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~--~-~l~~l~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
.+. ...+.-|...|..|+++|. ..+|+||+.|++++|||++.-. . ++.....|...|.+..|+|++..++ |.+.
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~ 389 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQ 389 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE-eecc
Confidence 554 6667789999999999995 5678999999999999998632 2 2334446999999999999988755 6667
Q ss_pred CCcEEEEECC----CCeEEEEEeccC---------ceeeecCCCEEEEEecCCeEEEEecccce-------------EEE
Q 004594 662 NSEIRYWSIN----NGSCAGVFKVCN---------LMPIILKGCFILNSIFNCYLLLHRIFLNL-------------LSV 715 (743)
Q Consensus 662 Dg~IrvWDl~----tg~~v~~~~~~~---------~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~-------------l~v 715 (743)
|.+|||||.. .......+...+ ...|.|+..+|++|..-..|-|.+....- .++
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~v 469 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSV 469 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccc
Confidence 9999999983 333333333211 14688999999999887777664433222 122
Q ss_pred eecCC-CC-EEEEEeCCCcEEEeCC
Q 004594 716 SEWCN-PD-EISTSSWKDSCCSHRE 738 (743)
Q Consensus 716 s~~~~-~~-~laSgs~DG~V~iWd~ 738 (743)
....+ .. +++.++.-|.|+||-.
T Consensus 470 n~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 470 NEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eeecccccceeccCCccceEEEEec
Confidence 22222 33 4455557788888854
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-14 Score=156.88 Aligned_cols=189 Identities=16% Similarity=0.287 Sum_probs=150.7
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKK 578 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp---dg~~LaSgs~Dg~ 578 (743)
+.+....|++|..-|++++++. ........++.|...|.|+.|+. ..++||+|+.|..
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~L-------------------q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl 527 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDL-------------------QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL 527 (1080)
T ss_pred ECCCcceecccCccCceEEEEe-------------------hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce
Confidence 3444578999999999999943 33355667789999999999986 5679999999999
Q ss_pred EEEEECCC-CeEEEEEccCCCC-------------------------------------------------EEEEEEcCC
Q 004594 579 AVLWCTES-FTVKSTLEEHTQW-------------------------------------------------ITDVRFSPS 608 (743)
Q Consensus 579 V~IWd~~t-~~~~~~l~~H~~~-------------------------------------------------V~~l~fspd 608 (743)
|.|||+.. ...+.++.+|... +++++..|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 99999852 3333334333333 556666666
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---
Q 004594 609 LSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--- 682 (743)
Q Consensus 609 ~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g---h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~--- 682 (743)
.+++++++.|..|+|||+..++. ++.|++ |++...-|...|.|-++. +...|++|.|+|.-+|+|+....+|
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~a-tScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLA-TSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred cceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEE-EeecCCceEEEEeccchhhhhhcCcchh
Confidence 68899999999999999998775 777774 667788899999987555 5555999999999999999999887
Q ss_pred -CceeeecCCCEEEEEecCCeEEEEecccc
Q 004594 683 -NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 683 -~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~ 711 (743)
+.+.|.+|-+.|++.+.||.|.||.....
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECchh
Confidence 45779999999999999999999987653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-14 Score=147.04 Aligned_cols=157 Identities=23% Similarity=0.385 Sum_probs=131.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~- 585 (743)
.++++|+.|..|++|....+.... ...+......+..|...|++|.|+|+|.+||+|+++|.|.+|-..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred cceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence 389999999999999766543221 124667788899999999999999999999999999999999654
Q ss_pred -------C--------CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 004594 586 -------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (743)
Q Consensus 586 -------t--------~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fsp 650 (743)
+ ......+.+|...|++++|+|++.++++++.|.++++||+..+.. +..+.+|...|..++|.|
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDP 175 (434)
T ss_pred cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecch
Confidence 2 234566788999999999999999999999999999999998775 788899999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeE
Q 004594 651 SKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 651 dg~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
-.. ++++-+.|...+++++.....
T Consensus 176 l~q-yv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 176 LNQ-YVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred hhh-hhhhhccCcccceeeeeeeee
Confidence 865 566777788788887765443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-15 Score=159.21 Aligned_cols=127 Identities=20% Similarity=0.403 Sum_probs=112.2
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ccCCCCEEEEEEcC--CCCEEEEEeCCCeEEE
Q 004594 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (743)
Q Consensus 547 ~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l-~~H~~~V~~l~fsp--d~~~L~Sgs~Dg~V~v 623 (743)
.-..+.||++.|+|+.|+.+|.+|++|++|-.+.|||.-..+.+..+ .+|+..|.|+.|-| +.++++||..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34567899999999999999999999999999999999887777666 68999999999999 4678899999999999
Q ss_pred EECCC---------CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 004594 624 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 624 WDl~~---------~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg 673 (743)
+|+.. .......+..|...|..|+-.|++++.|-++++||+||-+|++..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 99985 223456677899999999999999999999999999999999863
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=143.46 Aligned_cols=148 Identities=16% Similarity=0.220 Sum_probs=118.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd 583 (743)
...++++-..+.|++|+... ...+..+++|...+..++|.. ....+.+|+.||+|++||
T Consensus 40 e~~vav~lSngsv~lyd~~t-------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGT-------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEecCCeEEEEeccc-------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 35678888889999994422 345667788888889999976 467899999999999999
Q ss_pred CCCCeEE--EEEccCC-CCEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCeE
Q 004594 584 TESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 584 ~~t~~~~--~~l~~H~-~~V~~l~fspd~~~L~Sgs~----Dg~V~vWDl~~~~~~l~-~l~gh~~~V~sl~fspdg~~l 655 (743)
+++.... ..+..|. .+..|++.+..++.+++|.. |-.|.+||+|.....+. .+..|...|++|+|||..+++
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 9975443 3445565 56677877767788888864 78899999998665333 456799999999999999999
Q ss_pred EEEEeCCCcEEEEECCC
Q 004594 656 LCSCDNNSEIRYWSINN 672 (743)
Q Consensus 656 laSgs~Dg~IrvWDl~t 672 (743)
|+|||.||.|.|||++.
T Consensus 181 LlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKK 197 (376)
T ss_pred EEeecccceEEeeecCC
Confidence 99999999999999864
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-15 Score=150.04 Aligned_cols=78 Identities=32% Similarity=0.739 Sum_probs=65.5
Q ss_pred CccccHHHHHHHHHHHHhhcCChHHHHHHHHhcCCCCCCCCCCCCCCcchHHHHHHHHHHhhhcccc----ccccchhhh
Q 004594 3 QNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASY 78 (743)
Q Consensus 3 ~~~~~~~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eWw~~fwd~f~A~~~~----~~s~~a~qY 78 (743)
.++-.||++|..||||||++-+..++|+.|+.|..+..+ +.+-.+.+||.+|||+|||+|+|...+ .|+..++.+
T Consensus 11 pSd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaF 89 (354)
T KOG4594|consen 11 PSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAF 89 (354)
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhh
Confidence 356789999999999999999999999999999887776 456677899999999999999995444 666666665
Q ss_pred hHH
Q 004594 79 IES 81 (743)
Q Consensus 79 iq~ 81 (743)
.++
T Consensus 90 hdy 92 (354)
T KOG4594|consen 90 HDY 92 (354)
T ss_pred hhh
Confidence 554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=152.39 Aligned_cols=249 Identities=14% Similarity=0.170 Sum_probs=179.0
Q ss_pred cccCCCCCceEEEEecCCCcc----------ccccC-----ccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccc
Q 004594 474 LQHNGASSKSLLMFGSDGMGS----------LTSAP-----NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (743)
Q Consensus 474 l~~~~s~~~s~~~fs~d~~~~----------l~~~~-----~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~ 538 (743)
...+++.|+++++|.|+.... ++... ..+.+..+++.+-+.-|-.++|.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk---------------- 344 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK---------------- 344 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe----------------
Confidence 345677888888888886521 11111 11233345555555556666663
Q ss_pred cCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEccCCCCEEEEEEcCCCCEEEE
Q 004594 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (743)
Q Consensus 539 ~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t----~~~~~~l~~H~~~V~~l~fspd~~~L~S 614 (743)
..+...+.....+.||.+.|.+|+|+|.|.+|++.+.|-+-|||-.-. .-.+..-.-|...++|++|-+....|++
T Consensus 345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeee
Confidence 223334555667789999999999999999999999999999986431 1122333458888999999987678999
Q ss_pred EeCCCeEEEEECCC-------------------------------------------CCe--------------------
Q 004594 615 SSADRTVRVWDTEN-------------------------------------------PDY-------------------- 631 (743)
Q Consensus 615 gs~Dg~V~vWDl~~-------------------------------------------~~~-------------------- 631 (743)
|...+.+|+|+... +..
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 99999999998620 000
Q ss_pred ------------eEEEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEEEEEecc----CceeeecC
Q 004594 632 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKVC----NLMPIILK 690 (743)
Q Consensus 632 ------------~l~~l~gh~~~V~sl~fspdg~~llaSgs~D-----g~IrvWDl~tg~~v~~~~~~----~~i~~s~~ 690 (743)
.++.+.||.-.|++++.+|+++ ++||++.. ..|++|+..+...+..+.+| +.+.|+||
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC
Confidence 1234558999999999999976 78787644 45999999988877778777 45889999
Q ss_pred CCEEEEEecCCeEEEEeccc--------------ceEEE--eecCCCCEEEEEeCCCcEEEeCCC
Q 004594 691 GCFILNSIFNCYLLLHRIFL--------------NLLSV--SEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 691 g~~L~sgs~Dg~v~vh~~~v--------------~~l~v--s~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|+||++.+.|+++.+|.... +.+.| ++.+++.+++|+|.|.+|++|...
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 99999999999999975421 11222 334557789999999999999654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=150.70 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=135.2
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC--EEEEEeCCC
Q 004594 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR 619 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~--~L~Sgs~Dg 619 (743)
.+.......+++|++.|.||...|.|.+|++|+.||+|+||.+.++.|++++. ..+.|.||+|+|.+. .|+++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc
Confidence 44555666789999999999999999999999999999999999999998875 355788888888543 233332222
Q ss_pred eEEEEEC-------------------------------------------------------------------------
Q 004594 620 TVRVWDT------------------------------------------------------------------------- 626 (743)
Q Consensus 620 ~V~vWDl------------------------------------------------------------------------- 626 (743)
+.|-+.
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 222221
Q ss_pred ---------CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec----cCceeeecCCCE
Q 004594 627 ---------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCF 693 (743)
Q Consensus 627 ---------~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~ 693 (743)
..... ..-|....+.|.++.|||...++|++ + -..|||||+...+.++.+.. .+.+++++.|..
T Consensus 545 ~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred cceEEEEecccccc-cCchhhcCCceeEEEecCCCceEEEE-e-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 11000 11122234568999999998877744 3 45799999987765554432 356889999999
Q ss_pred EEEEecCCeEEEEecccc-------------eEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 694 ILNSIFNCYLLLHRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 694 L~sgs~Dg~v~vh~~~v~-------------~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
|+.|+.|+.+.+++.... +.++.....=-++++|+.||+|.|+.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999999999765443 12233333234899999999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=133.49 Aligned_cols=234 Identities=14% Similarity=0.142 Sum_probs=171.6
Q ss_pred EEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEc
Q 004594 485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564 (743)
Q Consensus 485 ~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fs 564 (743)
..|+||| ..+.+-+.|..+.+|..+.+......-.... ......++... ...|+..+|-
T Consensus 55 ckWSPDG---------------SciL~~sedn~l~~~nlP~dlys~~~~~~~~----~~~~~~~r~~e--g~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDG---------------SCILSLSEDNCLNCWNLPFDLYSKKADGPLN----FSKHLSYRYQE--GETVYDYCWY 113 (406)
T ss_pred ceeCCCC---------------ceEEeecccCeeeEEecChhhcccCCCCccc----cccceeEEecc--CCEEEEEEee
Confidence 5799988 4788889999999998765543222111110 01111222222 3458888874
Q ss_pred -------CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc--CCC---CEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCCe
Q 004594 565 -------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDT-ENPDY 631 (743)
Q Consensus 565 -------pdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~--H~~---~V~~l~fspd~~~L~Sgs~Dg~V~vWDl-~~~~~ 631 (743)
|+..++|+.+.|.-|++||.-+++....+.+ |-+ ...+++|+|||.+|+.| ....|||||+ |.++.
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 5778999999999999999999988777654 322 35689999999999876 5889999999 44443
Q ss_pred e-EEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEec-C
Q 004594 632 S-LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIF-N 700 (743)
Q Consensus 632 ~-l~~l~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~-D 700 (743)
| +.... +..+.|.+++|+|....+++.++...++-||.-..+.++..+.+| +.+.|.++|+.|++|.. |
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence 2 12111 336789999999998889999999999999988888888887765 45789999999999965 5
Q ss_pred CeEEEEeccc----------------ceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 701 CYLLLHRIFL----------------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 701 g~v~vh~~~v----------------~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
-.|..|++.- -.+-+...+.+..|++|+.||.|++||..-
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 5777787542 234566666788999999999999998653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=142.51 Aligned_cols=224 Identities=16% Similarity=0.236 Sum_probs=158.8
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
+.+.+..+.|.|||. .++.. .+..+.+|+..++ ..+.++++|++.
T Consensus 11 ~~hci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKDt 55 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKDT 55 (1081)
T ss_pred cccchheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccce
Confidence 344667788999986 33333 2456888866665 567889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------EEEEE---------------------------ccC--CCCE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--------VKSTL---------------------------EEH--TQWI 600 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~--------~~~~l---------------------------~~H--~~~V 600 (743)
|+|++|+.||++||+|+.|+.|.||+..-.. .+..+ ..| ..+|
T Consensus 56 VycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~ 135 (1081)
T KOG1538|consen 56 VYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRI 135 (1081)
T ss_pred EEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeE
Confidence 9999999999999999999999999754211 11110 012 3467
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCCeEEEEEecCC----CeEEEEEeCCCcEEEEECCCCeE
Q 004594 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 601 ~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~-~l~~l~gh~~~V~sl~fspdg----~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
.+++|..||.+|+.|-.||+|.+-+-..... .+..-.|..++|++++|+|.. ..+++......++.+|.+. |+.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQ 214 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-cee
Confidence 8889999999999999999999886443221 122233567899999999963 2477788888889998887 444
Q ss_pred EEEEec----cCceeeecCCCEEEEEecCCeEEEEeccc-----------ceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 676 AGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 676 v~~~~~----~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
+..-+. ...+.+.++|.|++.|+.|+.+.+..-.. -...+...+++..++.|.-||+|.-|+
T Consensus 215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 332221 23466779999999999999988843221 112233345578999999999997664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-13 Score=137.24 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=138.7
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe
Q 004594 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY 631 (743)
Q Consensus 554 H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~ 631 (743)
..+.|.|++|+| +.+.++.|+....+-||+-....++..+.+|.+.|+.++|+++|+.|++|.. |..|.+||+|....
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 367899999999 6669999999999999999999999999999999999999999999999986 89999999999888
Q ss_pred eEEEEecCCC-CeEEEEE--ecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEec----cCceeeecCCCEEEEEecCCeE
Q 004594 632 SLRTFTGHST-TVMSLDF--HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKV----CNLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 632 ~l~~l~gh~~-~V~sl~f--spdg~~llaSgs~Dg~IrvWDl~t-g~~v~~~~~----~~~i~~s~~g~~L~sgs~Dg~v 703 (743)
++..+.+|.. .-..|-| .|+++ +|++|+.||.|++||+.+ |..+..+.. .+.+.++|.-..+++++.....
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCceee
Confidence 8888888876 4445555 46665 888999999999999998 655555543 3557788887777777665544
Q ss_pred EEEecccce----EEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 704 LLHRIFLNL----LSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 704 ~vh~~~v~~----l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
..-+..... +......+...+.++.....+..||+.
T Consensus 365 ~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~~~w~d~~ 404 (406)
T KOG2919|consen 365 KYPKDDNGELETELEEEADENEKQLWTGYVSALQVWMDGQ 404 (406)
T ss_pred cCCCcccccccccccchhhhhhhheeeeecccceeeecCC
Confidence 442221111 111111113456666666666666654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-12 Score=133.44 Aligned_cols=193 Identities=26% Similarity=0.340 Sum_probs=147.3
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~-~L~Sgs~Dg~V~ 622 (743)
......+..|...|.+++|+|++..+++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 3566778899999999999999999998886 99999999998888999999999999999999887 556658999999
Q ss_pred EEECCCCCeeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEecc----CceeeecCCCEEEE
Q 004594 623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKVC----NLMPIILKGCFILN 696 (743)
Q Consensus 623 vWDl~~~~~~l~-~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~-v~~~~~~----~~i~~s~~g~~L~s 696 (743)
+||...+.. +. .+.+|...+ ...|+|++ .++++++.|+.+++||++.... +..+..+ ..+.+.|++..+++
T Consensus 225 ~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 999886554 55 688888875 44899998 4666999999999999997664 4444332 23567788888888
Q ss_pred EecCCeEEEEecccc--------------eEEEeecCCCCEEEEE-eCCCcEEEeCCCc
Q 004594 697 SIFNCYLLLHRIFLN--------------LLSVSEWCNPDEISTS-SWKDSCCSHRELY 740 (743)
Q Consensus 697 gs~Dg~v~vh~~~v~--------------~l~vs~~~~~~~laSg-s~DG~V~iWd~~~ 740 (743)
++.|+.+.+|+.... ...+........++.+ ..|+.+.+|+...
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 999988888754321 1111221111344444 6788888887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-14 Score=163.67 Aligned_cols=121 Identities=22% Similarity=0.467 Sum_probs=112.0
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
.+.++.+.+|...|+|+.|...|.+|++|++|..|+||.+++..++..+.||.+.|++++.+.+..++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
.+.++. ++..+.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 260 rl~~~~-pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 260 RLPDGA-PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred ecCCCc-hHHHHhccccceeeeccCcc-----ccCCCCCceEecccc
Confidence 999865 48999999999999999986 377889999999988
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=132.57 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=137.8
Q ss_pred eCCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCe----EEEEE-----ccCCCCEEEEEEcC-CCCEEEEEe
Q 004594 552 PASTSKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFT----VKSTL-----EEHTQWITDVRFSP-SLSRLATSS 616 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg-----~~LaSgs~Dg~V~IWd~~t~~----~~~~l-----~~H~~~V~~l~fsp-d~~~L~Sgs 616 (743)
-.|..+++.+.|.|+. .+|||++ ..+|+|.+...+ +...+ ..+.++++++.|+. +.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999976 3577665 479999886321 11111 34678899999988 678999999
Q ss_pred CCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-eccC-c-----eee
Q 004594 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KVCN-L-----MPI 687 (743)
Q Consensus 617 ~Dg~V~vWDl~~~~--~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~-~~~~-~-----i~~ 687 (743)
-|-+..|||++++. .....+..|...|..|+|...+..+||++|.||.||+||+|..+.-..+ .... . +++
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 2245678899999999999998999999999999999999976533322 2221 1 222
Q ss_pred e-cCCCEEEEEecCCe-EEE---------------EecccceEEEeecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 688 I-LKGCFILNSIFNCY-LLL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 688 s-~~g~~L~sgs~Dg~-v~v---------------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
. .+-+|+++-..|.. |.+ |...++.++|.+.. ...|.|+|.|..+.+||-.-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEeccc
Confidence 2 24455555544432 222 78888899998876 78999999999999998653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=146.05 Aligned_cols=187 Identities=12% Similarity=0.183 Sum_probs=147.6
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 548 FQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 548 ~~~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
++..-.|...|..+.|+..|.+|+|...| ..|.|+.+.......-|.--.+.|.++.|+|...+|++++ -..|+||
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIY 592 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEE
Confidence 34555788899999999999999998764 5688999887666666666678899999999988888775 6789999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecc----CceeeecCCCEEEEEec
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC----NLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~----~~i~~s~~g~~L~sgs~ 699 (743)
|+.... .+..+......|.+++.||.|.+++ .++.|+.+..||+.-. +..+.++.| +.+++++.-.++++|+.
T Consensus 593 dL~kqe-lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 593 DLSKQE-LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred ehhHHH-HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 998743 3555555567899999999999877 7888999999999854 455555554 55889999999999999
Q ss_pred CCeEEEEe-----------------------c--ccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 700 NCYLLLHR-----------------------I--FLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 700 Dg~v~vh~-----------------------~--~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
|+++.|.. . .+.++.+.+.+..-+|++++.||+|++|-
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 99988821 1 13356666666677999999999999983
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=147.61 Aligned_cols=130 Identities=21% Similarity=0.344 Sum_probs=111.6
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--------CCeEEEEEccCCCCEEEEEEcCCCCEEEEEe
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~--------t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs 616 (743)
+....++..|.+.|+.+.|+|....|++|+.|+++++|++. ..+++.+|.+|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 45555889999999999999999999999999999999992 2467889999999999999999999999999
Q ss_pred CCCeEEEEECC---------CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 004594 617 ADRTVRVWDTE---------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 617 ~Dg~V~vWDl~---------~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
.||+|++|++- .......++.||++.|+.+++++... .|++|+.||+||.|+......
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc
Confidence 99999999543 12233567889999999999999865 466999999999999876554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=143.48 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=115.8
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccc-----------cccccCCCceeee
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVG-----------RSAEVGKGFTFTE 547 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~-----------~~~~~~~~~~~~~ 547 (743)
...++++.|-|-.. ..+...-+++++.+++............ ..+.... .-.+
T Consensus 219 ktsvT~ikWvpg~~--------------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~--~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSD--------------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKK--TRNP 282 (636)
T ss_pred ccceEEEEEEeCCC--------------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccc--cCCc
Confidence 35788888887554 4555666788888885432211111100 1111111 1133
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 548 ~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
+..+.--.+.|..++|+|||++||+.+.||.+||||..+.+.+..++..-+...||+|+|||++|+||+.|..|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 44444445689999999999999999999999999999988887777777889999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCCeEEEEEec
Q 004594 628 NPDYSLRTFTGHSTTVMSLDFHP 650 (743)
Q Consensus 628 ~~~~~l~~l~gh~~~V~sl~fsp 650 (743)
..+. +..-.+|.++|..|+|+|
T Consensus 363 erRV-VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRV-VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceE-EEeccccccceeeEeecc
Confidence 8654 777889999999999997
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=123.28 Aligned_cols=222 Identities=15% Similarity=0.174 Sum_probs=143.2
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
++++|.+|+ ||.|+-|...+.... ....++|+........ ...--.|+++...|..+-|++++.|+.+.-||+
T Consensus 71 ~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 71 HDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred ehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 357788776 499999977655321 2333444433322111 111234889999997777777778999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---------C-CCCeEEEEEecCCCe
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKED 654 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g---------h-~~~V~sl~fspdg~~ 654 (743)
++++..+++++|++.|.|+.-......|+||+.||+|||||.++.+. +..+.. | ...|.+++-+.+ +
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--W 220 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--W 220 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--e
Confidence 99999999999999999999866667899999999999999998664 655542 2 234677776544 4
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeccCcee-eecCCCEEEEEecCCeEEEEecccc-----------eEEEeecCC-C
Q 004594 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRIFLN-----------LLSVSEWCN-P 721 (743)
Q Consensus 655 llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~L~sgs~Dg~v~vh~~~v~-----------~l~vs~~~~-~ 721 (743)
++ |+....+.+|.++..+++.+|.....+. +.-+...+++++..+.|.-|..... ++..+.... -
T Consensus 221 lv--CGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 221 LV--CGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred EE--ecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence 44 4446789999999998887776543222 2233444555554433333322211 111111111 2
Q ss_pred CEEEEEeCCCcEEEeCC
Q 004594 722 DEISTSSWKDSCCSHRE 738 (743)
Q Consensus 722 ~~laSgs~DG~V~iWd~ 738 (743)
..|..++...++.|+.+
T Consensus 299 k~~s~ag~s~~~~i~~~ 315 (325)
T KOG0649|consen 299 KFISIAGFSNKLHILKD 315 (325)
T ss_pred EEEEecccceeeeeeec
Confidence 35555667777777654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=139.95 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=147.2
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..++.++.||.+.+..- ..+..+.+..|.+.|.|-.|+|||.-|+|+++||.|++|. ++
T Consensus 76 d~~~i~s~DGkf~il~k--------------------~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rs 134 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK--------------------SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RS 134 (737)
T ss_pred ceEEEEcCCceEEEecc--------------------cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-cc
Confidence 45566677888887711 1123355678999999999999999999999999999998 45
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
|-...++......|+|++|.|+...++-|- .+.+.+=-+..... +-..+.|.+-|.+++|++... ++++|++|...+
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 555556666778899999999866554432 44555555554343 556788999999999999854 888999999999
Q ss_pred EEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEecc-cceEEEeecCCCCEEEEEeCCCcEEE
Q 004594 667 YWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIF-LNLLSVSEWCNPDEISTSSWKDSCCS 735 (743)
Q Consensus 667 vWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~-v~~l~vs~~~~~~~laSgs~DG~V~i 735 (743)
|||.- |..+.....| ++++|.|+ ..++.|+.+ ++++.... ...+.+++..++..+++|...|.|.+
T Consensus 212 vWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 212 IWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 99965 4544444333 56889999 666666655 56664433 34555666666888999988888754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=133.09 Aligned_cols=211 Identities=16% Similarity=0.199 Sum_probs=152.4
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW 582 (743)
++.++.+++++.|+.+++|.. ....+..+ -.+++.|+.|+|.| .||.|...|...|.
T Consensus 377 hps~~q~~T~gqdk~v~lW~~-----------------~k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWND-----------------HKLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred CCChhheeeccCcceEEEccC-----------------CceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 445678899999999999941 11111111 23568999999999 99999999999999
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCeEEEEEeC
Q 004594 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 583 d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l-~gh~~~V~sl~fspdg~~llaSgs~ 661 (743)
|+++...+. ++.....+++++|+|+|.+||.|+.|+.|+||.+.......... +.|.++|+.++|++|+. +|.+-+.
T Consensus 434 d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ-FLVSNSG 511 (626)
T ss_pred ecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-eEEeccC
Confidence 999855544 33348899999999999999999999999999987655433332 33448899999999976 6669999
Q ss_pred CCcEEEEECCCCeE---EEEEe-------------c------cCceeeecCCCEEEEEecCCeEEEEecc----------
Q 004594 662 NSEIRYWSINNGSC---AGVFK-------------V------CNLMPIILKGCFILNSIFNCYLLLHRIF---------- 709 (743)
Q Consensus 662 Dg~IrvWDl~tg~~---v~~~~-------------~------~~~i~~s~~g~~L~sgs~Dg~v~vh~~~---------- 709 (743)
|-.|-+|....-+. ++.++ + ...++.+.+++.+++|.+.|+|++...+
T Consensus 512 d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he 591 (626)
T KOG2106|consen 512 DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE 591 (626)
T ss_pred ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee
Confidence 99999994332111 11111 0 0124455778889999999999993322
Q ss_pred -----cceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 710 -----LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 710 -----v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..+.++.+.++...+.+.+.|..|..|+-
T Consensus 592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 12345555565677877779999999973
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-12 Score=134.04 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=152.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t--~~~~~~l~~H~~~V~~l~fspd~~-~L~Sgs~Dg~V~vWDl~~~~ 630 (743)
..+.|+||.|+|...++++|+.|++++||-++. ...+..+.--..+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 346799999999999999999999999998864 334555655678999999999998 89999999999999998755
Q ss_pred e-eEEEEecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecCCeEEE
Q 004594 631 Y-SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 631 ~-~l~~l~gh~-~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
. .+....++. ..+.....++++. +|+..+..|.|.+....+++.+..++.. ..++|+.+++.|+..+.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 3 123333444 3567788899987 6668888999999999999999888754 55789999999999999999999
Q ss_pred Eecc-------------cceEEEeecCCCCEEEEEeCCCcEEEeCCCccc
Q 004594 706 HRIF-------------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 706 h~~~-------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~l~ 742 (743)
|+.. +....++...++.+||+||..|.|-|||-+.++
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 7643 334455555568899999999999999976655
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-13 Score=153.55 Aligned_cols=178 Identities=24% Similarity=0.317 Sum_probs=145.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..+++.+|+.|..|++|...+ ......++||.+.|+.++.+....++++++.|+.|++|.+
T Consensus 201 tg~~Iitgsdd~lvKiwS~et-------------------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMET-------------------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred ccceEeecCccceeeeeeccc-------------------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 448999999999999995333 3456778999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC-------------------------------e-
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-------------------------------Y- 631 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~-~~~-------------------------------~- 631 (743)
.++.++..+.+|++.|++++|+|-. +.+.||++++||.+ ... .
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999953 77889999999986 000 0
Q ss_pred ----------------------------------------e---------EEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 632 ----------------------------------------S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 632 ----------------------------------------~---------l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
| ++.+.+|...+..+++||-...+..+++.|
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD 417 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCC
Confidence 0 122336778899999999888888899999
Q ss_pred CcEEEEECCCCeEEEEEecc-C---ceeeecCCCEEEEEecCCeEEE
Q 004594 663 SEIRYWSINNGSCAGVFKVC-N---LMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~~-~---~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
|.+.|||+-.|..++.+... . ...|+++|..++....-|.+.|
T Consensus 418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence 99999999999887766532 1 1347788887777766666665
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=135.48 Aligned_cols=149 Identities=21% Similarity=0.324 Sum_probs=123.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 555 ~~~V~~i~fspdg~-~LaSgs~Dg~V~IWd~~t~---------~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
..+|+.+.|.+... +||||+.|..|+||-+... +....+..|...|++|+|+|+|.+|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35699999998555 9999999999999987542 2345677899999999999999999999999999999
Q ss_pred ECC--------C-----C--CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC----ce
Q 004594 625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LM 685 (743)
Q Consensus 625 Dl~--------~-----~--~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i 685 (743)
-.. + . ....+.+.+|...|..++|+|++. ++++++.|..+++||+..|..+..+..|. .+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1 122456778999999999999976 66799999999999999999988888764 37
Q ss_pred eeecCCCEEEEEecCCeEE
Q 004594 686 PIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 686 ~~s~~g~~L~sgs~Dg~v~ 704 (743)
+|.|-.+|+++-+.|...+
T Consensus 172 awDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred ecchhhhhhhhhccCcccc
Confidence 7889999998888887433
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=140.74 Aligned_cols=210 Identities=16% Similarity=0.180 Sum_probs=151.8
Q ss_pred ccccCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+.+.....+.++.|+|... .+++.|+.+|.|.+|+.....+.. ....-....
T Consensus 236 e~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~-------------~s~ls~~~~ 288 (555)
T KOG1587|consen 236 ELVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP-------------PSGLSALEV 288 (555)
T ss_pred eEEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC-------------Ccccccccc
Confidence 34444556677777777554 789999999999999776653211 011112234
Q ss_pred CCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCe------------------------------------------
Q 004594 553 ASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT------------------------------------------ 588 (743)
Q Consensus 553 ~H~~~V~~i~fspdg--~~LaSgs~Dg~V~IWd~~t~~------------------------------------------ 588 (743)
.|..+|+.+.|..+. .-|++++.||.|+.|+++...
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 688899999996533 458888999999999775210
Q ss_pred ---E------------------EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004594 589 ---V------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 589 ---~------------------~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~ 647 (743)
. ...+..|.+.|+++.++|-+..++..+.|.+|+||.......++..+..+...|++++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE
Confidence 0 0011236788999999997666555555999999998744556777888888899999
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCe--EEEEEec----cCceeeecCCCEEEEEecCCeEEEEecc
Q 004594 648 FHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 648 fspdg~~llaSgs~Dg~IrvWDl~tg~--~v~~~~~----~~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
|+|..+-+|+++..||.|.|||+.... ++...+. .+.+.+++.|+.|++|...|++.+++..
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999999999999999999999997543 3333322 2345677889999999999998887664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=142.35 Aligned_cols=226 Identities=11% Similarity=0.077 Sum_probs=156.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
..++.+++.||.|++|........+.+.+..|....+. +.+..+.=.-+.|.....+|+++|+-..|+|||++
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~-------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ-------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeecccccc-------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 47889999999999996544432333333333332221 11111111346777655556666668899999998
Q ss_pred CCeEEEEEc-cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCC--eEEEEEecCCCeEEEEE
Q 004594 586 SFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTT--VMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 586 t~~~~~~l~-~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~--~~l~~l~gh~~~--V~sl~fspdg~~llaSg 659 (743)
...++..+. +-...|+++.-+- .|+.|+.|..||.||+||.+... ..+..++.|... |..+.+.+.|-.-|++|
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 876666553 3344566664433 47899999999999999988643 357788889888 99999999776667899
Q ss_pred eCCCcEEEEECCCCeEEEEE---e----c--cCceeeecCCCEEEEEecCCeEEEEecccce------------------
Q 004594 660 DNNSEIRYWSINNGSCAGVF---K----V--CNLMPIILKGCFILNSIFNCYLLLHRIFLNL------------------ 712 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~~v~~~---~----~--~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~------------------ 712 (743)
+.||.|++||+|.......+ . + ++.+.++.....|++|+. +.|+||+.....
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 99999999999974221111 1 2 567889999999999998 899998755422
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 713 LSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 713 l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
.++.+.+..-.+++|+.|.+|.||.+.
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecC
Confidence 223333335578999999999999653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-12 Score=129.03 Aligned_cols=159 Identities=21% Similarity=0.335 Sum_probs=129.5
Q ss_pred EeeCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCeEEEEE-----ccCCCCEEEEEEcCC----CCEEEEE
Q 004594 550 LIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSPS----LSRLATS 615 (743)
Q Consensus 550 ~l~~H~~~V~~i~fsp-----dg~~LaSgs~Dg~V~IWd~~t~~~~~~l-----~~H~~~V~~l~fspd----~~~L~Sg 615 (743)
..+.|+.+|..++|++ +...+||++ ...|.||.+...--++.+ ..|....+.++|+-+ ..++|.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 234566666 557889987643322222 236777888888764 3478888
Q ss_pred eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---C----ceeee
Q 004594 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---N----LMPII 688 (743)
Q Consensus 616 s~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~----~i~~s 688 (743)
+.-|.|||.|+.++. +...+.+|...|+.|.|+|+.+.++++||.|..||+|++++..|+..|.+. . ++.|+
T Consensus 112 G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 999999999999865 488899999999999999999999999999999999999999999999763 2 36788
Q ss_pred cCCCEEEEEecCCeEEEEeccc
Q 004594 689 LKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 689 ~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
.+|.+|++++.|..+++|+..+
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CCCCeeeccCCcceEEEEecCh
Confidence 9999999999999999998773
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=136.99 Aligned_cols=183 Identities=18% Similarity=0.115 Sum_probs=128.0
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeE--EEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~--~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~ 622 (743)
..+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+||++.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 4456778889999999999999888754 3699999988754 3333333 45789999999887664 688766
Q ss_pred EE--ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecc-CceeeecCCCEEEEEe
Q 004594 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVC-NLMPIILKGCFILNSI 698 (743)
Q Consensus 623 vW--Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~-~~i~~s~~g~~L~sgs 698 (743)
|| |+.++. +..+..+...+.++.|+|+|..+++++..++.++||++... .....+... ....++|+|++|+..+
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN 351 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Confidence 65 555433 45666777778899999999988877777888999987532 222222211 2356899999998888
Q ss_pred cCCeEEEEecccc----------eEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 699 FNCYLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 699 ~Dg~v~vh~~~v~----------~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.++.+. ++.... .....+.+++..|+.++.++.+.+|.
T Consensus 352 ~~~i~~-~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 352 GDNVVK-QDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCCEEE-EECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 776555 332111 11123445577899999999888774
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=138.49 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=130.8
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEe-eCC
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAS 554 (743)
Q Consensus 476 ~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~H 554 (743)
..+..-+.++.|+.+| .+|++||.|-.+.+|+ .+..+.++.+ .+|
T Consensus 47 ~GH~GCVN~LeWn~dG---------------~lL~SGSDD~r~ivWd-------------------~~~~KllhsI~TgH 92 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG---------------ELLASGSDDTRLIVWD-------------------PFEYKLLHSISTGH 92 (758)
T ss_pred ccccceecceeecCCC---------------CEEeecCCcceEEeec-------------------chhcceeeeeeccc
Confidence 3455677888899888 6999999999999993 3344555544 589
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeE
Q 004594 555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTV 621 (743)
Q Consensus 555 ~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd~~t----------~~~~~~l~~H~~~V~~l~fspd~-~~L~Sgs~Dg~V 621 (743)
+..|.|+.|-| ..++|++|..|+.|+|||+.. .+..+.+..|+..|..|+-.|++ ..|.+++.||+|
T Consensus 93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 99999999999 567899999999999999984 23445567899999999999987 788999999999
Q ss_pred EEEECCCCCeeEEEEe---------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 622 RVWDTENPDYSLRTFT---------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~---------gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
+-+|++.+..|-.... ...-...+++.+|..+++|+.|+.|-.+|+||.+
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 9999998665433221 1223467899999999999999999999999965
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=125.99 Aligned_cols=199 Identities=17% Similarity=0.186 Sum_probs=153.2
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
..++.+..|+.|.. .++.+.....|.+|.... ...++..+++..|...|
T Consensus 10 ~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIV 58 (361)
T ss_pred cCceeeeeecCCCc---------------eEEeccCCceEEEEEecC----------------CCCceeceehhhhCcce
Confidence 34678888888774 567777777788883321 22367889999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC-C--CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTE-S--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S 632 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~-t--~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~---~ 632 (743)
++|+|+|..+.|++|+.|....||... . .++...+..|...++||.|+|.++.|++|+....|.||-++.... +
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS 138 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence 999999999999999999999999983 3 345556677899999999999999999999999999998765321 1
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-----C-------------CeEEEEEe----ccCceeeecC
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----N-------------GSCAGVFK----VCNLMPIILK 690 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~-----t-------------g~~v~~~~----~~~~i~~s~~ 690 (743)
.+.-+.+.+.|.+++|||++ -+|++|+.|+.+||+..- . |..+..+. ....+.|++.
T Consensus 139 KhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 22334577889999999995 488899999999999642 1 11222221 1245789999
Q ss_pred CCEEEEEecCCeEEEEecc
Q 004594 691 GCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 691 g~~L~sgs~Dg~v~vh~~~ 709 (743)
|+.|+-.+.|.++.+-+..
T Consensus 218 G~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCEeeEecCCCceEEeecC
Confidence 9999999999999985543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=135.51 Aligned_cols=174 Identities=24% Similarity=0.253 Sum_probs=128.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
.+++|+.+|..|++|+.||++|||+..+...+..+..|...|.++.|+||++.|++-+.| ..+|||++++.. +.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 679999999999999999999999988888888888999999999999999999999999 999999998743 443331
Q ss_pred --CCCCeEEEEEecCC--Ce--EEEEEeCCCcEEEEECCCC---------eEEEEEeccCceeeecCCCEEEEEecCCeE
Q 004594 639 --HSTTVMSLDFHPSK--ED--LLCSCDNNSEIRYWSINNG---------SCAGVFKVCNLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 639 --h~~~V~sl~fspdg--~~--llaSgs~Dg~IrvWDl~tg---------~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v 703 (743)
-.-....+.|.-+. +. +++.-..-+.|+.||+... +.+..++..+++.++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 12234556676654 22 2333344466777766432 233444456778899999999999999998
Q ss_pred EE---------------EecccceEEEeecCCCCEEEEEeCCCcEEEe
Q 004594 704 LL---------------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 704 ~v---------------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iW 736 (743)
.+ |...++.+.++++ ..++++.+.|..+.+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd--sr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPD--SRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCC--cCcccccccCCceeEE
Confidence 88 4455555555554 6667766666665544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-10 Score=122.55 Aligned_cols=179 Identities=10% Similarity=0.128 Sum_probs=122.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-C---eEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCC
Q 004594 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTES-F---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD 630 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t-~---~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vWDl~~~~ 630 (743)
....++|+|++++|++++. ++.|.+|++++ + +.+..+. +...+.+++|+|+++++++++ .++.|++||+.+..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 4568999999999888875 88999999964 2 2333332 334467889999998886555 57999999998633
Q ss_pred eeE------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--C--eEEEEEecc----------CceeeecC
Q 004594 631 YSL------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G--SCAGVFKVC----------NLMPIILK 690 (743)
Q Consensus 631 ~~l------~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t--g--~~v~~~~~~----------~~i~~s~~ 690 (743)
... .... .......+.|+|++++++++...+++|.+||+.. + +.+..+... ..+.++|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 211 0111 1244678999999998877777789999999973 3 333333321 12678899
Q ss_pred CCEEEEEe-cCCeEEEEeccc--------c-------eEEEeecCCCCEEEEEeC-CCcEEEeC
Q 004594 691 GCFILNSI-FNCYLLLHRIFL--------N-------LLSVSEWCNPDEISTSSW-KDSCCSHR 737 (743)
Q Consensus 691 g~~L~sgs-~Dg~v~vh~~~v--------~-------~l~vs~~~~~~~laSgs~-DG~V~iWd 737 (743)
|++++++. .++.|.+++..- . ...+...+++.+|+++.. +++|.+|+
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99999885 467888865311 0 112334445778877665 89999995
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=131.68 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=142.0
Q ss_pred eEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEE
Q 004594 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH 562 (743)
Q Consensus 483 s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~ 562 (743)
.++.|+.++ ..+++|+.|+++++|.++.. ..+..+..|...|.+++
T Consensus 148 k~vaf~~~g---------------s~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~ 193 (398)
T KOG0771|consen 148 KVVAFNGDG---------------SKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLD 193 (398)
T ss_pred eEEEEcCCC---------------CEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccce
Confidence 667777766 58999999999999965443 23344557888899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc--cCCCCEEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCCe----
Q 004594 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSL---S--RLATSSADRTVRVWDTENPDY---- 631 (743)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~--~H~~~V~~l~fspd~---~--~L~Sgs~Dg~V~vWDl~~~~~---- 631 (743)
|+|||++|++-+.| ..+||++.++.++.... +-......++|.-+. . +++.-..-+.|+.||+..-..
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 99999999999999 89999999987665554 223446678888765 2 334444567788877653222
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-c----CceeeecCCCEEEEEecCCeEEEE
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C----NLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-~----~~i~~s~~g~~L~sgs~Dg~v~vh 706 (743)
..+....-...|++++.+++|+ +++.|+.||.|-|++..+-+++..++. | +.+.|+|+.+++++-+.|....+-
T Consensus 273 ~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 273 RLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred chhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 1222222234699999999987 788999999999999999888877764 2 558899999999998888776664
Q ss_pred ecc
Q 004594 707 RIF 709 (743)
Q Consensus 707 ~~~ 709 (743)
...
T Consensus 352 ~l~ 354 (398)
T KOG0771|consen 352 KLA 354 (398)
T ss_pred EEe
Confidence 433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=125.33 Aligned_cols=151 Identities=15% Similarity=0.256 Sum_probs=124.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg-~~LaSgs~Dg~V~IWd~ 584 (743)
.+++.+.|.|-+..+|+...+ ........+-.|...|++|+|...+ ..||+.+.||.||+||+
T Consensus 163 p~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 378899999999999966544 1223345677899999999999855 48999999999999999
Q ss_pred CCCeEEEEEccC---CCCEEEEEEcC-CCCEEEEEeCC-CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 004594 585 ESFTVKSTLEEH---TQWITDVRFSP-SLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 585 ~t~~~~~~l~~H---~~~V~~l~fsp-d~~~L~Sgs~D-g~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSg 659 (743)
+..+.-..+.+. ..+...++|++ |-++++|-..| ..|.+.|+|.+..++..+.+|.+.|+.|+|.|.....+|+|
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 987765554332 45688899988 46677776654 57999999999989999999999999999999999999999
Q ss_pred eCCCcEEEEECCC
Q 004594 660 DNNSEIRYWSINN 672 (743)
Q Consensus 660 s~Dg~IrvWDl~t 672 (743)
+.|..+-|||+..
T Consensus 307 GDD~qaliWDl~q 319 (364)
T KOG0290|consen 307 GDDCQALIWDLQQ 319 (364)
T ss_pred CCcceEEEEeccc
Confidence 9999999999975
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=115.69 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 004594 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENP 629 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSg--s~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vWDl~~~ 629 (743)
.++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+ +...+..|.|+|+|++|++++. .|.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4569999999999987554 457899999997 5666666 3567889999999999999875 467999999964
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEEEEEe
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IrvWDl~tg~~v~~~~ 680 (743)
.. +..+. |. .++.++|+|+|++++++.+. |..++||+.. |+.+....
T Consensus 136 ~~-i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 136 KK-ISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EE-eeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 43 55544 43 47899999999977766553 8889999985 66655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=122.82 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=124.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEee-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
++||++|+.|..+++|.....- ...+.+++.... .|...|.|++|...+++|++|+.+++|.+.|+
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~-------------~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELM-------------VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred CeEEeecCCcceeeeechHHHH-------------hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 4899999999999999543221 112224455443 45688999999999999999999999999999
Q ss_pred CCCeEEEEEcc--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 585 ~t~~~~~~l~~--H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~--l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
++.+.+.++.. ..+.|+.+..+|..+.|++.+.++.|.+||++....+ +..+....+...++.|+|..+.||++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 99888877643 2358999999999999999999999999999875422 2233344566889999999999999999
Q ss_pred CCCcEEEEECCCC
Q 004594 661 NNSEIRYWSINNG 673 (743)
Q Consensus 661 ~Dg~IrvWDl~tg 673 (743)
..+.+-+||++..
T Consensus 215 ~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQ 227 (609)
T ss_pred ccCCCCceeeccc
Confidence 9999999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-10 Score=121.61 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=141.2
Q ss_pred EEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-
Q 004594 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES- 586 (743)
Q Consensus 509 l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs-~Dg~V~IWd~~t- 586 (743)
.++...|+.|.+|+.... .+.+.+..+.. .+....++++|++++|++++ .++.|.+|+++.
T Consensus 5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE----------------GALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCC----------------CceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 344567899999966321 12233444432 34577899999999887765 478899999863
Q ss_pred CeE--EEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 587 ~~~--~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~---~l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
+.. +.... ..+....++|+|++++|++++. ++.|.+||+.+... .+..+. +...+.+++|+|+++.+++++.
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence 332 22222 3345678999999998888765 89999999974321 233333 3345678899999998888888
Q ss_pred CCCcEEEEECCCCeEEE-----EEe-----ccCceeeecCCCEEEEEec-CCeEEEEeccc-----ce---E--------
Q 004594 661 NNSEIRYWSINNGSCAG-----VFK-----VCNLMPIILKGCFILNSIF-NCYLLLHRIFL-----NL---L-------- 713 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~-----~~~-----~~~~i~~s~~g~~L~sgs~-Dg~v~vh~~~v-----~~---l-------- 713 (743)
.++.|++||+.+...+. .+. +...+.|+|+|+++++... ++.|.+|+... .. +
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 88999999998632221 111 1245889999999988876 88998877531 00 0
Q ss_pred ------EEeecCCCCEEEEEe-CCCcEEEeC
Q 004594 714 ------SVSEWCNPDEISTSS-WKDSCCSHR 737 (743)
Q Consensus 714 ------~vs~~~~~~~laSgs-~DG~V~iWd 737 (743)
.+...+++.+++++. .+++|.+|+
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 122334567777775 478898885
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=114.61 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=119.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc---CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCC
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENP 629 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~---H~~~V~~l~fspd~~~L~Sgs--~Dg~V~vWDl~~~ 629 (743)
...|.+|.++ .++|+++-.+. |.|||+++.+.+.++.. +...+.++.+++.+.+++--+ ..|.|.|||+.+-
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 3458888885 34666666554 99999999999888754 445566666666667776543 3789999999985
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCeEEEEEeccC------ceeeecCCCEEEEEecCCe
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCN------LMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~-IrvWDl~tg~~v~~~~~~~------~i~~s~~g~~L~sgs~Dg~ 702 (743)
. ++..+..|++.+-+|+|+++|. +||++|+.|+ |||+++.+|..+..|+... .++|++++.+|.+.+..++
T Consensus 164 ~-~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 164 Q-PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred e-eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 5 4889999999999999999986 8889998887 8999999999999998653 3789999999999999999
Q ss_pred EEE
Q 004594 703 LLL 705 (743)
Q Consensus 703 v~v 705 (743)
|++
T Consensus 242 VHi 244 (391)
T KOG2110|consen 242 VHI 244 (391)
T ss_pred EEE
Confidence 998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-10 Score=113.90 Aligned_cols=150 Identities=16% Similarity=0.248 Sum_probs=103.5
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEEcc-CCCCEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 004594 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVW 624 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~---D-------g~V~IWd~~t-~~~~~~l~~-H~~~V~~l~fspd~~~L~Sg--s~Dg~V~vW 624 (743)
..+.|+++|.+|+.-.. | +...||.++. ...+..+.- ..+.|.+++|+|+++.|++. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999987665433 2 2345555532 233333432 34579999999999987544 457899999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEecc--CceeeecCCCEEEEEec-
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF- 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs--~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~L~sgs~- 699 (743)
|++. . .+..+. ...++.|.|+|+|..++++|. ..|.|.+||+++.+++..+... +.+.|+|+|++++++..
T Consensus 89 d~~~-~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVKG-K-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCcc-c-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEec
Confidence 9972 3 355553 567889999999986665442 2467999999999888777643 45789999999999875
Q ss_pred -----CCeEEEEecccce
Q 004594 700 -----NCYLLLHRIFLNL 712 (743)
Q Consensus 700 -----Dg~v~vh~~~v~~ 712 (743)
|..++||+.....
T Consensus 165 ~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred cceeccccEEEEEecCeE
Confidence 4555666554443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-10 Score=127.79 Aligned_cols=217 Identities=15% Similarity=0.181 Sum_probs=154.6
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
+.++++++|..||.|.+|.-... .........++-|...|.+++|+++|.+|++|+..|.+.+|.
T Consensus 215 pn~~~~Aa~d~dGrI~vw~d~~~---------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 215 PNERYLAAGDSDGRILVWRDFGS---------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred cccceEEEeccCCcEEEEecccc---------------ccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 34489999999999999943221 011123466788999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEe--------cCCCCeEEEEEecCCC
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT--------GHSTTVMSLDFHPSKE 653 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~--~l~~l~--------gh~~~V~sl~fspdg~ 653 (743)
+.+++ ..-+..-.+.|..+.++||+.+.+....|..|.+....+... .+..+. +..+-.+.++++|. .
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~ 357 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-T 357 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-C
Confidence 99987 445556678999999999999999999999999998754221 111111 12455778899994 3
Q ss_pred eEEEEEeCCCcEEEEECCCCeEEEEEecc---------------CceeeecCCCEEEEEe--------cCCeEEE--E--
Q 004594 654 DLLCSCDNNSEIRYWSINNGSCAGVFKVC---------------NLMPIILKGCFILNSI--------FNCYLLL--H-- 706 (743)
Q Consensus 654 ~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---------------~~i~~s~~g~~L~sgs--------~Dg~v~v--h-- 706 (743)
..++-++..|.|.+||+-+.+.+..+... +.+..+..|.|+++.- .||.+.+ |
T Consensus 358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 35667888999999999887766555421 2234456688888763 3444433 3
Q ss_pred -----------------ecccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 707 -----------------RIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 707 -----------------~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
.....+.++........++++|.||.+++|-
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~ 485 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWV 485 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEE
Confidence 2233334444333344899999999999993
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=133.62 Aligned_cols=174 Identities=18% Similarity=0.317 Sum_probs=132.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
.|+.++|-|||..|+.+. +..+.|||+..|..+.++++|.+.|+||+|+.+|+++++|+.|+.|.+|...-.. +-.+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 699999999999887776 4579999999999999999999999999999999999999999999999866422 2333
Q ss_pred ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE--EEeccCceeeecCCCEEEEEecCCeEEEEec------
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKVCNLMPIILKGCFILNSIFNCYLLLHRI------ 708 (743)
Q Consensus 637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~--~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~------ 708 (743)
.|.+.|.|+.|+|-.. .|+||+.. ..-+|........+ ......+.+|..||.|++.|..||+|.+-..
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 4999999999999854 67788854 57889876543221 1112344678899999999999999999322
Q ss_pred ----------ccceEEEeecCC---CCEEEEEeCCCcEEEe
Q 004594 709 ----------FLNLLSVSEWCN---PDEISTSSWKDSCCSH 736 (743)
Q Consensus 709 ----------~v~~l~vs~~~~---~~~laSgs~DG~V~iW 736 (743)
.+-.+++++... ...++...|..++..+
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 122333433322 2467788888777665
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=120.79 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=127.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCC-CCe
Q 004594 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp--d~~~L~Sgs~Dg~V~vWDl~~~~~-~l~~l~gh~-~~V 643 (743)
..+|++...|.|++||..+++.+..|++|...+..++|.. ....+.+|+.||+||+||+|.... .+..+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788888999999999999999999999999999999977 467899999999999999997553 344555665 345
Q ss_pred EEEEEecCCCeEEEEEe----CCCcEEEEECCCCeE-EEEEec-----cCceeeec-CCCEEEEEecCCeEEEEecc---
Q 004594 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFKV-----CNLMPIIL-KGCFILNSIFNCYLLLHRIF--- 709 (743)
Q Consensus 644 ~sl~fspdg~~llaSgs----~Dg~IrvWDl~tg~~-v~~~~~-----~~~i~~s~-~g~~L~sgs~Dg~v~vh~~~--- 709 (743)
.+++.... ..++++|. .|..|.+||+|..+. ++.+.. .+.+.|+| +.+.|++|+-||.|.+.+..
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 56665544 34776664 467899999998765 555532 25578887 56789999999999995432
Q ss_pred --------------cceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 710 --------------LNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 710 --------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+..+.|.... =..|.+.++.++..+|+.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~-ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKK-YKRIMCLTHMETFAIYELE 242 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCC-cceEEEEEccCceeEEEcc
Confidence 2333333221 1379999999999999754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=128.99 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=120.8
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW 582 (743)
.++..++++||.||+|++|+...-.. ++...+...++..-.+.|.++.+.+.+..+|+|+.||.|++.
T Consensus 1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~------------~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEG------------EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred CCCCceEEEecCCceEEEeeehhhhc------------CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 45568999999999999997654321 112223333444355679999999999999999999999999
Q ss_pred ECCCCe-------EEE-----------EE-------------------------------------ccCCCCEEEEEEcC
Q 004594 583 CTESFT-------VKS-----------TL-------------------------------------EEHTQWITDVRFSP 607 (743)
Q Consensus 583 d~~t~~-------~~~-----------~l-------------------------------------~~H~~~V~~l~fsp 607 (743)
+++..+ ..+ .+ ....+.|++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 876310 000 00 01246799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC---eEEEEEe-CCCcEEEEECCCCeEEEEEecc
Q 004594 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE---DLLCSCD-NNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 608 d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~---~llaSgs-~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
.+.++++|...|.+-+||+|-+......-.++...|+.|+.+|..+ ..+.+++ ..+.|.+|++.+|.+-.++...
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 9999999999999999999975543333345668899998887644 3343444 5788999999999887777654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=128.82 Aligned_cols=220 Identities=13% Similarity=0.138 Sum_probs=145.1
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcE
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 579 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp--dg~~LaSgs~Dg~V 579 (743)
++...+.+++......|++|+...+.. +..+..-......|+.+.+-. |..++++|+.||.|
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~----------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRL----------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCce----------------eccccCCCCCCCccceeeeecccchhheeeeccCceE
Confidence 455667777777677888887655521 111111112345588888865 66799999999999
Q ss_pred EEEEC-CC----CeEEEEEcc---C----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004594 580 VLWCT-ES----FTVKSTLEE---H----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 580 ~IWd~-~t----~~~~~~l~~---H----~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~ 647 (743)
|||+- .+ .+.+..+.+ + .+.=.-+.|.-...+|++++.-..|||||+.....+.....+....|+++.
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 99963 22 233333221 1 111134567766556666666899999999986654444455667788887
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCC---eEEEEEeccCc------eeeecCCC-EEEEEecCCeEEEEecccc------
Q 004594 648 FHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKVCNL------MPIILKGC-FILNSIFNCYLLLHRIFLN------ 711 (743)
Q Consensus 648 fspdg~~llaSgs~Dg~IrvWDl~tg---~~v~~~~~~~~------i~~s~~g~-~L~sgs~Dg~v~vh~~~v~------ 711 (743)
-+-...+++++|-.||.||+||.|.. ..+..++.|+. +.+-+.|- .|++|+.||.|.+|+....
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 66655678999999999999999864 34566666643 23445454 4999999999999876551
Q ss_pred -----------eEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 712 -----------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 712 -----------~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..++........++||+. +.|+||+.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 112222233557888888 99999974
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=120.34 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=119.6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
-+++.|-.++.|.+|+...+. +.... ....+.+..+..|..+|.++.|.+....=++|+.+.++..|++..
T Consensus 166 ~lllaGyEsghvv~wd~S~~~----~~~~~-----~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGD----KIIQL-----PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred EEEEEeccCCeEEEEEccCCc----eeecc-----ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 456778889999999876651 11111 122344556678999999999998767778899999999998864
Q ss_pred C--e--EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 587 F--T--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 587 ~--~--~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
. . ....++-....|..+++.||++.++|+++|+.||||..++.. ++..++-|...|++++|+|+. .++|+++.|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~-~lmAaaskD 314 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDC-ELMAAASKD 314 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCC-chhhhccCC
Confidence 2 1 111222223458899999999999999999999999999866 488999999999999999995 489999999
Q ss_pred CcEEEEEC
Q 004594 663 SEIRYWSI 670 (743)
Q Consensus 663 g~IrvWDl 670 (743)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=113.45 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=133.6
Q ss_pred CCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCC-CCCCccccccccCCCceeeeEEEeeCCCC
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 478 ~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.-+.++++.|.|... .-++.|+. .-|++|...... ..+.. +-. +.-...+....+| .
T Consensus 139 sQrnvtclawRPlsa--------------selavgCr-~gIciW~~s~tln~~r~~--~~~----s~~~~qvl~~pgh-~ 196 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSA--------------SELAVGCR-AGICIWSDSRTLNANRNI--RMM----STHHLQVLQDPGH-N 196 (445)
T ss_pred hhcceeEEEeccCCc--------------ceeeeeec-ceeEEEEcCccccccccc--ccc----cccchhheeCCCC-c
Confidence 345778888888664 34455554 568899433221 11110 000 0011123334566 6
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
+|+++.|.+||..+++++. |..|+|||++++..+.....-.+.++-+.|+||+.+|+.+..|+..++|.......+.+.
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence 7999999999999999986 567999999998776655445677999999999999999999999999976554443444
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eE--------------EEEEe------c-------cCceee
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC--------------AGVFK------V-------CNLMPI 687 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~--------------v~~~~------~-------~~~i~~ 687 (743)
..+ .+.|...+|+|+|..+|++++.. -++|.+... ++ +..+. + ...+++
T Consensus 277 ~lg-sgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law 353 (445)
T KOG2139|consen 277 ILG-SGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW 353 (445)
T ss_pred ecc-CCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE
Confidence 433 45899999999999999998854 455554311 10 00110 0 134889
Q ss_pred ecCCCEEEEEecCCe
Q 004594 688 ILKGCFILNSIFNCY 702 (743)
Q Consensus 688 s~~g~~L~sgs~Dg~ 702 (743)
.|.|.|+++....+.
T Consensus 354 DpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 354 DPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCCCEEEEEEcCCc
Confidence 999999998765443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-10 Score=115.06 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=144.5
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t---~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
+..-..+|+|.+|++|+..+|++...+.|.||.... .+..+++..|...|++|+|+|..++|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 333456799999999999999999999999998765 45788999999999999999999999999999999999984
Q ss_pred CCC--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE---EEEe-----ccCceeeecCCCEEEEE
Q 004594 628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-----VCNLMPIILKGCFILNS 697 (743)
Q Consensus 628 ~~~--~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v---~~~~-----~~~~i~~s~~g~~L~sg 697 (743)
.+. .+.-.+..|...+++|.|+|.+ +.|++|+....|.||-++...-- +.++ ....+.++|++-.++.|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 433 2345666788999999999995 47889998999999988743211 0111 12557799999999999
Q ss_pred ecCCeEEEEecccc------------------------------eEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 698 IFNCYLLLHRIFLN------------------------------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 698 s~Dg~v~vh~~~v~------------------------------~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+.|+..+|....++ +..+.+.+.+..|+=.++|++|.+-|.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999998433322 122333344667888888888877553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.2e-10 Score=124.48 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeE
Q 004594 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs-~Dg~V~IW--d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sg-s~Dg~V~vWDl~~~~~~l 633 (743)
..+++|+|||+.|+.++ .|+.+.|| |+.+++ ...+..|...+.++.|+||++.|+.+ ..++.+.||+++......
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 34689999999888765 68876665 555555 45566777788899999999977654 467888999876433323
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecCCeEEEEe
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
..+ .+.. .++.|+|+|..+++++ .++ |.+||+.++++...... .....|+|+|.+|+.++.++.+.+|.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 333 3443 4678999998665444 454 66699998876533222 24467999999999999888776654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=124.85 Aligned_cols=182 Identities=16% Similarity=0.112 Sum_probs=130.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeE--EE----EEccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 004594 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWD 625 (743)
Q Consensus 555 ~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~--~~----~l~~H~~~V~~l~fspd~--~~L~Sgs~Dg~V~vWD 625 (743)
...|+|+.|+| +..++|.|+.+|.|.+||++.+.. .. ....|..+|+.+.|..+. .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45699999999 778999999999999999987554 21 224688999999997653 4599999999999999
Q ss_pred CCCCCeeEEE-----Ee------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE---CCCCeEEEEEec------c---
Q 004594 626 TENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGSCAGVFKV------C--- 682 (743)
Q Consensus 626 l~~~~~~l~~-----l~------gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWD---l~tg~~v~~~~~------~--- 682 (743)
++....+... .. .-...++++.|.+..++.|+.|+.+|.|..=+ .+.... ..+++ |
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VSYKGHSTFITHIGP 400 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-ccccccccccccCcc
Confidence 8764432211 11 12246899999999888999999999987733 322220 12222 1
Q ss_pred -CceeeecCCCEEEEEecCCeEEEEecc---------------cceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 683 -NLMPIILKGCFILNSIFNCYLLLHRIF---------------LNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 683 -~~i~~s~~g~~L~sgs~Dg~v~vh~~~---------------v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..+.++|-+..++..+.|-+++||... +....|++.. +..++++..||.|.+||-
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhh
Confidence 234556665555555559999998766 3445666654 678999999999999984
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=121.29 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=119.5
Q ss_pred EEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC------CCeEEEEEcc-CCCCEEEEEEcCCCCEEEEEeCCCe
Q 004594 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 548 ~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~------t~~~~~~l~~-H~~~V~~l~fspd~~~L~Sgs~Dg~ 620 (743)
.+.+.+|.+.|.+|.|+..+++||+|+.|..++||+++ +.+++..... |...|.|++|+...+.|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34567999999999999999999999999999999985 3456655544 4589999999998899999999999
Q ss_pred EEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe----EEEEEec---cCceeeecC-
Q 004594 621 VRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKV---CNLMPIILK- 690 (743)
Q Consensus 621 V~vWDl~~~~~~l~~l~g--h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~----~v~~~~~---~~~i~~s~~- 690 (743)
|.+.|+.+... +.++.. ..+.|+.+..+|. .++|++.+.++.|.|||++... .+..... ...+.|+|-
T Consensus 129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999998553 555542 2358999999999 5688899999999999998643 1111111 122446654
Q ss_pred CCEEEEEecCCeEEEEe
Q 004594 691 GCFILNSIFNCYLLLHR 707 (743)
Q Consensus 691 g~~L~sgs~Dg~v~vh~ 707 (743)
..+|++.+..+-+.+|+
T Consensus 207 P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFD 223 (609)
T ss_pred ceeEEeccccCCCCcee
Confidence 44566666666655544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-09 Score=113.26 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=146.5
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCC--Cc
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHD--KK 578 (743)
Q Consensus 502 l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~D--g~ 578 (743)
+.-.+.+|.++-.+|++.+|....+... -.+...+..+ ..+..+.-++. ..++|+|+.. ..
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~h---------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLH---------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccc---------------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 3444678888888999999955433100 1112222223 34666776764 4466779988 88
Q ss_pred EEEEECCCCeEEEEEcc---------CCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 004594 579 AVLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (743)
Q Consensus 579 V~IWd~~t~~~~~~l~~---------H~~~V~~l~fspd--~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~ 647 (743)
++|||++..+.+..-+. -.-+++++.|-+. ...|++++.-+.||+||.+..+.++..|.-.+.+|+++.
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 99999988754433221 1235788999886 788999999999999999999999999988889999999
Q ss_pred EecCCCeEEEEEeCCCcEEEEECCCCeEEEE-Eecc----CceeeecCCCEEEEEecCCeEEEEecccc
Q 004594 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 648 fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~-~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~ 711 (743)
..|++. +++++..-+.+..||++.++.... +++. +.+..+|.+.++++++.|..|+||+....
T Consensus 255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999987 566888899999999999988777 5543 45778899999999999999999987663
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=122.63 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=141.5
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEEc--------------------------
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAVLWCTESFTVKSTLE-------------------------- 594 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg---~~LaSgs~Dg~V~IWd~~t~~~~~~l~-------------------------- 594 (743)
+...+..+.+|+.+++.+.+.|.. .++++++.||+|++||...+..++++.
T Consensus 46 Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~ 125 (792)
T KOG1963|consen 46 TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE 125 (792)
T ss_pred hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc
Confidence 334566889999999999998843 467799999999999876544433321
Q ss_pred -----------------------------------------------------------------------------cCC
Q 004594 595 -----------------------------------------------------------------------------EHT 597 (743)
Q Consensus 595 -----------------------------------------------------------------------------~H~ 597 (743)
.|+
T Consensus 126 ~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 126 DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred cceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhc
Confidence 255
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 004594 598 QWITDVRFSPSLSRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 598 ~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~---~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~ 674 (743)
..++|++++|+++++++|..||.|.+|.--. .......+.-|...|+++.|+++|.+++ ||+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCC
Confidence 5678999999999999999999999996432 2333567788999999999999998655 99999999999999987
Q ss_pred EEEEEec----cCceeeecCCCEEEEEecCCeEEEEeccc-----------------------ceEEEeecCCCCEEEEE
Q 004594 675 CAGVFKV----CNLMPIILKGCFILNSIFNCYLLLHRIFL-----------------------NLLSVSEWCNPDEISTS 727 (743)
Q Consensus 675 ~v~~~~~----~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v-----------------------~~l~vs~~~~~~~laSg 727 (743)
..-+.. ...+.++||+.+......|..|.+-.... -...++.++..+.++-.
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 223322 24477889999998888898887722210 01122222224567777
Q ss_pred eCCCcEEEeC
Q 004594 728 SWKDSCCSHR 737 (743)
Q Consensus 728 s~DG~V~iWd 737 (743)
+..|.|.+||
T Consensus 364 ~~~g~vQ~yd 373 (792)
T KOG1963|consen 364 GHPGHVQFYD 373 (792)
T ss_pred CCCceEEEEe
Confidence 7888888876
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=129.82 Aligned_cols=143 Identities=22% Similarity=0.360 Sum_probs=119.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
.=++++|+.-+-+.+|....+. .+ ..+.+|.+.|..+.|+.||+++++.|+|.++|+|+++
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn------------------~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~ 205 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN------------------KP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID 205 (967)
T ss_pred EEEEEeccccccEEEEeccccC------------------Cc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecc
Confidence 3467888888888888654221 11 1678999999999999999999999999999999999
Q ss_pred CCeEEE-EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC
Q 004594 586 SFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 586 t~~~~~-~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~-~~V~sl~fspdg~~llaSgs~Dg 663 (743)
+.+... +.-+|+++|+.++|+|+ +++|++.|-+.++|+.+... +.++.+|. ..|..++..++. .+++|++.|+
T Consensus 206 s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds 280 (967)
T KOG0974|consen 206 SREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDS 280 (967)
T ss_pred cccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCc-eEEEeeccCc
Confidence 977665 67799999999999998 99999999999999776422 56888886 468999988774 5778999999
Q ss_pred cEEEEECCC
Q 004594 664 EIRYWSINN 672 (743)
Q Consensus 664 ~IrvWDl~t 672 (743)
.|++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=127.94 Aligned_cols=169 Identities=17% Similarity=0.146 Sum_probs=124.1
Q ss_pred eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEEccCCCCEEEEEEcCCCCEEEEE
Q 004594 544 TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-------~~~~~~l~~H~~~V~~l~fspd~~~L~Sg 615 (743)
+...+..+..|+..|..++.++ ++.+|+|||.||+|||||++. .+...++.....++.++.+.+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 3457888899999999999987 459999999999999999864 12333444456789999999999999999
Q ss_pred eCCCeEEEEECCCC--Ce----eEEEEecCC-CCeEE-EEEecC-CCeEEEEEeCCCcEEEEECCCCeEEEEEec-----
Q 004594 616 SADRTVRVWDTENP--DY----SLRTFTGHS-TTVMS-LDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKV----- 681 (743)
Q Consensus 616 s~Dg~V~vWDl~~~--~~----~l~~l~gh~-~~V~s-l~fspd-g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----- 681 (743)
+.||.|++.+++.. .. +.+....+. +.|.+ .+|... +..+++.+..-+.|..||+++......++.
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998752 11 111111121 23333 334333 234777888889999999998655544432
Q ss_pred -cCceeeecCCCEEEEEecCCeEEEEecccce
Q 004594 682 -CNLMPIILKGCFILNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 682 -~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~ 712 (743)
.++++++|.++|++.|+..|.+.+|+.....
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 3568899999999999999999999866443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=120.60 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=128.4
Q ss_pred CCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCe
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+.+-.|++||. -|.+.+.||.|++|.- .+ ....++.-...+|
T Consensus 104 ~~A~~~gRW~~dGt---------------gLlt~GEDG~iKiWSr-----------------sG---MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 104 AAAISSGRWSPDGA---------------GLLTAGEDGVIKIWSR-----------------SG---MLRSTVVQNEESI 148 (737)
T ss_pred hhhhhhcccCCCCc---------------eeeeecCCceEEEEec-----------------cc---hHHHHHhhcCcee
Confidence 33445556666664 5788889999999922 11 1112233345679
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
+|++|.|+.+.++-+-. +.+.|--+.....+-.++.|.+-|.|+.|++..+++++|+.|-..+|||... . .+..-..
T Consensus 149 ~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~ 225 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAA 225 (737)
T ss_pred EEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-c-ccccCCh
Confidence 99999997765544432 3455555544444556889999999999999999999999999999999763 3 3566667
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
|+-+|++++|+|+ + +++.++. .++|+=..+.|... .++|++||.-+++|...|.+.+
T Consensus 226 ~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~GSif-------nlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVGSIF-------NLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hccceeeeeeccc-c-ceeeeee-eeeeecCCCccceE-------EEEEcCCCceeeccccCceEEE
Confidence 9999999999999 3 5656774 47886555555432 3678899999988888887766
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=110.49 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=114.7
Q ss_pred CCCCCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCC----------eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 553 ASTSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 553 ~H~~~V~~i~fsp-dg~--~LaSgs~Dg~V~IWd~~t~----------~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
+..+.|.|..|.. ++. +++.|-++|.|.+||+.++ +.+.....|..+|.++.|.+....=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 4557788888644 333 4667778999999999986 33344457999999999988655667888899
Q ss_pred eEEEEECCCCCe--eEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCC
Q 004594 620 TVRVWDTENPDY--SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGC 692 (743)
Q Consensus 620 ~V~vWDl~~~~~--~l~-~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~ 692 (743)
.+..|.+..... .+. ++.-....|..+..-||++ ++|+++.|+.||||..++...+.+++.| ..++|+|+..
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 999998875321 111 1121234588999999976 8999999999999999999998888766 3466777777
Q ss_pred EEEEEecCCeEEEEe
Q 004594 693 FILNSIFNCYLLLHR 707 (743)
Q Consensus 693 ~L~sgs~Dg~v~vh~ 707 (743)
.++.++.|.+|.+|+
T Consensus 307 lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 307 LMAAASKDARISLWK 321 (323)
T ss_pred hhhhccCCceEEeee
Confidence 777777777777765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=122.94 Aligned_cols=163 Identities=12% Similarity=0.163 Sum_probs=131.2
Q ss_pred CceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 542 ~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
+....++++++.|.. |..+.|-|.--+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-.-.+-+|...|+|
T Consensus 197 D~~GtElHClk~~~~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 197 DNNGTELHCLKRHIR-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred cCCCcEEeehhhcCc-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceE
Confidence 344567888888765 8999999988899999999999999999999999888888889999999988889999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-c--CceeeecCCCEEEEEe
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-C--NLMPIILKGCFILNSI 698 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-~--~~i~~s~~g~~L~sgs 698 (743)
.+|....... +..+..|.++|.+|+++++|. +++|.+.|..|+|||+++...+.++.. + ..++++..| ++..+
T Consensus 276 SlWSP~skeP-LvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~ 351 (545)
T KOG1272|consen 276 SLWSPNSKEP-LVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALS 351 (545)
T ss_pred EecCCCCcch-HHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeee
Confidence 9999987554 667778999999999999987 566888999999999999877776665 2 224444444 33344
Q ss_pred cCCeEEEEecc
Q 004594 699 FNCYLLLHRIF 709 (743)
Q Consensus 699 ~Dg~v~vh~~~ 709 (743)
....|.+|...
T Consensus 352 ~G~~v~iw~d~ 362 (545)
T KOG1272|consen 352 YGDHVQIWKDA 362 (545)
T ss_pred cCCeeeeehhh
Confidence 44456665443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-09 Score=116.04 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=109.2
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 004594 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (743)
Q Consensus 550 ~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg~V~vWD 625 (743)
.+..+...|.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344667789999999999999887753 359999998887543 333445677899999998875 567788877776
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEE-Eec--cCceeeecCCCEEEEEecC
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGV-FKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl--~tg~~v~~-~~~--~~~i~~s~~g~~L~sgs~D 700 (743)
++.....+..+..+...+.+..|+|||+.+++++..++...||.+ .+++.... +.+ .....|+|+|++|+..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 543222245566666667788999999988776665667777755 44443222 222 1346799999999877655
Q ss_pred C---eEEEEec
Q 004594 701 C---YLLLHRI 708 (743)
Q Consensus 701 g---~v~vh~~ 708 (743)
+ .|.+++.
T Consensus 349 ~g~~~I~v~d~ 359 (427)
T PRK02889 349 GGAFKLYVQDL 359 (427)
T ss_pred CCcEEEEEEEC
Confidence 4 4666653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=113.76 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=113.1
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCe--EE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~---Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg~--V~ 622 (743)
..+..|...|.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 445677888999999999998888764 467999999887654 4556677788999999998764 5555655 77
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEec---cCceeeecCCCEEEEE
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sg 697 (743)
+||+.++. +..+..+........|+|||+.++++...++ .|.+||+..++....... .....|+|+|++|+..
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence 77888754 4556666666788999999987776655444 588889887655433322 2346799999999876
Q ss_pred ecCC---eEEEEe
Q 004594 698 IFNC---YLLLHR 707 (743)
Q Consensus 698 s~Dg---~v~vh~ 707 (743)
+.++ .|.+++
T Consensus 352 ~~~~~~~~i~~~d 364 (435)
T PRK05137 352 KQGGGQFSIGVMK 364 (435)
T ss_pred EcCCCceEEEEEE
Confidence 5432 455554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=111.85 Aligned_cols=118 Identities=22% Similarity=0.336 Sum_probs=98.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 004594 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs--~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~-V~vWDl~~~ 629 (743)
.+...+.++++++.+.++|--+ .-|.|.|||+.+.+.+.++..|++.|-|++|+++|.+|||++..|+ |||+++.++
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 3555577777777778887543 3588999999999999999999999999999999999999999887 689999988
Q ss_pred CeeEEEEecCC--CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 630 DYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 630 ~~~l~~l~gh~--~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
.. +..|..-. ..|.+++|+|++. +|++.|..++|+||.++.
T Consensus 207 ~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred cE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 76 66666433 4588999999987 666777788999999874
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=113.83 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=111.3
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg--~V~ 622 (743)
..+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++.. .+..+.+.+.+++|+|+++.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999999888743 36999999887654 3344455566889999998774 555555 599
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEE-ec--cCceeeecCCCEEEEE
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF-KV--CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~--IrvWDl~tg~~v~~~-~~--~~~i~~s~~g~~L~sg 697 (743)
+||+.++. +..+..+......++|+|+|..++++...++. |.++|+.+++..... .+ .....|+|+|++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 35555666666789999999877777666665 666677776543322 22 2346899999998876
Q ss_pred ecCC---eEEEEec
Q 004594 698 IFNC---YLLLHRI 708 (743)
Q Consensus 698 s~Dg---~v~vh~~ 708 (743)
+.++ .|.+|+.
T Consensus 354 ~~~~~~~~I~v~d~ 367 (433)
T PRK04922 354 HGSGGQYRIAVMDL 367 (433)
T ss_pred ECCCCceeEEEEEC
Confidence 5432 4666654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=126.22 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=119.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC
Q 004594 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (743)
Q Consensus 561 i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~ 640 (743)
+-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-+|++++|.+.|.++|+|++++.+....+.-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 44566777999999999999999864333335889999999999999999999999999999999999776554667899
Q ss_pred CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC-----ceeeecCCCEEEEEecCCeEEEEecc
Q 004594 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 641 ~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
..|..++|+|. .+++++.|.+.|+|+.+ ++.+.+|..|. .+.+.++...+++++.|+.+++|+..
T Consensus 219 aRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 219 ARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999999987 67799999999999765 44445666552 36677888889999999999996543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=112.43 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=128.3
Q ss_pred CCCCEEEEeeCC--CcEEEEecCCCCCCCCccccccccCCCce---eeeEEEeeCCCCCeEEEEEcCC--CCEEEEEeCC
Q 004594 504 DMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFT---FTEFQLIPASTSKVESCHFSPD--GKLLATGGHD 576 (743)
Q Consensus 504 d~~~~l~sGs~D--~~V~lw~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~H~~~V~~i~fspd--g~~LaSgs~D 576 (743)
.+..++++|+.. ..+++|+.... ..+|....... .-++. -.++++.|-+. ...||++..-
T Consensus 159 ~~p~Iva~GGke~~n~lkiwdle~~-------~qiw~aKNvpnD~L~LrVP------vW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 159 TDPYIVATGGKENINELKIWDLEQS-------KQIWSAKNVPNDRLGLRVP------VWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred CCCceEecCchhcccceeeeecccc-------eeeeeccCCCCccccceee------eeeccceecCCCCCceEEEEecc
Confidence 345788889998 88999976544 22333222111 11111 24788999886 7899999999
Q ss_pred CcEEEEECCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeE
Q 004594 577 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 577 g~V~IWd~~t~-~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~l 655 (743)
+.|++||.+.+ +++..|..-..+|+++...|+++.|++|..-+.+..||++.+....+.+.+..+.|.+|..||.++ +
T Consensus 226 hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~ 304 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-V 304 (412)
T ss_pred eeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-e
Confidence 99999999874 577888877899999999999999999999999999999998876667999999999999999976 8
Q ss_pred EEEEeCCCcEEEEECCCCeEEE
Q 004594 656 LCSCDNNSEIRYWSINNGSCAG 677 (743)
Q Consensus 656 laSgs~Dg~IrvWDl~tg~~v~ 677 (743)
+++||-|+.|||+|+.+.+.+.
T Consensus 305 las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 305 LASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred EEeeccceeEEEeecccchhhh
Confidence 8899999999999999865543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-09 Score=107.34 Aligned_cols=230 Identities=17% Similarity=0.247 Sum_probs=159.0
Q ss_pred CCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCC--
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-- 554 (743)
Q Consensus 477 ~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-- 554 (743)
.-..-++++.|..+| .+|++|..+|.|.+|.-.....+ .......+..|
T Consensus 23 teadiis~vef~~~G---------------e~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshep 73 (433)
T KOG1354|consen 23 TEADIISAVEFDHYG---------------ERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEP 73 (433)
T ss_pred chhcceeeEEeeccc---------------ceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCc
Confidence 334556667777766 68999999999999944332211 12222223222
Q ss_pred ----------CCCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCe----------------------------------
Q 004594 555 ----------TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFT---------------------------------- 588 (743)
Q Consensus 555 ----------~~~V~~i~fspdg~--~LaSgs~Dg~V~IWd~~t~~---------------------------------- 588 (743)
..+|..|.|.+++. .++....|++|++|.+....
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea 153 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA 153 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee
Confidence 34688999998654 67778889999999775311
Q ss_pred -EEEEE-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCeEEEEE
Q 004594 589 -VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSC 659 (743)
Q Consensus 589 -~~~~l-~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~--l~~l~gh~-----~~V~sl~fspdg~~llaSg 659 (743)
+.+.+ .+|+..|.++.++.|...++++ .|=.|.+|.+.-...+ +..++.+. ..|++..|||...++|+-.
T Consensus 154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred eeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 01111 3588889999999998888887 4889999998754432 23333332 4689999999988888888
Q ss_pred eCCCcEEEEECCCCe-EEE---EEe----------------ccCceeeecCCCEEEEEecCCeEEEEecccc--------
Q 004594 660 DNNSEIRYWSINNGS-CAG---VFK----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFLN-------- 711 (743)
Q Consensus 660 s~Dg~IrvWDl~tg~-~v~---~~~----------------~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~-------- 711 (743)
+..|+||+-|+|... |.. .+. ..+.+.|+..|+|+++...- +|++|+....
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYP 311 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEe
Confidence 889999999999432 111 111 11347799999999987654 7888876321
Q ss_pred --------------------eEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 712 --------------------LLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 712 --------------------~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
-+..++.++..++.|||+...+++++
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 23445555577999999999999997
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=131.39 Aligned_cols=179 Identities=22% Similarity=0.308 Sum_probs=141.1
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
++..+-.+|+.|+.|++|.+..+. .....++ .-...|+.+.|+..|+.+..+..||.+.+|-
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCC----------------eEEEeec--cCcchhhhhhhcccCCceeeeccCCceeecc
Confidence 345788999999999999654431 1111111 2227799999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
+. .++......|.....+++|-. ..+++++. ++.|.+||.......-..-+.|.+.++++++.|.. .+|++||
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecC
Confidence 87 577777888999999999975 66777654 88999999754432222227899999999999985 4888999
Q ss_pred CCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 661 NNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
.+|.|++||++..+.++.+.. ++ ...++++|+..|.++||+...
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----hh-hhheeeccCcccceEEEEccc
Confidence 999999999998888777765 44 677899999999999987653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=113.83 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEC--CC
Q 004594 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT--EN 628 (743)
Q Consensus 555 ~~~V~~i~fspdg~~La-Sgs~Dg~V~IWd~--~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vWDl--~~ 628 (743)
.+.+.+.+|+|||+.|+ +.+.|+...||.+ .++. ...+..|...+....|+|||+.|+..+ .++...||.+ ..
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 34467899999999876 5677887777754 4433 455666666677889999999877554 4566666655 43
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecCC
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~Dg 701 (743)
+.. ..+..+........|+|+|+.+++++..++ .|.+||+.+++....... .....|+|+|++|+..+.++
T Consensus 318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC
Confidence 332 222222334456899999987665554333 699999998865433322 24578999999988887654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=110.00 Aligned_cols=114 Identities=18% Similarity=0.370 Sum_probs=90.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L-~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
-++|||+|++||+++. ..+.|-|.++.+....+.. -..|..+.|..|..++ +....|+.|.+|++..++. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeee-eEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 3789999999999984 4788888887665443332 4567888998876654 5556799999999998776 455555
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v 676 (743)
....+.+++|+|+|+++|.+..-|-.|.||.+.+.++.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 66789999999999999999999999999999887654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-07 Score=98.04 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=112.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEccCC--CCEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHT--QWITDVRFSPSLSRLAT-SSADRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~-t~~~~~~l~~H~--~~V~~l~fspd~~~L~S-gs~Dg~V~vWDl~~~ 629 (743)
...+|.+|.+.++ .|++.- +++|.||... +.+.++.++.-. ..+.+++-+.+..+||. |-.-|.|.|-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3456999999755 555554 6789999987 555565554332 33444433333444543 345799999999875
Q ss_pred Ce-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCeEEEEEeccC------ceeeecCCCEEEEEecCC
Q 004594 630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCN------LMPIILKGCFILNSIFNC 701 (743)
Q Consensus 630 ~~-~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~-IrvWDl~tg~~v~~~~~~~------~i~~s~~g~~L~sgs~Dg 701 (743)
.. +-..+..|.+.|.+++.+-+|. ++||+|..|+ |||||..+|+.+.+++... .++|+|++.||++.|+.|
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 54 3467889999999999999986 8889999988 8999999999999998542 378999999999999999
Q ss_pred eEEEE
Q 004594 702 YLLLH 706 (743)
Q Consensus 702 ~v~vh 706 (743)
++.+.
T Consensus 249 TlHiF 253 (346)
T KOG2111|consen 249 TLHIF 253 (346)
T ss_pred eEEEE
Confidence 99994
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-08 Score=108.66 Aligned_cols=184 Identities=18% Similarity=0.132 Sum_probs=119.1
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 004594 551 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 624 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~LaSgs~---Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sg-s~Dg--~V~vW 624 (743)
+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++... +....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4456678999999999998886543 3569999998876433 22334445678999999988654 4454 58899
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCeEEEEEe-c--cCceeeecCCCEEEEEec
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFK-V--CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvW--Dl~tg~~v~~~~-~--~~~i~~s~~g~~L~sgs~ 699 (743)
|+.++. +..+..+...+....|+|+|+.++++...++..+|| |+.+++...... . .....++|+|++|+..+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 344554556788999999998777666555555555 666665432221 1 134678999999887654
Q ss_pred C-C--eEEEEecccc----------eEEEeecCCCCEEEEEeCCCc---EEEeC
Q 004594 700 N-C--YLLLHRIFLN----------LLSVSEWCNPDEISTSSWKDS---CCSHR 737 (743)
Q Consensus 700 D-g--~v~vh~~~v~----------~l~vs~~~~~~~laSgs~DG~---V~iWd 737 (743)
+ + .|.+++.... .....+.+++..|+..+.++. +.+|+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred cCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3 2 3445442211 111233455777887777764 44444
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-08 Score=99.28 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~--~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
..++.|++.+..++++..+|.+.+-+...... +.++++|...++...|+. +.+++++|+.|+.+..||+|.+..++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 56788999999999999999998555444333 347889999999999977 467899999999999999996555444
Q ss_pred E-EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEE
Q 004594 635 T-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA 676 (743)
Q Consensus 635 ~-l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t-g~~v 676 (743)
. .+-|...|.+|.-+|..+.++++|+.|-.|++||.|+ ++++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 4 5678999999999998888999999999999999994 4544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-08 Score=108.77 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCCe
Q 004594 558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTENPDY 631 (743)
Q Consensus 558 V~~i~fspdg~~LaSg-s~Dg--~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vW--Dl~~~~~ 631 (743)
+..++|+|||+.|+.. +.++ .|.+||+++++... +..+...+....|+||++.|+.++. ++...|| |+.++.
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence 4568999999988755 4454 48889998876654 4445566789999999998866654 4444444 666544
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecCCe
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~D--g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~Dg~ 702 (743)
...+..+...+....|+|+|+.+++++..+ ..|.+||+.+++....... .....|+|||.+|+..+.++.
T Consensus 323 -~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 323 -PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 334444445567789999998777665544 3588899988864432222 234679999999999988764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=107.10 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-CCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe---
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--- 631 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~-H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~--- 631 (743)
.+..++|++.-..+|++..|-+|++||-.. ++...++. -...|+|++|.|. +..|+.|+. +-|.+|.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 477899999777899999999999999765 44444432 2356999999995 566777764 5589997653211
Q ss_pred --------e--EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-e---ccCceeeecCCCEEEEE
Q 004594 632 --------S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---VCNLMPIILKGCFILNS 697 (743)
Q Consensus 632 --------~--l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~-~---~~~~i~~s~~g~~L~sg 697 (743)
+ +....+| ..|+++.|.+||..++.++-.|..|+|||..++.++... + +.+.+.|+|||.+|+.+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 2233455 679999999999866655557788999999999877555 2 23457899999999999
Q ss_pred ecCCeEEEE
Q 004594 698 IFNCYLLLH 706 (743)
Q Consensus 698 s~Dg~v~vh 706 (743)
+.|+..++|
T Consensus 257 t~davfrlw 265 (445)
T KOG2139|consen 257 TCDAVFRLW 265 (445)
T ss_pred cccceeeee
Confidence 999999997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-08 Score=108.54 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=100.8
Q ss_pred eeCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 004594 551 IPASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVW 624 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~La-Sgs~Dg~--V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg--~V~vW 624 (743)
+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.+++. ..+..+...+.+.+|+||++.|+..+. +| .|++|
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 344556678899999998765 5566665 77778887665 456667777788999999998876653 33 68888
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEec
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~ 699 (743)
|+..+. ...+..+...+....|+|+|+.++++.... ..|.+||+..+. ...+.. .....|+|+|++|+..+.
T Consensus 320 d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 320 NADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEc
Confidence 887644 344444455677789999998776655333 368888986543 333332 245779999999877654
Q ss_pred C
Q 004594 700 N 700 (743)
Q Consensus 700 D 700 (743)
+
T Consensus 397 ~ 397 (435)
T PRK05137 397 T 397 (435)
T ss_pred c
Confidence 3
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-09 Score=112.23 Aligned_cols=216 Identities=12% Similarity=0.065 Sum_probs=153.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd 583 (743)
+.++++||.|..|.+|++.... ....-..+|...|.-..|-| +.+-|++++.||.|++=.
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~------------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGS------------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CceeeccCccceEEeehhhccC------------------cccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 3689999999999999664431 11223357888888888887 556799999999999887
Q ss_pred CCC-CeE--EEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCee--EEEEecCCC---CeEEEEEecCCCe
Q 004594 584 TES-FTV--KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSLDFHPSKED 654 (743)
Q Consensus 584 ~~t-~~~--~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~--l~~l~gh~~---~V~sl~fspdg~~ 654 (743)
+.. +.+ ...+..|.+.|..++..|+ ...|.|++.|+.|.-+|++..... +.+-..+.. ...+++.+|...+
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 643 332 2345679999999999996 556899999999999999875421 222223333 5788999999888
Q ss_pred EEEEEeCCCcEEEEECCCCeE------EEEEe----------ccCceeeecCCCEEEEEecCCeEEEE------------
Q 004594 655 LLCSCDNNSEIRYWSINNGSC------AGVFK----------VCNLMPIILKGCFILNSIFNCYLLLH------------ 706 (743)
Q Consensus 655 llaSgs~Dg~IrvWDl~tg~~------v~~~~----------~~~~i~~s~~g~~L~sgs~Dg~v~vh------------ 706 (743)
.+++++.|-.+||||.+.-.. +..+- ..+++.++.++.-|++...|-.|.+.
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 999999999999999875321 12221 12446677777777777777666662
Q ss_pred ---------------ecccceEEEeecCC-CCEEEEEeCCCcEEEeCCC
Q 004594 707 ---------------RIFLNLLSVSEWCN-PDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 707 ---------------~~~v~~l~vs~~~~-~~~laSgs~DG~V~iWd~~ 739 (743)
...-++-.+.++++ ..+|++||.-|.|.||+..
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 22223334444443 4699999999999999864
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=110.47 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=113.5
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 004594 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 503 ~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW 582 (743)
.+..++++.+..+....+++...... +........+......|..+..+......-.+++.+.+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 44457888888777766665543321 11112222333333345555544444444455666777788
Q ss_pred ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 004594 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 583 d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D 662 (743)
....+.+. .+-||-..+++|+|+||+.+|+|++.|..|||-........-..+-||+..|..++.-++ +.|+|+|.|
T Consensus 138 s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD 214 (390)
T KOG3914|consen 138 SADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGD 214 (390)
T ss_pred cccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCC
Confidence 77764443 455899999999999999999999999999998776544322344589999999999876 357799999
Q ss_pred CcEEEEECCCCeEEEEEec
Q 004594 663 SEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~~~ 681 (743)
++||+||+++|++++++..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999999877653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-08 Score=109.95 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC
Q 004594 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT--VRVWDTEN 628 (743)
Q Consensus 555 ~~~V~~i~fspdg~~La-Sgs~Dg--~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~--V~vWDl~~ 628 (743)
.+.+.+++|+|||+.|+ +.+.++ .|.+||+.+++. ..+..|......++|+||++.|+.++ .++. |+++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456789999999775 555555 599999988765 34556666667899999999887665 3555 66667766
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecC
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~D 700 (743)
+.. ..+..+......++|+|+|..++++...++ .|.+||+.+++....... .....|+++|++|+..+.+
T Consensus 326 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 326 GSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec
Confidence 543 333223344557899999997776654333 599999988765422222 2346799999998877654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-07 Score=104.91 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=110.7
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg--~V~ 622 (743)
..+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +..+...+.+++|+|+++.|+ +.+.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3444566678999999999999887754 479999998876543 344566678899999998775 444444 588
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEec---cCceeeecCCCEEEEE
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sg 697 (743)
+||+.++. ...+..+...+....|+|+|..++++...++ .|.+||+.+++....... .....++|+|.+|+..
T Consensus 262 ~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 89988754 3445555555667899999987776665444 577888887765433222 1346789999999988
Q ss_pred ecCC---eEEEEec
Q 004594 698 IFNC---YLLLHRI 708 (743)
Q Consensus 698 s~Dg---~v~vh~~ 708 (743)
+.++ .|.+++.
T Consensus 340 ~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 340 HREGGGFNIAVMDL 353 (417)
T ss_pred EccCCceEEEEEeC
Confidence 7765 5555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=114.58 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=103.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--------------Ce--------------EEEEEccCCCCEEEEEEc
Q 004594 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTES--------------FT--------------VKSTLEEHTQWITDVRFS 606 (743)
Q Consensus 556 ~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t--------------~~--------------~~~~l~~H~~~V~~l~fs 606 (743)
..|+||.|-| +...|+.+-.+|.+.+||... +. ++..+.--.+.|..++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 6799999999 556777888899999997531 11 111122234568889999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc--
Q 004594 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-- 684 (743)
Q Consensus 607 pd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-- 684 (743)
|||++||+.+.||.+||||..+.+ .+..++..-+...||+|+|||+ +|++|++|--|.||.+...+.+..=.+|.+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999999999998744 3556666678899999999997 666999999999999999888877777643
Q ss_pred --eeeec
Q 004594 685 --MPIIL 689 (743)
Q Consensus 685 --i~~s~ 689 (743)
++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 55664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=104.54 Aligned_cols=151 Identities=23% Similarity=0.365 Sum_probs=108.4
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~-- 584 (743)
+.|.+|-..+++.-+...++ -......+....|...|..+-|+-.-+++++.+.|+.+.--..
T Consensus 81 ~~L~vg~~ngtvtefs~sed---------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSED---------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred eEEEEEEecceEEEEEhhhh---------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 56677777777777744333 1222344445566666666666665566666665543322111
Q ss_pred ---------------------------------------CCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 585 ---------------------------------------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 585 ---------------------------------------~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
.....+.++.+|.+.|+++.|.+...+|++|..|..|.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 11234566789999999999999999999999999999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg 673 (743)
+--.+.....+.+|...|..+...+.-. .+++|+.||.|-+||++..
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 9877766788889999999998876644 5669999999999999754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=114.32 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=130.2
Q ss_pred eeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ccCCCCEEEEEEcCC--CCEEEEEeCCCeE
Q 004594 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTV 621 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l-~~H~~~V~~l~fspd--~~~L~Sgs~Dg~V 621 (743)
+.....|..|.+.|..|.|+..|..|++|+.|..|.+||.-....+..+ .+|...|.-..|-|. ...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999887766555 578888988889883 5679999999999
Q ss_pred EEEECCCCCee--EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----------Cceeeec
Q 004594 622 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIIL 689 (743)
Q Consensus 622 ~vWDl~~~~~~--l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----------~~i~~s~ 689 (743)
++=.+....++ ...+..|.++|.-++..|+.++-|.+|+.|+.|.-+|++.+.....+.+. ..+++.|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887655543 24566799999999999999999999999999999999987544433321 2355666
Q ss_pred CCC-EEEEEecCCeEEEE
Q 004594 690 KGC-FILNSIFNCYLLLH 706 (743)
Q Consensus 690 ~g~-~L~sgs~Dg~v~vh 706 (743)
... .+++|+.|-.+++.
T Consensus 292 ~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVY 309 (559)
T ss_pred CCccccccCChhhhhhhh
Confidence 555 68888888877773
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-09 Score=115.04 Aligned_cols=177 Identities=16% Similarity=0.172 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
-+.+.|+.+|+.++.|+..|.|-.+|..+++....+.. ...|.++.|-.+..+||++ ....++|||-. +.. ++.++
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtE-lHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTE-LHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcE-Eeehh
Confidence 45688999999999999999999999999888777653 4568999998877777776 57889999965 343 77777
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc----CceeeecCCCEEEEEecCCeEEEEecc----
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIF---- 709 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~sgs~Dg~v~vh~~~---- 709 (743)
.| ..|..+.|-|- .+||++++..|.++.-|+.+|+.+..+... ..++..|....+-+|..+|+|.+|+..
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 66 46999999998 579999999999999999999998877643 346677888999999999999997643
Q ss_pred ----------cceEEEeecCCCCEEEEEeCCCcEEEeCCCccc
Q 004594 710 ----------LNLLSVSEWCNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 710 ----------v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~l~ 742 (743)
+..+++ ...+.+++|.|.|..|+|||-+.+|
T Consensus 286 LvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeecccc
Confidence 344444 4448899999999999999988765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=102.14 Aligned_cols=149 Identities=18% Similarity=0.146 Sum_probs=105.3
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCC--eEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg--~V~ 622 (743)
..+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|+|+.|+ +...++ .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3445667789999999999998876644 358899998876543 333445566789999998876 454555 688
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEe-c--cCceeeecCCCEEEEE
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-V--CNLMPIILKGCFILNS 697 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~-~--~~~i~~s~~g~~L~sg 697 (743)
+||+.++. ...+..+...+....|+|+|..++++...++ .|.+||+.+++...... + .....++|+|++|+..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998755 3455556666778899999998877765554 47777888776543322 2 1235789999998877
Q ss_pred ecC
Q 004594 698 IFN 700 (743)
Q Consensus 698 s~D 700 (743)
+.+
T Consensus 349 ~~~ 351 (430)
T PRK00178 349 HRQ 351 (430)
T ss_pred Ecc
Confidence 643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=107.09 Aligned_cols=156 Identities=15% Similarity=0.228 Sum_probs=122.9
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc------cCCC-----CEEEEEEcCCCCEEEEEeC
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSSA 617 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~------~H~~-----~V~~l~fspd~~~L~Sgs~ 617 (743)
.-+....+.|++|..++...+|++|+.||+|-.||.++...+.++. .|.+ .|+++.|+.+|-.+++|..
T Consensus 169 ~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 3344456789999999999999999999999999998866555543 2333 4999999999999999999
Q ss_pred CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCeEEEEEec---cCceeeecCCCE
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKV---CNLMPIILKGCF 693 (743)
Q Consensus 618 Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspd-g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~ 693 (743)
+|.|.|||+++....+..-.+..-+|..+.|.+. ....++|+. ...++|||-.+|+....+.. .+.+|+.|++..
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCce
Confidence 9999999999977655555555678999999776 233565665 56899999999988776654 355888899999
Q ss_pred EEEEecCCeEEE
Q 004594 694 ILNSIFNCYLLL 705 (743)
Q Consensus 694 L~sgs~Dg~v~v 705 (743)
++++-++..+..
T Consensus 328 ~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 328 FFTANESSKMHT 339 (703)
T ss_pred EEEecCCCccee
Confidence 999888765544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-08 Score=102.49 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=112.3
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-E--EEEEc-----cCCCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004594 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-V--KSTLE-----EHTQWITDVRFSPS-LSRLATSSADRTVR 622 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~-~--~~~l~-----~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~ 622 (743)
.+|+.-|.+|.++.|+..++++. |=.|.+|+++-.. . +.-++ .-+..|++..|||. .+.|+-++..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 36899999999999999888876 7789999986422 1 11222 23456899999995 67788888899999
Q ss_pred EEECCCCCeeEE---------------EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCeEEEEEeccC---
Q 004594 623 VWDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKVCN--- 683 (743)
Q Consensus 623 vWDl~~~~~~l~---------------~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~-tg~~v~~~~~~~--- 683 (743)
+.|++....|.. .|.+--+.|..+.|+.+|++++ +-+ =-+|++||+. ..+++.++..|.
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehHhHH
Confidence 999985433211 1222335688999999998655 443 2589999995 456677776541
Q ss_pred ----------------ceeeecCCCEEEEEecCCeEEEEe
Q 004594 684 ----------------LMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 684 ----------------~i~~s~~g~~L~sgs~Dg~v~vh~ 707 (743)
.++|+-++.++++|+....+++.+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 156777888999999999999966
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.8e-07 Score=100.30 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=98.8
Q ss_pred CCCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 004594 553 ASTSKVESCHFSPDGKLLAT-GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaS-gs~Dg--~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg--~V~vWDl 626 (743)
.+.+.+.+++|+|||+.|+. .+.++ .|.+||+.++... .+..|...+...+|+|++++|+.++. ++ .|++||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 34556778999999987764 44444 5888898876543 44455555667899999998876554 33 5788888
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecCC
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg---~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~Dg 701 (743)
.++. ...+..+...+..+.|+|+|..++++.. ++ .|.+||+.++........ .....|+|+|.+|+..+.++
T Consensus 310 ~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 310 DGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCC--EEEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 7654 3444445566788999999986665544 43 788899987654322211 23357899999988877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-05 Score=87.47 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=126.6
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE---Ec----------cCCCCEEEEEEcCC
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST---LE----------EHTQWITDVRFSPS 608 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t-~~~~~~---l~----------~H~~~V~~l~fspd 608 (743)
.+..+............++++|++++|+++.. ++.|.++++.. +..... +. .......++.|+|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 44555555434445667999999999999985 89999999986 443322 21 12355789999999
Q ss_pred CCEEEEEeC-CCeEEEEECCCCCeeE---EEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CCeE--EEEE
Q 004594 609 LSRLATSSA-DRTVRVWDTENPDYSL---RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC--AGVF 679 (743)
Q Consensus 609 ~~~L~Sgs~-Dg~V~vWDl~~~~~~l---~~l-~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~--tg~~--v~~~ 679 (743)
++++++... ...|++|++......+ ..+ .........+.|+|+++.+++.+-.+++|.+|++. ++.. +..+
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 998877654 6789999998755212 222 23446689999999999999999999999999998 4432 2222
Q ss_pred ec----------cCceeeecCCCEEEEEe-cCCeEEEEecc-----c-----------ceEEEeecCCCCEEEEEe-CCC
Q 004594 680 KV----------CNLMPIILKGCFILNSI-FNCYLLLHRIF-----L-----------NLLSVSEWCNPDEISTSS-WKD 731 (743)
Q Consensus 680 ~~----------~~~i~~s~~g~~L~sgs-~Dg~v~vh~~~-----v-----------~~l~vs~~~~~~~laSgs-~DG 731 (743)
.. ...+.++|+|++|+++. ....|.+.+.. + ....+...+++.+|+++. .++
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 21 12377999999988765 34566665431 1 122333444567777666 566
Q ss_pred cEEEeC
Q 004594 732 SCCSHR 737 (743)
Q Consensus 732 ~V~iWd 737 (743)
.|.+|+
T Consensus 315 ~v~vf~ 320 (345)
T PF10282_consen 315 TVSVFD 320 (345)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-09 Score=113.30 Aligned_cols=161 Identities=15% Similarity=0.246 Sum_probs=120.9
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 547 ~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t-------~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
....+.+|+.+|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4556789999999998777788899999999999998863 33667788999999999999888888776 99
Q ss_pred eEEEEECCCCCeeEEEEe-cCCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCeEEEEEecc---------Cceee
Q 004594 620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---------NLMPI 687 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l~-gh~~~V~sl~fsp--dg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---------~~i~~ 687 (743)
-|++||.--++....... ...+.+..+..-+ +...+++-|+...+|+++|.+..+.+..++.+ ..+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999876553221111 1122333333333 33445666689999999999999888887754 33678
Q ss_pred ecCCCEEEEEecCCeEEEEecc
Q 004594 688 ILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 688 s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
.+.|++++.+-.+|+|.+-+..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecC
Confidence 8999999999888888885544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-06 Score=97.79 Aligned_cols=129 Identities=17% Similarity=0.236 Sum_probs=108.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEc--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 004594 566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~--~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V 643 (743)
|-..|+-|...|.|.+|++..++....+. .|.+.|.++-++.+..+|.|++.|+.|.+|+...... ++.+.+-...+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence 34468888889999999999998877775 6999999999999999999999999999999987554 78888888899
Q ss_pred EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeecC-----CCEEEEEe
Q 004594 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIILK-----GCFILNSI 698 (743)
Q Consensus 644 ~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~~-----g~~L~sgs 698 (743)
.+++.+|||. ++++++ +.|++||+++++.+..|.+|.. +.|... |.|++++.
T Consensus 148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 9999999977 555666 6899999999999999999854 445544 77777653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=102.32 Aligned_cols=146 Identities=20% Similarity=0.243 Sum_probs=123.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
..++-|..-|.|.++....+ ..+..-.-..|.+.|.++.++.+-..|.+++.|+.|.+|+...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-----------------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-----------------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eEEEeecCCccEEEEEecCC-----------------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 56677777788887744333 1222222347999999999999989999999999999999999
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-----CCeEEEEEeC
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----KEDLLCSCDN 661 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspd-----g~~llaSgs~ 661 (743)
+..++.+.+....+.+++++||+..++++ .+.|++||+++.+. +.+|.||.++|.++.|-.. |.++|.+...
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEec--cceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 99999999999999999999999999988 58999999999665 9999999999999999877 7788888777
Q ss_pred CCcEEEEECCC
Q 004594 662 NSEIRYWSINN 672 (743)
Q Consensus 662 Dg~IrvWDl~t 672 (743)
+..|.+|-++.
T Consensus 211 ~r~i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERGITVWVVEK 221 (541)
T ss_pred ccceeEEEEEc
Confidence 88899998765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-07 Score=100.48 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC---CeEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE--
Q 004594 556 SKVESCHFSPDGKLLATGGH-----DKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW-- 624 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~-----Dg~V~IWd~~t---~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vW-- 624 (743)
+.....+|+|||+.|+..+. |..+.+|++.. ++......++.+.+...+|+|||+.|+..+ .+|...+|
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 34556899999998876653 33345577664 233333333334456789999999776554 56765555
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEec---cCceeeecCCCEEEEEec
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV---CNLMPIILKGCFILNSIF 699 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D--g~IrvWDl~tg~~v~~~~~---~~~i~~s~~g~~L~sgs~ 699 (743)
++.........+..+...+....|+|||+.+++++..+ ..|.+||+.++++...... .....|+|+|++|+....
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 44322222444555556678899999998777665543 3699999998876544332 234779999998875543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-07 Score=94.71 Aligned_cols=81 Identities=26% Similarity=0.312 Sum_probs=73.6
Q ss_pred EEeeCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEccC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~-V~IWd~~t~~~~~~l~~H--~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
..+.+|.+.|.|++.+-+|.+|||+|..|+ |||||..+++.+..++.- .+.|+|++|+|+..+|++++..|||+||.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 667899999999999999999999999998 799999999998888643 46799999999999999999999999999
Q ss_pred CCCC
Q 004594 626 TENP 629 (743)
Q Consensus 626 l~~~ 629 (743)
++..
T Consensus 255 l~~~ 258 (346)
T KOG2111|consen 255 LRDT 258 (346)
T ss_pred eecC
Confidence 8753
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-08 Score=111.44 Aligned_cols=127 Identities=20% Similarity=0.321 Sum_probs=105.6
Q ss_pred eEEEeeCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 547 ~~~~l~~H~~~V~~i~fspdg-~~LaSgs~Dg~V~IWd~~t~-~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
....+.+|+..|+.+-|+|.. ..+++++.|-.|..||+++. .++..+..-.....-|+|+.....+...+....|+||
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 344678999999999999944 58999999999999999874 3455554445567889999866666666788999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg 673 (743)
|++.+..++..+++|...|++++|..-....+.+++.|++|++||..+.
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 9999999999999999999999998776566779999999999998754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-06 Score=94.74 Aligned_cols=177 Identities=17% Similarity=0.140 Sum_probs=116.4
Q ss_pred EEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 004594 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589 (743)
Q Consensus 510 ~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~ 589 (743)
++-..++.|.+.+ ..+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+.+.
T Consensus 10 V~~~~~~~v~viD-------------------~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 10 VVERGSGSVAVID-------------------GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEGGGTEEEEEE-------------------TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEecCCCEEEEEE-------------------CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 4555678888873 333456666765544344578999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCeEEEEEeC
Q 004594 590 KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDN 661 (743)
Q Consensus 590 ~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vWDl~~~~~~l~~l~g-------h~~~V~sl~fspdg~~llaSgs~ 661 (743)
+.++.... ...++++++||+++++++ .++.|.++|.++.+. +..+.. ..+.+.+|..+|....++++--+
T Consensus 71 v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 71 VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 98887644 467899999999998776 599999999998664 555432 23567888888887766666665
Q ss_pred CCcEEEEECCCCeEE--EEEecc---CceeeecCCCEEEEEe-cCCeEEEEe
Q 004594 662 NSEIRYWSINNGSCA--GVFKVC---NLMPIILKGCFILNSI-FNCYLLLHR 707 (743)
Q Consensus 662 Dg~IrvWDl~tg~~v--~~~~~~---~~i~~s~~g~~L~sgs-~Dg~v~vh~ 707 (743)
.+.|.+-|....+.+ ..+... ....++++++|++.+. ....|.+.+
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 678888887765433 333332 3367889999987763 334454433
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=99.76 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=104.2
Q ss_pred EeeCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCe--EEE
Q 004594 550 LIPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VRV 623 (743)
Q Consensus 550 ~l~~H~~~V~~i~fspdg~~LaSgs~D-g--~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg~--V~v 623 (743)
.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +....+.....+|+||++.|+ +.+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344556678999999999988876543 3 58888988776533 322234455789999999775 4566665 777
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEE-Eecc--CceeeecCCCEEEEEe
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGV-FKVC--NLMPIILKGCFILNSI 698 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~--IrvWDl~tg~~v~~-~~~~--~~i~~s~~g~~L~sgs 698 (743)
||+.++. +..+..+...+...+|+|||..+++++..++. |.++|+.+++.... +.+. ....++|+|++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 45555566667889999999988877765554 66667877765432 2222 2357999999987765
Q ss_pred c-CCeEEE
Q 004594 699 F-NCYLLL 705 (743)
Q Consensus 699 ~-Dg~v~v 705 (743)
. ++...+
T Consensus 369 ~~~g~~~I 376 (448)
T PRK04792 369 RTNGKFNI 376 (448)
T ss_pred ecCCceEE
Confidence 4 343444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-06 Score=89.86 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=107.9
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE 585 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs-~Dg~V~IWd~~ 585 (743)
+++...+.|+.|.+++.... +.+..++.... ..++++++||+++++++ .++.|.|+|.+
T Consensus 49 r~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATG-------------------KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp SEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 67777788999999955433 34555554333 67899999999998776 58999999999
Q ss_pred CCeEEEEEccC-------CCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 004594 586 SFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 586 t~~~~~~l~~H-------~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~lla 657 (743)
+.+.+..+... ..++..|..+|....++..-. .+.|.+-|......................|+|+++++++
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence 99988877532 346788888888775655554 5888888987765444444445667889999999998888
Q ss_pred EEeCCCcEEEEECCCCeEEEEEec
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
+...+..|-++|.++++.+..+..
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-
T ss_pred cccccceeEEEeeccceEEEEeec
Confidence 877788999999999988776653
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=96.92 Aligned_cols=150 Identities=12% Similarity=0.229 Sum_probs=97.1
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 004594 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 579 V~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~lla 657 (743)
.++|+++-.+.+..-..-...|.+++-+|. ...+++|+.||.|-+||.++...++..+..|+..++-|-|||..+.-|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 445555433222211222344999999995 5677888999999999999988888899999999999999998766677
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEec-CCeEEEE------ecccceEEEeecCCCCEEEEEeCC
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF-NCYLLLH------RIFLNLLSVSEWCNPDEISTSSWK 730 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~-Dg~v~vh------~~~v~~l~vs~~~~~~~laSgs~D 730 (743)
+|++||.+..||..+. .+..-... +....|| +|.. ...|.+- ..+++.+.+- +..|++|+.-
T Consensus 241 t~sedGslw~wdas~~-~l~i~~~~-----s~~s~WL-sgD~v~s~i~i~~ll~~~~~SinsfDV~----g~~lVcgtd~ 309 (319)
T KOG4714|consen 241 TCSEDGSLWHWDASTT-FLSISNQA-----SVISSWL-SGDPVKSRIEITSLLPSRSLSINSFDVL----GPCLVCGTDA 309 (319)
T ss_pred EecCCCcEEEEcCCCc-eEEecCcc-----ccccccc-cCCcccceEeeeccccccceeeeeeecc----CceEEecccc
Confidence 9999999999998752 22100000 1111111 1111 1123332 1223333332 5589999999
Q ss_pred CcEEEeCCC
Q 004594 731 DSCCSHREL 739 (743)
Q Consensus 731 G~V~iWd~~ 739 (743)
+.|++++..
T Consensus 310 eaIyl~~~l 318 (319)
T KOG4714|consen 310 EAIYLTRHL 318 (319)
T ss_pred ceEEEeccc
Confidence 999998753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=97.86 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 004594 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP 629 (743)
Q Consensus 556 ~~V~~i~fspdg~~La-Sgs~Dg--~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg--~V~vWDl~~~ 629 (743)
+.+.+.+|+|||+.|+ +.+.++ .|.+||+.+++.. .+..+...+....|+|+++.|+..+. ++ .|+++|+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3455789999999876 444455 5788899887654 45556666777899999987765543 43 5777788766
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecC
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~D 700 (743)
.....++.+ .......|+|+|..++++...++ .|.+||+.+++....... .....|+|+|.+++..+.+
T Consensus 322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 322 RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence 532222222 23456789999987776665444 588899988765332221 2346799999998876654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=95.60 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=104.0
Q ss_pred eeeEEEeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEE-EccCCCCEEEEEEcC-CCCEEEEEeCCCe
Q 004594 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT 620 (743)
Q Consensus 545 ~~~~~~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t-~~~~~~-l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~ 620 (743)
...+...++|.-.+..++|+. +.+++++|++|+.+..||++. ++.+.. .+-|+..|.+|.-+| .+.+|+||+.|..
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 344567788999999999987 567999999999999999983 333332 456899999998887 5789999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCeE-----EEEEeccCceeeec
Q 004594 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSC-----AGVFKVCNLMPIIL 689 (743)
Q Consensus 621 V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~-llaSgs~Dg~IrvWDl~tg~~-----v~~~~~~~~i~~s~ 689 (743)
|++||.|+-..++..-. -.+.|+.+.++|.... +|++|-..| .+|-++..+.. ...++.|.++++..
T Consensus 235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 99999997665554332 3378999999997543 455555554 78887765432 23334455555443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=95.86 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=119.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~-- 637 (743)
+++++.-..-|++++....|.-++++.|..+..|....+.|.+|.+++...+|++|+.||.|-+||.+....+ .++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv-~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV-GTLDAA 216 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhh-eeeecc
Confidence 4555542233444555567888899999988888888899999999999899999999999999999986542 2222
Q ss_pred ----cCCC-----CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc-----eeeecC--CCEEEEEecCC
Q 004594 638 ----GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILK--GCFILNSIFNC 701 (743)
Q Consensus 638 ----gh~~-----~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~--g~~L~sgs~Dg 701 (743)
.|.+ .|+++.|..+| .-++.|..+|.|.|||+++.+++..-..... +.|.+. ...+++ ....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~ 294 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKR 294 (703)
T ss_pred cccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchH
Confidence 2333 49999999885 4567899999999999999877654443221 333333 233333 3344
Q ss_pred eEEEEeccc-----------ceEEEeecCCCCEEEEEeCCCcEEEe
Q 004594 702 YLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 702 ~v~vh~~~v-----------~~l~vs~~~~~~~laSgs~DG~V~iW 736 (743)
.++||+... ..-.+|..++.+.++++-.++.+..|
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 667775331 12234555668889998888877655
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-06 Score=95.63 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCEEEE-EeCCCc--EEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCCe
Q 004594 558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDY 631 (743)
Q Consensus 558 V~~i~fspdg~~LaS-gs~Dg~--V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg--~V~vWDl~~~~~ 631 (743)
....+|+|||+.|+. .+.++. |.+||+.+++. ..+..+...+...+|+||++.|+..+. ++ .|+++|+.++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 446899999997764 566665 77778877664 345556666778899999988765543 44 466667776553
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEec--cCceeeecCCCEEEEEecC
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV--CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~--IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sgs~D 700 (743)
...++.+ ......+|+|+|+.++++...++. |.++|+.+++....... .....|+|+|.+|+..+.+
T Consensus 343 ~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 343 SRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec
Confidence 2222332 234567999999987776655554 55578887764322221 1235799999988766544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-05 Score=96.26 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEccC-----------------CCCEEEEEEcC-CCCEEEEEeC
Q 004594 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSP-SLSRLATSSA 617 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t~~~~~~l~~H-----------------~~~V~~l~fsp-d~~~L~Sgs~ 617 (743)
.-..|++++++..|+++.. .+.|+++|+.++. +.++.+- -..-.+|+|+| ++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 3578999998887666654 5679999987754 3344210 11246899999 4666677778
Q ss_pred CCeEEEEECCCCCeeEEEEecC---------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE---
Q 004594 618 DRTVRVWDTENPDYSLRTFTGH---------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--- 679 (743)
Q Consensus 618 Dg~V~vWDl~~~~~~l~~l~gh---------------~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~--- 679 (743)
++.|++||..++.. ..+.+. -.....|+|+|++..++++.+.++.|++||+.++......
T Consensus 704 ~~~I~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999999987543 233221 1235679999999888888888899999999876532111
Q ss_pred ----------------------eccCceeeecCCCEEEEEecCCeEEEEecccce-------------------------
Q 004594 680 ----------------------KVCNLMPIILKGCFILNSIFNCYLLLHRIFLNL------------------------- 712 (743)
Q Consensus 680 ----------------------~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~------------------------- 712 (743)
.....++++++|..+++-+.+++|++++.....
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 112357788999988888999999998753211
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 713 LSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 713 l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..+....++..+++-+.+++|++||-
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 12233334567777788899999975
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=90.76 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=120.5
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeE
Q 004594 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaS-gs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~-L~Sgs~Dg~V~vWDl~~~~~~l 633 (743)
+.|.-|.|.-|..++++ ...|+.|.+|++.-.+-...+.+..+.+.+++|+|||+. |.+...|-.|.||.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence 45677888887776555 456789999999988888888888899999999999965 56777799999999998654
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEec----cCceeeecCCCEEEEEec--CCeEEE
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIF--NCYLLL 705 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~--IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~L~sgs~--Dg~v~v 705 (743)
..+......+..++|+|+|....+..-.|.. +.|.....-..++.++. .+.+.++|||++|++-.. +-.|..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2222233456889999999854433333321 11111111122333332 256889999999988654 333333
Q ss_pred --EecccceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 706 --HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 706 --h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+...+....|++. +.+++.|++|+.++|-+.
T Consensus 207 Ye~~lG~k~v~wsP~--~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPC--NQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eeeccceeEEEeccc--cceEEeeccchhhhhhce
Confidence 2344445555544 779999999999987543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-07 Score=93.97 Aligned_cols=85 Identities=16% Similarity=0.359 Sum_probs=74.4
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~-~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~ 622 (743)
....+.++.+|.+.|+|++|.+...+|++|..|..|.+||+--.+ ....+.+|...|..+..-+.-+.+++++.||.|-
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 345788899999999999999999999999999999999986533 3456778999999998888888999999999999
Q ss_pred EEECCC
Q 004594 623 VWDTEN 628 (743)
Q Consensus 623 vWDl~~ 628 (743)
+||++.
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-06 Score=94.20 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 004594 556 SKVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs-~Dg~V~IWd--~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~D---g~V~vWDl~~ 628 (743)
+.+...+|+|||+.|+..+ .++...||. +.. +.....+..+...+...+|+|||+.|+..+.+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3456789999999877665 467666664 432 23344555555677889999999988766543 4699999987
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCeEEEEE
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~--Dg~IrvWDl~tg~~v~~~ 679 (743)
+.. ..+......+.+..|+|+|..++++... +..|.+||+..++.....
T Consensus 361 g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 361 GRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 664 3444334457789999999887766553 356888899877654433
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.7e-08 Score=64.13 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHhcC
Q 004594 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (743)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~ 36 (743)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999985
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=88.24 Aligned_cols=227 Identities=14% Similarity=0.210 Sum_probs=140.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~--~LaSgs~Dg~V~IWd~ 584 (743)
.++++|...|.|.+|.-.....-..++....-.. ...+..+..+. -..+|..|.|..++. .++..+.|++|++|.+
T Consensus 39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQsh-e~EFDYLkSle-ieEKin~I~w~~~t~r~hFLlstNdktiKlWKi 116 (460)
T COG5170 39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSH-ELEFDYLKSLE-IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI 116 (460)
T ss_pred ceEeecCCCceEEEeecccccccchhhhhhhccc-ccchhhhhhcc-HHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence 6999999999999994332210011111100000 00111111111 124588888876442 5667778999999976
Q ss_pred CCCe------------------------------------------EEEEE-ccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 585 ESFT------------------------------------------VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 585 ~t~~------------------------------------------~~~~l-~~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
.... +.+.. ..|...|.++.|+.|...++++ .|=.|
T Consensus 117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrI 195 (460)
T COG5170 117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRI 195 (460)
T ss_pred ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceee
Confidence 4320 00111 3577788899999887777776 58899
Q ss_pred EEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EE-----E--EEec-----
Q 004594 622 RVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA-----G--VFKV----- 681 (743)
Q Consensus 622 ~vWDl~~~~~~--l~~l~gh~-----~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~-~v-----~--~~~~----- 681 (743)
.+|++.....+ +..++.|. ..|++..|||....++.-.+..|+|++-|+|... |. . .+.+
T Consensus 196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f 275 (460)
T COG5170 196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF 275 (460)
T ss_pred eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh
Confidence 99998765443 33444453 4588999999877777777779999999998422 11 0 0111
Q ss_pred -------cCceeeecCCCEEEEEecCCeEEEEecccc----------------------------eEEEeecCCCCEEEE
Q 004594 682 -------CNLMPIILKGCFILNSIFNCYLLLHRIFLN----------------------------LLSVSEWCNPDEIST 726 (743)
Q Consensus 682 -------~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~----------------------------~l~vs~~~~~~~laS 726 (743)
.+.+.|++.|+||++.... +|++|+.... .+.+.+.++...+.+
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~s 354 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLS 354 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccc
Confidence 1336789999999988765 7888875421 233445555677888
Q ss_pred EeCCCcEEEeC
Q 004594 727 SSWKDSCCSHR 737 (743)
Q Consensus 727 gs~DG~V~iWd 737 (743)
|++....-+|-
T Consensus 355 gsy~NNfgiyp 365 (460)
T COG5170 355 GSYSNNFGIYP 365 (460)
T ss_pred cccccceeeec
Confidence 88777666653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=77.68 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--E--EEEEc-cCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 004594 556 SKVESCHFSPDGKLLATGGH-DKKAVLWCTESFT--V--KSTLE-EHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN 628 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~-Dg~V~IWd~~t~~--~--~~~l~-~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vWDl~~ 628 (743)
....++.|+|+|+++++... ...|.+|+++... . ...+. .....-+.++|+|++++++... .+++|.++++..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 44789999999998887653 3479999987644 2 22222 2345678999999999886555 589999999983
Q ss_pred CCeeE---EEEec----C--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CCe--EEEEEec----cCceeeecCC
Q 004594 629 PDYSL---RTFTG----H--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFKV----CNLMPIILKG 691 (743)
Q Consensus 629 ~~~~l---~~l~g----h--~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~--tg~--~v~~~~~----~~~i~~s~~g 691 (743)
....+ ..+.. . ......|.++|+|++++++.-.+..|.+|++. +++ .+..+.. ...+.++++|
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 22112 22221 1 12578999999999999998888999999994 343 3333332 2458899999
Q ss_pred CEEEEEec-CCeEEEEec
Q 004594 692 CFILNSIF-NCYLLLHRI 708 (743)
Q Consensus 692 ~~L~sgs~-Dg~v~vh~~ 708 (743)
++|+++.. ++.|.+++.
T Consensus 304 ~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEE
Confidence 99998874 456766543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=96.29 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=100.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~-----~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~ 627 (743)
.++.|.++.|.-.+++++.|+..|.|.++|++.. .+...+ .|...|+|+..-. ++.+|++++.+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3456889999988999999999999999999864 333333 5899999998766 67889999999999999998
Q ss_pred CCCe--eEEEEecCCCCeEEEEEecC-CCeEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 004594 628 NPDY--SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 628 ~~~~--~l~~l~gh~~~V~sl~fspd-g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
..+. .+..+.||...-.-+-++-+ .+.++++++.|...|||.++.|..+.+++..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6331 27889998765544444432 2336678999999999999999988877653
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-05 Score=85.93 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=104.0
Q ss_pred EEEEcCCCC-EE--EEEeCCC---------cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEE
Q 004594 560 SCHFSPDGK-LL--ATGGHDK---------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS--SADRTVRVWD 625 (743)
Q Consensus 560 ~i~fspdg~-~L--aSgs~Dg---------~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sg--s~Dg~V~vWD 625 (743)
.+.|++-|. +| ++..-|+ ++.+.++....++..+ .-.++|.++.|+|+++-|+++ -.-..|.|||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn 300 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN 300 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence 466777555 22 3333344 5667676633333333 347899999999999776544 4477899999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCeEEEEEecc--CceeeecCCCEEEEEec--
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIF-- 699 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~--Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~L~sgs~-- 699 (743)
++. . ++..| ..++-+++-|+|.|..++++|-. -|.|-|||+.+.+++..+... +.+.|+|||.||++++.
T Consensus 301 lr~-~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 301 LRG-K-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCC-C-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 984 2 24444 45677899999999866655543 378999999999999888865 44779999999999976
Q ss_pred ----CCeEEEEecccceE
Q 004594 700 ----NCYLLLHRIFLNLL 713 (743)
Q Consensus 700 ----Dg~v~vh~~~v~~l 713 (743)
|+.++||......+
T Consensus 377 RlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cEEecCCeEEEEecCcee
Confidence 55566676655444
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=94.24 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=138.8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
++-+.+++.|.+|++|......++. .+...-.++..|+.+|.++.|-.+.++++++ |+.|.+||.-
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF 812 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEI------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF 812 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCcc------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence 4667889999999999665433221 1223445678999999999999988888776 7899999987
Q ss_pred CCeEEEEEc-----cCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEE-----ecCCCCeEEEEEecCCCe
Q 004594 586 SFTVKSTLE-----EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKED 654 (743)
Q Consensus 586 t~~~~~~l~-----~H~~~V~~l~fspd~~~L-~Sgs~Dg~V~vWDl~~~~~~l~~l-----~gh~~~V~sl~fspdg~~ 654 (743)
-++.+..+. +..+.|.|+. +-+...+ +.|+...+|+++|.+..+. ...+ .+....+.+++..+.|.+
T Consensus 813 igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVcna~~Pna~~R~iaVa~~GN~ 890 (1034)
T KOG4190|consen 813 IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKVCNAPGPNALTRAIAVADKGNK 890 (1034)
T ss_pred ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEeccCCCCchheeEEEeccCcch
Confidence 666554322 2223455543 1133344 4446799999999998654 3333 234466889999999875
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeccCc--ee-eecCCCEEEEEecCCeEEE-EecccceEEEeecCC----------
Q 004594 655 LLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MP-IILKGCFILNSIFNCYLLL-HRIFLNLLSVSEWCN---------- 720 (743)
Q Consensus 655 llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~--i~-~s~~g~~L~sgs~Dg~v~v-h~~~v~~l~vs~~~~---------- 720 (743)
+ +.+-..|+|.+.|.++|+.+..++...+ +. ..|...+++....|.++.+ |-......-....++
T Consensus 891 l-Aa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsv 969 (1034)
T KOG4190|consen 891 L-AAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSV 969 (1034)
T ss_pred h-hHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhcc
Confidence 4 4666689999999999998877764322 11 2255556677777777777 443322222211110
Q ss_pred CCEEEEEeCCCcEEEeCC
Q 004594 721 PDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 721 ~~~laSgs~DG~V~iWd~ 738 (743)
+--+++.-....+.+|.+
T Consensus 970 gpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 970 GPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CceeEEeccCcEEEEEec
Confidence 224556555666777754
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-06 Score=93.89 Aligned_cols=218 Identities=10% Similarity=0.099 Sum_probs=147.1
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++++|+.||.+++.....+.....+.+ .....+...-.++.||...|.-+.|+.....|.|...+|.|.||-+-.
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred CeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence 6999999999999996654432211111 122344566678999999999999999888999999999999998866
Q ss_pred CeEEEEE--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 004594 587 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (743)
Q Consensus 587 ~~~~~~l--~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~ 664 (743)
+.-...+ ...++.|.+++|+.+|..|+..-.||.|.|=.++..+.--+.+++. ....+.|++|.+.+| .+-..|.
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~L-f~~ange 179 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQAL-FKKANGE 179 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHH-hhhcCCc
Confidence 5433222 2245679999999999999999999999998887544322333332 245789999976544 5667899
Q ss_pred EEEEECCCC-------eEEEEEecc----------------CceeeecCCCEEEEEecCCeEEEE-----------eccc
Q 004594 665 IRYWSINNG-------SCAGVFKVC----------------NLMPIILKGCFILNSIFNCYLLLH-----------RIFL 710 (743)
Q Consensus 665 IrvWDl~tg-------~~v~~~~~~----------------~~i~~s~~g~~L~sgs~Dg~v~vh-----------~~~v 710 (743)
+++||.... .|.....+. +...+-|+-..++++..+|.+.+. +...
T Consensus 180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 999997532 232111111 112233677889999888887772 2223
Q ss_pred ceEEEeecCCCCEEEEEeCCC
Q 004594 711 NLLSVSEWCNPDEISTSSWKD 731 (743)
Q Consensus 711 ~~l~vs~~~~~~~laSgs~DG 731 (743)
......+..++..++.+|.|.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred EeecceecCCCcEEEEccCcc
Confidence 333334444466666666553
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-07 Score=93.53 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=110.6
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----CeeEE
Q 004594 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 634 (743)
Q Consensus 561 i~fsp--dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~----~~~l~ 634 (743)
|+|+- .|-. ++.+.+-.|-+-|++++-. ..|. .++.|.++.|+-.+++++.|+..|.|.++|++.+ ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 46653 2323 4455577788888887543 2333 5678999999998999999999999999999976 45566
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE---EEEEeccCc------eeeecCCCEEEEEecCCeEEE
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKVCNL------MPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 635 ~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~---v~~~~~~~~------i~~s~~g~~L~sgs~Dg~v~v 705 (743)
.+. |.+.|+++..-......|.+.+.+|+|++||+|.-+| +..+.+|.. +.+.+....|++++.|+..+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 665 8899999876652233555778899999999998777 889998743 335577889999999999999
Q ss_pred Eecc
Q 004594 706 HRIF 709 (743)
Q Consensus 706 h~~~ 709 (743)
|...
T Consensus 373 Wsl~ 376 (425)
T KOG2695|consen 373 WSLD 376 (425)
T ss_pred Eecc
Confidence 9866
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00029 Score=75.07 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=101.3
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEE--EEccCCCC----------EEEEEEcCCCCEEEEEeC-CCeEEE
Q 004594 559 ESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSA-DRTVRV 623 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~-Dg~V~IWd~~t-~~~~~--~l~~H~~~----------V~~l~fspd~~~L~Sgs~-Dg~V~v 623 (743)
+-++++++|++|+++.. -+.|.++-+.+ |.... -+..|.+. +.+..|.|++++|++++. -..|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 67899999999999986 57899998865 33221 22345555 889999999999988864 567999
Q ss_pred EECCCCCeeEE--EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-e---EEEEEec----------cCceee
Q 004594 624 WDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S---CAGVFKV----------CNLMPI 687 (743)
Q Consensus 624 WDl~~~~~~l~--~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~---~v~~~~~----------~~~i~~ 687 (743)
|++..+..... ...........|.|||+++...+.+-.+++|-+|..... . ++..+.. ...+.+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 99986553211 111334567899999999988888889999999999873 2 2222221 134778
Q ss_pred ecCCCEEEEEe
Q 004594 688 ILKGCFILNSI 698 (743)
Q Consensus 688 s~~g~~L~sgs 698 (743)
+++|+||.++.
T Consensus 252 s~dGrFLYasN 262 (346)
T COG2706 252 SPDGRFLYASN 262 (346)
T ss_pred CCCCCEEEEec
Confidence 89999998874
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=107.11 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=142.6
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~-~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
++.|-..|.++.-+|...+.+||+.||.|++|....+..+.++. .-...|+.++|+..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 34455678888889999999999999999999988887776664 224889999999999999999999999999988
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEE---eCCCcEEEEECCC---CeEEEEEecc----CceeeecCCCEEEEEec
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINN---GSCAGVFKVC----NLMPIILKGCFILNSIF 699 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSg---s~Dg~IrvWDl~t---g~~v~~~~~~----~~i~~s~~g~~L~sgs~ 699 (743)
..++.....|....+++.|-.. +++++ +.++.+.+||... ..+++ ++| +.+.+.|....|++|+.
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred CcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCC
Confidence 3347788889999999999863 55554 3578899999753 23444 333 45778899999999999
Q ss_pred CCeEEEEecccceEE--EeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 700 NCYLLLHRIFLNLLS--VSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 700 Dg~v~vh~~~v~~l~--vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
+|.|++|+..-..+. |.......++++|+..|.++||+-.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEcc
Confidence 999999987543221 0011137799999999999999743
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-05 Score=88.67 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=87.8
Q ss_pred CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCC
Q 004594 554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN 628 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSg--s~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vWDl~~ 628 (743)
..++|.++.|+|+++-|+++ -.=-+|.|||++ ++++..+ -.++-.++-|+|.|++|+.++. -|.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 36899999999999866554 345679999986 5665555 3566789999999999988887 58899999998
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEE
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCA 676 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IrvWDl~tg~~v 676 (743)
..++..+.... .+-++|+|||++++.+... |..++||+.. |..+
T Consensus 346 -~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 346 -RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred -hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 44577776443 4557999999987754443 7789999976 4444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=63.82 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.2
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
+.+..+++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-05 Score=83.34 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeC--CCeEEEEECCCC
Q 004594 557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSA--DRTVRVWDTENP 629 (743)
Q Consensus 557 ~V~~i~fspdg~~-LaSgs~D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~--Dg~V~vWDl~~~ 629 (743)
.+..-.|+|||+. ++..+.+ ..|.++|+.+++..... ...+.+.+.+|+||++.|+ +.+. +..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999984 6654444 45888899887765443 3556677889999998765 4443 356888888765
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEe-ccCceeeecCCCEEEEEecC
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-VCNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~-~~~~i~~s~~g~~L~sgs~D 700 (743)
. ...+..+........|+|||..++++....+ .|.++|+.+++...... +.....++|+|++|+..+..
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcC
Confidence 4 3445444443456689999998887776555 57778888877643332 32345799999998776543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=63.33 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
++++.++.+|...|++|+|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=95.73 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=124.4
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~ 585 (743)
..++++++.|-.|..|+..... .++.....-......|.|+-...-+.+.+..+-|+|||.+
T Consensus 127 pdVlatcsvdt~vh~wd~rSp~------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 127 PDVLATCSVDTYVHAWDMRSPH------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred CcceeeccccccceeeeccCCC------------------cceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 4688999999999999664432 2222333323345678898744445556678889999998
Q ss_pred C-CeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE--EEeC
Q 004594 586 S-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC--SCDN 661 (743)
Q Consensus 586 t-~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~lla--Sgs~ 661 (743)
. +.++..+++|...|..++|+. ....+.+++.|++|+.||..+....-........+|..-+|-|-|+-+++ ..+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G- 267 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG- 267 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC-
Confidence 6 457788999999999999976 35678899999999999987644322222234456777777776553332 222
Q ss_pred CCcEEEEECC---------C-CeEEEEEeccCceeee--------cCCC------EEEEEecCCeEEEEecccce
Q 004594 662 NSEIRYWSIN---------N-GSCAGVFKVCNLMPII--------LKGC------FILNSIFNCYLLLHRIFLNL 712 (743)
Q Consensus 662 Dg~IrvWDl~---------t-g~~v~~~~~~~~i~~s--------~~g~------~L~sgs~Dg~v~vh~~~v~~ 712 (743)
+..|.+++.+ + ...++.|.+|+..... .+|. -|++.+.|.++++|.+....
T Consensus 268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 2244444433 2 3578889888652211 1222 38899999999999876543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-05 Score=75.66 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEE-EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~--~~~~-~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
+..+++++|++++++.++...|..|.++.. ..+. .....++.=.+..|+.....+|++..||++.|||++....+-.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 788999999999999999999999988652 2333 2223344557889999889999999999999999987554322
Q ss_pred ----EEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCeEEEEEecc
Q 004594 635 ----TFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 635 ----~l~gh~~~V~sl~fspdg~~-llaSgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
+-..|.+.+..+.|++.|.. ||.-.-.-+.++|-|+|+++-...+...
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 22358899999999986543 3333334578999999998766555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00015 Score=90.56 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=106.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccC---------------CCCEEEEEEcCCCCEE-EEEeCCCe
Q 004594 558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT 620 (743)
Q Consensus 558 V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H---------------~~~V~~l~fspd~~~L-~Sgs~Dg~ 620 (743)
-.+|+|+| ++.++++.+.++.|++||..++... .+.+. -.....|+|+|++..| ++-..++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35799999 5667777778899999998876543 22211 1234579999998855 45556899
Q ss_pred EEEEECCCCCeeEEE------------EecC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 004594 621 VRVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 621 V~vWDl~~~~~~l~~------------l~gh--------~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
|++||+.++...+.. +..+ .....+++|+++|. ++++...++.|++||..++.+.....
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999875532111 0000 11346889999986 77788889999999999877654332
Q ss_pred -----------------ccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 681 -----------------VCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 681 -----------------~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
....++++++|..+++-+.+++|++++..-
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 123478889999888889999999987643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=88.40 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=106.6
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEccC-----CCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004594 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR 622 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~---~~~~l~~H-----~~~V~~l~fspd-~~~L~Sgs~Dg~V~ 622 (743)
..|..-|.+|.|+.|...++++. |=.|.+|+++-.. .+.-++.| +..|++..|+|. ...+.-++..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 57888899999999988887765 7789999986422 12223333 456889999995 56677778899999
Q ss_pred EEECCCCCeeE---------------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEeccC---
Q 004594 623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKVCN--- 683 (743)
Q Consensus 623 vWDl~~~~~~l---------------~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~~~--- 683 (743)
+-|++....|. ..|.+-.+.|..+.|+++|++++ +-+ =-+|+|||++.. .|+.++..|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechHHHHH
Confidence 99998543321 11233446788999999987544 544 358999999864 5777775431
Q ss_pred ----------------ceeeecCCCEEEEEecCCeEEE
Q 004594 684 ----------------LMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 684 ----------------~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
.+.|+-+...+++|+.....-+
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 1557777778888877666555
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=82.68 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCC--eEEEEECC
Q 004594 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADR--TVRVWDTE 627 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaS-gs~D--g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg--~V~vWDl~ 627 (743)
..+.+.+..|+|||+.|+. .+.+ ..|.++|+.+++.. .+..+........|+|||+.|+-.+ ..+ .|.++|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4455667889999986654 3334 45777788777643 4444444344568999998775544 334 57777887
Q ss_pred CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeEEEEEec--cCceeeecCCCEEEEE
Q 004594 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFILNS 697 (743)
Q Consensus 628 ~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D--------g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L~sg 697 (743)
++.....++.+. ....|+|+|+.+++++..+ ..|.+.|+.++........ .....|+|+|+.|+..
T Consensus 310 ~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 310 SGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred CCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEE
Confidence 765422222222 1248999999887776543 3688889888764322222 2346799999988766
Q ss_pred ecC
Q 004594 698 IFN 700 (743)
Q Consensus 698 s~D 700 (743)
+.+
T Consensus 386 ~~~ 388 (419)
T PRK04043 386 KYL 388 (419)
T ss_pred Ecc
Confidence 543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=90.27 Aligned_cols=143 Identities=10% Similarity=0.131 Sum_probs=103.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
++++++-|+++|.|+++..... . .+...|+.. ..+|.+++||+.||+|.|..+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 3589999999999999844222 1 112233322 458999999999999999998
Q ss_pred CCCeEEEEEccCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCCCeEEE
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fspd-----~~~L~Sgs~Dg~V~vWDl~~~--~~~l~~l~gh~~~V~sl~fspdg~~lla 657 (743)
.+.+....+. ...++.+|+++|+ .+.+++|+..| +.++.-+-- +..+ .+....+.|.++.|..+ ++|
T Consensus 101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIA 174 (846)
T KOG2066|consen 101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIA 174 (846)
T ss_pred cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEE
Confidence 8877766554 3567999999997 56899999888 777653211 1112 35556789999999843 777
Q ss_pred EEeCCCcEEEEECCCCeEEEEEec
Q 004594 658 SCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
-++.+| |+|||+.+++.+..+..
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred EecCCC-cEEEeccccceeeccCC
Confidence 777565 99999999887766654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-05 Score=82.26 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=111.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs~Dg-~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~ 631 (743)
+|.+.|.-..+..+++-++.|..|| .+-|||.++++.. .+.+.-+.|.++..+++|++++.+.....|-+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 6777898889988888999999999 8999999987754 4556778899999999999999999999999999999774
Q ss_pred eEEEEecCCCCeEEEEEecCCCeEEEEEeCC----CcEEEEECCCCeEEEEEec--c-CceeeecCCCEEEEEe
Q 004594 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKV--C-NLMPIILKGCFILNSI 698 (743)
Q Consensus 632 ~l~~l~gh~~~V~sl~fspdg~~llaSgs~D----g~IrvWDl~tg~~v~~~~~--~-~~i~~s~~g~~L~sgs 698 (743)
...-+...+-|+.++|||+++++.. +--+ ..|+++|+.+++....-.. + -+.+|.|+++||.--+
T Consensus 436 -~~idkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 436 -RLIDKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -eEecccccceeEEEEEcCCceeEEE-ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2333345578999999999875543 3333 4699999998876544332 1 2356889999866443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.3e-06 Score=87.35 Aligned_cols=146 Identities=12% Similarity=0.143 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEEccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD 630 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~----~~~~l~~H~~~V~~l~fspd~~~L~Sgs---~Dg~V~vWDl~~~~ 630 (743)
+..+.+++++++||++..++...+++++... ++..... ...-+++.|..+...+..+. ....+.+|.+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 4456678899999999888887777765432 2222211 22234444544444444444 344555555554
Q ss_pred eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-ccCc----eeeecCCCEEEEEecCCeEEE
Q 004594 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNL----MPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 631 ~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~-~~~~----i~~s~~g~~L~sgs~Dg~v~v 705 (743)
.+...+.||.+.++.|+|+||+. +++++..|..|||-....--.+..|- +|.. +++ .++..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl-~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL-TDNYLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeee-ccCceeeecCCCCcEEE
Confidence 33566778999999999999986 66699999999996654332222222 2221 111 22333555555666665
Q ss_pred Eec
Q 004594 706 HRI 708 (743)
Q Consensus 706 h~~ 708 (743)
|+.
T Consensus 220 Wd~ 222 (390)
T KOG3914|consen 220 WDI 222 (390)
T ss_pred Eec
Confidence 554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00048 Score=76.45 Aligned_cols=166 Identities=6% Similarity=-0.111 Sum_probs=104.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEE-----EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-CC
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-----DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HS 640 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~-----~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g-h~ 640 (743)
+..++.++.|+.|..||.++++.+..+......+. +..+ .+..++.+..++.|..+|++++.. +..... ..
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-LWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeeccccC
Confidence 45677778899999999999988766654332211 1111 134678888899999999988764 332211 00
Q ss_pred -C--C------e-EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 641 -T--T------V-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 641 -~--~------V-~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
+ . + .+..+. +. .++.++.++.++.||+++|+.+..............+..++.++.||.+...+...
T Consensus 222 ~g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCCchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCC
Confidence 0 0 0 111122 23 44466779999999999998877665433333445677888888888888755433
Q ss_pred ceEEEee-----------cCCCCEEEEEeCCCcEEEeCC
Q 004594 711 NLLSVSE-----------WCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 ~~l~vs~-----------~~~~~~laSgs~DG~V~iWd~ 738 (743)
....|.. .-.++.|++++.||.|+++|.
T Consensus 299 G~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEEC
Confidence 2222211 012568899999999999874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=79.94 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=84.6
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC----eE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TV 621 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg----~V 621 (743)
.+++.+...-+.|.++..+++|++++.+.+...+.+.|++++.....-+...+-|+.+.|||++++||-+--+| .|
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 35566677778899999999999999999889999999999987665556678899999999999999887766 48
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~lla 657 (743)
+++|+..++. .......+.=.+-+|.|+++++..
T Consensus 472 klydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 472 KLYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCCCeE--EEecCCcccccCcccCCCCcEEEE
Confidence 9999987553 222223333455677777776543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=89.39 Aligned_cols=182 Identities=16% Similarity=0.087 Sum_probs=129.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~-Dg~V~IW 582 (743)
..+++.+++.|+.++.|.- +. .....+..++.|-+.|.+++.+-+|.+++|.+. |+.++++
T Consensus 19 ka~fiiqASlDGh~KFWkK-----------------s~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKK-----------------SRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred hhheEEeeecchhhhhcCC-----------------CCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 3479999999999999922 22 234567788899999999999999999999888 9999999
Q ss_pred ECCCCeEEEEEc--cCCCCEEEEEEcCC-C-CEEE-EEeCCCeEEEEECCCCCeeEEE-EecCCCCeEEEEEecCCCeEE
Q 004594 583 CTESFTVKSTLE--EHTQWITDVRFSPS-L-SRLA-TSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 583 d~~t~~~~~~l~--~H~~~V~~l~fspd-~-~~L~-Sgs~Dg~V~vWDl~~~~~~l~~-l~gh~~~V~sl~fspdg~~ll 656 (743)
|+++...+..++ .-.+.+.++ .++. . ..|+ +.-.++.|.|+|-....+.... -.-|..+|..+.+.+.+. .+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence 998765543322 223333222 2332 1 1333 3345899999998765533333 345899999999999987 44
Q ss_pred EEEeCCCcEEEEECCC------CeEEEEEec-------------cCceeeecCCCEEEEEecCCeEEE
Q 004594 657 CSCDNNSEIRYWSINN------GSCAGVFKV-------------CNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 657 aSgs~Dg~IrvWDl~t------g~~v~~~~~-------------~~~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
+|....|.|..|.... .+....++. ..++.|+|+|..+.+-..|..|++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 4888889999998872 212222221 245889999999999999999998
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.6e-06 Score=83.56 Aligned_cols=171 Identities=11% Similarity=0.126 Sum_probs=106.4
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEc-cCCCCEEEEEEcCCCCEEEEEeC-----C
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLE-EHTQWITDVRFSPSLSRLATSSA-----D 618 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~-~~~l~-~H~~~V~~l~fspd~~~L~Sgs~-----D 618 (743)
...+++.-|+++-.+-+.+-.++.++++..||.+.+++.+.... .+.+. .|.+ -.+.++...++.|.++.. -
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeec
Confidence 44555555665554545555677899999999999999875111 11111 1111 112222223344433321 3
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE-EEEecc----Cceeeec-CCC
Q 004594 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKVC----NLMPIIL-KGC 692 (743)
Q Consensus 619 g~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v-~~~~~~----~~i~~s~-~g~ 692 (743)
+..+.|+++..+....... ....|++++-||.-.+++++|+.||.|-+||.++.... ..++.| ..+.|+| ++.
T Consensus 159 d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred cceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence 3456676664332111111 22349999999998899999999999999999987433 223333 2366776 577
Q ss_pred EEEEEecCCeEEEEecccceEEEeec
Q 004594 693 FILNSIFNCYLLLHRIFLNLLSVSEW 718 (743)
Q Consensus 693 ~L~sgs~Dg~v~vh~~~v~~l~vs~~ 718 (743)
.|+++++||.+--|+.....++++..
T Consensus 238 ~Lft~sedGslw~wdas~~~l~i~~~ 263 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDASTTFLSISNQ 263 (319)
T ss_pred heeEecCCCcEEEEcCCCceEEecCc
Confidence 89999999999999988877776544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.001 Score=68.34 Aligned_cols=170 Identities=9% Similarity=-0.025 Sum_probs=104.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCC---C
Q 004594 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS---T 641 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~-l~gh~---~ 641 (743)
++..+++++.++.|..||..+++.+..+.. ...+.... ...+..++.++.|+.|+.+|+.+++. +.. ..... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-eeeeccccccccc
Confidence 566788888999999999999998877764 22221111 12356677777889999999999876 444 23221 1
Q ss_pred CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc-------------eeeecCCCEEEEEecCCe-EEE--
Q 004594 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-------------MPIILKGCFILNSIFNCY-LLL-- 705 (743)
Q Consensus 642 ~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-------------i~~s~~g~~L~sgs~Dg~-v~v-- 705 (743)
..........+. .++.+..++.|..+|+++|+.+..+..... ......+..++.++.++. +.+
T Consensus 112 ~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDL 190 (238)
T ss_dssp TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEET
T ss_pred cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEEC
Confidence 112222222244 444566689999999999999888765321 111122236677776663 444
Q ss_pred ------EecccceEEEeecCCCCEEEEEeCCCcEEEeCCC
Q 004594 706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 706 ------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~ 739 (743)
|..............+..|+.++.++.|..||-.
T Consensus 191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 191 ATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp TTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred CCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 3222222221123346788888899999999853
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0025 Score=68.09 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=119.0
Q ss_pred ccCCCCEEEEeeCC-CcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 004594 502 LTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKA 579 (743)
Q Consensus 502 l~d~~~~l~sGs~D-~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~-Dg~V 579 (743)
+...+++|.++.+. +.|.++-..++.........+.....+. . .+.- +..+.+..|.|++++|++.+- --+|
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p--~-~rQ~---~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP--H-ERQE---SPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC--C-cccc---CCccceeeeCCCCCEEEEeecCCceE
Confidence 45566788877753 5666664433321111111111111110 0 0111 112788999999999988763 2359
Q ss_pred EEEECCCCeEEEEEc---cCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecC---------CCCeEEE
Q 004594 580 VLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH---------STTVMSL 646 (743)
Q Consensus 580 ~IWd~~t~~~~~~l~---~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~~l~~l~gh---------~~~V~sl 646 (743)
.+|+++.++....-. .-...-+.|.|||++++.+..+. +++|-+|........+..+..+ .....+|
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 999998765432211 23455789999999998866655 9999999998743223333322 2457788
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEec-------cCceeeecCCCEEEEEecCC
Q 004594 647 DFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKV-------CNLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 647 ~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~~~-------~~~i~~s~~g~~L~sgs~Dg 701 (743)
..+++|++|.+|--....|.+|.+... ..+..+.. .+.+.+.+.|++|++...++
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 999999977766555557888877642 22222221 24577889999999988764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=89.13 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=114.1
Q ss_pred eEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---------
Q 004594 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--------- 617 (743)
Q Consensus 547 ~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~--------- 617 (743)
+.+...-..+.|+-++. +++++++|...|+|.+-|.++.+.+.++..|++.|.++.. .|+.|+||+.
T Consensus 169 e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~ 244 (1118)
T KOG1275|consen 169 ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAM 244 (1118)
T ss_pred eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccc
Confidence 33333333434655555 6789999999999999999999999999999999998766 4789999876
Q ss_pred CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE---CCCCe-EEEEEe----ccCceeeec
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INNGS-CAGVFK----VCNLMPIIL 689 (743)
Q Consensus 618 Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWD---l~tg~-~v~~~~----~~~~i~~s~ 689 (743)
|..|+|||+|.-+. +.-+.-+.+ ..-+.|+|.-...+|.++..|.+.+-| +.+.. -+..+. +...+.+++
T Consensus 245 D~FvkVYDLRmmra-l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRA-LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred cchhhhhhhhhhhc-cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC
Confidence 67799999997543 333333333 255789998777777888889999998 33321 111111 124577889
Q ss_pred CCCEEEEEecCCeEEEEec
Q 004594 690 KGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 690 ~g~~L~sgs~Dg~v~vh~~ 708 (743)
.|..++.|..+|.|.+|..
T Consensus 323 n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCceEEEecccCcEeeecC
Confidence 9999999999999999873
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.009 Score=62.15 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=101.0
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-----CCCCEEEEEEcCCCCEEEEEeCC--------CeEEE
Q 004594 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (743)
Q Consensus 558 V~~i~fs-pdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~-----H~~~V~~l~fspd~~~L~Sgs~D--------g~V~v 623 (743)
...+++. ++++ |+.+..++ +.++|..+++....+.. ......++++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 5655 44555444 56669888765444432 34568899999999988877654 55777
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE----EEEE---ec----cCceeeecCCC
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVF---KV----CNLMPIILKGC 692 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~----v~~~---~~----~~~i~~s~~g~ 692 (743)
++.. +. +..+...-...+.|+|+|+++.++++-+..+.|..|++..... ...+ .. ...+++..+|+
T Consensus 120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 7776 33 3333333566899999999998888888899999999863221 1222 22 24588889999
Q ss_pred EEEEEecCCeEEEEecccceEE
Q 004594 693 FILNSIFNCYLLLHRIFLNLLS 714 (743)
Q Consensus 693 ~L~sgs~Dg~v~vh~~~v~~l~ 714 (743)
+.++....+.|.+.+.....+.
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~ 218 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLR 218 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEE
T ss_pred EEEEEcCCCEEEEECCCccEEE
Confidence 8888777888888776665544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0017 Score=72.05 Aligned_cols=166 Identities=8% Similarity=0.007 Sum_probs=102.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-
Q 004594 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 643 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~-l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V- 643 (743)
++..++.++.|+.|..+|..+++.+...... +.+.+ ..+ .+..++.++.++.|+.||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 4677888889999999999999887655432 22222 111 245777788899999999998764 44443222111
Q ss_pred ----EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc-----------e--eeecCCCEEEEEecCCeEEEE
Q 004594 644 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----------M--PIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 644 ----~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----------i--~~s~~g~~L~sgs~Dg~v~vh 706 (743)
.+..+. + . .++.+..++.|..+|+++|+.+........ + .....+..++.++.++.+..+
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111222 2 2 455777789999999999987655432100 0 111245677778888888876
Q ss_pred ecccceEEEeec--------CCCCEEEEEeCCCcEEEeCC
Q 004594 707 RIFLNLLSVSEW--------CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 707 ~~~v~~l~vs~~--------~~~~~laSgs~DG~V~iWd~ 738 (743)
+.......|... ..++.|+.++.||.|+.+|.
T Consensus 257 d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 257 DLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred ECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 653322222211 12567888888888887764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00033 Score=79.03 Aligned_cols=126 Identities=12% Similarity=0.144 Sum_probs=85.2
Q ss_pred eeeeEEEeeCCCCCeEEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeE--EEE-EccCCCCEEEEEEcCCCCE
Q 004594 544 TFTEFQLIPASTSKVESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTV--KST-LEEHTQWITDVRFSPSLSR 611 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fsp-dg~~LaSg----s~Dg~V----~IWd~~t~~~--~~~-l~~H~~~V~~l~fspd~~~ 611 (743)
..+.+..++.-.++ .++.||- +...|.|. +.+|.+ ++|++...+. +.. --.....|.|++++|+.+.
T Consensus 195 klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 195 KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK 273 (545)
T ss_pred cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce
Confidence 34444444444443 5777876 34444433 334443 3555543322 111 1246778999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 004594 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 612 L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~ 674 (743)
|+.|+.||.|.+||...+. ..+..+.-.++.++|||+|. +++.|+.-|.|.+||+.-..
T Consensus 274 LvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 9999999999999987643 33334556688999999987 67788889999999987543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=82.82 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++|..++|+..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6679999999899999999999999988877666677899999999999999999999999999999865
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00029 Score=79.45 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
.....|.|++++|+...|+.|+.||.|++||...+-. .+..+.-.++.++|||+|..|++|+..|.|.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4667899999999999999999999999999876533 23345566889999999999999999999999998643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.3e-05 Score=89.76 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=111.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC---------C
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------D 576 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~---------D 576 (743)
.+++.+|...|+|.+- +...++.++++..|++.|.++.. .|++|++||. |
T Consensus 187 nr~lf~G~t~G~V~Lr-------------------D~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLR-------------------DPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD 245 (1118)
T ss_pred CcEEEeecccceEEee-------------------cCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc
Confidence 3788888888888887 44556788999999999988776 6889999875 6
Q ss_pred CcEEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEE---CCCCCeeEEEEecCCCCeEEEEEecCC
Q 004594 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD---TENPDYSLRTFTGHSTTVMSLDFHPSK 652 (743)
Q Consensus 577 g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~vWD---l~~~~~~l~~l~gh~~~V~sl~fspdg 652 (743)
..|+|||++..+.+.-+.-|.++ .-++|+|. ...+++++..|.+.+-| +.++...+.-+....+.+..++++++|
T Consensus 246 ~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 246 PFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG 324 (1118)
T ss_pred chhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC
Confidence 78999999988776666555554 56789996 56788888999999999 444433334444445669999999997
Q ss_pred CeEEEEEeCCCcEEEEEC
Q 004594 653 EDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 653 ~~llaSgs~Dg~IrvWDl 670 (743)
. .++.+..+|.|.+|--
T Consensus 325 ~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 325 D-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred c-eEEEecccCcEeeecC
Confidence 6 7889999999999973
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.1e-05 Score=79.87 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=91.8
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~-~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~v 623 (743)
+....+.+|...|.+++|+|..+ ++..++.+++|+|.|+++..++..+..| ..+++++|+-+ .++|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 34456778889999999999777 8899999999999999999888888887 78999999886 567888889999999
Q ss_pred EECCCCCeeEEEEec--CCCCeEEEEE------ecCCCeEEEEEeCCCcEEEEECC
Q 004594 624 WDTENPDYSLRTFTG--HSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 624 WDl~~~~~~l~~l~g--h~~~V~sl~f------spdg~~llaSgs~Dg~IrvWDl~ 671 (743)
||++..+.++..+.+ ...+|..|+. .+.|. +++..+.+ +.+|.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIV 315 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhh
Confidence 999988766655554 2234544432 22333 55444433 5677654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00057 Score=78.56 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=128.3
Q ss_pred ceeeeEEEeeCCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC---
Q 004594 543 FTFTEFQLIPASTSKVESCHFSPD------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 607 (743)
Q Consensus 543 ~~~~~~~~l~~H~~~V~~i~fspd------------g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp--- 607 (743)
.....+..++-|...|+.|.|.|. .-+||++...|.|.|||...+..+..+..|...|-+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 345677888899999999999772 12578888899999999999888888999999999999976
Q ss_pred CC-CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-------CeEEEEE
Q 004594 608 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 679 (743)
Q Consensus 608 d~-~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t-------g~~v~~~ 679 (743)
+. ..|+.-....+|.+|+..++.. +..+........++.++|-...-|+.-+..|.|-+-+.-. |+....-
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4566666788999999999876 5555444455667888885433333333355555554321 1111111
Q ss_pred ecc-----------------------------CceeeecCCCEEEEEecCCeEEE--------------EecccceEEEe
Q 004594 680 KVC-----------------------------NLMPIILKGCFILNSIFNCYLLL--------------HRIFLNLLSVS 716 (743)
Q Consensus 680 ~~~-----------------------------~~i~~s~~g~~L~sgs~Dg~v~v--------------h~~~v~~l~vs 716 (743)
..| ..++|+|.-+.++.-....-+.+ -+.....+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 110 01334444443333333322222 23334466777
Q ss_pred ecCCCCEEEEEeCCCcEEEeCCCc
Q 004594 717 EWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 717 ~~~~~~~laSgs~DG~V~iWd~~~ 740 (743)
+++....++++=.||.+-+|....
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 777678999999999999995543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0076 Score=66.15 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=54.8
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEccC-------CCCEEEEEEcCCCCEEEEEe-C-CCeEEE
Q 004594 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSS-A-DRTVRV 623 (743)
Q Consensus 563 fspdg~~LaSgs~----------Dg~V~IWd~~t~~~~~~l~~H-------~~~V~~l~fspd~~~L~Sgs-~-Dg~V~v 623 (743)
++|||+.|+++.. +..|.|||+.+.+.+..+.-- ......++++|||++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998887765 788999999999998887632 12234788999999998776 3 789999
Q ss_pred EECCCCC
Q 004594 624 WDTENPD 630 (743)
Q Consensus 624 WDl~~~~ 630 (743)
.|+.+++
T Consensus 133 vD~~~~k 139 (352)
T TIGR02658 133 VDLEGKA 139 (352)
T ss_pred EECCCCc
Confidence 9998754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0059 Score=63.56 Aligned_cols=180 Identities=13% Similarity=0.029 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc-------CCCCEEEEEEcCC------CCEEEEEeCCCeEEEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW 624 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~-------H~~~V~~l~fspd------~~~L~Sgs~Dg~V~vW 624 (743)
=+-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|.+- ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999999999999999999987533 333322 2355677777542 1245666678888877
Q ss_pred ECCCC----CeeEEE--Ee-cCCCCeEEEEEecCCCeEEEEEeCCCc----------EEEEECCCCeEEEEE--eccCce
Q 004594 625 DTENP----DYSLRT--FT-GHSTTVMSLDFHPSKEDLLCSCDNNSE----------IRYWSINNGSCAGVF--KVCNLM 685 (743)
Q Consensus 625 Dl~~~----~~~l~~--l~-gh~~~V~sl~fspdg~~llaSgs~Dg~----------IrvWDl~tg~~v~~~--~~~~~i 685 (743)
-+..+ -..-++ |. .+...|.++.|+|....+++.|..... +..|-+-++.+-... .....+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 65321 111222 22 246789999999997766665554432 344444333221110 000111
Q ss_pred eeecCCCEEEEEecCCeEEEE----ecccceEEEeecCCCCEEEEEeCCCcEEEeCCCcc
Q 004594 686 PIILKGCFILNSIFNCYLLLH----RIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 686 ~~s~~g~~L~sgs~Dg~v~vh----~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~~~l 741 (743)
...+....+.- -..+++. .....++.++..+++..|++...+|.|.+|+-..|
T Consensus 205 ~~~~~~~~~~~---~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 205 TASSKRRGLLR---IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccccccceee---ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11110000000 0011111 11223445555666889999999999999976654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=78.30 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=80.0
Q ss_pred EEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 004594 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (743)
Q Consensus 579 V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~-~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~lla 657 (743)
|++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..| ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66666666666667778889999999999755 78889999999999999844 57788877 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCe
Q 004594 658 SCDNNSEIRYWSINNGS 674 (743)
Q Consensus 658 Sgs~Dg~IrvWDl~tg~ 674 (743)
+|...|.|.|||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999999653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.5e-05 Score=84.17 Aligned_cols=116 Identities=17% Similarity=0.286 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~---------------~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg 619 (743)
.....|++|+....+||+|+.||.++|..+.+.. .-.+++||.+.|.-+.|+.....|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3458899999999999999999999999775411 1236789999999999999888999999999
Q ss_pred eEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 620 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l-~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
.|.||-+-++..+-.-+ ....+.|.+++|+.+|.. ++..-.||.|.|=.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVD 145 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeec
Confidence 99999998776532222 234567899999999874 3345556665544333
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00098 Score=74.22 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=111.6
Q ss_pred cccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEE
Q 004594 533 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612 (743)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L 612 (743)
...+|+...|...+.+.++++....-.-..||.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.+.+|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 3455666666544555555444433445789999999988776 468899876543332111122345555555554443
Q ss_pred EEEeC--C-------------------------------------------------------CeEEEEECCCCCeeEEE
Q 004594 613 ATSSA--D-------------------------------------------------------RTVRVWDTENPDYSLRT 635 (743)
Q Consensus 613 ~Sgs~--D-------------------------------------------------------g~V~vWDl~~~~~~l~~ 635 (743)
|-=.. + ..+-|+.++....++..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 32110 0 01222222222222222
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCC-C---eEEEEEe--ccCceeeecCCCEEEEEec---CCeEE
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINN-G---SCAGVFK--VCNLMPIILKGCFILNSIF---NCYLL 704 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~D--g~IrvWDl~t-g---~~v~~~~--~~~~i~~s~~g~~L~sgs~---Dg~v~ 704 (743)
.. ....|...+|.|.|..+.+-.+.+ .+|++|-+++ . +.+..+. ..+.+.++|.|.+++.+.. .|.+.
T Consensus 442 ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 442 VE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred ee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceE
Confidence 21 335677889999988765544433 5699998873 2 2333333 3466889999999988754 56677
Q ss_pred EEeccc------------ceEEEeecCCCCEEEEEeCCCcEE
Q 004594 705 LHRIFL------------NLLSVSEWCNPDEISTSSWKDSCC 734 (743)
Q Consensus 705 vh~~~v------------~~l~vs~~~~~~~laSgs~DG~V~ 734 (743)
+.+... ....+-+++.+.++++++.-.+.+
T Consensus 521 F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 521 FYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred EEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 655442 112233445588999888655443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=81.93 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD 625 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~------------~~L~Sgs~Dg~V~vWD 625 (743)
-.++.|+|.| +||-|+. ..|.|-|..+.+.+..++-|...|+.|+|.|.. -+|++++..|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899877 6888774 568899999999999999999999999998721 2578888899999999
Q ss_pred CCCCCeeEEEEecCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCeEEEEEeccCc----eeeec-CCCEEEEE
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPIIL-KGCFILNS 697 (743)
Q Consensus 626 l~~~~~~l~~l~gh~~~V~sl~fspd---g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s~-~g~~L~sg 697 (743)
...... +..+..|.++|..++|-+. .+++|++-..-.+|.+|+..+|+....+..... +.+.| +.+.+..-
T Consensus 96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 998654 6778888899999999763 445666666678999999999998877665322 22333 33444444
Q ss_pred ecCCeEEE
Q 004594 698 IFNCYLLL 705 (743)
Q Consensus 698 s~Dg~v~v 705 (743)
+..|.+.+
T Consensus 175 ~s~g~vl~ 182 (1062)
T KOG1912|consen 175 GSKGFVLS 182 (1062)
T ss_pred ccCceEEE
Confidence 44454444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0028 Score=65.11 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=100.4
Q ss_pred CccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCC-CCEEEEEeCCC
Q 004594 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDK 577 (743)
Q Consensus 499 ~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg 577 (743)
...+-....+|+.|+.-+...+|...... ........|...|+-+.=..+ .-.+..++.|.
T Consensus 77 p~s~~~kc~~la~gG~~g~fd~~~~~tn~------------------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndh 138 (344)
T KOG4532|consen 77 PGSFINKCVTLADGGASGQFDLFACNTND------------------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDH 138 (344)
T ss_pred chHhhccccEEEeccccceeeeecccCcc------------------cceeeecccccchhhhhhhcccccceeeccCCc
Confidence 33344556788999888999999554321 011111122221211110011 12466778899
Q ss_pred cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-EE-EEecCCCCeEEEEEecCCCeE
Q 004594 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LR-TFTGHSTTVMSLDFHPSKEDL 655 (743)
Q Consensus 578 ~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~-l~-~l~gh~~~V~sl~fspdg~~l 655 (743)
++++.+++.+.....+.-..-.+.+++++++++++++.+....|..|.+....+. +. .....++.-.+..|+... ..
T Consensus 139 t~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~ 217 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ 217 (344)
T ss_pred ceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence 9999888654332222111123889999999999999999999999998765432 33 233344556778888774 48
Q ss_pred EEEEeCCCcEEEEECCCCeE
Q 004594 656 LCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 656 laSgs~Dg~IrvWDl~tg~~ 675 (743)
+|++..||++.|||+|....
T Consensus 218 FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred EEEEecCCcEEEEEeccccc
Confidence 88999999999999997543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0084 Score=61.44 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=92.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEE-ccCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC
Q 004594 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~~~~l-~~H~---~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~ 641 (743)
++..++.++.|+.|..+|..+++.+..+ .... ...........+..++.+..++.|..+|++++.. +..+.....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCC
Confidence 4556777778889999999999988774 3221 1122222222378888998899999999999775 555554332
Q ss_pred C----------e-EEEEEecCCCeEEEEEeCCCc-EEEEECCCCeEEEEEeccCcee-eecCCCEEEEEecCCeEEEEec
Q 004594 642 T----------V-MSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKVCNLMP-IILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 642 ~----------V-~sl~fspdg~~llaSgs~Dg~-IrvWDl~tg~~v~~~~~~~~i~-~s~~g~~L~sgs~Dg~v~vh~~ 708 (743)
. + ..+.+. ++ .++ .++.++. +.+ |+++++.+.......... ...++..|+.++.++.|.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~-~v~-~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DG-RVY-VSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TT-EEE-EECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred CCCcceeeecccccceEEE-CC-EEE-EEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 2 1 222233 33 444 5555665 555 999998765444223233 5678888888888898888876
Q ss_pred ccceEEE
Q 004594 709 FLNLLSV 715 (743)
Q Consensus 709 ~v~~l~v 715 (743)
.-....|
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 6554444
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0035 Score=68.70 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=78.0
Q ss_pred CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEecC-------
Q 004594 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 639 (743)
Q Consensus 577 g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~----------Dg~V~vWDl~~~~~~l~~l~gh------- 639 (743)
++|.|.|..+.+.+.++..-..+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 789999999999888886433332 24 9999998876655 89999999999775 5555421
Q ss_pred CCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCeEEEEEec
Q 004594 640 STTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 640 ~~~V~sl~fspdg~~llaSg-s~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
......++++|+|+.++++- +.+..|.|+|+.+++.+..+..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 12234789999999888666 3389999999999998887765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0052 Score=75.81 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=95.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEE
Q 004594 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~---D---g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vW 624 (743)
+.+.-..|+|-.||.+||+.+. + ..+|||+-+ |....+.+.-.+--.+++|.|.|.+||+.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4556678999999999998875 2 579999954 6665555544455568899999999998865 4456666
Q ss_pred ECCCCCee-EEEE--ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE--EEEe--cc---CceeeecCCC-E
Q 004594 625 DTENPDYS-LRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--VC---NLMPIILKGC-F 693 (743)
Q Consensus 625 Dl~~~~~~-l~~l--~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v--~~~~--~~---~~i~~s~~g~-~ 693 (743)
.- +|-.. -..+ ......|..|.|++++. +||..-.| .|.+|-..+.... ..+. .. ..+.|++... .
T Consensus 287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR 363 (928)
T ss_pred ec-CCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE
Confidence 53 33221 1122 23456799999999987 56555555 4999998886532 2222 11 2366776433 3
Q ss_pred EEEEecCCeEEE
Q 004594 694 ILNSIFNCYLLL 705 (743)
Q Consensus 694 L~sgs~Dg~v~v 705 (743)
|.....++.+..
T Consensus 364 L~v~t~~g~~~~ 375 (928)
T PF04762_consen 364 LHVLTSNGQYEI 375 (928)
T ss_pred EEEEecCCcEEE
Confidence 555555454444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.003 Score=77.83 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEE----ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004594 558 VESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~---Dg~V~IWd~~t~~~~~~l----~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~ 630 (743)
-.+++|.|.|++||+.-. ...|.+|. ++|-.-..| ......|..+.|++++..|+....|. |.+|-..+-.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 347899999999999875 34455655 343332222 23456799999999999999977665 9999988755
Q ss_pred eeEE-EEec-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE--eccCceeeecCCCEEEEEecCCeEEE-
Q 004594 631 YSLR-TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KVCNLMPIILKGCFILNSIFNCYLLL- 705 (743)
Q Consensus 631 ~~l~-~l~g-h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~--~~~~~i~~s~~g~~L~sgs~Dg~v~v- 705 (743)
.-++ .+.- ....+..+.|+|..+..|.....++.+.+++..-......- ....++....||+.+........+.-
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 3333 3331 22345569999998877777776677777665421111000 01123444556665554443322211
Q ss_pred ------EecccceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 706 ------HRIFLNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 706 ------h~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
-.....+..+++...+..+++...||.|.+|.
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 11112233344444355688888899888876
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0054 Score=65.42 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=109.6
Q ss_pred CCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCeE
Q 004594 528 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH------------------DKKAVLWCTESFTV 589 (743)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~------------------Dg~V~IWd~~t~~~ 589 (743)
+.....+.+++.. ..+..+..+..|.-.-..+.+.|||+.|+++-- +-.+.+.|..+++.
T Consensus 73 ~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 73 ETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred CCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 3333444444444 245667777777766678889999977776531 12334445566776
Q ss_pred EEE--E--ccCCCCEEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCCeeEEEE-------ecCCCCeEEEEEecC
Q 004594 590 KST--L--EEHTQWITDVRFSPSLSRLATSSADR-------TVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPS 651 (743)
Q Consensus 590 ~~~--l--~~H~~~V~~l~fspd~~~L~Sgs~Dg-------~V~vWDl~~~~~~l~~l-------~gh~~~V~sl~fspd 651 (743)
+.. + .-|...|..+++.++|..++..-..| .|-+++.... +..+ ..-...|-+|+++.+
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCC
Confidence 655 3 33777899999999987766654433 2444443321 1211 123467899999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCC-EEEEEecCC
Q 004594 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGC-FILNSIFNC 701 (743)
Q Consensus 652 g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~-~L~sgs~Dg 701 (743)
+..+.+|+-..+.+.+||..+++.+........+.+.+... |+++.+...
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCceEEeCCCcc
Confidence 99899999999999999999999988877665544443222 555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=69.44 Aligned_cols=190 Identities=12% Similarity=0.052 Sum_probs=113.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCC-eEEEEEcCCCCEEEEEeCCCc-----EE
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDKK-----AV 580 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~-V~~i~fspdg~~LaSgs~Dg~-----V~ 580 (743)
..++.|+.||.|.++. ..+..++.+..+... |.-+....+-.+|++-++|+. |+
T Consensus 36 ~~vvigt~~G~V~~Ln--------------------~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 36 GSVVIGTADGRVVILN--------------------SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred ceEEEeeccccEEEec--------------------ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 5788899999988872 233445566666665 444433334467888777754 89
Q ss_pred EEECCCC------eEE--EEEcc-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCCee-EEEEecCCCCeE
Q 004594 581 LWCTESF------TVK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYS-LRTFTGHSTTVM 644 (743)
Q Consensus 581 IWd~~t~------~~~--~~l~~-----H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD--l~~~~~~-l~~l~gh~~~V~ 644 (743)
|||++.. .++ ..+.. .+.++.+++++.+-..+|+|-.||.|.++. +...+.. .........+|+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 9998642 233 12222 246789999999989999999999999994 3221221 222223457899
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-Eecc--Cceeee-cCCCE-EEEEecCCeEEEEecccceEEEeec
Q 004594 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKVC--NLMPII-LKGCF-ILNSIFNCYLLLHRIFLNLLSVSEW 718 (743)
Q Consensus 645 sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~-~~~~--~~i~~s-~~g~~-L~sgs~Dg~v~vh~~~v~~l~vs~~ 718 (743)
.+.|..++..+++.+. -..|.+|.+....+... +..+ +.-+++ .++.+ +++++. ..+.+.+......++.+.
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 9999998876433333 45799999984442222 3222 111211 23333 333332 346666655555555554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.035 Score=57.74 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=89.7
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCee-EEE
Q 004594 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYS-LRT 635 (743)
Q Consensus 559 ~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fs-pd~~~L~Sgs~Dg~V~vWDl~~~~~~-l~~ 635 (743)
.+++|.+ ++.++++-...+.|..|+..++.... +... . ...+++. ++ ..|+.+..++ +.++|+.++... +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 3678998 77788887789999999998876543 3222 2 6677777 55 5555555544 455598876432 122
Q ss_pred Ee--c-CCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeEEEEEe---ccCceeeecCCCEEEE-EecC
Q 004594 636 FT--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK---VCNLMPIILKGCFILN-SIFN 700 (743)
Q Consensus 636 l~--g-h~~~V~sl~fspdg~~llaSgs~D--------g~IrvWDl~tg~~v~~~~---~~~~i~~s~~g~~L~s-gs~D 700 (743)
.. . .....+.+++.|+|. ++++.... |.|..++.. ++...... ..+.++++++++.|+. -+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 21 1 335688999999987 66565533 457777877 55443333 3467999999997764 4555
Q ss_pred CeEEEE
Q 004594 701 CYLLLH 706 (743)
Q Consensus 701 g~v~vh 706 (743)
+.|...
T Consensus 156 ~~i~~~ 161 (246)
T PF08450_consen 156 GRIWRF 161 (246)
T ss_dssp TEEEEE
T ss_pred ceeEEE
Confidence 555553
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.013 Score=64.99 Aligned_cols=155 Identities=10% Similarity=0.028 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe-----------C
Q 004594 556 SKVESCHFSPDG--KLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-----------A 617 (743)
Q Consensus 556 ~~V~~i~fspdg--~~LaS-----gs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-----------~ 617 (743)
..|....|+|.+ ..||. .+.++.++||.+.....+.+-.-....=..+.|++.|++|+.-- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 458888999953 33443 35678899999876665544332233334678888887654321 1
Q ss_pred CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEE-EEEeCCCcEEEEECCCCeEEEEEec--cCceeeecCCCEE
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGVFKV--CNLMPIILKGCFI 694 (743)
Q Consensus 618 Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~ll-aSgs~Dg~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L 694 (743)
...++|+++..... .......++|.+++|.|.+..+. ++|-.+..+.++|++.. .+..+.- .+.+.|+|.++|+
T Consensus 254 esnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 254 ESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYI 330 (561)
T ss_pred cceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEE
Confidence 35688889885443 33335678999999999876543 45567889999999966 4444432 3557899999999
Q ss_pred EEEecC---CeEEEEecccceE
Q 004594 695 LNSIFN---CYLLLHRIFLNLL 713 (743)
Q Consensus 695 ~sgs~D---g~v~vh~~~v~~l 713 (743)
+..+.| |.+.+++......
T Consensus 331 l~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred EEecCCccccceEEeccCCceE
Confidence 998776 4566666554433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.8e-05 Score=86.69 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=110.5
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC--CCeE
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTV 621 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~--Dg~V 621 (743)
.++..++|+.|+...+||+|+-+.+.|+.|+..|.|++|++.+|.......+|..+|+-|.=+-+|..+++.+. ....
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 35567788899999999999999999999999999999999999999999999999999988778877665543 3367
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ec-------cCceeeecCCCE
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KV-------CNLMPIILKGCF 693 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~-~~-------~~~i~~s~~g~~ 693 (743)
-+|++.......++|.+ -.++.|+......++.+.. ..+.|||+.++..+.++ .+ .+...|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~-d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEA-DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccc-cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89998765444566653 4567887653322323333 46899999998765553 22 134568888777
Q ss_pred EEE
Q 004594 694 ILN 696 (743)
Q Consensus 694 L~s 696 (743)
|+.
T Consensus 1245 Iln 1247 (1516)
T KOG1832|consen 1245 ILN 1247 (1516)
T ss_pred Eee
Confidence 664
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.017 Score=61.71 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=117.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEEccCCCCE--EEEEEcCCCCEEEEEeC-----CCeEEEEECCC
Q 004594 558 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTEN 628 (743)
Q Consensus 558 V~~i~fsp-dg~~LaSgs~Dg~-V~IWd~~t~~~~~~l~~H~~~V--~~l~fspd~~~L~Sgs~-----Dg~V~vWDl~~ 628 (743)
...++.+| +...++.+-.-|+ ..+||+.+++....+....+.- -.-+|++||++|+|.-. .|.|-|||+..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 6667777777666 7899999998887775544332 34679999999998743 68899999995
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-----------------CCCcEEEEECCCCeEEEEEec----c----C
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKV----C----N 683 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs-----------------~Dg~IrvWDl~tg~~v~~~~~----~----~ 683 (743)
.-..+..|..|.-....|.+.|||+.|++.-+ .+-.|.+.|.++|+.+..... + .
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 55557788888777888999999976665432 123455667778877766442 1 2
Q ss_pred ceeeecCCCEEEEEecCCe-------EEEEec-----------------ccceEEEeecCCCCEE-EEEeCCCcEEEeCC
Q 004594 684 LMPIILKGCFILNSIFNCY-------LLLHRI-----------------FLNLLSVSEWCNPDEI-STSSWKDSCCSHRE 738 (743)
Q Consensus 684 ~i~~s~~g~~L~sgs~Dg~-------v~vh~~-----------------~v~~l~vs~~~~~~~l-aSgs~DG~V~iWd~ 738 (743)
.+++..+|..++..-..+- |.+|+. ...+-++....++.++ +|+-.-+++.+||.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 3556666655544433221 111211 1223344444445555 56667778889964
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0005 Score=77.74 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~-~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
-.|.-+.|+|.-.+||++..+|.|.++.+. ...+.++.-|...|+ +++|.|||+.|+.|-.||+|++.|+.++.. +.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-LV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc-ee
Confidence 458889999999999999999999999987 777888887777777 999999999999999999999999998776 33
Q ss_pred E-EecCCCCeEEEEEec
Q 004594 635 T-FTGHSTTVMSLDFHP 650 (743)
Q Consensus 635 ~-l~gh~~~V~sl~fsp 650 (743)
. .-.-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 3 222345677777764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.01 Score=71.90 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=82.3
Q ss_pred EEEEEcCCCCEEEEEe----CC-CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 004594 559 ESCHFSPDGKLLATGG----HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD 630 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs----~D-g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs---~Dg~V~vWDl~~~~ 630 (743)
+.|+|--||.+||+.. .+ ++|+|||-+ +..-.+-+.-.+.=.+++|-|.|..+++-. .|+.|.+|.-+.-+
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 4689999999999832 24 899999976 433322222334456899999999887764 36678888744211
Q ss_pred ee--EEEEecCCCCeEEEEEecCCCeEEEE---EeCCCcEEEEECCCCe----EEEEEeccCceeeecCCC
Q 004594 631 YS--LRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNGS----CAGVFKVCNLMPIILKGC 692 (743)
Q Consensus 631 ~~--l~~l~gh~~~V~sl~fspdg~~llaS---gs~Dg~IrvWDl~tg~----~v~~~~~~~~i~~s~~g~ 692 (743)
.- ...+......|..++|+.++. +|+. +.....|++|-+.+.. +...+.....+.|+|..+
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~ 347 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTE 347 (1265)
T ss_pred ccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCc
Confidence 10 111222234489999999976 5544 4444459999988754 333333334455666443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.034 Score=61.86 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=100.0
Q ss_pred EEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 004594 560 SCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDT 626 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~-----------Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs--~Dg~V~vWDl 626 (743)
.+.|++.|++|+.--. ...+.|+++.. ..+....+-.++|.+++|.|.++.+++.+ .+-.+.++|+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence 5778888876653211 23466666653 33333335688999999999888776554 5889999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCC-eEEEEEecc--CceeeecCCCEEEEEe---
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-SCAGVFKVC--NLMPIILKGCFILNSI--- 698 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs--~Dg~IrvWDl~tg-~~v~~~~~~--~~i~~s~~g~~L~sgs--- 698 (743)
+.. + .+......=+.+.|+|.++++|+.|- .-|.|-|||.... +++..+.+. ..+.|+|++.|+.+..
T Consensus 306 r~N---l-~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 306 RGN---L-RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred ccc---e-EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 864 2 22234455577899999988776443 2377999998764 455466654 3356999999988874
Q ss_pred ---cCCeEEEEecccc
Q 004594 699 ---FNCYLLLHRIFLN 711 (743)
Q Consensus 699 ---~Dg~v~vh~~~v~ 711 (743)
.|..++||+....
T Consensus 382 k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 382 KLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccccCcceEEEEecCc
Confidence 3777888876653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.04 Score=61.66 Aligned_cols=170 Identities=9% Similarity=-0.057 Sum_probs=97.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEE-EEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC--C
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS--T 641 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~-l~fsp--d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~--~ 641 (743)
+..++.+..++.|..+|..+++.+-.+......+.. ..-+| .+..++.++.++.|..+|..+++. +..+.-.. .
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~~~ 238 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-IWQQRISQPTG 238 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-hheeccccCCC
Confidence 345667778899999999999988766532111100 00122 134577778899999999988764 33221100 0
Q ss_pred -----CeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEEEecccceEE
Q 004594 642 -----TVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLS 714 (743)
Q Consensus 642 -----~V~sl~fsp--dg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~ 714 (743)
....+...| .+..++ .++.++.+..+|+.+|+.+..............+..|+.++.++.+...+.......
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 001111122 133344 566789999999999987765543222223345667777777777666443222222
Q ss_pred Eeec-----------CCCCEEEEEeCCCcEEEeCC
Q 004594 715 VSEW-----------CNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 715 vs~~-----------~~~~~laSgs~DG~V~iWd~ 738 (743)
|... -..+.|+.++.||.|+..|.
T Consensus 318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EcccccCCCcccCCEEECCEEEEEeCCCEEEEEEC
Confidence 2110 01567888888888877653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.031 Score=58.33 Aligned_cols=114 Identities=7% Similarity=-0.033 Sum_probs=66.7
Q ss_pred cCCCCCceEEEEecCCCccccccCccccCCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~~~fs~d~~~~l~~~~~~l~d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
......-+-+.|+||+. +++.....|+|++|+.....-....... .. ...-.
T Consensus 40 kD~~PQWRkl~WSpD~t---------------lLa~a~S~G~i~vfdl~g~~lf~I~p~~-----~~--------~~d~~ 91 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCT---------------LLAYAESTGTIRVFDLMGSELFVIPPAM-----SF--------PGDLS 91 (282)
T ss_pred CCCCchheEEEECCCCc---------------EEEEEcCCCeEEEEecccceeEEcCccc-----cc--------CCccc
Confidence 33444677889999884 8888889999999965432110000000 00 00123
Q ss_pred CCeEEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CeEEEEEc---cCCCCEEEEEEcCCCCEEEEEeC
Q 004594 556 SKVESCHFSPD------GKLLATGGHDKKAVLWCTES-----FTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 617 (743)
Q Consensus 556 ~~V~~i~fspd------g~~LaSgs~Dg~V~IWd~~t-----~~~~~~l~---~H~~~V~~l~fspd~~~L~Sgs~ 617 (743)
..|..+.|.+- ...|++-..+|.++-|-+.. .+...+|. .+...|.++.|+|..++|+.|+.
T Consensus 92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 44556666431 12455666777777776532 22333332 24678999999999888777654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00013 Score=82.39 Aligned_cols=182 Identities=11% Similarity=0.073 Sum_probs=124.1
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeE--EEEEccCCCCEEEEEEcC-CCCEEEEEeC----CCeEEEEE
Q 004594 555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWD 625 (743)
Q Consensus 555 ~~~V~~i~fsp--dg~~LaSgs~Dg~V~IWd~~t~~~--~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~----Dg~V~vWD 625 (743)
+..+.|+++.- +...++.|..+|.|.+-.++...- -....+|...+++++|++ |...||.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44578888765 445789999999999998765321 234567888899999998 5667777633 67899999
Q ss_pred CCCCCe-e--EEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEE--eccCceeeec-CCCEEEEE
Q 004594 626 TENPDY-S--LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVF--KVCNLMPIIL-KGCFILNS 697 (743)
Q Consensus 626 l~~~~~-~--l~~l~-gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg-~~v~~~--~~~~~i~~s~-~g~~L~sg 697 (743)
+.+.-. + -..|. +......++||..+. .++.+|...+.|+++|+|.. .....+ +.+..+.+.| .+.|+++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 986411 1 11122 244567789999664 46778888889999999832 111112 2356677888 77777766
Q ss_pred ecCCeEEEEecc--------------------cceEEEeecCCCCEEEEEeCC-CcEEEeCCC
Q 004594 698 IFNCYLLLHRIF--------------------LNLLSVSEWCNPDEISTSSWK-DSCCSHREL 739 (743)
Q Consensus 698 s~Dg~v~vh~~~--------------------v~~l~vs~~~~~~~laSgs~D-G~V~iWd~~ 739 (743)
. |+.|.+|+.. +..+++++.. .+.++++..| ++|+.+|-.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEeccc
Confidence 6 8899998821 3356666666 6777777766 467777643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0009 Score=45.86 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.8
Q ss_pred eeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
..+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.074 Score=59.52 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=95.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEccCCC-------CEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~-------~V~~l~fsp--d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
..++.++.++.+..+|..+++.+........ ....+.-+| .+..++.++.+|.+..+|+.+++. +....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~- 283 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE- 283 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec-
Confidence 3566677789999999988876544321100 011122233 256777788899999999998765 33222
Q ss_pred CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc--Cc-eeeecCCCEEEEEecCCeEEEEecccceEEE
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NL-MPIILKGCFILNSIFNCYLLLHRIFLNLLSV 715 (743)
Q Consensus 639 h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~--~~-i~~s~~g~~L~sgs~Dg~v~vh~~~v~~l~v 715 (743)
......+... +..++ .++.|+.|..+|..+|+.+...... .. ..-...+.+|+.++.||.+.+.+.....+.+
T Consensus 284 -~~~~~~~~~~--~~~vy-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 284 -YGSVNDFAVD--GGRIY-LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -CCCccCcEEE--CCEEE-EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 1112222222 33344 5667999999999999876544321 11 1111246677888888888763322111111
Q ss_pred e-----------ecCCCCEEEEEeCCCcEEEeCC
Q 004594 716 S-----------EWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 716 s-----------~~~~~~~laSgs~DG~V~iWd~ 738 (743)
. +.-.++.|+.++.||.|+.++.
T Consensus 360 ~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 360 QQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 1 1111458888899998887753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0098 Score=67.44 Aligned_cols=169 Identities=13% Similarity=0.180 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCee
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYS 632 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW-Dl~~~~~~ 632 (743)
..-....+.++|.|+++++++ ||.-.||.....+.... +.-..++|.+ ...+|+-....+|.|+ ++....
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~-- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEV-- 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-T--
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCcccc--
Confidence 344478899999999998855 78888888555444332 2234678888 4557777778999996 333211
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc--CceeeecCCCEEEEEecCCeEEEEeccc
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~--~~i~~s~~g~~L~sgs~Dg~v~vh~~~v 710 (743)
...+.- ...+..|-. |. +|+..+ ++.|.+||..+++.++.+... ..+.|+++|.+++..+.+....+-....
T Consensus 102 ~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 102 VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 122221 112343433 55 444444 448999999999999999865 4688999999999998886555432222
Q ss_pred -----------ceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 711 -----------NLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 711 -----------~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
..+.+...- ...+-||-|++.|.+|.+
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d~fiYtT 213 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI-SERIKSGCWVEDCFIYTT 213 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE--S--SEEEEETTEEEEE-
T ss_pred hcccccccCchhceEEEEEe-cceeEEEEEEcCEEEEEc
Confidence 033332220 346888888888877744
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=45.29 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.6
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD 625 (743)
++++..+..|...|.++.|++.+..+++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999989999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00066 Score=47.63 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHhcCCCC
Q 004594 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (743)
Q Consensus 9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~ 39 (743)
+..|+..|++||.+.||.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5679999999999999999999999998764
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.038 Score=63.74 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=77.4
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
.+++++-|+.-|.+.+|....+. .......+-.+.+..+..|++..++|.|+..|.|.|+-+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~------------------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGE------------------MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CCceEEEecccceEEEEecCchh------------------hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 45899999999999999554331 011111223455667788888889999999999999976
Q ss_pred CCCeE-----EEEE-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004594 585 ESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 585 ~t~~~-----~~~l-~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~ 628 (743)
....+ +..+ ..|...|+|++|++++..|++|...|+|.+-.+..
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 54221 1111 23788999999999999999999999999887765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0059 Score=71.03 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
.+.+.|++++ +++|+-|..+|.|++++... .+ .+...|+.. ..+|.+++||+.||+|.|..+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 3558888885 67999999999999999753 33 344455544 56799999999999999999888665 33
Q ss_pred EEecCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECCC---CeEEEEEe--ccCceeeecCCCEEEEEecCCe
Q 004594 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINN---GSCAGVFK--VCNLMPIILKGCFILNSIFNCY 702 (743)
Q Consensus 635 ~l~gh~~~V~sl~fspd----g~~llaSgs~Dg~IrvWDl~t---g~~v~~~~--~~~~i~~s~~g~~L~sgs~Dg~ 702 (743)
.+. -..++.+|+++|+ ....+++||..| +.++.-+- ...+ .+. .....++.-.|.+|+-++.+|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv 181 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGV 181 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCc
Confidence 333 3367999999998 223566888777 77765332 1111 111 1122445567778887777764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.022 Score=51.64 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=67.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 004594 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~~i~fsp---dg-~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l 633 (743)
|+++++.. || +.|++|++|..||||+-+ +.+..+.+ ++.|+++.-... .+|+.+..+|+|-+|+-... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence 55666654 33 479999999999999854 56666665 456777776654 67999999999999986432 2
Q ss_pred EEEecCCCCeEEEEEe---cCCCeEEEEEeCCCcEE
Q 004594 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fs---pdg~~llaSgs~Dg~Ir 666 (743)
...+ ....++++++. -+|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3333 22335665543 34444566777788764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.024 Score=65.77 Aligned_cols=129 Identities=15% Similarity=0.091 Sum_probs=86.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-----CeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-------
Q 004594 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY------- 631 (743)
Q Consensus 565 pdg~~LaSgs~Dg~V~IWd~~t-----~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~------- 631 (743)
++|++... .+++|.|.|..+ .+.+..+. -......|+++|||+++++++. +.+|.|.|+.+...
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 36776665 367899999987 34555443 3455788999999998866654 99999999987442
Q ss_pred ---e-EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----------CeEEEEEecc-----Cc----eeee
Q 004594 632 ---S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVFKVC-----NL----MPII 688 (743)
Q Consensus 632 ---~-l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t----------g~~v~~~~~~-----~~----i~~s 688 (743)
+ +....- .......+|.++|. .+.|...|..|..||+.+ ...+..+..+ .. -...
T Consensus 363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~ 440 (635)
T PRK02888 363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKE 440 (635)
T ss_pred ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCC
Confidence 1 111111 22344678998875 777888999999999976 2333333322 11 1235
Q ss_pred cCCCEEEEEe
Q 004594 689 LKGCFILNSI 698 (743)
Q Consensus 689 ~~g~~L~sgs 698 (743)
++|+||++..
T Consensus 441 ~dgk~l~~~n 450 (635)
T PRK02888 441 ADGKWLVSLN 450 (635)
T ss_pred CCCCEEEEcc
Confidence 8999998874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.014 Score=63.83 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=78.4
Q ss_pred eCCCcEEEEECCCC--eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CCe----------eEEEEe
Q 004594 574 GHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----PDY----------SLRTFT 637 (743)
Q Consensus 574 s~Dg~V~IWd~~t~--~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~----~~~----------~l~~l~ 637 (743)
-.++.|.|+|-... +....-.-|..+|.++.+++-++.+++....|.|..|.... ++. -+..+.
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 35788999987543 23333456999999999999999999999999999999873 111 012233
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.......+++|+|++. .+.+-..|..||++++++|+.+..+
T Consensus 199 K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhh
Confidence 4456788999999987 4556668999999999998866544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.51 Score=52.94 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=97.2
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE--cc------CCCCEEEEEEcC-----CC-
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l--~~------H~~~V~~l~fsp-----d~- 609 (743)
.+.++..+....++|++|+.| |=-++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 466777788889999999997 5559999999999999999887766542 22 245688888863 22
Q ss_pred --CEEEEEeCCCeEEEEECCC---CCeeE---EEEecCCCCeEEEE-EecC--------------------CCeEEEEEe
Q 004594 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD 660 (743)
Q Consensus 610 --~~L~Sgs~Dg~V~vWDl~~---~~~~l---~~l~gh~~~V~sl~-fspd--------------------g~~llaSgs 660 (743)
-++++|...|.+.+|.+.- +...+ .....+.+.|..|. |+.+ .+.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999998751 22211 12224566776665 3221 123555666
Q ss_pred CCCcEEEEECCCCeEEEEEecc----Cceee-----ecCCCEEEEEecCCeEEEEecc
Q 004594 661 NNSEIRYWSINNGSCAGVFKVC----NLMPI-----ILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~----~~i~~-----s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
+..|||+..-+.++.+..... ..+++ ...+..|++-..+|.+++....
T Consensus 234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 668999999888776655432 12333 2356778888999999996654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.086 Score=64.24 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCC-
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NPD- 630 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~----~~~- 630 (743)
+.|.++.|.-+..-|+.+..+|.|.+-|..+.... ....-...|.+++|+||...++-.+.+.+|.+-+-. ...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 56999999999999999999999999988775432 223346789999999999999888888888776431 000
Q ss_pred ---------eeE--------EEEecC---------------------CCCeEEEEEecCCCeEEEEE---eCC-CcEEEE
Q 004594 631 ---------YSL--------RTFTGH---------------------STTVMSLDFHPSKEDLLCSC---DNN-SEIRYW 668 (743)
Q Consensus 631 ---------~~l--------~~l~gh---------------------~~~V~sl~fspdg~~llaSg---s~D-g~IrvW 668 (743)
..+ ..|.|. .+.=++|+|--||.++.++. ..+ +.|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 000 112111 11224589999987544321 233 789999
Q ss_pred ECCCCeEEE----EEeccCceeeecCCCEEEEE---ecCCeEEE-------Ee-------c---ccceEEEeecCCCCEE
Q 004594 669 SINNGSCAG----VFKVCNLMPIILKGCFILNS---IFNCYLLL-------HR-------I---FLNLLSVSEWCNPDEI 724 (743)
Q Consensus 669 Dl~tg~~v~----~~~~~~~i~~s~~g~~L~sg---s~Dg~v~v-------h~-------~---~v~~l~vs~~~~~~~l 724 (743)
|.+ |..-. .......++|-|.|.+|++- +.|+.|.+ |. . .+..+.|... +..|
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~--sdiL 304 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN--SDIL 304 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC--CCce
Confidence 987 43211 11223568889999998875 34455665 21 1 1334555544 4455
Q ss_pred EE---EeCCCcEEEeCCC
Q 004594 725 ST---SSWKDSCCSHREL 739 (743)
Q Consensus 725 aS---gs~DG~V~iWd~~ 739 (743)
+. ......|++|-..
T Consensus 305 Av~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred eeeecccccceEEEEEec
Confidence 55 4455559999543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=74.76 Aligned_cols=108 Identities=15% Similarity=0.242 Sum_probs=84.1
Q ss_pred EEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 560 SCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~----Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
-++|+|...+||+++. .|.|.||- ++|++-+..+ ..-.+++++|||..-.|+.|-.-|.+.+|...+.+. -..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-eee
Confidence 3679999999988874 57888884 5666554332 233467799999988889998999999999887553 334
Q ss_pred EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 636 l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
...|..+|..+.|+++|. .++++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 456999999999999987 55699999999999765
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.074 Score=54.85 Aligned_cols=113 Identities=9% Similarity=-0.042 Sum_probs=80.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl 646 (743)
..+++.|+..+.++.-|..+++.+..- .-..+|.+-+.- -+++++.|+..|.+++.+..++.. ...+......-...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehhhhccce
Confidence 457888999999999999888765432 123344443332 467899999999999999999865 34443222211223
Q ss_pred EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccC
Q 004594 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683 (743)
Q Consensus 647 ~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~ 683 (743)
...+++. ++..++.|++.+..|.++..|+...+...
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCC
Confidence 3455654 77899999999999999999988877543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.2 Score=51.73 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 504 d~~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
+.+.++..||..+.+...+...+. -.|+..-+ ..|.|-+.- -|.+++.|+..+.+.+.+
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~-------~~We~ilg-------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGN-------LIWEAILG-------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCc-------EEeehhhC-------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 334788888888877776554431 11222111 122222221 477899999999999999
Q ss_pred CCCCeEEEEEccCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004594 584 TESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 584 ~~t~~~~~~l~~H~~~V~~-l~fspd~~~L~Sgs~Dg~V~vWDl~~~~ 630 (743)
..++.....+..-.. |.+ ....+++..|..|+.|++.+..|.++..
T Consensus 80 ~~tGs~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 80 VKTGSQIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ecchhheeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 999977666643222 222 3346788999999999999999998743
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.022 Score=66.10 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=67.2
Q ss_pred CCeEEEEECCC----CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE------------EEEEec
Q 004594 618 DRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------------AGVFKV 681 (743)
Q Consensus 618 Dg~V~vWDl~~----~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~------------v~~~~~ 681 (743)
++.|.+.|.++ +.. +..+..-......|+++|||.++++++..+.+|.|.|+.+.+. +.....
T Consensus 295 gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 56789999887 333 3333334566889999999999999999999999999987542 233322
Q ss_pred ---cCceeeecCCCEEEEEecCCeEEEEecc
Q 004594 682 ---CNLMPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 682 ---~~~i~~s~~g~~L~sgs~Dg~v~vh~~~ 709 (743)
.-...|..+|....+-..|..|..|+..
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 2346788888888888889888888754
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.026 Score=63.84 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=93.8
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCe--EEE
Q 004594 551 IPASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VRV 623 (743)
Q Consensus 551 l~~H~~~V~~i~fspdg~~LaSgs---~D-g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg~--V~v 623 (743)
+..-...+..-+|+|++..++... .. ..+.++|+.+++....+. ..+.-..-+|+|||++|+ +...||. |++
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 334455677889999998765542 22 358889998876554443 233345678999988775 5555776 555
Q ss_pred EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCeEEEEEe----ccCceeeecCCCEEEEE
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFK----VCNLMPIILKGCFILNS 697 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvW--Dl~tg~~v~~~~----~~~~i~~s~~g~~L~sg 697 (743)
+|+.... +..+..-.+.-+.=.|+|||+.++++.+..|.-.|| |++.+.. ..+. ......++|+|++|+..
T Consensus 267 ~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 267 MDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 5776644 333544444444678999999999998888875555 5554433 2222 12345688999998877
Q ss_pred ec
Q 004594 698 IF 699 (743)
Q Consensus 698 s~ 699 (743)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 64
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.26 Score=51.63 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=105.2
Q ss_pred EEeeCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004594 549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspd-g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H-~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl 626 (743)
+.+.+-...|..|+|+|+ +.++++....+.|..++.+ ++.++.+.-. .+....|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 345555556999999996 5577777778888888864 7777776433 356889999877777777667999999988
Q ss_pred CCCCe--e---EEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---CeEEEEEe------------c
Q 004594 627 ENPDY--S---LRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK------------V 681 (743)
Q Consensus 627 ~~~~~--~---l~~l~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t---g~~v~~~~------------~ 681 (743)
..... . +..+. .+...+-.|+|+|.+..+++..- ..-.++|.+.. ...+.... .
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceecc
Confidence 43221 1 11121 24456899999999887776544 44566666543 22221111 1
Q ss_pred cCceeeecCC-CEEEEEecCCeEEEEecccceEEEeecCC----------CCEEEEEeCCCcEEEeCCCccc
Q 004594 682 CNLMPIILKG-CFILNSIFNCYLLLHRIFLNLLSVSEWCN----------PDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 682 ~~~i~~s~~g-~~L~sgs~Dg~v~vh~~~v~~l~vs~~~~----------~~~laSgs~DG~V~iWd~~~l~ 742 (743)
.+.+.++|.. .+++.......|...+.....+..-.-.. .-.=++-+.||+++|-.+..+|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLF 244 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceE
Confidence 2446677654 44555556666666665555444322111 1233555578999888777665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=60.84 Aligned_cols=129 Identities=11% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t----~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
...++.+++++.+-+.+|+|-.+|.|..+.-+- +........-..+|+.+++..++..++-...-..|.+|.+...
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 356789999999999999999999999885321 2222222334678999999888776333334678999998865
Q ss_pred CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-ccCc
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-VCNL 684 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~-~~~~ 684 (743)
...+.++..|...+.|..|++....++|++ +..|.+||......-..|. ++..
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeE
Confidence 534556888888899999998755466443 4579999988655545555 4443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00067 Score=76.75 Aligned_cols=114 Identities=19% Similarity=0.376 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCeeE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TENPDYSL 633 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~Dg~V~vWD-l~~~~~~l 633 (743)
..+.+++|-.+.+++.+|...+.|.++|++-. +.....-.+..|..+.+.| .+.++++-. ||.|-+|| .++-+.++
T Consensus 155 ~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 155 DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred cCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 44668888888899999999999999998721 1112222345566777788 677887765 99999999 55545444
Q ss_pred EEEecCCC----CeEEEEEecCCCeEEEEEeCC-CcEEEEECC
Q 004594 634 RTFTGHST----TVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN 671 (743)
Q Consensus 634 ~~l~gh~~----~V~sl~fspdg~~llaSgs~D-g~IrvWDl~ 671 (743)
..+...+. .+..++|+|....+++++..| ++|+.||+.
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 44443333 489999999988888888876 679999986
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0012 Score=76.69 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=95.1
Q ss_pred CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC-cE
Q 004594 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg-~I 665 (743)
.+..++|..|+...+|++|+-+.+.|+.|+..|.|++|++.++.. .....+|.+.|+.|.-+.+|..+|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455667888999999999999999999999999999999999876 6677889999999999999988776665554 57
Q ss_pred EEEECCC-CeEEEEEeccCceeeecCCCEEEEEecCCeEEEEec
Q 004594 666 RYWSINN-GSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 666 rvWDl~t-g~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh~~ 708 (743)
.+|++.. +..++.|.....+.|+....+-+.|.......+++.
T Consensus 1170 aLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred HHhccccccCccccccccceeehhhhHHHHHhcccccceEEEec
Confidence 7999864 677788888777777765555445544444555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.07 Score=60.01 Aligned_cols=142 Identities=9% Similarity=0.136 Sum_probs=89.1
Q ss_pred EEEEEcCCCCEEEEEeCC----------CcEEEEECCCCe-EEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEE
Q 004594 559 ESCHFSPDGKLLATGGHD----------KKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~D----------g~V~IWd~~t~~-~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vW 624 (743)
..+.|-..|.+|+.--.- ..+-|+.++... ++..+ .-...|...+|.|.|+.+++-+. ..+|.+|
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEE
Confidence 346677788877653211 123344443322 12222 34677899999999988765543 5679999
Q ss_pred ECCC-CCe--eEEEEecCCCCeEEEEEecCCCeEEEEE--eCCCcEEEEECCCCeEE----EEEeccCceeeecCCCEEE
Q 004594 625 DTEN-PDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCA----GVFKVCNLMPIILKGCFIL 695 (743)
Q Consensus 625 Dl~~-~~~--~l~~l~gh~~~V~sl~fspdg~~llaSg--s~Dg~IrvWDl~tg~~v----~~~~~~~~i~~s~~g~~L~ 695 (743)
.+.+ ... .+..+. ....+.|-|+|.|..+++.+ |..|.+.++|+....+. ......+.+.|.|.|+|++
T Consensus 476 ~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 476 AVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred EeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEE
Confidence 8873 222 123333 24578899999999766543 45789999999853222 1222345688999999999
Q ss_pred EEecCCeE
Q 004594 696 NSIFNCYL 703 (743)
Q Consensus 696 sgs~Dg~v 703 (743)
+++.-...
T Consensus 554 T~ss~wrh 561 (698)
T KOG2314|consen 554 TSSSSWRH 561 (698)
T ss_pred Eeeehhhh
Confidence 99865433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.64 Score=51.95 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=108.1
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCee
Q 004594 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYS 632 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~---Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs-~Dg~V~vWDl~~~~~~ 632 (743)
.-..++|+++++.++.+.. +++|.+.|..+.+.+.+...-..+ ..+++.|++..++.+. .+++|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v- 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV- 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-
Confidence 4567999999988777766 688999998888877765433334 8899999999776655 799999999776432
Q ss_pred EEE----EecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEE-Eec----cCceeeecCCCEEEEEecC-
Q 004594 633 LRT----FTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV-FKV----CNLMPIILKGCFILNSIFN- 700 (743)
Q Consensus 633 l~~----l~gh~~~V~sl~fspdg~~llaSgs~D--g~IrvWDl~tg~~v~~-~~~----~~~i~~s~~g~~L~sgs~D- 700 (743)
.+. ...-......+.+.|+|.+++++...+ +.|.+.|..++..... +.. ...+.+.|+|.++.+....
T Consensus 195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred eccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence 210 111223456789999999887777665 6899999998876654 222 2347889999998888444
Q ss_pred CeEEEEeccc
Q 004594 701 CYLLLHRIFL 710 (743)
Q Consensus 701 g~v~vh~~~v 710 (743)
+.+.+.+...
T Consensus 275 ~~V~vid~~~ 284 (381)
T COG3391 275 GTVSVIDGAT 284 (381)
T ss_pred CeEEEEeCCC
Confidence 6666655443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.6 Score=48.95 Aligned_cols=141 Identities=12% Similarity=0.224 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEc-----cCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~------~~~~l~-----~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
+-...|++..++.++++.-.++.+.++++.... ....+. .+...+..|+|+|....|+.+....-.++|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 347788998778777766668999999884311 111121 244568999999987777777777666666
Q ss_pred ECCC--CCeeEEE--Ee------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecc------------
Q 004594 625 DTEN--PDYSLRT--FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC------------ 682 (743)
Q Consensus 625 Dl~~--~~~~l~~--l~------gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~------------ 682 (743)
.+.. ....+.. .. .....+.++.++|...++++-+.....|.++| ..|+.+..+.-.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---S
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCC
Confidence 6653 1111211 11 13345889999999888988899999999999 667766655422
Q ss_pred -CceeeecCCCEEEEE
Q 004594 683 -NLMPIILKGCFILNS 697 (743)
Q Consensus 683 -~~i~~s~~g~~L~sg 697 (743)
..+++.++|...+++
T Consensus 224 pEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 224 PEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEEE-TT--EEEEE
T ss_pred ccEEEECCCCCEEEEc
Confidence 347777777544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=57.70 Aligned_cols=179 Identities=10% Similarity=-0.028 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~------~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
+.|.++.|+.+..+ ++-..||++++||+.... .+....-....|.+..+..+|-.++| .++.|.+..-...
T Consensus 81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence 78999999876554 455679999999986322 11111111222333333334433333 3444444432211
Q ss_pred CeeEEEE---e-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEec
Q 004594 630 DYSLRTF---T-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIF 699 (743)
Q Consensus 630 ~~~l~~l---~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~ 699 (743)
....+.+ . .+........++.+.. +.+....++.|.+.+-.....+........++++|+|++|+.-..
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~ 236 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTD 236 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 1001111 0 0111000122333433 222333445566444332211111112345789999999999888
Q ss_pred CCeEEEEecccc----eEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 700 NCYLLLHRIFLN----LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 700 Dg~v~vh~~~v~----~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
+|.+.+...... .+.......+..+.=||.|..+..|.+
T Consensus 237 ~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~ 279 (410)
T PF04841_consen 237 SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWED 279 (410)
T ss_pred CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCC
Confidence 888877443222 111111122445555555666666644
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.79 Score=52.97 Aligned_cols=105 Identities=6% Similarity=0.003 Sum_probs=64.4
Q ss_pred CCCcEEEEECCCCeEEEEEccCCC--------------------CE-EEEEEcCCCCEEEEEeCCC--------------
Q 004594 575 HDKKAVLWCTESFTVKSTLEEHTQ--------------------WI-TDVRFSPSLSRLATSSADR-------------- 619 (743)
Q Consensus 575 ~Dg~V~IWd~~t~~~~~~l~~H~~--------------------~V-~~l~fspd~~~L~Sgs~Dg-------------- 619 (743)
.++.|..+|..+++.+-.+..... .| ...++.+.+.+++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 467888999999888766543211 01 1234444566777776665
Q ss_pred ----eEEEEECCCCCeeEEEEe--cCCC----CeEEEEEe----cCCC--eEEEEEeCCCcEEEEECCCCeEEEEEe
Q 004594 620 ----TVRVWDTENPDYSLRTFT--GHST----TVMSLDFH----PSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 620 ----~V~vWDl~~~~~~l~~l~--gh~~----~V~sl~fs----pdg~--~llaSgs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
.|.-+|+.+++. +..+. .|.. ......+. -++. .+++.++.+|.|...|.++|+.+..+.
T Consensus 253 ~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 253 LYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 799999998875 44432 1211 00111111 1222 356678889999999999999887665
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.1 Score=50.28 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCC-----------eE
Q 004594 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (743)
Q Consensus 558 V~~i~fspdg~~LaSg-s~D----g~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg-----------~V 621 (743)
+..++++|+|++||.+ +.. ..|+|+|+++++.+...-.... ...+.|.++++.|+....|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999988755 333 4599999999977653211111 23399999988765554333 37
Q ss_pred EEEECCCCCee-EEEEecCCCC--eEEEEEecCCCeEEEEEeCCC---cEEEEECCCC
Q 004594 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG 673 (743)
Q Consensus 622 ~vWDl~~~~~~-l~~l~gh~~~--V~sl~fspdg~~llaSgs~Dg---~IrvWDl~tg 673 (743)
++|++.++... ...|...... ...+..+++++++++...... .|.+.|+..+
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 88888765432 3445443333 578899999998887665444 4888888864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.46 Score=54.09 Aligned_cols=105 Identities=13% Similarity=0.034 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
-...+|.+.+ .+|+-...++|+|+.--+.+....+.. ...+..|-. |.+|+..+.+ .|.+||+.++.. +..+.
T Consensus 71 g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i~ 143 (443)
T PF04053_consen 71 GLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRID 143 (443)
T ss_dssp -SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEES
T ss_pred eeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEEe
Confidence 4467888854 466766688899963212122122321 123444422 7777766544 899999998664 66665
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg 673 (743)
- ..|..|.|++++..+. -.+.| .|.|++.+..
T Consensus 144 v--~~vk~V~Ws~~g~~va-l~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 144 V--SAVKYVIWSDDGELVA-LVTKD-SIYILKYNLE 175 (443)
T ss_dssp S---E-EEEEE-TTSSEEE-EE-S--SEEEEEE-HH
T ss_pred c--CCCcEEEEECCCCEEE-EEeCC-eEEEEEecch
Confidence 2 2388999999987544 44433 6777765433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.027 Score=64.89 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE--
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-- 634 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~-~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~-- 634 (743)
|.--+++..+++|+.|+.-|.|.+|+-..++... ...+-.+.+..+.++++..++|.|+..|.|.|+-+......-.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 4444556678999999999999999966554332 2223445556667788888889999999999998876332111
Q ss_pred ---EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 635 ---TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 635 ---~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
.-..|...|++++|++++..++ +|..-|+|.+-.+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 1224778899999999987554 999999999887765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.069 Score=60.42 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=83.6
Q ss_pred EEEEEcCCCCEEEE-EeCCCcE--EEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCeEEE--EECCCCCee
Q 004594 559 ESCHFSPDGKLLAT-GGHDKKA--VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRV--WDTENPDYS 632 (743)
Q Consensus 559 ~~i~fspdg~~LaS-gs~Dg~V--~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~-Sgs~Dg~V~v--WDl~~~~~~ 632 (743)
..-+|+|||++|+- ...|+.. .++|+.... +..+..-.+.-+.=.|+|||+.|+ +++..|.-.| +|++....
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 35689999987664 4556664 455666555 333443334344667899999875 4455665444 45554443
Q ss_pred EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecc---CceeeecCCCEEEEEecC
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFN 700 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~--IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~D 700 (743)
..+......-..-.|+|+|..+++....+|. |.+.|+.++..+..+... ....+.++|..++..+.-
T Consensus 319 -~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 319 -TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred -eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 3333233333377899999977766644455 777777766544444432 335577888877665543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=62.21 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeEEEEEccCCCC-EEEEEEcCC-------CCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 004594 566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPS-------LSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 566 dg~~LaSg-s~Dg~V~IWd~~t~~~~~~l~~H~~~-V~~l~fspd-------~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l 636 (743)
+.++|+.- ...+.|.-.|++.|+.+..+..|... |.++ .|+ ....+.|-.+..|..||.|-....+..-
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 33444433 35678888999999999999888754 5554 442 3356778889999999998754222211
Q ss_pred e----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec----cCceeeecCCCEEEEEecCCeEEE
Q 004594 637 T----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 637 ~----gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
. .......|++-..+| .||.|+.+|.||+||--.......+.+ ...+.++.||+||+..+....+.+
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLI 644 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEE
Confidence 1 123445666666665 577899999999999432222223333 244778899999887766544444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.022 Score=64.98 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 004594 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 597 ~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~-sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
...|..+.|+|...+||++..+|.|-+..+.- . .+.++.-|...|+ +++|.|||+ ++|.|-.||+|++-|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34588899999999999999999999998873 3 2677765666666 999999976 888999999999999999876
Q ss_pred EEE
Q 004594 676 AGV 678 (743)
Q Consensus 676 v~~ 678 (743)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 655
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.078 Score=63.69 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEECCCCe-EEEEEcc----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 004594 568 KLLATGGHDKKAVLWCTESFT-VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~-~~~~l~~----H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~ 642 (743)
.-.+.|-.++.+..||.+-.. .+..-.. ......|++-..+ .+||+|+.+|.||+||- .+......|.+-..+
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p 620 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP 620 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence 346677778999999988532 2211111 2345677766555 57999999999999994 344445567777899
Q ss_pred eEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 004594 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 643 V~sl~fspdg~~llaSgs~Dg~IrvWDl 670 (743)
|.+|+.+.||+++|+||. ..|-++|.
T Consensus 621 I~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred eeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 999999999999998885 57888875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.66 Score=50.35 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=75.7
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~-~~~~l~-~H~~~V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
.++.+... ...++|++|+-- .+. |+.|. .++|.+|++...+ ....-. .....|.++... +++|+.|+....|
T Consensus 78 ~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 78 KLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCE
Confidence 33444333 346789998876 444 44444 5889999998766 333221 123356666665 5699999998888
Q ss_pred EEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 622 RVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~--gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
.++..+.....+..+. .....+++++|-+++. .++.++.+|.|.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 8875554332233332 2345688999987765 67789999999999775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0022 Score=74.99 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=76.1
Q ss_pred CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEE-----------EcCCCCEEEEEeCCCeE
Q 004594 556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTV 621 (743)
Q Consensus 556 ~~V~~i~fsp---dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~-----------fspd~~~L~Sgs~Dg~V 621 (743)
..+.-|.|+| ..-+++.+-.++.|++.+.++-.. ..|.+|..++++++ ++|||+.|+.++.||.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344455555 666788888899999887664322 34556776665543 57999999999999999
Q ss_pred EEEECCCC----CeeEEEEecCCCC--eEEEEEecC-------CC--eEEEEEeCCCcEEEEECCCCeEE
Q 004594 622 RVWDTENP----DYSLRTFTGHSTT--VMSLDFHPS-------KE--DLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 622 ~vWDl~~~----~~~l~~l~gh~~~--V~sl~fspd-------g~--~llaSgs~Dg~IrvWDl~tg~~v 676 (743)
++|.+.-. ..|++..+.|.+. |+.+ |+.. +. .++.+...+..+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99976321 2356666777632 3333 3321 11 23334455677999988877776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.72 Score=50.06 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=91.6
Q ss_pred cEEEEECCCCeEEEEEccC-CCCEEEE---EEcCC----CCEEEEEeC----------CCeEEEEECCCC-----CeeEE
Q 004594 578 KAVLWCTESFTVKSTLEEH-TQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSLR 634 (743)
Q Consensus 578 ~V~IWd~~t~~~~~~l~~H-~~~V~~l---~fspd----~~~L~Sgs~----------Dg~V~vWDl~~~-----~~~l~ 634 (743)
.|+|.|..+.+.+..+.-. ...|+++ .|..+ ..+|+.|.. .|.|.++++... +..+.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888777766655422 2234443 34332 456776643 289999999873 11112
Q ss_pred EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEecc---CceeeecCCCEEEEEecCCeEEEE--ec
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKVC---NLMPIILKGCFILNSIFNCYLLLH--RI 708 (743)
Q Consensus 635 ~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~-~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~v~vh--~~ 708 (743)
.-....++|++|+-. +..++++. ++.|.+|++...+ .+..-..+ ....+...+.+|+.|.....+.+. +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223457889999877 33455444 4789999998877 44333322 224455668899988876666652 22
Q ss_pred c-------------cceEEEeecCCCCEEEEEeCCCcEEEeC
Q 004594 709 F-------------LNLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 709 ~-------------v~~l~vs~~~~~~~laSgs~DG~V~iWd 737 (743)
. ..+.++..-.+...++.++.+|.|.++.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 1 1122333321234889999999888764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.51 Score=55.72 Aligned_cols=141 Identities=12% Similarity=0.079 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCCcEEEEECC-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCC-CeEEE----
Q 004594 556 SKVESCHFSPDGKLLATGG------HDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRV---- 623 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs------~Dg~V~IWd~~-t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~D-g~V~v---- 623 (743)
..|...+++|+|+.+|..- .|+.-.||-.. .+.......+. ..++-.|+|++..|++.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3578899999999877665 35444555332 22222223332 37889999998877666432 22333
Q ss_pred -------EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE---EECCCCeEEEE-----Ee----c-cC
Q 004594 624 -------WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGSCAGV-----FK----V-CN 683 (743)
Q Consensus 624 -------WDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~Irv---WDl~tg~~v~~-----~~----~-~~ 683 (743)
.+++.+.. .. .....|.++.|+|||..+++.. ++.|.| -....|+ ... +. . ..
T Consensus 428 ~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 428 ATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence 33332221 11 2345799999999999877655 466766 3333443 111 11 1 13
Q ss_pred ceeeecCCCEEEEEecCCeEEEE
Q 004594 684 LMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 684 ~i~~s~~g~~L~sgs~Dg~v~vh 706 (743)
.+.|..++.++ ++..++...+|
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred cceEecCCEEE-EEecCCCCceE
Confidence 46677888754 54444433343
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.1 Score=49.96 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeE
Q 004594 558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~~i~fspdg~~L-aSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg~V~vWDl~~~~~~l 633 (743)
-.++++++.++.+ ++...++.|.+.|..+.+.+....--. ....++|+|+++.++.+.. +++|.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4567888888744 444456889999977766555443222 5678999999887766655 6889999988766533
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE--------EEeccCceeeecCCCEEEEEecC
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------VFKVCNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~--------~~~~~~~i~~s~~g~~L~sgs~D 700 (743)
....+- .+ ..+++.|+|..++++-..+++|.+.|.......+ .......+.+.++|.++...-..
T Consensus 155 ~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 155 TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 433332 33 8899999999888888789999999987765553 11223457788999976665444
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.44 Score=50.00 Aligned_cols=178 Identities=10% Similarity=0.014 Sum_probs=102.6
Q ss_pred CCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCeEEEEE---
Q 004594 525 DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW--------CTESFTVKSTL--- 593 (743)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IW--------d~~t~~~~~~l--- 593 (743)
++-+....++.+.+.. ..+..+..+..|.-.-..+.|.+||+.++.+.. -|..- |+++.++..++
T Consensus 133 ndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~ 208 (366)
T COG3490 133 NDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDA 208 (366)
T ss_pred CCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEec
Confidence 3334444444444443 334566777778777788999999999888752 23332 33333322111
Q ss_pred ------c-------cCCCCEEEEEEcCCCCEEEEEeCCCe----EEEEECCCCCeeEEEEe-------cCCCCeEEEEEe
Q 004594 594 ------E-------EHTQWITDVRFSPSLSRLATSSADRT----VRVWDTENPDYSLRTFT-------GHSTTVMSLDFH 649 (743)
Q Consensus 594 ------~-------~H~~~V~~l~fspd~~~L~Sgs~Dg~----V~vWDl~~~~~~l~~l~-------gh~~~V~sl~fs 649 (743)
+ .+.-.|..++..+|++.++-|-..|- --+--...+..++..+. .....|-+|+.+
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 1 23345777888777776665543221 11111111111122221 122457788888
Q ss_pred cCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEEE
Q 004594 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 650 pdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~vh 706 (743)
.+...+.+|+-..+..-+||..+|..+.........-+.+...-+++.+.+|.+.+.
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEec
Confidence 777777778877888999999999987766655544455555556666667766653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.81 Score=52.88 Aligned_cols=110 Identities=8% Similarity=0.028 Sum_probs=67.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~------~V~--~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~g 638 (743)
+..++.++.|+.|...|..+++.+-.+..... .+. .+.+. ++..++.++.++.|+.+|.++++. +..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 44577777789999999999887766543222 010 01111 226788888999999999999875 444432
Q ss_pred CCCC-----e-EEEEEecCCCeEEEEEe---------CCCcEEEEECCCCeEEEEEec
Q 004594 639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 639 h~~~-----V-~sl~fspdg~~llaSgs---------~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
.... + .+..+.. ..++ .++ .++.|..+|..+|+.+..+..
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 2110 1 1122222 2233 332 467899999999998877754
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.49 E-value=4.3 Score=44.01 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEcc----C-CCCEEEEEEcCCCCEEEEEeC-----------CCeE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----H-TQWITDVRFSPSLSRLATSSA-----------DRTV 621 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~----H-~~~V~~l~fspd~~~L~Sgs~-----------Dg~V 621 (743)
+.++..-..+..|+++. .-+.+++.+++..+..+.. . .....++...|+|.+.++... -|.|
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 44444444444555553 3466677765555333221 1 244567888999887665443 1334
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--C----eEEEEEec-----cCceeeecC
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--G----SCAGVFKV-----CNLMPIILK 690 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t--g----~~v~~~~~-----~~~i~~s~~ 690 (743)
+.+|. .+.. ++.+..|-..-+.|+|+||+..++++=+..+.|+-|++.. + +....+.. ...+++..+
T Consensus 146 yr~~p-~g~~-~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 146 YRVDP-DGGV-VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred EEEcC-CCCE-EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 44443 2332 5555555666789999999988887777778898888762 2 11111111 245788888
Q ss_pred CCEEEEEecCC-eEEEEecc
Q 004594 691 GCFILNSIFNC-YLLLHRIF 709 (743)
Q Consensus 691 g~~L~sgs~Dg-~v~vh~~~ 709 (743)
|++.+++..+| .|.+++..
T Consensus 224 G~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCEEEecccCCceEEEECCC
Confidence 88886665554 56554433
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.14 Score=58.44 Aligned_cols=117 Identities=10% Similarity=0.091 Sum_probs=79.1
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC-----CeEEEEEccC---CCC--EEEEEEcCCCCEEEEEeCCCeE
Q 004594 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTES-----FTVKSTLEEH---TQW--ITDVRFSPSLSRLATSSADRTV 621 (743)
Q Consensus 556 ~~V~~i~fspd----g~~LaSgs~Dg~V~IWd~~t-----~~~~~~l~~H---~~~--V~~l~fspd~~~L~Sgs~Dg~V 621 (743)
..|..+.|.|- ...+...-..+.|.||-+.- .+.+..-..+ .-+ --.+.|||....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34999999983 33455666788999998752 2222211111 111 1245699998888777666666
Q ss_pred EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 622 ~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
.+++++.....++.-....+.|.|.||..||..++++.+..-.-+|||-..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 677776655545554456788999999999999888877776778898543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.61 Score=42.47 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=47.9
Q ss_pred EEEEEEcC---C-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 600 ITDVRFSP---S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 600 V~~l~fsp---d-~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
|+++++.. + .+.|++|+.|..||+|+-. ..+..+.. .+.|++++-...+ .|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCc
Confidence 56666654 3 2579999999999999854 34666664 4568888776653 47778889999999753
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.72 Score=54.29 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=78.8
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEc-cCCCCEEEEEEc--CCCCEEEEEeCCCe
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRT 620 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~-~H~~~V~~l~fs--pd~~~L~Sgs~Dg~ 620 (743)
.+....++...-..+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |++..+++.+....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 344445555444555666666655554444445669999998866432221 346789999995 47888888899999
Q ss_pred EEEEECC-----CCC---eeEEE--EecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 621 VRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 621 V~vWDl~-----~~~---~~l~~--l~gh~-~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
|.+|--. +.. .+++. +..|+ .+|.+.+|.++|. ++ .|+ +..+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 9998531 111 11222 33444 5799999999985 33 333 3578888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=60.52 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEE---EcCCCCEEEEEeCCCeEEEEEC
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR---FSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 554 H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~---fspd~~~L~Sgs~Dg~V~vWDl 626 (743)
-.++|++++|+.+|++++.|-.+|.|.+||+..++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 457899999999999999999999999999999999998888776655543 3445557888877776 5554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.077 Score=63.93 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 004594 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~-~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~ 644 (743)
-+..++.|+..|.|-..|+... .+...=+.-.++|++++|+.+|.+++.|-.+|.|.+||+.+++. ++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3457888888888988887642 11111122357899999999999999999999999999998664 777766666555
Q ss_pred EEE---EecCCCeEEEEEeCCCcEEEEEC
Q 004594 645 SLD---FHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 645 sl~---fspdg~~llaSgs~Dg~IrvWDl 670 (743)
++- +..++. .+.++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 334444 5557766664 7764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.22 Score=56.14 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCE-------EEEEeCCCcEEEEECCC-Ce-EEEEEccCC----CCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 558 VESCHFSPDGKL-------LATGGHDKKAVLWCTES-FT-VKSTLEEHT----QWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 558 V~~i~fspdg~~-------LaSgs~Dg~V~IWd~~t-~~-~~~~l~~H~----~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
|.-+.+.|+.+. -+.|-.|+.|.-||.+- ++ .+....+|. ....|.+-.. ..+||.|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-CceEEEeecCCcEEee
Confidence 555556664431 34566788999999874 22 233333332 2344554433 4589999999999999
Q ss_pred ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 625 Dl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
|- .+......+.+-..+|..|+.+-+|.++|+|| +..+-+.|+.
T Consensus 457 dr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 457 DR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred hh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 96 44444567788889999999999999999887 4677777764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=6.1 Score=42.03 Aligned_cols=190 Identities=13% Similarity=0.092 Sum_probs=112.1
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 004594 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 552 ~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H-~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~ 630 (743)
.+-+..|.++.|+|+.+.|++......-.||=...|+.++++.-. -.....|.|..++.++++--.+..+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344555999999999998888888888888877778988877421 1223456777677777777778888888776543
Q ss_pred ee---------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE---EEE-----------EeccCceee
Q 004594 631 YS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGV-----------FKVCNLMPI 687 (743)
Q Consensus 631 ~~---------l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~---v~~-----------~~~~~~i~~ 687 (743)
.. +..........-.++|.|....++++= +-.=++||.+..+.. ++. +...+++.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 21 111222245677899999987676543 344566665543220 111 112233455
Q ss_pred ec-CCCEEEEEecCCeEEEEecccce---EEEeec-------CCCCEEEEEeCCCcEEEeCCCccc
Q 004594 688 IL-KGCFILNSIFNCYLLLHRIFLNL---LSVSEW-------CNPDEISTSSWKDSCCSHRELYLY 742 (743)
Q Consensus 688 s~-~g~~L~sgs~Dg~v~vh~~~v~~---l~vs~~-------~~~~~laSgs~DG~V~iWd~~~l~ 742 (743)
.+ .+..++-+.+++.+..-+....+ +..... -+.-.=++...+|.++|-.+..+|
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnlf 306 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNLF 306 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCcc
Confidence 54 34445555555554443333322 222111 112244667788888888776665
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.26 Score=55.50 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=85.4
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCe-eEEEE
Q 004594 566 DGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLRTF 636 (743)
Q Consensus 566 dg~~-LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~-------~L~Sgs~Dg~V~vWDl~~~~~-~l~~l 636 (743)
+.++ |.++..-..++-.|++.|+.+..+.-|.. |.-+.+.|+.+ .-+.|-.|..|.-||.|-... .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4444 44555667788889999999999988777 88888888643 235566799999999985443 23333
Q ss_pred ecCC----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec----cCceeeecCCCEEEEEecC
Q 004594 637 TGHS----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 637 ~gh~----~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~L~sgs~D 700 (743)
.+|. ....|.+-. +...+|.||.+|.||+||--.......+.+ ...+.++.+|+||+.....
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3332 123333333 344678999999999999732222223332 2346678899998766544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.98 Score=48.92 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 004594 557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 625 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~---------Dg~V~IWd~~-t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-Dg~V~vWD 625 (743)
.-+.+.+.|+|.+.++... -..-.||.++ .+..++.+..|-..-..|+|+||++.|+.+.. .+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 3567788889987766544 1122466665 56666666666666678999999988877765 58888887
Q ss_pred CCC--C----CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEecc
Q 004594 626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 626 l~~--~----~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D-g~IrvWDl~tg~~v~~~~~~ 682 (743)
+.. + ......+..+.+..-.++...+|. +.+++..+ +.|.+|+.. |+.+..+...
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECC
Confidence 752 1 111222323446666778888876 44333333 389999998 8888888764
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.086 Score=53.59 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-eEEEEEccCCCCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CC
Q 004594 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 642 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~-~~~~~l~~H~~~V~~l~fs-pd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~-~~ 642 (743)
-+..+++|+.||.|.+|+..-. .....+..-...|.|+--. .++.+.++++.||.||.|++.-.+. +.....|. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence 3457899999999999987621 1111111112333333222 2455889999999999999886543 44444454 33
Q ss_pred eEEEEEecCCCeEEEEE--eCCCcEEEEECCC
Q 004594 643 VMSLDFHPSKEDLLCSC--DNNSEIRYWSINN 672 (743)
Q Consensus 643 V~sl~fspdg~~llaSg--s~Dg~IrvWDl~t 672 (743)
+..+.....++ +++.+ |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 33333333322 33344 5566666666553
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.9 Score=44.50 Aligned_cols=181 Identities=18% Similarity=0.107 Sum_probs=91.7
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcC-----CC---CEEEEEeCCCc
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-----DG---KLLATGGHDKK 578 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-----dg---~~LaSgs~Dg~ 578 (743)
-|++.|..+|.+.+.+.....-.... .+.+ ...-......|+++.|+- |+ -++++|...|.
T Consensus 98 GFvaigy~~G~l~viD~RGPavI~~~--~i~~---------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 98 GFVAIGYESGSLVVIDLRGPAVIYNE--NIRE---------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEE--EGGG-----------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEEEEEecCCcEEEEECCCCeEEeec--cccc---------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 48999999999999977333111000 0000 001112345678888863 33 37889999999
Q ss_pred EEEEECC--C-Ce----EEEEEccCCCCEEEEE-EcCC-C-------------------CEEEEEeCCCeEEEEECCCCC
Q 004594 579 AVLWCTE--S-FT----VKSTLEEHTQWITDVR-FSPS-L-------------------SRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 579 V~IWd~~--t-~~----~~~~l~~H~~~V~~l~-fspd-~-------------------~~L~Sgs~Dg~V~vWDl~~~~ 630 (743)
+.+|.+. . +. .......|.+.|..+. |+.+ + ..++....+..|||+..-+.+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 9999764 1 21 1122224556666655 3222 1 224445558899999988766
Q ss_pred eeEEEEecCCCCeEEEEEec----CCCeEEEEEeCCCcEEEEECCCCeEEEEEecc--------CceeeecCCCEEEEEe
Q 004594 631 YSLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC--------NLMPIILKGCFILNSI 698 (743)
Q Consensus 631 ~~l~~l~gh~~~V~sl~fsp----dg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~--------~~i~~s~~g~~L~sgs 698 (743)
..-+.+ ...-.+..+++-+ .+...|++-..||.|++|.+-.-+.+..+... ...+++.+|..++..+
T Consensus 247 ~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 247 GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 533344 2222333445531 23456777788999999999988888777753 2355666776554443
Q ss_pred c
Q 004594 699 F 699 (743)
Q Consensus 699 ~ 699 (743)
.
T Consensus 326 p 326 (395)
T PF08596_consen 326 P 326 (395)
T ss_dssp S
T ss_pred c
Confidence 3
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.9 Score=51.03 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCEEEEEeCC-CcEEEE-----------ECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE--
Q 004594 558 VESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV-- 623 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~D-g~V~IW-----------d~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~v-- 623 (743)
.++-.|+|||+.|++.+.. ..+++. +++.++... ...+.|..++|+|||.+|+... ++.|+|
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 7788999998888777543 223333 333222211 2356799999999999887655 577777
Q ss_pred -EECCCCCeeE---EEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 004594 624 -WDTENPDYSL---RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 624 -WDl~~~~~~l---~~l~-gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl 670 (743)
-....+...+ ..+. +-...+.+++|..++. |+ .+..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEE
Confidence 3333333212 1122 2333468899999977 44 3333444445543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.11 Score=39.93 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~ 588 (743)
..|.+++|+|...+||.|..||.|.||.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 45999999999999999999999999998 444
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.8 Score=50.64 Aligned_cols=82 Identities=26% Similarity=0.331 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeE---EEEE--------ccCCCCEEEEEEcCC---CCEE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES---------FTV---KSTL--------EEHTQWITDVRFSPS---LSRL 612 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t---------~~~---~~~l--------~~H~~~V~~l~fspd---~~~L 612 (743)
-.|..|.++|+|++||..|..+.+.+.=.+. ++. .+++ ..+...|..++|||. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588899999999999999877554432211 111 1111 134567999999995 5788
Q ss_pred EEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 613 ATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 613 ~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
+.-..|+++|+||+.....+..++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 8888999999999987665554443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.73 Score=48.44 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=46.5
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCC-CeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 004594 562 HFSPDGKLLATGGHD-----KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (743)
Q Consensus 562 ~fspdg~~LaSgs~D-----g~V~IWd~~t-~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vW 624 (743)
.|||||++|+..-.| |.|-|||.+. ...+..+..|.-.-..+.|.+||+.++.+ +|-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecc
Confidence 589999999877554 7899999875 34566777787777889999999998877 3434433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.13 Score=52.35 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
..-+.+|+.|+.|.+|..+--....+. +. .-...|.| |.--.++.+.++++.|+.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~---------------~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR---------------VC---SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh---------------hh---cccccceeccccccccceeEEeccCCceeeecc
Confidence 356789999999999966521110000 00 01111222 222235668999999999999999
Q ss_pred CCCeEEEEEccCC-CCEEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 004594 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (743)
Q Consensus 585 ~t~~~~~~l~~H~-~~V~~l~fspd~~~L~Sg--s~Dg~V~vWDl~~ 628 (743)
.-.+.+.....|+ ..+........++.|+.+ +.|..++.|++..
T Consensus 132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9888887777777 556666566666777777 7788888888764
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.20 E-value=5.6 Score=44.95 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=36.7
Q ss_pred cEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 578 ~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
.|.||+.. |+.+..+.-..+.|.++.|..+.. |+.-..||++++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 48899865 566666654458999999988654 5555689999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.6 Score=46.74 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Ce--EEEEEccCCCCEEEEEEcCCCCEEEEEeCCCe
Q 004594 557 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs-----------~Dg-~V~IWd~~t--~~--~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~ 620 (743)
....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ +++ ++.+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 467899999999877753 223 676665332 22 233444344556889999888 444 444544
Q ss_pred EEEEECCCC-----C--eeEEEEec----CCCCeEEEEEecCCCeEEEEEeC------------------CCcEEEEECC
Q 004594 621 VRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN 671 (743)
Q Consensus 621 V~vWDl~~~-----~--~~l~~l~g----h~~~V~sl~fspdg~~llaSgs~------------------Dg~IrvWDl~ 671 (743)
+++.|.... . ..+..+.. +...+..++|.|+|..+++.++. .+.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 445455321 1 11222322 12447789999998644433321 0345555555
Q ss_pred CCeEEEEEecc---CceeeecCCCEEEEEe
Q 004594 672 NGSCAGVFKVC---NLMPIILKGCFILNSI 698 (743)
Q Consensus 672 tg~~v~~~~~~---~~i~~s~~g~~L~sgs 698 (743)
+++......+. ..++|+++|.++++-.
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 54432222222 3588889988876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.83 E-value=9.9 Score=39.84 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------EccCCCCEEEEE--EcCCCCEEEEEeCCCeE
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV 621 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~--------------l~~H~~~V~~l~--fspd~~~L~Sgs~Dg~V 621 (743)
|..+...++-+.|++-+ |+.+.++++........ .......|..++ -...+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 88999988777666655 59999999876443321 111233444444 11233333334445588
Q ss_pred EEEECCCCC----eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 004594 622 RVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 622 ~vWDl~~~~----~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.+|...... ..++.+. ....+.+++|..+ .++.|. .....+.|+.++.....+
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCCCceEEe
Confidence 888876531 2345554 4477899999943 454555 345889999977654443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.62 E-value=2.1 Score=50.48 Aligned_cols=137 Identities=11% Similarity=0.085 Sum_probs=74.3
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--EEccCCCCEEEEEEcCCCCEEEEEeCCCe-----EEEEEC
Q 004594 560 SCHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRT-----VRVWDT 626 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~D------g~V~IWd~~t~~~~~--~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~-----V~vWDl 626 (743)
++++. ++.+.++|+.| .+|..||.++.+-.. .+...........+ +|.+.++|+.||. |-.||.
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 34443 56788899988 456777777655322 12122222222222 5778889998865 778888
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC------cEEEEECCCCeEEEEEecc----CceeeecCCCEEEE
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS------EIRYWSINNGSCAGVFKVC----NLMPIILKGCFILN 696 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg------~IrvWDl~tg~~v~~~~~~----~~i~~s~~g~~L~s 696 (743)
++....... .+...........-+..+++.||.|+ +|..||..+++....-... ..-....++...+.
T Consensus 404 ~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv 481 (571)
T KOG4441|consen 404 VTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV 481 (571)
T ss_pred CCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE
Confidence 775532111 11112222222222345777787554 4678888877654322211 11134456777778
Q ss_pred EecCC
Q 004594 697 SIFNC 701 (743)
Q Consensus 697 gs~Dg 701 (743)
|+.|+
T Consensus 482 GG~~~ 486 (571)
T KOG4441|consen 482 GGFDG 486 (571)
T ss_pred CCccC
Confidence 88776
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.17 Score=55.81 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 004594 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 564 spdg~~LaSgs---------~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~ 634 (743)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.|+-.. ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 56777766632 246788999998765543333 56788999999999988775 78999999876543222
Q ss_pred EEecC----------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 004594 635 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 635 ~l~gh----------------~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl 670 (743)
+..|- -+.-.++-|+||+..+++.--.+..|+.+.+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 22220 1123568899999987776666666666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.54 E-value=7.8 Score=40.63 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=77.2
Q ss_pred CCCEEEEEeCCCcEEEEECC-CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE---------
Q 004594 566 DGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------- 635 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~-t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~--------- 635 (743)
.++.|+.|.++| |.+++.. ..+..... +...|..+...++-+.+++-+ |+.|+++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 578899999998 8999983 33333333 333499999999866665554 699999998754321100
Q ss_pred ----EecCCCCeEEEE--EecCCCeEEEEEeCCCcEEEEECCCC-----eEEEEEeccC---ceeeecCCCEEEEEecCC
Q 004594 636 ----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKVCN---LMPIILKGCFILNSIFNC 701 (743)
Q Consensus 636 ----l~gh~~~V~sl~--fspdg~~llaSgs~Dg~IrvWDl~tg-----~~v~~~~~~~---~i~~s~~g~~L~sgs~Dg 701 (743)
.......+..++ -...+...|+.+- ..+|.+|..... +..+.+.... .+.|. +..|+.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence 111223344444 1123334444443 558888877653 3445554432 23333 66777776666
Q ss_pred eEEE
Q 004594 702 YLLL 705 (743)
Q Consensus 702 ~v~v 705 (743)
...+
T Consensus 159 f~~i 162 (275)
T PF00780_consen 159 FYLI 162 (275)
T ss_pred eEEE
Confidence 5544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.40 E-value=9 Score=40.22 Aligned_cols=145 Identities=12% Similarity=0.038 Sum_probs=83.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCeeEE
Q 004594 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYSLR 634 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs-~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWD-l~~~~~~l~ 634 (743)
.+...++++++..+|... .++.-.||-...+.....+. -...+..-.|++++...+....+..++++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 588999999999777655 23333333333333332221 223678889999977777766677777774 333332122
Q ss_pred EEecC--CCCeEEEEEecCCCeEEEEEe--CCCcEEEEECC---CC--e----EEEEE----eccCceeeecCCCEEEEE
Q 004594 635 TFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN---NG--S----CAGVF----KVCNLMPIILKGCFILNS 697 (743)
Q Consensus 635 ~l~gh--~~~V~sl~fspdg~~llaSgs--~Dg~IrvWDl~---tg--~----~v~~~----~~~~~i~~s~~g~~L~sg 697 (743)
..... ...|.++.++|||..+.+... .++.|.|=-+. .+ . .+... .....+.|..++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 22111 128999999999998766552 34666665543 22 0 11111 112347788888877766
Q ss_pred ecCCe
Q 004594 698 IFNCY 702 (743)
Q Consensus 698 s~Dg~ 702 (743)
...+.
T Consensus 184 ~~~~~ 188 (253)
T PF10647_consen 184 RSAGG 188 (253)
T ss_pred CCCCC
Confidence 55443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.34 E-value=3.2 Score=46.60 Aligned_cols=117 Identities=9% Similarity=0.150 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeEEEEEccCC--CCEEEEEEcC--CCCE-
Q 004594 557 KVESCHFSPDGKLLATGGH--------------------DKKAVLWCTESFTVKSTLEEHT--QWITDVRFSP--SLSR- 611 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~--------------------Dg~V~IWd~~t~~~~~~l~~H~--~~V~~l~fsp--d~~~- 611 (743)
.-+++.|.|..+.++|... ..++.+||+.+.+.+.++.--. ..+..|+|.. +..+
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 3567778887778877654 3689999999999998886432 2356777754 3333
Q ss_pred EEEEeCCCeEEEEE-CCCCCee---EEEEec-----------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 004594 612 LATSSADRTVRVWD-TENPDYS---LRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 612 L~Sgs~Dg~V~vWD-l~~~~~~---l~~l~g-----------------h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl 670 (743)
|+.+.....|..|- .+.+... +..+.. -..-|+.|..+.|.++|++++-.+|.||.||+
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence 44444455555543 2333321 111111 02458999999999999999999999999999
Q ss_pred CCC
Q 004594 671 NNG 673 (743)
Q Consensus 671 ~tg 673 (743)
...
T Consensus 342 SDP 344 (461)
T PF05694_consen 342 SDP 344 (461)
T ss_dssp SST
T ss_pred CCC
Confidence 763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.32 E-value=4.1 Score=44.87 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCeEEEEEcc-CCCCE---EEEEEc-CCC-CEEEEEeCCCeEEE
Q 004594 555 TSKVESCHFSPDGKLLAT--GGHDK---KAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSL-SRLATSSADRTVRV 623 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaS--gs~Dg---~V~IWd~~t~~~~~~l~~-H~~~V---~~l~fs-pd~-~~L~Sgs~Dg~V~v 623 (743)
...+..+.|.++++.|+. ...+. .+.++|+.++.+...++. ....| ..+.|. +++ .+|.....||.-+|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 445788999999883333 33332 356667776654433332 22222 245554 554 45555667887776
Q ss_pred EECCCCCeeEEEEecCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEec---cC-ceeeecCCCEE
Q 004594 624 WDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKV---CN-LMPIILKGCFI 694 (743)
Q Consensus 624 WDl~~~~~~l~~l~gh~~~V~s-l~fspdg~~llaSgs~Dg----~IrvWDl~tg~~v~~~~~---~~-~i~~s~~g~~L 694 (743)
|-++........+....-.|.. +.|++++..+++++..+. .|..-++..+..+..+.. .. .+.|+|+|+++
T Consensus 263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEE
Confidence 6555444335566655556755 678888888888887643 455556662333444443 33 57788999887
Q ss_pred EEEe
Q 004594 695 LNSI 698 (743)
Q Consensus 695 ~sgs 698 (743)
+...
T Consensus 343 v~~~ 346 (353)
T PF00930_consen 343 VDTY 346 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.09 E-value=11 Score=41.09 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=46.8
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEccCCC-------CEEEEEEcCCCCEEEEEeC--CCe
Q 004594 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 620 (743)
Q Consensus 560 ~i~fspdg~~LaSgs----------~Dg~V~IWd~~t~~~~~~l~~H~~-------~V~~l~fspd~~~L~Sgs~--Dg~ 620 (743)
-+..+||++.+++++ ..-.|.+||..+..+...+.--.. ....++++.|+++++.... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366789999888753 345799999999877765532221 1223577788887766543 567
Q ss_pred EEEEECCCCCe
Q 004594 621 VRVWDTENPDY 631 (743)
Q Consensus 621 V~vWDl~~~~~ 631 (743)
|.|-|+...+.
T Consensus 120 VtVVDl~~~kv 130 (342)
T PF06433_consen 120 VTVVDLAAKKV 130 (342)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCce
Confidence 88888886553
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.78 Score=56.00 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEE-----E------EEccCCCCEEEEEEcCC-CCEEEEEeCCCeEE
Q 004594 557 KVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVK-----S------TLEEHTQWITDVRFSPS-LSRLATSSADRTVR 622 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSg--s~Dg~V~IWd~~t~~~~-----~------~l~~H~~~V~~l~fspd-~~~L~Sgs~Dg~V~ 622 (743)
+|..+...+|+...++. +.+-.|.+||+++.... + +.......+.|+.|+|. ....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34455556676654443 34457889998763221 1 12223456788999996 33467777899999
Q ss_pred EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
|..+......+..+. -...+++++|+|.|..++ .|-..|++.-|...
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceee-EecCCCeEEEeecc
Confidence 988765433233332 446789999999988554 78888998888654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.044 Score=64.67 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=78.6
Q ss_pred EeeCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--CeEEEEE-----ccCCCCEEEEEEcC---CCCEEEEEeCC
Q 004594 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES--FTVKSTL-----EEHTQWITDVRFSP---SLSRLATSSAD 618 (743)
Q Consensus 550 ~l~~H~~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t--~~~~~~l-----~~H~~~V~~l~fsp---d~~~L~Sgs~D 618 (743)
.+++..+.|-.++|-. +...++ -.-|...|||++- |+....+ ......+.-|.|+| +.-+++.+..+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456777888888844 333333 3346788998763 3322222 22234456677776 45677788889
Q ss_pred CeEEEEECCCCCeeEEEEecCCCCeEEEE-----------EecCCCeEEEEEeCCCcEEEEECC-----CCeEEEEEecc
Q 004594 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKVC 682 (743)
Q Consensus 619 g~V~vWDl~~~~~~l~~l~gh~~~V~sl~-----------fspdg~~llaSgs~Dg~IrvWDl~-----tg~~v~~~~~~ 682 (743)
++|++..+.+.. ...|.+|..++..++ .+|||. +|++.+.||.+++|-+- ...|.+.++.|
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999988876533 244556777666654 467776 66677778888887653 23455555544
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.51 E-value=11 Score=43.94 Aligned_cols=109 Identities=5% Similarity=-0.051 Sum_probs=66.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~-~~V~---~-------l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~ 635 (743)
+..|+.++.++.|.-.|..+++.+-.+.... ..+. + +++ .+..++.++.|+.|...|.++++. +..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-VWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 4567777778899999999998877654211 1111 1 122 235677888899999999999886 332
Q ss_pred Ee--cCCC--CeEE-EEEecCCCeEEEEEe-----CCCcEEEEECCCCeEEEEEe
Q 004594 636 FT--GHST--TVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 636 l~--gh~~--~V~s-l~fspdg~~llaSgs-----~Dg~IrvWDl~tg~~v~~~~ 680 (743)
+. .+.. .+.+ -... ++ .+++..+ .+|.|+.+|+++|+.+..+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 22 1110 1111 1111 22 3443322 36899999999998876554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=3.5 Score=48.54 Aligned_cols=130 Identities=7% Similarity=0.021 Sum_probs=64.6
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEE--EEccCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCee
Q 004594 566 DGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS 632 (743)
Q Consensus 566 dg~~LaSgs~D------g~V~IWd~~t~~~~~--~l~~H~~~V~~l~fspd~~~L~Sgs~Dg-----~V~vWDl~~~~~~ 632 (743)
++.+++.||.+ ..|..||..+..-.. .+.........+.+ ++++.+.|+.++ +|.+||..+....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777777754 346778877654321 11111111222222 466777887754 4888998875431
Q ss_pred E-EEEecCCCCeEEEEEecCCCeEEEEEeCCC-----------------------cEEEEECCCCeEEEEEec--c--Cc
Q 004594 633 L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----------------------EIRYWSINNGSCAGVFKV--C--NL 684 (743)
Q Consensus 633 l-~~l~gh~~~V~sl~fspdg~~llaSgs~Dg-----------------------~IrvWDl~tg~~v~~~~~--~--~~ 684 (743)
. ..+.........+.+ + ..+++.||.++ .|..||.++.+....-.. . ..
T Consensus 381 ~~~~mp~~r~~~~~~~~--~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred ECCCCCcccccccEEEE--C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 1 111111111122222 2 45777777552 477788887654322211 1 11
Q ss_pred eeeecCCCEEEEEecC
Q 004594 685 MPIILKGCFILNSIFN 700 (743)
Q Consensus 685 i~~s~~g~~L~sgs~D 700 (743)
.....+++..+.|+.+
T Consensus 458 ~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 458 GVVSHKDDIYVVCDIK 473 (557)
T ss_pred cEEEECCEEEEEeCCC
Confidence 2234556666666654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.38 Score=36.87 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004594 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (743)
Q Consensus 597 ~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~ 627 (743)
...|.+++|+|..++||.+..||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=16 Score=44.20 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC-C-----CeEEEEEC
Q 004594 558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDT 626 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~-----Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~-D-----g~V~vWDl 626 (743)
+..+.|+|||++|+.+.+ ...|++.|+.+++.+........ ..++|.+|++.|+.+.. + ..|++|++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 667889999998886543 24588888887763322211211 46899998876644433 2 36888888
Q ss_pred CCCC-eeEEEEecCCCCeEEEEEec-CCCeEEEEEe--CCCcEEEEEC
Q 004594 627 ENPD-YSLRTFTGHSTTVMSLDFHP-SKEDLLCSCD--NNSEIRYWSI 670 (743)
Q Consensus 627 ~~~~-~~l~~l~gh~~~V~sl~fsp-dg~~llaSgs--~Dg~IrvWDl 670 (743)
.++. .....+........-..+.+ ++..+++.+. .++.+.+|+.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8762 11334443333333223334 6776665443 3467888885
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.5 Score=51.69 Aligned_cols=110 Identities=9% Similarity=0.058 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCC-----------------------cEEEEECCCCeEEE--EEccCCCCEEEEEEcCCCCEEEEEeCC--
Q 004594 566 DGKLLATGGHDK-----------------------KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD-- 618 (743)
Q Consensus 566 dg~~LaSgs~Dg-----------------------~V~IWd~~t~~~~~--~l~~H~~~V~~l~fspd~~~L~Sgs~D-- 618 (743)
+|++.+.|+.++ .|..||..+.+-.. .+.........+.+ ++++.+.|+.+
T Consensus 398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~ 475 (557)
T PHA02713 398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDE 475 (557)
T ss_pred CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCC
Confidence 677777787653 46678876644321 11111111112222 45666777654
Q ss_pred ----CeEEEEECCC-CCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEe
Q 004594 619 ----RTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK 680 (743)
Q Consensus 619 ----g~V~vWDl~~-~~~-~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg--~IrvWDl~tg~~v~~~~ 680 (743)
..|..||..+ ... .+..+.........+.+ +..+++.|+.|+ .+-.||..+.+......
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 2467899887 443 23333333333333333 346888999888 77788888776544333
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=5 Score=47.40 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCeEEEEEccCCCCEEEEEEcC-CCCEEEEEeCC------CeEEEEECCCCCeeE
Q 004594 566 DGKLLATGGHDKK-----AVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSAD------RTVRVWDTENPDYSL 633 (743)
Q Consensus 566 dg~~LaSgs~Dg~-----V~IWd~~t~~~~~~l~~H~~~V~~l~fsp-d~~~L~Sgs~D------g~V~vWDl~~~~~~l 633 (743)
+|.+.|+|+.||. |-.||.++.+-.. ...+........... ++.+.++|+.| .+|..||..+.....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccc-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 7888999999864 5566665533211 111111222222222 56777888754 457788888765311
Q ss_pred E-EEecCCCCeEEEEEecCCCeEEEEEeCCCc-----EEEEECCCCeEEEEE--ecc--CceeeecCCCEEEEEecCCeE
Q 004594 634 R-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVF--KVC--NLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 634 ~-~l~gh~~~V~sl~fspdg~~llaSgs~Dg~-----IrvWDl~tg~~v~~~--~~~--~~i~~s~~g~~L~sgs~Dg~v 703 (743)
. .+..-.... .++.- +..+++.||.|+. |..||.++.+....- +.. ..-....++...++|+.|+.-
T Consensus 459 ~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 459 IAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred cCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 1 111111111 23332 2457888887763 778998877654432 111 112244566777788887765
Q ss_pred EE
Q 004594 704 LL 705 (743)
Q Consensus 704 ~v 705 (743)
.+
T Consensus 536 ~l 537 (571)
T KOG4441|consen 536 NL 537 (571)
T ss_pred cc
Confidence 54
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.14 E-value=9.1 Score=42.45 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=54.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CeE--E-EEEcc----CCCCEEEEEEcCCCCEEEEEeCC----
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTV--K-STLEE----HTQWITDVRFSPSLSRLATSSAD---- 618 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t-----~~~--~-~~l~~----H~~~V~~l~fspd~~~L~Sgs~D---- 618 (743)
....+.++|.++| +++ ++.+...++.|.+. ++. + ..+.. +...+..++|.||+.+.++-+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3346789998888 444 44454444445432 121 1 11222 13447789999998876655421
Q ss_pred ---------------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 004594 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 619 ---------------g~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaS 658 (743)
+.|.-+|..... +..+.........++|+++|. ++++
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G~-l~~t 200 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWGD-VFFC 200 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCCC-EEEE
Confidence 445555655433 233322223357899999986 4444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.14 E-value=33 Score=41.94 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=68.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFS----------------PSLSRLATSSADRTVR 622 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~--------V~~l~fs----------------pd~~~L~Sgs~Dg~V~ 622 (743)
+..|+.++.++.|.-.|..+++.+-.+.-.... +..+.+. .++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888899888887766432210 1122332 1345788888999999
Q ss_pred EEECCCCCeeEEEEecCCCCeE-------------EEEEec--CCCeEEEEEeC----------CCcEEEEECCCCeEEE
Q 004594 623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCDN----------NSEIRYWSINNGSCAG 677 (743)
Q Consensus 623 vWDl~~~~~~l~~l~gh~~~V~-------------sl~fsp--dg~~llaSgs~----------Dg~IrvWDl~tg~~v~ 677 (743)
-.|.++++.| ..|. ..+.|. .+.-.| .+..++ .++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999998874 3332 111110 011111 022233 4432 6889999999999887
Q ss_pred EEe
Q 004594 678 VFK 680 (743)
Q Consensus 678 ~~~ 680 (743)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=90.84 E-value=31 Score=38.46 Aligned_cols=147 Identities=14% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 506 ~~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~i~fspdg~~LaSgs~Dg~V~IWd~ 584 (743)
+++|..+..|+.-.+|...-. . .++..|..+. .......++|+.+.|+-...++.|+..|+
T Consensus 48 ~kllF~s~~dg~~nly~lDL~--------------t----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLA--------------T----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred CEEEEEeccCCCcceEEEEcc--------------c----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 377788888888777743211 1 1222222222 22224556788888776666778999999
Q ss_pred CCCeEEEEEccCCCCEEEEEEc--CCCCEEEEEeC---C-------------------CeEEEEECCCCCeeEEEEecCC
Q 004594 585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA---D-------------------RTVRVWDTENPDYSLRTFTGHS 640 (743)
Q Consensus 585 ~t~~~~~~l~~H~~~V~~l~fs--pd~~~L~Sgs~---D-------------------g~V~vWDl~~~~~~l~~l~gh~ 640 (743)
++.+....+......+-...|. .++..++-.-. | ..|...|+.++. ..++..-.
T Consensus 110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~ 187 (386)
T PF14583_consen 110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDT 187 (386)
T ss_dssp TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES
T ss_pred CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecC
Confidence 9988777777677777656664 35555433211 1 235555666655 34444456
Q ss_pred CCeEEEEEecCCCeEEEEEeC---CC-cEEEEECCC
Q 004594 641 TTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN 672 (743)
Q Consensus 641 ~~V~sl~fspdg~~llaSgs~---Dg-~IrvWDl~t 672 (743)
..+..+.|+|..+.+|+-|-+ |. .-|||-+++
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 778999999998888887753 22 237776654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=90.66 E-value=3 Score=46.98 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=65.2
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec-C-----------------
Q 004594 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-S----------------- 651 (743)
Q Consensus 590 ~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fsp-d----------------- 651 (743)
...+......+.+|..+|++.+.++.+.=|.|.++|+.++.. ++.++|..+.=+.--... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 334555566688999999999999988899999999998654 677777665422211111 0
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 004594 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 652 g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
.-.|++-...-|.|.||++++|..+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1135556777899999999999888777653
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.53 E-value=15 Score=37.55 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=63.9
Q ss_pred CEEEEEeCCCcEEEEECC--CCeEEEEEccCCCCEEEEEEcCCCCEEEEEeC---CC---eEEEE-ECCCC---CeeEE-
Q 004594 568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DR---TVRVW-DTENP---DYSLR- 634 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~--t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~---Dg---~V~vW-Dl~~~---~~~l~- 634 (743)
..|+.+...++|.+|++. ..+.+.+|.. -+.|..+.++..|++|+|--. .. .+|+| +.+.. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444556789999987 3455556643 378999999999999999744 22 67766 22211 11111
Q ss_pred EEecC---------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 004594 635 TFTGH---------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 635 ~l~gh---------------------~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg 673 (743)
.+.|| ...+.+++.+|-..++++.+ ++++.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 22232 23566777788755677444 468999977643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.24 E-value=7.1 Score=42.20 Aligned_cols=115 Identities=15% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~ 632 (743)
+-.+.|..+..++||++++++.......-||--...-...-..-..+|..+.|.|++.+.+.+ ..|.|++=+....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~--- 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD--- 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE---
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC---
Confidence 445779999999999999999877777788754321222222346789999999997776655 8898888772211
Q ss_pred EEEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 004594 633 LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 633 l~~l~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~ 674 (743)
..++.. -.-.+.+++|.++++ ++++|+ .|.| +.....|+
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTS
T ss_pred ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCc
Confidence 122221 112378999998855 666665 4443 33444444
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.84 E-value=9.5 Score=45.66 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=74.9
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEccCCCCEEEEEEc--CCCCEEE
Q 004594 558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA 613 (743)
Q Consensus 558 V~~i~fsp--dg~~LaSgs~Dg~V~IWd~~t-------~-------------~~~~~l~~H~~~V~~l~fs--pd~~~L~ 613 (743)
|+-|.+.. ....|+.|.+||.|.+|.+++ . ++...+. -...++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55555544 556899999999999996632 0 0111222 24568999998 7788899
Q ss_pred EEeCCCeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCC-----CeEEEEEeCCCcEEEEEC
Q 004594 614 TSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 614 Sgs~Dg~V~vWDl~~~--~~~l~~l~gh~~~V~sl~fspdg-----~~llaSgs~Dg~IrvWDl 670 (743)
+++....|.||-.... +.....-..|..-|.+|+|-++. ...+++++-.|.|.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9988888888865431 11111111255678899997753 236778889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=89.79 E-value=34 Score=40.00 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=77.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEccCC-CCEEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeEEEEe
Q 004594 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 567 g~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~-~~V~~l~fsp--d~~~L~Sgs------~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
+..|+.++.|+.|...|.++++.+-...... ..-..+.-.| .+..|+.+. .+|.|+.+|+++++. +..+.
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEecc
Confidence 3467778889999999999999876553211 0001111122 123455543 278999999998775 33221
Q ss_pred cC-------------------------------CCCeE-EEEEecCCCeEEEEEeC----CC-----------cEEEEEC
Q 004594 638 GH-------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSI 670 (743)
Q Consensus 638 gh-------------------------------~~~V~-sl~fspdg~~llaSgs~----Dg-----------~IrvWDl 670 (743)
.- ...|. .+.++|+...+++..+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 00111 23566654433332221 12 5677788
Q ss_pred CCCeEEEEEeccCc-------------eeeecCCC---EEEEEecCCeEEEEe
Q 004594 671 NNGSCAGVFKVCNL-------------MPIILKGC---FILNSIFNCYLLLHR 707 (743)
Q Consensus 671 ~tg~~v~~~~~~~~-------------i~~s~~g~---~L~sgs~Dg~v~vh~ 707 (743)
++|+.+..|..... +.+..+|+ .++.+..+|.+.+.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlD 331 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLD 331 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEE
Confidence 99998877764211 11224665 677777777777744
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.14 E-value=35 Score=36.54 Aligned_cols=120 Identities=13% Similarity=0.232 Sum_probs=77.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------EEc--cC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004594 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-------TLE--EH-TQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 559 ~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~-------~l~--~H-~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~ 628 (743)
..|.|.-+|.++++--.++.+.++.++....+. .+. .+ ......++|.|....|+.+-.-.-+.||.+..
T Consensus 132 E~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 132 ETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred hHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 456666677777776677888777665432111 111 12 44577899999988888888877777776653
Q ss_pred CCee--EEEEecCC-------CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 004594 629 PDYS--LRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 629 ~~~~--l~~l~gh~-------~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.... +.....++ ..|.++.|++....+++-+.+++.|--.|... ..+..+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~l 270 (316)
T COG3204 212 SPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELL 270 (316)
T ss_pred CCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeE
Confidence 3211 11111222 34778899988778998888888888888764 334433
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.09 E-value=45 Score=37.78 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.7
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004594 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 568 ~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl 626 (743)
.+|++=+-||.+.+|+-+..-..+.+.. ---...+.|.+..+.|++++.+..|..|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 5778888899999998776444444433 223345678888889999999999999975
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=28 Score=38.16 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEE-EEECCCCeEEE-EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAV-LWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 555 ~~~V~~i~fspdg~~LaSgs~Dg~V~-IWd~~t~~~~~-~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~ 632 (743)
.+.+.++.+.+++.+++++. .|.+. .+|- .++.-. ....-...++++.+.+++..++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 45689999999987776665 45433 2221 222111 122334678999999988876665 567765322333221
Q ss_pred EEEEec----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 004594 633 LRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 633 l~~l~g----h~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~ 674 (743)
-..... -...+.++.|.+++. +++ ++.+|.|. .....|+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE-EeCCCCC
Confidence 111111 123478899998765 553 44566443 3344333
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.49 E-value=28 Score=36.76 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEEccC-CCCEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeE
Q 004594 558 VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg--~V~IWd~~t~~~~~~l~~H-~~~V~~l~fspd~~~L~Sg-s~Dg~V~vWDl~~~~~~l 633 (743)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++......-. ...-..++... +.|+-- =.++...+||..+... +
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~-~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK-I 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE-E
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE-E
Confidence 45678877888888877655 6899999998876544321 22223344432 334333 3589999999988554 6
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
.++. ..+.-+.++ .++..+++|-+ ...|+++|..+.+.++.+..
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence 6665 345667777 34566776655 55899999998877776654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.12 E-value=11 Score=42.96 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=62.8
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEccCCCCEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 004594 571 ATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (743)
Q Consensus 571 aSgs~Dg~V~IWd~~t-~~~~~~l~~H~~~V~~l~fsp----d~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~s 645 (743)
++|-.+..|.--|.+. +..+.. ......++.-.|+. ...+|+.++..|-||+||--. ......+.+....|..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~ 608 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKH 608 (776)
T ss_pred EEeecccceEEecccccCCceee-eeehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceee
Confidence 3454566666556553 222222 22233333334433 456899999999999999543 2224456666778999
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEECC
Q 004594 646 LDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 646 l~fspdg~~llaSgs~Dg~IrvWDl~ 671 (743)
|+...+|.++||+|- ..|-+-|++
T Consensus 609 idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 609 IDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred eEeecCCcEEEEeec--ceEEEEecc
Confidence 999999999999885 567777765
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.6 Score=44.31 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=62.0
Q ss_pred eeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEE-EEE-cCCC------------
Q 004594 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRF-SPSL------------ 609 (743)
Q Consensus 544 ~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~-l~f-spd~------------ 609 (743)
.......+......+.+|+.+|++++.|+...-|.|.|+|+.++..++.++|..+.=.. +.. ....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34455667777778999999999999999888899999999999988888876543111 111 1111
Q ss_pred ----C-EEEEEeCCCeEEEEECCCCCe
Q 004594 610 ----S-RLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 610 ----~-~L~Sgs~Dg~V~vWDl~~~~~ 631 (743)
. +++-+-.-|.|-||+++++..
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCE
Confidence 1 234455688888888887664
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.75 E-value=75 Score=39.05 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=72.3
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEECC------C---------CeEEEEEccC---CCCEEEEEEcC
Q 004594 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEEH---TQWITDVRFSP 607 (743)
Q Consensus 553 ~H~~~V~~i~fs---p----dg~~LaSgs~Dg~V~IWd~~------t---------~~~~~~l~~H---~~~V~~l~fsp 607 (743)
.-..+|..|+|. . ..++|++= ....+.|+... . ..++..+..+ ..+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778889887 2 12355443 35566666611 1 1233444322 34577999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCC----CeeEEEEecCCC----------CeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 608 -SLSRLATSSADRTVRVWDTENP----DYSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 608 -d~~~L~Sgs~Dg~V~vWDl~~~----~~~l~~l~gh~~----------~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
+...||.-+..|...|||+... ...+.....+.+ .-..|+|.++...+| .|+ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 4678999999999999999211 111111111222 234788988766566 454 45799999987
Q ss_pred CeE
Q 004594 673 GSC 675 (743)
Q Consensus 673 g~~ 675 (743)
...
T Consensus 234 ~~~ 236 (765)
T PF10214_consen 234 NWQ 236 (765)
T ss_pred CCc
Confidence 754
|
These proteins are found in fungi. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.37 E-value=16 Score=44.31 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 004594 553 ASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 553 ~H~~~V~~i~fspd---g~~LaSgs~Dg~V~IWd~~t 586 (743)
.+...|..+.|+|. +..|+.=..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 45567999999995 57888888899999999965
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.28 E-value=8 Score=43.35 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~----~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~ 628 (743)
...++|.+|.||+|.+.||+--.|++|-+++....+.. .+.+..+..|....|... .-++--. +.-|-+|-+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEch
Confidence 34568999999999999999999999999987322211 112223455888888765 3333333 33456665544
Q ss_pred CCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs 660 (743)
....++..+.|.-.|.-..|+++-..+|.+.+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 44446666778888888888888665444433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.07 E-value=45 Score=36.58 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=64.9
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEE--EEEccC----------CCCEEEEEEcCCCCEEEEEeC---CC-------e
Q 004594 563 FSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEH----------TQWITDVRFSPSLSRLATSSA---DR-------T 620 (743)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWd~~t~~~~--~~l~~H----------~~~V~~l~fspd~~~L~Sgs~---Dg-------~ 620 (743)
+...+..++--+.+|.|+--|+...... ..+..- .+.---+++++...+|++.-. ++ .
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 3333334444566777766666543221 111100 111223567765555544321 22 3
Q ss_pred EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCeEEEEEec
Q 004594 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKV 681 (743)
Q Consensus 621 V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaS-gs~Dg~IrvWDl~tg~~v~~~~~ 681 (743)
|-++|+.+++. +..+.- ...+.+|..+.+..-+|++ ...++.|.|||..+|+.++.+..
T Consensus 271 VWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 271 VWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 77889888665 555542 2357799999887666654 45689999999999999988875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK10350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=2.1 Score=39.35 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=7.8
Q ss_pred ccccccchhhh-hHHHH
Q 004594 68 NEKHSESAASY-IESQV 83 (743)
Q Consensus 68 ~~~~s~~a~qY-iq~q~ 83 (743)
+...+.....| |..++
T Consensus 21 N~~NNPnqpGY~ipSQQ 37 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQ 37 (145)
T ss_pred hccCCCCCCCCcCcHHH
Confidence 33444555667 44443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.96 E-value=43 Score=35.53 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~ 637 (743)
-..|+-.|||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.......+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567788899999999888888888999988877666666667778888988776664433 455556655443222221
Q ss_pred --cCCCCeEEEEEecCCCeEEEEEeCC---------CcEEEEECCCCeEEEEEeccCceeeecCCCEEEEEecCCeEEE
Q 004594 638 --GHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 638 --gh~~~V~sl~fspdg~~llaSgs~D---------g~IrvWDl~tg~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~v~v 705 (743)
.-........|++.|. +.+++... +.|+||+.-.|. +...+|..|+|...++.-.+..|..
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQGG------GPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCCC------CCcceEECCCCcEEEEeccccceEE
Confidence 1234567788999876 55566421 335555443321 3356888888887777655554443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.92 E-value=11 Score=38.80 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=67.1
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCe-----EEEEEcc----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004594 559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 559 ~~i~fspdg~~L-aSgs~Dg~V~IWd--~~t~~-----~~~~l~~----H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl 626 (743)
+.++|+.+.+.+ ++-+.+.+|.-|| +.++. .+..++. ..-.--.+++..+|.+++++-..++|.-.|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 467888766644 5566788888888 44432 2222221 0111123445667888888888999999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecC-CCeEEEEEeCC
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNN 662 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspd-g~~llaSgs~D 662 (743)
.+++. +.+++-.+..|+++||--. -..+++++..+
T Consensus 241 ~tGK~-L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 241 TTGKI-LLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCCcE-EEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 99886 7777777889999999633 22345555433
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.3 Score=41.73 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=49.8
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeEEE------Ee-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 004594 606 SPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 606 spd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~------l~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~t 672 (743)
..++.+|++-+.+|.+++||+.+.+..+.. +. .....|..+.+..+|.-+ ++-+ +|....||..-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEe-CCCEEEecccc
Confidence 345788988899999999999986542221 21 244668888888777644 4554 57789998876
Q ss_pred CeEEEEE
Q 004594 673 GSCAGVF 679 (743)
Q Consensus 673 g~~v~~~ 679 (743)
+..+...
T Consensus 97 ~~W~~vs 103 (219)
T PF07569_consen 97 GCWIRVS 103 (219)
T ss_pred ceeEEec
Confidence 6555433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=86.36 E-value=2.6 Score=31.67 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 004594 556 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 556 ~~V~~i~fspdg---~~LaSgs~Dg~V~IWd~~t 586 (743)
+.|.+|.|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 469999999844 5888888889999999984
|
It contains a characteristic DLL sequence motif. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.91 E-value=25 Score=39.63 Aligned_cols=164 Identities=13% Similarity=0.082 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCeEEEEE-ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~-------t~~~~~~l-~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~ 629 (743)
+.+..+...|.-+++. |..+.||+.. .+.....+ .++...+.+| ++.....|.|++|+--..
T Consensus 29 ~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~ 98 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISH 98 (422)
T ss_dssp -EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-
T ss_pred eEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchh
Confidence 4444454455444443 7899999984 33333333 3444444333 344556889999974332
Q ss_pred CeeEEE-------------EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEeccCcee----eecCCC
Q 004594 630 DYSLRT-------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMP----IILKGC 692 (743)
Q Consensus 630 ~~~l~~-------------l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~i~----~s~~g~ 692 (743)
...+.+ +....-.+......+.+ + +.+..+|.|-+...+....+..+....... +.....
T Consensus 99 ~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~-I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~ 175 (422)
T PF08801_consen 99 LLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG--F-IVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSS 175 (422)
T ss_dssp TT--EEEE------------------EEEEEEETTT--E-EEEETT--EEEEEE-TTS-EEEEE-TT-------------
T ss_pred hhhcCccccccccccceeeecCCceEEECCCCceEE--E-EEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccC
Confidence 211111 11111122223445543 3 345557777777777644444443211100 000000
Q ss_pred EEEEEecCCeEE-EEecccceEEEeecCCCCEEEEEeCCCcEEEeCC
Q 004594 693 FILNSIFNCYLL-LHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 693 ~L~sgs~Dg~v~-vh~~~v~~l~vs~~~~~~~laSgs~DG~V~iWd~ 738 (743)
.++.+- +- ..........+..+.....+++...+|.|.+|+-
T Consensus 176 ~~~~~~----~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 176 SIFSSL----LPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp --------------------EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeccc----cCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 010100 00 0111112334444444689999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=33 Score=39.96 Aligned_cols=106 Identities=8% Similarity=0.016 Sum_probs=52.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 004594 566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~~~~--l~~H~~~V~~l~fspd~~~L~Sgs~D------g~V~vWDl~~~~~~ 632 (743)
++++++.||.+ ..+.+||..+.+-... +....... +++. -++..++.|+.+ ..|.+||+.+....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 67788888865 3466788766443211 11111111 1121 245666666632 45888998765431
Q ss_pred EE-EEecCCCCeEEEEEecCCCeEEEEEeCCC--------cEEEEECCCCeEE
Q 004594 633 LR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------EIRYWSINNGSCA 676 (743)
Q Consensus 633 l~-~l~gh~~~V~sl~fspdg~~llaSgs~Dg--------~IrvWDl~tg~~v 676 (743)
.. .+...... .+++.. + ..+++.|+.+. .+.+||..+++..
T Consensus 420 ~~~~~p~~r~~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 420 KGSPLPISHYG-GCAIYH-D-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred ecCCCCccccC-ceEEEE-C-CEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 11 11101111 122222 2 34666666432 3888998877543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.57 E-value=2.8 Score=31.49 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCC
Q 004594 641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG 673 (743)
Q Consensus 641 ~~V~sl~fspdg~--~llaSgs~Dg~IrvWDl~tg 673 (743)
+.|.++.|+|+.. .+|+..-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998644 68877777889999999953
|
It contains a characteristic DLL sequence motif. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=85.56 E-value=50 Score=40.48 Aligned_cols=103 Identities=8% Similarity=-0.011 Sum_probs=60.1
Q ss_pred CCcEEEEECCCCeEEEEEccC---------CC--------CE-EEEEEcCCCCEEEEEe------------------CCC
Q 004594 576 DKKAVLWCTESFTVKSTLEEH---------TQ--------WI-TDVRFSPSLSRLATSS------------------ADR 619 (743)
Q Consensus 576 Dg~V~IWd~~t~~~~~~l~~H---------~~--------~V-~~l~fspd~~~L~Sgs------------------~Dg 619 (743)
+|.|+-+|+++++.+-.+..- .+ .+ ..++++++..+++.+. ..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999987665310 01 11 2234555444443322 134
Q ss_pred eEEEEECCCCCeeEEEEec--CCC-------CeEEEEEec-CCC--eEEEEEeCCCcEEEEECCCCeEEEEE
Q 004594 620 TVRVWDTENPDYSLRTFTG--HST-------TVMSLDFHP-SKE--DLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 620 ~V~vWDl~~~~~~l~~l~g--h~~-------~V~sl~fsp-dg~--~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
.|.-.|+++++. +..+.. |.- ...-+++.. +|+ .+++.++.+|.+.++|.++|+.+..+
T Consensus 415 slvALD~~TGk~-~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKE-RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCce-EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 566667777664 333332 211 111223322 442 37889999999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.60 E-value=5.4 Score=49.18 Aligned_cols=108 Identities=11% Similarity=-0.070 Sum_probs=70.0
Q ss_pred CEEEEEEcCCCCEEE--EEeCCCeEEEEECCCCCeeE----EEEecC------CCCeEEEEEecCCCeEEEEEeCCCcEE
Q 004594 599 WITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSL----RTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIR 666 (743)
Q Consensus 599 ~V~~l~fspd~~~L~--Sgs~Dg~V~vWDl~~~~~~l----~~l~gh------~~~V~sl~fspdg~~llaSgs~Dg~Ir 666 (743)
.|..+...+|+...+ ..+.+-.|.+||+++-.... .-|..| ...+.++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 445555566655433 33345689999997643211 111112 234567889998666677888899999
Q ss_pred EEECCCCe-EEEEEe---ccCceeeecCCCEEEEEecCCeEEEE
Q 004594 667 YWSINNGS-CAGVFK---VCNLMPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 667 vWDl~tg~-~v~~~~---~~~~i~~s~~g~~L~sgs~Dg~v~vh 706 (743)
|..+.--. .+..+. ..++++|+|.|+-++.|..+|++.-.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 98876432 122222 24668999999999999999998763
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=84.28 E-value=17 Score=39.67 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEE----ccCCCCEEEEEEcCC---CCEEEEEeC-C--------
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 618 (743)
Q Consensus 558 V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~---~~~l----~~H~~~V~~l~fspd---~~~L~Sgs~-D-------- 618 (743)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|+.... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5599999999 33333 2222 123456899999994 234433322 1
Q ss_pred CeEEEEECCCC-------CeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCC
Q 004594 619 RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 619 g~V~vWDl~~~-------~~~l~~l~g---h~~~V~sl~fspdg~~llaSgs~D 662 (743)
..|.-|.+... +..+..+.. .......|.|.|+|. |+++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCC
Confidence 23444444332 111122222 223457799999984 55555533
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.11 E-value=1.2e+02 Score=37.61 Aligned_cols=109 Identities=13% Similarity=-0.028 Sum_probs=64.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC--CCe---EEEEEeCCCcEEEEECC
Q 004594 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KED---LLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 597 ~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspd--g~~---llaSgs~Dg~IrvWDl~ 671 (743)
.+.+++....-+...++.++.++.+...++.........-+..+..|.|++++|. +++ +++.|..+..+.+.-..
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 4445555555555678888878888888877655211222223467999999975 444 78778776665554332
Q ss_pred -CCeEEEEE--ecc---Cc---eeeecCCCEEEEEecCCeEEE
Q 004594 672 -NGSCAGVF--KVC---NL---MPIILKGCFILNSIFNCYLLL 705 (743)
Q Consensus 672 -tg~~v~~~--~~~---~~---i~~s~~g~~L~sgs~Dg~v~v 705 (743)
....+... .+. .+ .++-.+..||+++..||.+.-
T Consensus 567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 22222221 111 12 224456789999999987765
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.09 E-value=61 Score=39.85 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----eEEEEEccCCC----------CEEEEEEcCCCCEEEEEeCCC
Q 004594 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQ----------WITDVRFSPSLSRLATSSADR 619 (743)
Q Consensus 556 ~~V~~i~fsp-dg~~LaSgs~Dg~V~IWd~~t~-----~~~~~l~~H~~----------~V~~l~fspd~~~L~Sgs~Dg 619 (743)
.+..+|+|+| +...||+....|...||++... ........+.+ .-..|.|.++.+.|+.++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4678899999 6678999999999999999211 11111111122 234688888877777765 56
Q ss_pred eEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCC
Q 004594 620 TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 620 ~V~vWDl~~~~~~l-~~l~gh~~~V~sl~fspdg~~-llaSgs~Dg~IrvWDl~t 672 (743)
.+.++|+++....- .........|.++.-+|+... +|+-. ..+|-+.|+..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 68889998765411 222334567888888877322 33222 35788888876
|
These proteins are found in fungi. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=75 Score=34.79 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 004594 597 TQWITDVRFSPSLSRLATSSADRTVR-VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 597 ~~~V~~l~fspd~~~L~Sgs~Dg~V~-vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
...+.++.+.|++.+++++. .|.+. .+|-..... ......-...++++.+.+++. +++. +..|.+++=....|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCCCCc
Confidence 45688999999877666654 55444 333221111 112223346789999999876 4433 4467665433333332
Q ss_pred EEEEe--------ccCceeeecCCCEEEEEecCCeEEE-------Eecc-----c--ceEEEeecCCCCEEEEEeCCCcE
Q 004594 676 AGVFK--------VCNLMPIILKGCFILNSIFNCYLLL-------HRIF-----L--NLLSVSEWCNPDEISTSSWKDSC 733 (743)
Q Consensus 676 v~~~~--------~~~~i~~s~~g~~L~sgs~Dg~v~v-------h~~~-----v--~~l~vs~~~~~~~laSgs~DG~V 733 (743)
-.... ....+.+.+++..++ .+.+|.+.. |... + ....+... ++...+..+..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFL-DPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEe-CCCceEEECCCceE
Confidence 11111 112345666666544 445665555 2211 1 01112222 24566778889999
Q ss_pred EEeCCC
Q 004594 734 CSHREL 739 (743)
Q Consensus 734 ~iWd~~ 739 (743)
..|+..
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 988764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=83.39 E-value=72 Score=34.56 Aligned_cols=139 Identities=16% Similarity=0.073 Sum_probs=69.1
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-
Q 004594 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN- 671 (743)
Q Consensus 593 l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~- 671 (743)
..+-.+.+..+...+++++++++.....+.-||.-.... ...-......|.+|.|.|++. +.+ ....|.|++=+..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPD 216 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCC
Confidence 344557788998999999999988777778898654332 222223457899999999976 443 3367888887722
Q ss_pred CCeEEEE-Ee-----cc--CceeeecCCCEEEEEecCCeEEE-------Eec-------ccceEEEeecCCCCEEEEEeC
Q 004594 672 NGSCAGV-FK-----VC--NLMPIILKGCFILNSIFNCYLLL-------HRI-------FLNLLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 672 tg~~v~~-~~-----~~--~~i~~s~~g~~L~sgs~Dg~v~v-------h~~-------~v~~l~vs~~~~~~~laSgs~ 729 (743)
..+.-.. +. +. -.+++.+++...+ ++..|++.+ |.. ......+.+.. +..-+..+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVN-PDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEE-TTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEE-EeCCccEEEeCCCCccceECccccCCCCceEEEEEcC-CCceEEECC
Confidence 1211111 01 11 1245666655555 444555655 221 11233333332 457777888
Q ss_pred CCcEEEe
Q 004594 730 KDSCCSH 736 (743)
Q Consensus 730 DG~V~iW 736 (743)
||.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9988766
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=83.13 E-value=5.8 Score=46.47 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=43.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CCeeEEE-Eec--------------------CCCCeEEEEEec---CCCeEEEE
Q 004594 607 PSLSRLATSSADRTVRVWDTEN----PDYSLRT-FTG--------------------HSTTVMSLDFHP---SKEDLLCS 658 (743)
Q Consensus 607 pd~~~L~Sgs~Dg~V~vWDl~~----~~~~l~~-l~g--------------------h~~~V~sl~fsp---dg~~llaS 658 (743)
++...|+.+..||.+...+... +...... +.. ..+.+.+++++. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888888888887654 1111111 110 123455666665 23457779
Q ss_pred EeCCCcEEEEECCCCeEEEEEe
Q 004594 659 CDNNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg~~v~~~~ 680 (743)
.+.|++||+||+.++.|+.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.08 E-value=76 Score=35.47 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=74.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEc----CCCCE--E-EEEeCC---CeEEEEECCCCCeeEEE
Q 004594 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--L-ATSSAD---RTVRVWDTENPDYSLRT 635 (743)
Q Consensus 566 dg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fs----pd~~~--L-~Sgs~D---g~V~vWDl~~~~~~l~~ 635 (743)
...+|+....++-+.+||+. |+.+..+.. +.+.-|... -.++. | +++..+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45577777888889999987 555555532 233332221 12332 3 444433 47999977632222444
Q ss_pred Eec-------CCCCeEEEEEe--c-CCCeEEEEEeCCCcEEEEECC---CC----eEEEEEeccC---ceeeecCCCEEE
Q 004594 636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKVCN---LMPIILKGCFIL 695 (743)
Q Consensus 636 l~g-------h~~~V~sl~fs--p-dg~~llaSgs~Dg~IrvWDl~---tg----~~v~~~~~~~---~i~~s~~g~~L~ 695 (743)
+.. -...++.+|+- + +|..+++....+|.+..|-+. .+ +.++.|...+ .+.+.....+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 332 12347788874 3 356666677889998888774 33 4577777543 345556666777
Q ss_pred EEecCCeE
Q 004594 696 NSIFNCYL 703 (743)
Q Consensus 696 sgs~Dg~v 703 (743)
.+-++.-|
T Consensus 224 vgEE~~GI 231 (381)
T PF02333_consen 224 VGEEDVGI 231 (381)
T ss_dssp EEETTTEE
T ss_pred EecCccEE
Confidence 77766433
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=82.32 E-value=12 Score=44.24 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=51.0
Q ss_pred CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEECC---------CCeEEEE--EccCC-CCEEEEEEcCCCCEEEEEeCC
Q 004594 553 ASTSKVESCHFS--PDGKLLATGGHDKKAVLWCTE---------SFTVKST--LEEHT-QWITDVRFSPSLSRLATSSAD 618 (743)
Q Consensus 553 ~H~~~V~~i~fs--pdg~~LaSgs~Dg~V~IWd~~---------t~~~~~~--l~~H~-~~V~~l~fspd~~~L~Sgs~D 618 (743)
...+.|.++.|. |+|..|++.|..+.|.+|.-. +...++. +..|+ .+|.+..|.++|.+++.+ +
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--G 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--G 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--C
Confidence 456779999996 489999999999999999532 1122332 23455 679999999998776655 4
Q ss_pred CeEEEEE
Q 004594 619 RTVRVWD 625 (743)
Q Consensus 619 g~V~vWD 625 (743)
..+.|+|
T Consensus 148 Nqlfv~d 154 (631)
T PF12234_consen 148 NQLFVFD 154 (631)
T ss_pred CEEEEEC
Confidence 5677776
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.10 E-value=48 Score=39.68 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
+.+..+.|+.+.. |++-..||+|.||++-.
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecch
Confidence 3688999996665 55667899999999853
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.03 E-value=6.6 Score=38.70 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.9
Q ss_pred CCeEEEEEecC-----CCeEEEEEeCCCcEEEEECCC
Q 004594 641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSINN 672 (743)
Q Consensus 641 ~~V~sl~fspd-----g~~llaSgs~Dg~IrvWDl~t 672 (743)
..|.+++|+|- ++.+|+....++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 47899999994 456899999999999998763
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=81.95 E-value=32 Score=38.93 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEE---ecC---------------CCCeEEEEEecCCCeEEEE
Q 004594 598 QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTF---TGH---------------STTVMSLDFHPSKEDLLCS 658 (743)
Q Consensus 598 ~~V~~l~fspd~~~L~Sgs~-Dg~V~vWDl~~~~~~l~~l---~gh---------------~~~V~sl~fspdg~~llaS 658 (743)
.-|++|.++.|.++|+.++. +|.||.||+..+..+..+- .|- .+...-|..+.||+.+++|
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 56899999999999977775 9999999998876543322 111 1223567788888888877
Q ss_pred Ee
Q 004594 659 CD 660 (743)
Q Consensus 659 gs 660 (743)
.|
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 65
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=81.79 E-value=81 Score=34.03 Aligned_cols=107 Identities=8% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeE---EEEEccCCCCE--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCCC
Q 004594 566 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (743)
Q Consensus 566 dg~~LaSgs~D-----g~V~IWd~~t~~~---~~~l~~H~~~V--~~l~fspd~~~L~Sgs~-----Dg~V~vWDl~~~~ 630 (743)
++.+++.|+.+ ..|..||+.+.+. ...+..-.... .+++.. ++++++.|+. ...|.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3466677765442 11221111111 122222 3556666664 2468888988755
Q ss_pred eeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCc----EEEEECCCCeE
Q 004594 631 YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----IRYWSINNGSC 675 (743)
Q Consensus 631 ~~l~-~l~gh~~~V~sl~fspdg~~llaSgs~Dg~----IrvWDl~tg~~ 675 (743)
.... .+... ......+..-+ ..+++.|+.++. +.+||+++.+.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 3211 12111 11111211222 357777776542 56889887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.58 E-value=1.1e+02 Score=37.99 Aligned_cols=110 Identities=11% Similarity=0.050 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeE
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSL 633 (743)
Q Consensus 556 ~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~--~~l 633 (743)
+.|.++..- .|++||.- .-.|++|++.+.+.++.-..|...+..+...-.++.++.|+.-+.|.+.-.+..+ ...
T Consensus 830 Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence 345444322 56666543 5689999999887777777888899999998889999999988888776655433 212
Q ss_pred EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 004594 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 634 ~~l~gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl 670 (743)
..-..+..+.+++.+-.+.. ++ -+..+|.+.+--.
T Consensus 907 vArD~~p~Wmtaveil~~d~-yl-gae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDDT-YL-GAENSGNLFTVRK 941 (1096)
T ss_pred eehhhCccceeeEEEecCce-EE-eecccccEEEEEe
Confidence 22223566778887765533 33 4555666666543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=72 Score=36.82 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=62.1
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEE--EEccCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeEE-EEe
Q 004594 566 DGKLLATGGHD--KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLR-TFT 637 (743)
Q Consensus 566 dg~~LaSgs~D--g~V~IWd~~t~~~~~--~l~~H~~~V~~l~fspd~~~L~Sgs~Dg---~V~vWDl~~~~~~l~-~l~ 637 (743)
++.+.+.|+.+ ..|..||..+.+-.. .+.........+.+ ++++.+.|+.++ .+.+||.++...... .+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 67777888764 357788876543221 11111111122222 466777777653 477888876543111 011
Q ss_pred cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec----cCceeeecCCCEEEEEecC
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----CNLMPIILKGCFILNSIFN 700 (743)
Q Consensus 638 gh~~~V~sl~fspdg~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----~~~i~~s~~g~~L~sgs~D 700 (743)
........+.+ + ..+++.|+ .+-+||.++++....-.. ...-....+++..+.|+.+
T Consensus 396 ~~r~~~~~~~~--~-~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 396 YPHYKSCALVF--G-RRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CccccceEEEE--C-CEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 01111122222 2 34666664 577899887755422111 1112233466666666654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=63 Score=39.19 Aligned_cols=99 Identities=7% Similarity=0.043 Sum_probs=60.7
Q ss_pred CCEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEE
Q 004594 598 QWITDVRFSPSLSRLATSSA-D----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (743)
Q Consensus 598 ~~V~~l~fspd~~~L~Sgs~-D----g~V~vWDl~~~~~~l~~l~gh~~~V~sl~fspdg~~llaSgs~D-----g~Irv 667 (743)
-.+..+.|+|++++|+-+.. + ..|++.|+.++......+.+- -..++|.+|+..++++.-.+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 44677889999998866533 2 358888998765322233221 25699999988777765533 36888
Q ss_pred EECCCC--eEEEEEeccC-----ceeeecCCCEEEEEec
Q 004594 668 WSINNG--SCAGVFKVCN-----LMPIILKGCFILNSIF 699 (743)
Q Consensus 668 WDl~tg--~~v~~~~~~~-----~i~~s~~g~~L~sgs~ 699 (743)
+++.++ +-...+.... ....+.++.+++..+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~ 242 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA 242 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence 888887 3333443211 1122347777665543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.28 E-value=8.4 Score=39.61 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=46.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeEEEEE-------c-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004594 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 563 fspdg~~LaSgs~Dg~V~IWd~~t~~~~~~l-------~-------~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~ 628 (743)
+...+.+|++-..+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..++||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3447888999999999999999987764321 1 2446677888887777666654 57778887654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.04 E-value=84 Score=33.76 Aligned_cols=149 Identities=10% Similarity=0.027 Sum_probs=90.5
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEEeeCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~l~sGs~D~~V~lw~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~LaSgs~Dg~V~IWd~~t 586 (743)
.++....++.-+++++..+.. ..+++..+.. .+.-+++.. .|++...+..|.-..+.|+.+
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~----------------sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPD----------------SPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred cEEEEEcCCCceEEEeccCCC----------------CcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence 455555567777777654442 1222222222 133556665 588888888666677788765
Q ss_pred C---eEEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC-CeEEEEEecCCCeEEEEEeCC
Q 004594 587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 662 (743)
Q Consensus 587 ~---~~~~~l~~H~~~V~~l~fspd~~~L~Sgs~Dg~V~vWDl~~~~~~l~~l~gh~~-~V~sl~fspdg~~llaSgs~D 662 (743)
. .....+.........++++ |++-+.+..|+-+.+-|+.++..++..-.-..+ .+.++..+++- .+++.. |
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr--~y~vvy-~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR--AYLVVY-D 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe--eEEEEc-c
Confidence 2 3334444455555677775 678888889999999999987764432222223 67788777663 333333 4
Q ss_pred CcEEEEECCCCeEEEEE
Q 004594 663 SEIRYWSINNGSCAGVF 679 (743)
Q Consensus 663 g~IrvWDl~tg~~v~~~ 679 (743)
.-|.+-|..+.+....+
T Consensus 233 egvlivd~s~~ssp~~~ 249 (370)
T COG5276 233 EGVLIVDVSGPSSPTVF 249 (370)
T ss_pred cceEEEecCCCCCceEe
Confidence 45778888766544333
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.96 E-value=12 Score=42.80 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWC 583 (743)
Q Consensus 557 ~V~~i~fspdg~~LaSgs~Dg~V~IWd 583 (743)
.|..|..++.|..++-++.||.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 478888999999999999999776653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=21 Score=41.57 Aligned_cols=105 Identities=8% Similarity=0.051 Sum_probs=50.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEE--EccCCCCEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCC
Q 004594 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--------RTVRVWDTENP 629 (743)
Q Consensus 566 dg~~LaSgs~D------g~V~IWd~~t~~~~~~--l~~H~~~V~~l~fspd~~~L~Sgs~D--------g~V~vWDl~~~ 629 (743)
++++++.||.+ +.|.+||..+.+-... +........++. .++..++.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56777777732 4578888876543221 111111111222 245566666543 23888898875
Q ss_pred CeeEE-EEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeE
Q 004594 630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC 675 (743)
Q Consensus 630 ~~~l~-~l~gh~~~V~sl~fspdg~~llaSgs~D-----g~IrvWDl~tg~~ 675 (743)
..... .+.........+.+ + ..+++.|+.+ ..|.+||..+.+.
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred ceeeCCCCCcccccceEEEE--C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 53211 11111111112222 3 3466666654 3577777776543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.54 E-value=53 Score=31.12 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=67.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEEccCCCCEEEEEE---cC--CCCEEEEEeCCCeEEEEEC
Q 004594 560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRF---SP--SLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 560 ~i~fspdg~~LaSgs~Dg~V~IWd~~t~--------~~~~~l~~H~~~V~~l~f---sp--d~~~L~Sgs~Dg~V~vWDl 626 (743)
.-.|......|++++.-++|.|++.... ..++.+. -...|++|+- .| +...|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3455555567888888899999987532 2333333 3455777654 33 244566664 778999999
Q ss_pred CCCCeeEEEEecCCCCeEEEEEecC---CCeEEEEEeCCCcEEEEECCCCeEEE
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAG 677 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fspd---g~~llaSgs~Dg~IrvWDl~tg~~v~ 677 (743)
.+... ..++.-.+.|+++.+-.- ...+++.|+ +..|.-||....+...
T Consensus 81 ~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 ENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEE
Confidence 87654 223334466787776321 123454444 7778888876554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 743 | ||||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-12 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-08 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-08 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-11 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 9e-11 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-10 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-08 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-08 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 8e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 5e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 6e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-07 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-05 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 7e-05 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 4e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 5e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 5e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 7e-04 |
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 743 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.9 bits (216), Expect = 2e-19
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
+ + + E+ G L +G DK +W + TL H W+
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
V F + + + D+T+RVWD +N ++T H V SLDFH + + + +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310
Query: 663 SEIRYW 668
++ W
Sbjct: 311 QTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.5 bits (189), Expect = 5e-16
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + + V F GK + + DK +W ++ TL H ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 604 RFSPSLSRLATSSADRTVRVWD 625
F + + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.6 bits (179), Expect = 1e-14
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 22/157 (14%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + V + DG L+A+ +D+ +W + K+ L EH + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
+ L + S D+T+++WD L T GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250
Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ FH + SC ++ +R W N C
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN 286
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.4 bits (155), Expect = 9e-12
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68
Query: 650 PSKEDLLCSCDNNSEIRYW 668
S + L + + +
Sbjct: 69 HSGKLLASCSADMTIKLWD 87
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.2 bits (152), Expect = 2e-11
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 44/168 (26%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV----------- 603
S V F P ++ + D +W E+ + TL+ HT + D+
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 604 -------------------------------RFSPSLSRLATSSADRTVRVWDTENPDYS 632
P+ + ++S D+T+++W+ +
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
++TFTGH V + + L+ SC N+ +R W + C +
Sbjct: 136 VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 4e-10
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 20/139 (14%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
P+G + + DK +W ++ T H +W+ VR + + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDN 661
VRVW + H V + + P L S
Sbjct: 167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 662 NSEIRYWSINNGSCAGVFK 680
+ I+ W ++ G C
Sbjct: 226 DKTIKMWDVSTGMCLMTLV 244
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.7 bits (213), Expect = 6e-19
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
Q S + + F P+G ATG D L+ + T IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
V FS S L D VWD D GH V L + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 662 NSEIRYWS 669
+S ++ W+
Sbjct: 333 DSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.2 bits (178), Expect = 1e-14
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S +PD +L +G D A LW + T H I + F P+ + AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
D T R+ + + + + S+ F S LL + ++ W A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305
Query: 677 GVFK 680
GV
Sbjct: 306 GVLA 309
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (126), Expect = 5e-08
Identities = 21/189 (11%), Positives = 53/189 (28%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
D +++ + + ++R + L +D +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
+ ++ +F L + S C
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 735 SHRELYLYT 743
T
Sbjct: 235 FPNGNAFAT 243
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 6e-08
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ TL H I + + L ++S D + +WD+ + + S+ VM+
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103
Query: 647 DFHPSKEDLLCSCDNNSEIRYW 668
+ PS + C +N Y
Sbjct: 104 AYAPSGNYVACGGLDNICSIYN 125
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634
D LW E+ +T HT + + +P + + D + ++WD +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQ 220
Query: 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCF 693
TFTGH + + ++ F P+ + + +++ R + + + N++ I F
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 4/137 (2%)
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
I D R + + + L+ + + RT GH + ++ + LL S
Sbjct: 18 IRDARKACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTD-SRLLVSA 73
Query: 660 DNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWC 719
+ ++ W + + + + N + L NL +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 720 NPDEISTSSWKDSCCSH 736
C
Sbjct: 134 RVSRELAGHTGYLSCCR 150
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.3 bits (196), Expect = 1e-16
Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 6/181 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+ ++ D +A ++ + ++ + L+EH +T V ++P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
DR VW + + E + I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 676 AGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCS 735
V K +L+ ++ +L + + +
Sbjct: 130 WWVCKHIKKPIR----STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 736 H 736
Sbjct: 186 S 186
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 9/81 (11%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
+ I+ ++ +++A + V +++ + + H+ V +D+ P +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64
Query: 655 LLCSCDNNSEIRYWSINNGSC 675
+ +C + W++ +
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTW 85
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
F + L+A GHD VL+ +S K + +R + D+
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
+ L + H +V + +K C+ + + W + +
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
+ DKKA + + H ++ + S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
+ T+ D + +WD + + +L+
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
+ + + +V ++PD + T G D+ A +W + T K + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
VR++P+ + A S R + + EN + + + + LL +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 660 DNNSEIRYWSINNGSC 675
+ + R +S
Sbjct: 160 SCDFKCRIFSAYIKEV 175
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.9 bits (190), Expect = 6e-16
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
+E + V S F+ DG+ + +G D+ LW ++ KS T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
H ++ V + + + + S DR V WD ++ + L GH +V+S+
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363
Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
+ ++ + + + R W
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 3e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
V S + + + + +G D+ + W +S L+ H + V P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 609 LSRLATSSADRTVRVWDTE 627
+ AT S D R+W +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 7e-12
Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
DGK +A G D+ +W +E+ + L+ H + V F+ +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 614 TSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
+ S DR+V++W+ +N + T+ GH V+S+ + ++ + S +
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKD 329
Query: 663 SEIRYWSINNGSCAGVFK 680
+ +W +G+ + +
Sbjct: 330 RGVLFWDKKSGNPLLMLQ 347
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.4 bits (116), Expect = 9e-07
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 21/139 (15%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
TS V FS DG+ LATG +K ++ ++ + L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
+I V FSP LAT + DR +R+WD EN + + D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178
Query: 657 CSCDNNSEIRYWSINNGSC 675
S + +R W + G C
Sbjct: 179 VSGSGDRTVRIWDLRTGQC 197
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 49/198 (24%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF------ 605
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + +
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177
Query: 606 ------------------------------------SPSLSRLATSSADRTVRVWDTENP 629
+A S DR VRVWD+E
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237
Query: 630 ------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN 683
D + TGH +V S+ F + S + ++ W++ N + K N
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 684 LMPIILKGCFILNSIFNC 701
+ + + +
Sbjct: 297 SGTCEVTYIGHKDFVLSV 314
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.0 bits (102), Expect = 5e-05
Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 20/166 (12%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 637
+HT + V+FS LAT ++T +V+ + + + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNS 697
+ S+ F P + L ++ + N + + +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 698 IFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSHRELYLYT 743
+ + + L + I + Y+
Sbjct: 179 VSGSG--DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
+ H++ I + +++ P D L H++ V
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+ F E L C+ + + +++GS
Sbjct: 67 CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLS 100
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 4e-14
Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 8/185 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ V +C + + TG DK ++ + + L H + ++++ L +
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
S DRTVRVWD + + +ST + + ++ + W + S
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
+ P+ + ++ + + ++ SV I S D+
Sbjct: 130 SVPDHGEEHDYPL------VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183
Query: 735 SHREL 739
++
Sbjct: 184 IVWDV 188
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 6/90 (6%), Positives = 24/90 (26%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
++ H ++ + + S ++ +++ + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ S++F D S + +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 6e-08
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
F +L +G + + ++ S V + + + I V F + +A
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 617 ADRTVRVWD 625
D +
Sbjct: 343 KDGQSFLEI 351
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 2e-13
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
S F+ GK + G D W T + + + S + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328
Query: 620 TVRVWD 625
V++
Sbjct: 329 KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 29/201 (14%), Positives = 51/201 (25%), Gaps = 8/201 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
FQ S S H + DG++ D +TL H + + V S
Sbjct: 3 FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
+ T V+VWD +P S + S P L+ + +
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 663 SEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPD 722
+ + + + + I + L
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 723 EISTSSWKDSCCSHRELYLYT 743
+ T S+ L+T
Sbjct: 180 QGHTDGASCIDISNDGTKLWT 200
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S++ S + P G+ LA G + H + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D + W T P + + S++V+S D + + + + + + +
Sbjct: 284 GKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLW 582
+S V SC S D K + TG DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 3e-13
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFH 649
+ +I+D++ PS S L +S D ++ V+ + + L + ++ +F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
+ + + EI +
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPS 91
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 3/138 (2%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
Q+ A + P LL D ++ + L + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
F + + + S + T + + +D L + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 665 IRYWSINNGSCAGVFKVC 682
I N +
Sbjct: 124 IEVIDPRNYGDGVIAVKN 141
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
S FSP K L T G D W ++ + + V+ + S + L +++D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD 647
T + + +T +++++ +
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIF 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
+ + A D + + + + + + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
SP L T+ +D + W+ + ++ F + + S L + +++
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317
Query: 666 RYWSIN 671
+I+
Sbjct: 318 TNAAID 323
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 1e-11
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
++ H + IT + S L ++ A+ + WD + H+T + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+ L + + ++
Sbjct: 63 TTSKGD--LFTVSWDDHLKVVPAGGSGV 88
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 23/189 (12%), Positives = 47/189 (24%), Gaps = 8/189 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
+ + S DGK L + + W + + H IT ++ + L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70
Query: 614 TSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW--- 668
T S D ++V D S S+ + L + + +C + I
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 669 -SINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTS 727
+ + + N + G + + S +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 728 SWKDSCCSH 736
Sbjct: 191 GAFLVATDQ 199
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
+SPD LATG D ++W + + H + + + + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 619 RTVRVWD 625
++ W+
Sbjct: 290 SNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHS 640
++ HT + V +SP RLAT S D +V VW+ P D+ + H+
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268
Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ ++ + E + S +S I++W++
Sbjct: 269 MSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 1e-11
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 2/120 (1%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
W L+ H + +R+ + S D T++VW LRT GH+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNC 701
V S + + + + + + S
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
DG + +G D +W E+ TL H + + ++ L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
V++WD + L+T G + ++ ++ + + ++ ++ W + G
Sbjct: 239 VKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Query: 681 V 681
Sbjct: 298 T 298
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 18/189 (9%), Positives = 52/189 (27%), Gaps = 12/189 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
V +C G + +G D +W + TL HT + + ++ +
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+ V +T ++L T + + S D +
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS----GSRDATLRVWDIETGQCL 130
Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
+ V + + G +++ ++ + + + + +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW-------DPETETCLHTLQGHTNRVYSL 183
Query: 735 SHRELYLYT 743
+++ +
Sbjct: 184 QFDGIHVVS 192
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ +L +G D +W + +H +T ++F+ + TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277
Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
D TV++WD + + +R G V + +K N +E +
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Query: 669 SIN 671
+
Sbjct: 337 DFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
+RVWD E + + T TGH + ++ ++L S + +S ++ W I G C +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 681 VCN 683
N
Sbjct: 255 GPN 257
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.9 bits (148), Expect = 6e-11
Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 13/148 (8%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H + IT + +P L + S D + W + + HS ++SLD +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57
Query: 652 KEDLLC---SCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRI 708
+E + I + ++ +L ++ +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 709 FLNLLSVSEWCNPDEISTSSWKDSCCSH 736
LN + + + ++ + +
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQV 145
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.9 bits (135), Expect = 2e-09
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
+ + + +AT S D + ++ + P ++ H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
V +L + L S ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 13/182 (7%), Positives = 48/182 (26%), Gaps = 18/182 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ + +P L +G +D + + W + S ++H+ I + S +
Sbjct: 13 NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA------ 57
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+ + + T + + + + D++ I +
Sbjct: 58 ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 675 CAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCC 734
+ + + + + + ++ +S +
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 735 SH 736
++
Sbjct: 175 TY 176
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 8e-04
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKVCNLMPIIL 689
L+T +GH+ + +L +P L S + I WS ++ + + N
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 60
Query: 690 KGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736
+++ + H S + ++ D
Sbjct: 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ 107
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.8 bits (148), Expect = 7e-11
Identities = 23/192 (11%), Positives = 47/192 (24%), Gaps = 3/192 (1%)
Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
F +P + +P G + + S T EH+ T + S
Sbjct: 9 FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
PS A+ VR+WDT + L+T S V + + + + +
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127
Query: 666 RYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEIS 725
+ + + + +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187
Query: 726 TSSWKDSCCSHR 737
+ + S +
Sbjct: 188 HTKFVHSVRYNP 199
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
+SPDG +A+ DK +W + V+ T+ T+ + + L + SA+
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 620 TVRVWDTE 627
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640
H+ + + +SP +++A++SAD+T+++W+ +T +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281
Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
L +K L S N I +
Sbjct: 282 IEDQQLGIIWTK-QALVSISANGFINFV 308
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.8 bits (148), Expect = 9e-11
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ + +S + + + + E +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
R S + D + + E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 16/177 (9%), Positives = 42/177 (23%), Gaps = 8/177 (4%)
Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
FSP DG L+A + + + ++ +K I VR
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ ++D F + V ++ + + + + D +
Sbjct: 67 FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 680 KVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNPDEISTSSWKDSCCSH 736
++ + L ++ + + +
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+L+ +G D LW E R+ + + D
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 621 VRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
++VWD LRT HS V L F + S ++ I W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
E ++ + +++ ++ + D T+++WD + R TGH+ +V+ L +
Sbjct: 9 HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65
Query: 651 SKEDLLCSCDNNSEIRYW 668
S
Sbjct: 66 RVIITGSSDSTVRVWDVN 83
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
D K + +G +D K +W + TL EH+ + ++F +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279
Query: 612 LATSSADRTVRVWD 625
+ +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
D + + +G D +W + K L HT + +++ +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
D K + + D+ +W T + TL H + I +++ L + + S+D T
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNT 199
Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+R+WD E + + S + +I+ W +
Sbjct: 200 IRLWDIECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 7e-10
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
+ + H I V S + S D ++VWD + D + ++
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
H + +++ + L+ + + ++ ++ I
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 21/201 (10%), Positives = 58/201 (28%), Gaps = 17/201 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
+ + S + D +W + ++ ++ H + V +
Sbjct: 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
+ R +AT+S + + D + ++ D L +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 662 NSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVSEWCNP 721
N + + G + P + L ++ L L + ++ S++
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESN-SLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 722 DEISTSSWKDSCCSHRELYLY 742
+IS + ++ + +
Sbjct: 190 VDISERGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
+S V S F+ G+ L + G D K W ++ +TL H I +
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
LA V+D + R+ G E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 17/144 (11%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWC----------------TESFTVKSTLEEHTQW 599
+ + S FSP G LLA T S H+ W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ + F+ S L ++ D +R WD + + + T H + + + ++ S
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSL 350
Query: 660 DNNSEIRYWSINNGSCAGVFKVCN 683
+ G +G+ N
Sbjct: 351 AEPGVFDVKFLKKGWRSGMGADLN 374
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%)
Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL------WCTESFTVKSTL 593
+ + S S G L+ATG ++ + +F + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------SLRTFTG 638
++ I V+FSP S LA + + ++ +
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
HS+ VMSL F+ S E L + + +R+W +
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 56.7 bits (135), Expect = 4e-09
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
AE G+ +Q + + + V+ ++ + E
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298
Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
I + S L A S+ D+T+ + D E+ + LR+ +
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 6e-09
Identities = 20/198 (10%), Positives = 47/198 (23%), Gaps = 15/198 (7%)
Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
P++ + + P +A V ++ V + +T V+FS
Sbjct: 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
P L + V VW S F + + + + + +
Sbjct: 73 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132
Query: 657 CSCDNNSEIRYWSINNGSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLNLLSVS 716
++ + S ++G+ G + +
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192
Query: 717 EWCNPDEISTSSWKDSCC 734
++ D
Sbjct: 193 KFSASDRTHHKQGSFVRD 210
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
+ AT AD T+RVWD ++ +T + + + + S + + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 668 WSI 670
+ +
Sbjct: 323 YEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
D + AT G D +W + Q + + + + R+ + S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316
Query: 618 DRTVRVWD 625
D T+ ++
Sbjct: 317 DGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 12/158 (7%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
+ R + G Q +S V + FSP + L +G K ++W
Sbjct: 38 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97
Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSLRTFT 637
VKS + I+D+ + RL D ++ +
Sbjct: 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+ D+ S + Y
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.9 bits (133), Expect = 7e-09
Identities = 9/124 (7%), Positives = 29/124 (23%), Gaps = 7/124 (5%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
+ + + + S TV + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+ D + + ++ S P +++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 676 AGVF 679
VF
Sbjct: 124 LEVF 127
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.5 bits (119), Expect = 3e-07
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + SP G ++ A + + + V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 615 SSADRTVRVWDTE 627
+ V++ +
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 5/122 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
F D + AT + ++ + T+ SP +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
+ +D + H T + F D L +++ ++ +
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329
Query: 680 KV 681
K+
Sbjct: 330 KL 331
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 37.8 bits (86), Expect = 0.003
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
F G L GG ++ ++ ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (118), Expect = 8e-07
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D K + + E E T
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
A + + D E + + + T ++HP
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPE 162
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (118), Expect = 8e-07
Identities = 13/127 (10%), Positives = 31/127 (24%), Gaps = 7/127 (5%)
Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
D + T + L ++ +K+ L+ + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84
Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
V + D + ++ + + S + + +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 677 GVFKVCN 683
+
Sbjct: 145 KIQSTRG 151
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 8/68 (11%), Positives = 14/68 (20%), Gaps = 3/68 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+P + E + V S S + A
Sbjct: 246 TAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302
Query: 621 VRVWDTEN 628
+ +D E
Sbjct: 303 LAAYDAET 310
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (90), Expect = 0.001
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 6/131 (4%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
I + +P G+ AT + V + ++ T +
Sbjct: 29 IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88
Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
SP LA + + + E + + + + P + +L + S+
Sbjct: 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148
Query: 665 IRYWSINNGSC 675
+ +
Sbjct: 149 LYGLGRDLHVM 159
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.002
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ +P S S + S DG + GG + E+ K ++ +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
Query: 604 RFSPSLSR 611
+R
Sbjct: 328 ASVRLFTR 335
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.7 bits (107), Expect = 1e-05
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 7/147 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D + + + E E +
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
+ + + TV + +HP E + + + E + +N
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP--EPRVAAIIASHEHPEFIVNV 181
Query: 673 GSCAGVFKVCNLMPIILKGCFILNSIF 699
V V L I + F
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPF 208
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.9 bits (92), Expect = 0.001
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
V S DG + G K ++ + L+ ++ P S L
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
+ ++V V+D +N P + V+ +++ +++ S
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383
Query: 660 -DNNSEIRYW 668
+++S +
Sbjct: 384 KNDSSALVVV 393
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
S + + VW+ +L V + P K L + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 673 GSCAGVFKVC 682
A F
Sbjct: 69 DDGALTFAAE 78
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
T + + + + + +P ++ S TV V DT
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 743 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.75 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.67 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.65 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.59 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.58 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.57 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.55 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.36 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.28 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.26 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.23 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.13 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.05 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.93 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.84 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.79 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.6 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.52 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.43 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.42 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.31 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.31 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.05 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.03 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.74 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.72 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.25 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.98 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.86 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.57 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.37 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.71 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 91.53 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.49 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 89.82 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.44 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 89.01 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 87.69 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 83.76 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-31 Score=208.82 Aligned_cols=226 Identities=16% Similarity=0.197 Sum_probs=186.7
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 89982189891589953323686446799789982179948998269999987753422223778401247984079999
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+.++.|+|++ +++++|+.|++|++|+..... ......+..|.+.
T Consensus 57 H~~~v~~~~~sp~g---------------~~latg~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~ 104 (311)
T d1nr0a1 57 HSHQTTVAKTSPSG---------------YYCASGDVHGNVRIWDTTQTT-----------------HILKTTIPVFSGP 104 (311)
T ss_dssp CSSCEEEEEECTTS---------------SEEEEEETTSEEEEEESSSTT-----------------CCEEEEEECSSSC
T ss_pred CCCCEEEEEEECCC---------------CEEECCCCCCEEEEEEEECCC-----------------CCCCCCCCCCCCC
T ss_conf 88888999994899---------------967225567367466310111-----------------1000013433575
Q ss_pred EEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEE
Q ss_conf 689999489999999968--992999977998288997047987799999599998-99996999199998879982489
Q 004594 558 VESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~--Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~-LaSgs~DgtIriWDi~~~~~~l~ 634 (743)
|.+++|+|++++|++++. +..++||++++.+...++.+|...|.+++|+|++.+ |++|+.|+.|++||+++.. +..
T Consensus 105 v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~ 183 (311)
T d1nr0a1 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKS 183 (311)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCC
T ss_conf 4332333111000111122111111111111111111111111111111121110120001122111111111111-111
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-------C----CCEEEECCCCEEEEEECCCEE
Q ss_conf 98248998699999069990999981799299998899907799852-------5----712463079999999659849
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-------C----NLMPIILKGCFILNSIFNCYL 703 (743)
Q Consensus 635 ~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-------~----~~i~~s~~g~~L~sgs~Dg~I 703 (743)
.+.+|...|.++.|+|++. ++++++.|+.|++||++++..+..+.. | ..++|++++.+|++|+.|+.|
T Consensus 184 ~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v 262 (311)
T d1nr0a1 184 TFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 262 (311)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
T ss_conf 1111111111123476422-121111111110001244641122211111110024653210247889999999379969
Q ss_pred EEEECCCC---------------EEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 99946311---------------3898621899989999699909996799
Q 004594 704 LLHRIFLN---------------LLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 704 ~i~~~~i~---------------~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
++|+.... ...+.+. +..+++++.||.|++||.+
T Consensus 263 ~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 263 KIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEEC--CCEEEEEECCCEEEEEECC
T ss_conf 999999996999997999863329999951--9999999899979999588
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-31 Score=209.06 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=181.6
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 21898915899533236864467997899821799489982699999877534222237784012479840799996899
Q 004594 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 482 ~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (743)
..++.++|++ +.++.+. ++.+.+|+.... .....+.+|.+.|+|+
T Consensus 20 ~~~~a~~~~g---------------~~l~~~~-~~~v~i~~~~~~-------------------~~~~~~~~H~~~v~~~ 64 (311)
T d1nr0a1 20 AVVLGNTPAG---------------DKIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVA 64 (311)
T ss_dssp CCCCEECTTS---------------SEEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEE
T ss_pred EEEEEECCCC---------------CEEEEEE-CCEEEEEECCCC-------------------CEEEEECCCCCCEEEE
T ss_conf 5999996998---------------9999996-999999999999-------------------6617974788888999
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCCCEEEEEEE
Q ss_conf 9948999999996899299997799828--8997047987799999599998999969--99199998879982489982
Q 004594 562 HFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 562 ~fspdg~~Lasgs~Dg~V~IWd~~s~~~--~~~l~~H~~~V~~iafspd~~~LaSgs~--DgtIriWDi~~~~~~l~~l~ 637 (743)
+|+|++++|++|+.|++|+|||+.+... ...+.+|...|.+++|+|++.+|++++. +..+++|+++++.. +..+.
T Consensus 65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~ 143 (311)
T d1nr0a1 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLT 143 (311)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCC
T ss_pred EEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 99489996722556736746631011110000134335754332333111000111122111111111111111-11111
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEECCCEEEEEECCC---
Q ss_conf 4899869999906999099998179929999889990779985257----124630799999996598499994631---
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHRIFL--- 710 (743)
Q Consensus 638 gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~I~i~~~~i--- 710 (743)
+|...|.+++|+|+++.++++|+.|+.|++||++++++...+..|. .+.++|++.++++++.|+.+++|+...
T Consensus 144 ~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~ 223 (311)
T d1nr0a1 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 223 (311)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111211101200011221111111111111111111111111123476422121111111110001244641
Q ss_pred ----------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf ----------------13898621899989999699909996799
Q 004594 711 ----------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 711 ----------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
.+.++.+.+++.++++|+.||+|++||-.
T Consensus 224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268 (311)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECC
T ss_conf 122211111110024653210247889999999379969999999
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-30 Score=199.11 Aligned_cols=215 Identities=18% Similarity=0.167 Sum_probs=172.5
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 97899821799489982699999877534222237784012479840799996899994899999999689929999779
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~ 585 (743)
++++++|+.|+.|++|+.... .......+..|...|.++.|+|++.++++++.|+.|++|++.
T Consensus 109 g~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 109 GCTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988988612332111111111-----------------111111111111111111111111111111111111111111
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCE
Q ss_conf 98288997047987799999599998999969991999988799824899824899869999906999099998179929
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (743)
Q Consensus 586 s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~I 665 (743)
+.++.....+|...|.+++|++++..+++++.|+.|++||++++.. +..+. |...|.+++|+|++. ++++++.|+.|
T Consensus 172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~~-~~~~i~~l~~~~~~~-~l~~~~~d~~i 248 (337)
T d1gxra_ 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHD-FTSQIFSLGYCPTGE-WLAVGMESSNV 248 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-ECCCC-CCCCEEEEEECCCCC-CCCEECCCCCC
T ss_conf 1111111111111111012344432112235665532111111000-00246-666157999715303-00000025642
Q ss_pred EEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEECCC-----------CEEEEEECCCCCEEEEEECCC
Q ss_conf 99988999077998525---7124630799999996598499994631-----------138986218999899996999
Q 004594 666 RYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL-----------NLLSVSEWCNPDEISTSSWKD 731 (743)
Q Consensus 666 rvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~I~i~~~~i-----------~~l~v~~~~~~~~iaSgs~Dg 731 (743)
++||++.+......... ..+.|++++.++++++.|+.|++|+... .+.++.+.++..+|++++.|+
T Consensus 249 ~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 11111111100001245654169998999999999489969999899997999926999879999927999999990899
Q ss_pred CEEEECCCC
Q ss_conf 099967996
Q 004594 732 SCCSHRELY 740 (743)
Q Consensus 732 ~V~iWd~~~ 740 (743)
+|++||-.|
T Consensus 329 ~I~vWdl~~ 337 (337)
T d1gxra_ 329 KATVYEVIY 337 (337)
T ss_dssp CEEEEEEEC
T ss_pred EEEEEEEEC
T ss_conf 699997789
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-29 Score=196.81 Aligned_cols=226 Identities=17% Similarity=0.298 Sum_probs=185.6
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 47899821898915899533236864467997899821799489982699999877534222237784012479840799
Q 004594 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (743)
Q Consensus 476 ~~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~ 555 (743)
..+...+.++.|++++ .++++|+.|++|++|+...+ ..+..+..|.
T Consensus 52 ~GH~~~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~-------------------~~~~~~~~~~ 97 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTT-------------------NKVHAIPLRS 97 (340)
T ss_dssp CCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTT-------------------EEEEEEECSC
T ss_pred CCCCCCEEEEEECCCC---------------CEEEEEECCCCEEEEECCCC-------------------EEEEEEECCC
T ss_conf 8878988899998999---------------99999978995556310210-------------------2579972465
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCE----EEEEE--------------------------------------
Q ss_conf 996899994899999999689929999779982----88997--------------------------------------
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL-------------------------------------- 593 (743)
Q Consensus 556 ~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~----~~~~l-------------------------------------- 593 (743)
..|.+++|+|++.++++|+.|+.+++|+..... ....+
T Consensus 98 ~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (340)
T d1tbga_ 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33775676012114431013320101332222122211100135421101111111111111124454320012322111
Q ss_pred ---CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEC
Q ss_conf ---04798779999959999899996999199998879982489982489986999990699909999817992999988
Q 004594 594 ---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 594 ---~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl 670 (743)
..+...+.+..+.+...++++++.|+.|++||++++. ++..+.+|...|++++|+|++. +|++++.|+.|++||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~ 255 (340)
T d1tbga_ 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDL 255 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEE
T ss_conf 1123310157630012442126876057369999999994-8899957889858999979989-9999969996999752
Q ss_pred CCCEEEEEEECC------CCEEEECCCCEEEEEECCCEEEEEECC------------CCEEEEEECCCCCEEEEEECCCC
Q ss_conf 999077998525------712463079999999659849999463------------11389862189998999969990
Q 004594 671 NNGSCAGVFKVC------NLMPIILKGCFILNSIFNCYLLLHRIF------------LNLLSVSEWCNPDEISTSSWKDS 732 (743)
Q Consensus 671 ~tg~~v~~~~~~------~~i~~s~~g~~L~sgs~Dg~I~i~~~~------------i~~l~v~~~~~~~~iaSgs~Dg~ 732 (743)
+....+..+... ..+.+++++.+|++|+.|+.|++|+.. ..+.++.+.++..+|++|+.||+
T Consensus 256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~ 335 (340)
T d1tbga_ 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCE
T ss_conf 12211111112244574589999899999999979798999999999398998489997899999089999999906997
Q ss_pred EEEEC
Q ss_conf 99967
Q 004594 733 CCSHR 737 (743)
Q Consensus 733 V~iWd 737 (743)
|++||
T Consensus 336 v~iWd 340 (340)
T d1tbga_ 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-29 Score=197.03 Aligned_cols=232 Identities=16% Similarity=0.221 Sum_probs=190.0
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 78998218989158995332368644679978998217994899826999998775342222377840124798407999
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 477 ~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
.....+.++.|++++ +++++|+ |+.|++|+...... ..........+|.+
T Consensus 49 ~H~~~V~~v~fs~~g---------------~~latg~-dg~V~iWd~~~~~~--------------~~~~~~~~~~~h~~ 98 (337)
T d1gxra_ 49 NHGEVVCAVTISNPT---------------RHVYTGG-KGCVKVWDISHPGN--------------KSPVSQLDCLNRDN 98 (337)
T ss_dssp CCSSCCCEEEECSSS---------------SEEEEEC-BSEEEEEETTSTTC--------------CSCSEEEECSCTTS
T ss_pred CCCCCEEEEEECCCC---------------CEEEEEE-CCEEEEEECCCCCC--------------CCEEEEEEECCCCC
T ss_conf 999928999998999---------------9999997-99889977367763--------------31168764048899
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCC--CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 968999948999999996899299997799--828899704798779999959999899996999199998879982489
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s--~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~ 634 (743)
.|.+++|+|++++|++|+.|+.|++||+.. .+....+..|...|.+++|+|++.++++++.|+.|++|++.++. +..
T Consensus 99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~ 177 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVR 177 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 6899998679988988612332111111111111111111111111111111111111111111111111111111-111
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC---CEEEECCCCEEEEEECCCEEEEEECCC-
Q ss_conf 9824899869999906999099998179929999889990779985257---124630799999996598499994631-
Q 004594 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLLHRIFL- 710 (743)
Q Consensus 635 ~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~L~sgs~Dg~I~i~~~~i- 710 (743)
...+|...|.+++|++++. .+++++.|+.|++||+++++++..+.... .+.+++++.++++++.|+.+++|+...
T Consensus 178 ~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 178 QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 1111111111012344432-112235665532111111000002466661579997153030000002564211111111
Q ss_pred ----------CEEEEEECCCCCEEEEEECCCCEEEECCCC
Q ss_conf ----------138986218999899996999099967996
Q 004594 711 ----------NLLSVSEWCNPDEISTSSWKDSCCSHRELY 740 (743)
Q Consensus 711 ----------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~~ 740 (743)
.+..+.+.+++..+++++.|+.|++||...
T Consensus 257 ~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 1000012456541699989999999994899699998999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.9e-30 Score=199.00 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=104.4
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+++++++.|+++++|+... ........+.+|...|++++|+|+++.|++|+.|++|++|+++.
T Consensus 64 ~~l~s~s~D~~i~vWd~~~-----------------~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 64 NRIVTCGTDRNAYVWTLKG-----------------RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp TEEEEEETTSCEEEEEEET-----------------TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CEEEEEECCCEEEEEEECC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC
T ss_conf 9999997999399986203-----------------32110012232211000111111121100000257630254420
Q ss_pred CE----EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-----------------EEEEEEECCCCCEEE
Q ss_conf 82----889970479877999995999989999699919999887998-----------------248998248998699
Q 004594 587 FT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------------YSLRTFTGHSTTVMS 645 (743)
Q Consensus 587 ~~----~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~-----------------~~l~~l~gh~~~V~s 645 (743)
.. .......|...|.+++|+|++.+|++++.|++|++||+.... ..+....+|...|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 206 (371)
T d1k8kc_ 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206 (371)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 33433111001011122211111111111000134767999840157643100122111111110112440476674789
Q ss_pred EEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEEC
Q ss_conf 99906999099998179929999889990779985257----1246307999999965
Q 004594 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIF 699 (743)
Q Consensus 646 l~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~ 699 (743)
++|+|++. ++++++.|+.|++||+..+.++..+..+. .+.|++++.++++|++
T Consensus 207 ~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d 263 (371)
T d1k8kc_ 207 VCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263 (371)
T ss_dssp EEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETT
T ss_pred EEEECCCC-CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECC
T ss_conf 87512332-1000014786058864101210000014665203654699979999819
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-29 Score=193.14 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=198.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCC------CCCC-CC-----------
Q ss_conf 78998218989158995332368644679978998217994899826999998775------3422-22-----------
Q 004594 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR------VGRS-AE----------- 538 (743)
Q Consensus 477 ~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~------~~~~-~~----------- 538 (743)
.+...+.++.|++++ +++++|+.|++|++|+...+...... +..+ +.
T Consensus 15 GH~~~I~~l~~sp~~---------------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCSSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCEEEEEECCCC---------------CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf 888876899993898---------------99999938992999989999799999578886777763011110111111
Q ss_pred -----CCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf -----377840124798407999968999948999999996899299997799828899704798779999959999899
Q 004594 539 -----VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (743)
Q Consensus 539 -----~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~La 613 (743)
............+.+|...+.++.|++++..+++++.|+.+++||+++++.+..+.+|...+.+++|++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 159 (317)
T ss_dssp TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEE
T ss_conf 11101110011111111000000000000169985577652675235751144303468716777630000166799999
Q ss_pred EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC-------------------EEEEEEECCCCEEEEECCCCE
Q ss_conf 9969991999988799824899824899869999906999-------------------099998179929999889990
Q 004594 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDNNSEIRYWSINNGS 674 (743)
Q Consensus 614 Sgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~-------------------~llaSgs~Dg~IrvWDl~tg~ 674 (743)
+++.|+.|++|++..... +..+.+|...+.++.|+|+.. .++++++.|+.|++||+++++
T Consensus 160 ~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 238 (317)
T d1vyhc1 160 SCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238 (317)
T ss_dssp EEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EEECCCEEEEEEECCCEE-EEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 992798299975125403-4788247787337998632564111034563034302588614751699789998889996
Q ss_pred EEEEEECCCC----EEEECCCCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 7799852571----24630799999996598499994631------------138986218999899996999099967
Q 004594 675 CAGVFKVCNL----MPIILKGCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 675 ~v~~~~~~~~----i~~s~~g~~L~sgs~Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd 737 (743)
++..+.+|.. +.+++++.+|++++.|+.|++|+... .+.++.+.++...|++|+.||+|++||
T Consensus 239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 8899968899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.3e-29 Score=193.86 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=182.3
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 99821898915899533236864467997899821799489982699999877534222237784012479840799996
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (743)
Q Consensus 479 s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V 558 (743)
...+.++.|+|+.. +.++++|+.|++|++|+...+.. ...........+..|.++|
T Consensus 63 ~~~v~~v~fsP~~~-------------g~~lasgs~Dg~i~iWd~~~~~~-----------~~~~~~~~~~~~~~~~~~v 118 (325)
T d1pgua1 63 SSVVTTVKFSPIKG-------------SQYLCSGDESGKVIVWGWTFDKE-----------SNSVEVNVKSEFQVLAGPI 118 (325)
T ss_dssp TSCEEEEEECSSTT-------------CCEEEEEETTSEEEEEEEEEEGG-----------GTEEEEEEEEEEECCSSCE
T ss_pred CCCEEEEEEEECCC-------------CCEEEEEECCCCEEEEEECCCCC-----------EEEEECCCCCCCCCCCCCE
T ss_conf 99889999811799-------------97999994899779854058862-----------1565100254113656737
Q ss_pred EEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 89999489999999968--99299997799828899704798779999959999-8999969991999988799824899
Q 004594 559 ESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRT 635 (743)
Q Consensus 559 ~~i~fspdg~~Lasgs~--Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~-~LaSgs~DgtIriWDi~~~~~~l~~ 635 (743)
.+++|+++++++++++. ++.+++|+.++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+..... ...
T Consensus 119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~ 197 (325)
T d1pgua1 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-SAS 197 (325)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-EEE
T ss_pred EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CEE
T ss_conf 7999899988220100124404788850233110012001234321111234320688862111221111221100-000
Q ss_pred ---EECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC----EEEE---CCCCEEEEEECCCEEEE
Q ss_conf ---8248998699999069990999981799299998899907799852571----2463---07999999965984999
Q 004594 636 ---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL----MPII---LKGCFILNSIFNCYLLL 705 (743)
Q Consensus 636 ---l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~----i~~s---~~g~~L~sgs~Dg~I~i 705 (743)
+.+|...|.+++|+|++..++++++.|+.|++||+++++++..+.+|.. +.++ +++.+|++++.|+.|++
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEE
T ss_conf 00015777752776303453100001123321013430012221111111111111000000368999999958993999
Q ss_pred EECCCCE----------------EEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 9463113----------------8986218999899996999099967
Q 004594 706 HRIFLNL----------------LSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 706 ~~~~i~~----------------l~v~~~~~~~~iaSgs~Dg~V~iWd 737 (743)
|+..... +.+.+.. ...+++++.||.|++||
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEE
T ss_conf 999999788999954874067699999889-99999997999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-29 Score=192.43 Aligned_cols=242 Identities=23% Similarity=0.296 Sum_probs=155.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 89982189891589953323686446799789982179948998269999987753422223778401247984079999
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
....+.++.|++|+ +++++|+ |++|++|+..++............ ..............|...
T Consensus 61 H~~~V~~l~fs~dg---------------~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 123 (388)
T d1erja_ 61 HTSVVCCVKFSNDG---------------EYLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLY 123 (388)
T ss_dssp CSSCCCEEEECTTS---------------SEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCB
T ss_pred CCCCEEEEEECCCC---------------CEEEEEE-CCEEEEEEECCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 99968999999999---------------9999994-994899981364057663166544-324432111014677898
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC---------
Q ss_conf 68999948999999996899299997799828899704798779999959999899996999199998879---------
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------- 628 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~--------- 628 (743)
|++++|+|++++|++|+.|+.|++|+...++.+..+.+|...|.+++|++++..+++++.++.|++||.++
T Consensus 124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 89999889998012134441111211111111111111111111101111111111222101565410111111000012
Q ss_pred ---------------------------------CCEEEE-------EEECCCCCEEEEEEECCCCEEEEEEECCCCEEEE
Q ss_conf ---------------------------------982489-------9824899869999906999099998179929999
Q 004594 629 ---------------------------------PDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (743)
Q Consensus 629 ---------------------------------~~~~l~-------~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvW 668 (743)
+.. +. ...+|...|.+++|+|++. ++++++.|+.|++|
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iw 281 (388)
T d1erja_ 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLW 281 (388)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCC-CEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCCEEEE
T ss_conf 454421123688787589973898199963455730-0010244333457789878999979999-99999789928987
Q ss_pred ECCCCEEE------------EEEECC----CCEEEECCCCEEEEEECCCEEEEEECCCC------------EEEEE----
Q ss_conf 88999077------------998525----71246307999999965984999946311------------38986----
Q 004594 669 SINNGSCA------------GVFKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLN------------LLSVS---- 716 (743)
Q Consensus 669 Dl~tg~~v------------~~~~~~----~~i~~s~~g~~L~sgs~Dg~I~i~~~~i~------------~l~v~---- 716 (743)
|++.+... .....| ..+.+++++.+|++|+.|+.|++|+.... +.++.
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~ 361 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred ECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC
T ss_conf 51577643210134442001101245532789998899999999969897999999999699999688997899998467
Q ss_pred --ECCCCCEEEEEECCCCEEEECC
Q ss_conf --2189998999969990999679
Q 004594 717 --EWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 717 --~~~~~~~iaSgs~Dg~V~iWd~ 738 (743)
+.++...|++|+.||+|++|+-
T Consensus 362 ~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 362 SSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCCCCCCCEEEEEECCCEEEEEEE
T ss_conf 425899999999918997999762
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=7.6e-29 Score=192.87 Aligned_cols=225 Identities=16% Similarity=0.159 Sum_probs=175.8
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 89982189891589953323686446799789982179948998269999987753422223778401247984079999
Q 004594 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (743)
Q Consensus 478 ~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~ 557 (743)
...+++++.|++|+ +++++|+.|+.|++|+. .+..+..+..+++|.+.
T Consensus 6 ~~~pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~-----------------~~~~~~~~~~l~gH~~~ 53 (371)
T d1k8kc_ 6 LVEPISCHAWNKDR---------------TQIAICPNNHEVHIYEK-----------------SGNKWVQVHELKEHNGQ 53 (371)
T ss_dssp CSSCCCEEEECTTS---------------SEEEEECSSSEEEEEEE-----------------ETTEEEEEEEEECCSSC
T ss_pred CCCCEEEEEECCCC---------------CEEEEEECCCEEEEEEC-----------------CCCCEEEEEEECCCCCC
T ss_conf 99883899998999---------------99999948898999988-----------------89978999995588998
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---E
Q ss_conf 68999948999999996899299997799828--899704798779999959999899996999199998879982---4
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S 632 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~--~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~---~ 632 (743)
|++++|+|++++|++|+.|++|+|||+++... ...+.+|...|.+++|+|+++.|++++.|++|++|++..... .
T Consensus 54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~ 133 (371)
T d1k8kc_ 54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133 (371)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCC
T ss_conf 88999979999999997999399986203321100122322110001111111211000002576302544203343311
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCC------------------EEEEEEECC----CCEEEECC
Q ss_conf 89982489986999990699909999817992999988999------------------077998525----71246307
Q 004594 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------------SCAGVFKVC----NLMPIILK 690 (743)
Q Consensus 633 l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg------------------~~v~~~~~~----~~i~~s~~ 690 (743)
......|...|.+++|+|++. +|++++.|+.|++||+... ..+.....+ ..++|+++
T Consensus 134 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 212 (371)
T d1k8kc_ 134 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212 (371)
T ss_dssp EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC
T ss_conf 100101112221111111111-1000134767999840157643100122111111110112440476674789875123
Q ss_pred CCEEEEEECCCEEEEEECCC------------CEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 99999996598499994631------------13898621899989999699909996
Q 004594 691 GCFILNSIFNCYLLLHRIFL------------NLLSVSEWCNPDEISTSSWKDSCCSH 736 (743)
Q Consensus 691 g~~L~sgs~Dg~I~i~~~~i------------~~l~v~~~~~~~~iaSgs~Dg~V~iW 736 (743)
+.++++++.|+.+.+|+... .+.++.+.++. .+++++.|+.+++|
T Consensus 213 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~-~~la~g~d~~~~~~ 269 (371)
T d1k8kc_ 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-SLVAAGHDCFPVLF 269 (371)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT-EEEEEETTSSCEEE
T ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCC-CEEEEECCCCEEEE
T ss_conf 3210000147860588641012100000146652036546999-79999819926787
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.6e-27 Score=180.07 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=152.8
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCC--------------------------CCCC
Q ss_conf 82189891589953323686446799789982179948998269999987--------------------------7534
Q 004594 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--------------------------DRVG 534 (743)
Q Consensus 481 ~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~--------------------------~~~~ 534 (743)
.+.++.|++++ +++++|+.|+.|++|+........ +...
T Consensus 123 ~V~~l~~s~~~---------------~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i 187 (388)
T d1erja_ 123 YIRSVCFSPDG---------------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187 (388)
T ss_dssp BEEEEEECTTS---------------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CEEEEEECCCC---------------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 88999988999---------------801213444111121111111111111111111110111111111122210156
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCEEEEEE-------CCCCCCEEEEEEC
Q ss_conf 2222377840124798407999968999948-9999999968992999977998288997-------0479877999995
Q 004594 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFS 606 (743)
Q Consensus 535 ~~~~~~~~~~~~~~~~l~~H~~~V~~i~fsp-dg~~Lasgs~Dg~V~IWd~~s~~~~~~l-------~~H~~~V~~iafs 606 (743)
++|+.... ........ ...+.++.+.+ ++.+|++|+.|+.|++|+..++.....+ .+|...|.+++|+
T Consensus 188 ~~~d~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 263 (388)
T d1erja_ 188 RIWDLRTG---QCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263 (388)
T ss_dssp EEEETTTT---EEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred EEEECCCC---CCCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 54101111---11000012-454421123688787589973898199963455730001024433345778987899997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCC-----------EEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEE
Q ss_conf 999989999699919999887998-----------248998248998699999069990999981799299998899907
Q 004594 607 PSLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (743)
Q Consensus 607 pd~~~LaSgs~DgtIriWDi~~~~-----------~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~ 675 (743)
|++.+|++++.|+.|++||++... .+......|...|.+++|+|++. +|++++.|+.|++||++++++
T Consensus 264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCE
T ss_conf 9999999997899289875157764321013444200110124553278999889999-999996989799999999969
Q ss_pred EEEEECCCC----------EEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 799852571----------2463079999999659849999463
Q 004594 676 AGVFKVCNL----------MPIILKGCFILNSIFNCYLLLHRIF 709 (743)
Q Consensus 676 v~~~~~~~~----------i~~s~~g~~L~sgs~Dg~I~i~~~~ 709 (743)
+..+.+|.. ..++|++.+|++++.|++|++|+..
T Consensus 343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 99996889978999984674258999999999189979997621
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=7e-27 Score=180.62 Aligned_cols=233 Identities=19% Similarity=0.243 Sum_probs=177.1
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCC--------CCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC-------
Q ss_conf 422478998218989158995332--------36864467997899821799489982699999877534222-------
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA------- 537 (743)
Q Consensus 473 ~l~~~~s~~~s~i~fs~d~~~~l~--------~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~------- 537 (743)
.+..+++.+..+..|+......+. +....+.+.+.++++|+.|+.+.+|................
T Consensus 68 ~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (340)
T d1tbga_ 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 99999978995556310210257997246533775676012114431013320101332222122211100135421101
Q ss_pred ------------C-------CCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC
Q ss_conf ------------2-------377840124798407999968999948999999996899299997799828899704798
Q 004594 538 ------------E-------VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (743)
Q Consensus 538 ------------~-------~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~ 598 (743)
. ...............+...+.++.+.+...++++|+.|+.|++||+++++++.++.+|..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~ 227 (340)
T d1tbga_ 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227 (340)
T ss_dssp EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 11111111111112445432001232211111233101576300124421268760573699999999948899957889
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEE
Q ss_conf 77999995999989999699919999887998248998--2489986999990699909999817992999988999077
Q 004594 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (743)
Q Consensus 599 ~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l--~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v 676 (743)
.|++++|+|++.+|++++.|+.|++||++.... +..+ ..+...|.+++|+|++. ++++++.|+.|++||+.+++++
T Consensus 228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEE
T ss_conf 858999979989999996999699975212211-11111224457458999989999-9999979798999999999398
Q ss_pred EEEECCCC----EEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99852571----24630799999996598499994
Q 004594 677 GVFKVCNL----MPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 677 ~~~~~~~~----i~~s~~g~~L~sgs~Dg~I~i~~ 707 (743)
..+.+|.. ++|++++.+|++++.|+.|++|+
T Consensus 306 ~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 99848999789999908999999990699799859
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=6.1e-27 Score=180.99 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=163.4
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEE-E
Q ss_conf 224789982189891589953323686446799789982179948998269999987753422223778401247984-0
Q 004594 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P 552 (743)
Q Consensus 474 l~~~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 552 (743)
+...+...+.++.|++++ +++++|+.|++|++|+...+ .....+ .
T Consensus 7 ~~~GH~~~V~~l~~s~dg---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~ 52 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADG---------------KTLFSADAEGHINSWDISTG-------------------ISNRVFPD 52 (299)
T ss_dssp EECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEECSSC
T ss_pred ECCCCCCCCEEEEECCCC---------------CEEEEECCCCEEEEEECCCC-------------------CEEEEECC
T ss_conf 848888782899997999---------------99999908992999999999-------------------68899837
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC------------------------------------------EEE
Q ss_conf 79999689999489999999968992999977998------------------------------------------288
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------------------------------------------TVK 590 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~------------------------------------------~~~ 590 (743)
+|...|++++|+|++.++ +++.|+.+++|+.... +..
T Consensus 53 ~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~ 131 (299)
T d1nr0a2 53 VHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131 (299)
T ss_dssp SCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred CCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 887748998840331121-0231026887316776201110001111344321001122111112222222111111111
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEC
Q ss_conf 99704798779999959999899996999199998879982489982489986999990699909999817992999988
Q 004594 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 591 ~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl 670 (743)
.. .....+.+++|+|++.++++++.|+.|++||+++..........|...|.+++|+|++. ++++++.|+.|++||+
T Consensus 132 ~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 132 EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSV 208 (299)
T ss_dssp EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEG
T ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 10--11112332211111111111111111111111111111111111111111111111111-1111111111111111
Q ss_pred CCCEEEEE---EECC----CCEEEECCCCEEEEEECCCEEEEEECCCC--------------EEEEEECCCCCEEEEEEC
Q ss_conf 99907799---8525----71246307999999965984999946311--------------389862189998999969
Q 004594 671 NNGSCAGV---FKVC----NLMPIILKGCFILNSIFNCYLLLHRIFLN--------------LLSVSEWCNPDEISTSSW 729 (743)
Q Consensus 671 ~tg~~v~~---~~~~----~~i~~s~~g~~L~sgs~Dg~I~i~~~~i~--------------~l~v~~~~~~~~iaSgs~ 729 (743)
.++..... +..| ..++|++++.++++++.|+.|++|+.... .+....+.+...+++++.
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~ 288 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf 11111111111111111111112466645138882899799998999973148983489889689999779899999928
Q ss_pred CCCEEEECCCC
Q ss_conf 99099967996
Q 004594 730 KDSCCSHRELY 740 (743)
Q Consensus 730 Dg~V~iWd~~~ 740 (743)
|++|++||-.|
T Consensus 289 D~~i~iWdl~~ 299 (299)
T d1nr0a2 289 DSNIKFWNVPF 299 (299)
T ss_dssp TSCEEEEECCC
T ss_pred CCEEEEEECCC
T ss_conf 99799994449
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-28 Score=190.22 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 99789982179948998269999987753422223778401247984079999689999489999999968992999977
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (743)
Q Consensus 505 ~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~ 584 (743)
...++++++.|+++++|+................ ..............+...++|++|+|++ +|++|+.|++|+|||+
T Consensus 135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~ 212 (393)
T d1sq9a_ 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS-PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL 212 (393)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC-CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred CCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEC-CCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEE
T ss_conf 4217999838981999874047753410233103-2000145100025789867899978999-8999938982999860
Q ss_pred CCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEE-------------ECCCCC
Q ss_conf 998288997------04798779999959999899996999---19999887998248998-------------248998
Q 004594 585 ESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTF-------------TGHSTT 642 (743)
Q Consensus 585 ~s~~~~~~l------~~H~~~V~~iafspd~~~LaSgs~Dg---tIriWDi~~~~~~l~~l-------------~gh~~~ 642 (743)
.+++++..+ .+|...|.+++|+|++.+|++|+.|+ .|++||+.++.. +..+ .+|.+.
T Consensus 213 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~ 291 (393)
T d1sq9a_ 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSW 291 (393)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEE-EEEECCCCCCCCCEEEEECCCCC
T ss_conf 23321100001111124256387700466532011242898842100103532134-44311566664310232023586
Q ss_pred EEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--------CEEEECCCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf 69999906999099998179929999889990779985257--------1246307999999965984999946311389
Q 004594 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN--------LMPIILKGCFILNSIFNCYLLLHRIFLNLLS 714 (743)
Q Consensus 643 V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~--------~i~~s~~g~~L~sgs~Dg~I~i~~~~i~~l~ 714 (743)
|++++|+|+++ +|+|++.|++|++||+.+++++.++++|. .+++.+++..+++++.. .+..+........
T Consensus 292 V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 369 (393)
T d1sq9a_ 292 VMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKGWRSGM 369 (393)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE-EEEEECTTTSBST
T ss_pred EEEECCCCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCC-EEEECCCCCEECC
T ss_conf 66001389888-069877999899999999979999988687613773489999999999983124-6998866766312
Q ss_pred EEECCCCCEEEEEECCCCEEEECC
Q ss_conf 862189998999969990999679
Q 004594 715 VSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 715 v~~~~~~~~iaSgs~Dg~V~iWd~ 738 (743)
. ......+++.+.|+.|++|++
T Consensus 370 ~--~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 370 G--ADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp T--CTTSCEEEEEETTTEEEEEEE
T ss_pred C--CCCCCEEEEEECCCEEEEEEC
T ss_conf 3--688997999991990899908
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.9e-25 Score=167.84 Aligned_cols=202 Identities=20% Similarity=0.362 Sum_probs=161.6
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+++++|+.|++|++|+... .+.+.++++|.+.|+|++| ++++|++|+.|+.|++|++..
T Consensus 26 ~~l~sgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 26 QKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp SEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred CEEEEEECCCEEEEEECCC-------------------CCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCC
T ss_conf 9999992899399999999-------------------9199999267787763423--630021001110110000024
Q ss_pred CEEEE-------------------------------------------EECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 82889-------------------------------------------97047987799999599998999969991999
Q 004594 587 FTVKS-------------------------------------------TLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 587 ~~~~~-------------------------------------------~l~~H~~~V~~iafspd~~~LaSgs~DgtIri 623 (743)
+.... .+..|...|.++.+.+ ..+++++.|+.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 162 (293)
T ss_dssp CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCEEE
T ss_conf 6410011111100001111110000013566306861344544421210001135431100000--22011069986041
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC--EEEECCCCEEEEEECCC
Q ss_conf 9887998248998248998699999069990999981799299998899907799852571--24630799999996598
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNC 701 (743)
Q Consensus 624 WDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~--i~~s~~g~~L~sgs~Dg 701 (743)
||+++... +..+.++...+..+.+++. .+++++.|+.|++||+++..++..+.++.. ..+..++.++++++.|+
T Consensus 163 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg 238 (293)
T d1p22a2 163 WNTSTCEF-VRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238 (293)
T ss_dssp EETTTCCE-EEEEECCSSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTS
T ss_pred ECCCCCCE-EEEECCCCCCCCCCCCCCC---EEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
T ss_conf 00788838-8997155445322168987---5887658998999866556146652143100000145410799986799
Q ss_pred EEEEEECCC---------------------CEEEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 499994631---------------------138986218999899996999099967
Q 004594 702 YLLLHRIFL---------------------NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 702 ~I~i~~~~i---------------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd 737 (743)
.|++|+... .+.++.++ +..|+++|.||+|++||
T Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 79999888886444567754557845889988999971--99999992299899959
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.9e-24 Score=164.32 Aligned_cols=225 Identities=17% Similarity=0.234 Sum_probs=160.1
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCC----CCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 9978998217994899826999998775----342222377840124798407999968999948999999996899299
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDR----VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (743)
Q Consensus 505 ~~~~lasGs~D~~V~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~ 580 (743)
...++++++.|+.+++|+.......... .....................|...|.+.. +++.+++++..|+.|+
T Consensus 107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~d~~i~ 184 (355)
T d1nexb2 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLI 184 (355)
T ss_dssp TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE--EETTEEEEEETTSCEE
T ss_pred CCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCC--CCCCEEEEECCCCEEE
T ss_conf 32204554388868999856773001246520001000001123401210110022210000--2563344211442044
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 99779982889970479877999995999989999699919999887998248998248998699999069990999981
Q 004594 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (743)
Q Consensus 581 IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs 660 (743)
+||+++.+.+..+.++...+.++.|++++.++++++.|+.|++||++++.. +..+.+|...|.++.|+++ ++++++
T Consensus 185 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~~---~l~~~~ 260 (355)
T d1nexb2 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDK---FLVSAA 260 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEECSS---EEEEEC
T ss_pred EEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCC---EEEEEE
T ss_conf 430131100011000123321111112100210124563687630122111-1111111111111123210---033320
Q ss_pred CCCCEEEEECCCCEEEEEEECCC---CEEEECCCCEEEEEECCCEEEEEECCC-------------CEEEEEECCCCCEE
Q ss_conf 79929999889990779985257---124630799999996598499994631-------------13898621899989
Q 004594 661 NNSEIRYWSINNGSCAGVFKVCN---LMPIILKGCFILNSIFNCYLLLHRIFL-------------NLLSVSEWCNPDEI 724 (743)
Q Consensus 661 ~Dg~IrvWDl~tg~~v~~~~~~~---~i~~s~~g~~L~sgs~Dg~I~i~~~~i-------------~~l~v~~~~~~~~i 724 (743)
.|+.|++||++++.......... ...+.+++.+++++ .|+.|++|+... .+.++.+.+ ...+
T Consensus 261 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~~~~ 338 (355)
T d1nexb2 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLV 338 (355)
T ss_dssp TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-TEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCEEEEEECC-CEEE
T ss_conf 1111111111111100012468822999984999899998-0997999999999798888458999899999839-9199
Q ss_pred EEEECCCCEEEEC
Q ss_conf 9996999099967
Q 004594 725 STSSWKDSCCSHR 737 (743)
Q Consensus 725 aSgs~Dg~V~iWd 737 (743)
++++.||.+++|.
T Consensus 339 ~~~s~dg~~~l~~ 351 (355)
T d1nexb2 339 AAVEKDGQSFLEI 351 (355)
T ss_dssp EEEESSSCEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9998989099999
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.3e-25 Score=168.92 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=119.0
Q ss_pred EEEEEEECC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCE--------EEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 247984079-99968999948--99999999689929999779982--------88997047987799999599998999
Q 004594 546 TEFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLAT 614 (743)
Q Consensus 546 ~~~~~l~~H-~~~V~~i~fsp--dg~~Lasgs~Dg~V~IWd~~s~~--------~~~~l~~H~~~V~~iafspd~~~LaS 614 (743)
..+..+.+| ...|++++|+| ++.+|++|+.|++|+|||+...+ ....+..|.+.|.+++|++++.++++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCE
T ss_conf 50289907899988999981179997999994899779854058862156510025411365673779998999882201
Q ss_pred EEC--CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-------CCE
Q ss_conf 969--99199998879982489982489986999990699909999817992999988999077998525-------712
Q 004594 615 SSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC-------NLM 685 (743)
Q Consensus 615 gs~--DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~-------~~i 685 (743)
++. ++.+++|+.+++. ++..+.+|...|.+++|+|+++.++++++.|+.|++||+...+....+..+ ..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v 211 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV 211 (325)
T ss_dssp EECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred EECCCCCEEEEEEECCCC-CCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEE
T ss_conf 001244047888502331-1001200123432111123432068886211122111122110000000015777752776
Q ss_pred EEECC-CCEEEEEECCCEEEEEECCCCE--------------EEEEE-CCCCCEEEEEECCCCEEEECCC
Q ss_conf 46307-9999999659849999463113--------------89862-1899989999699909996799
Q 004594 686 PIILK-GCFILNSIFNCYLLLHRIFLNL--------------LSVSE-WCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 686 ~~s~~-g~~L~sgs~Dg~I~i~~~~i~~--------------l~v~~-~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
+|+|+ +.++++++.|+.|++|+..... ..++. ..++.++++++.|+.|++||-.
T Consensus 212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~ 281 (325)
T d1pgua1 212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281 (325)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred EECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 3034531000011233210134300122211111111111110000003689999999589939999999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-24 Score=165.06 Aligned_cols=170 Identities=21% Similarity=0.332 Sum_probs=132.0
Q ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEE
Q ss_conf 89999999968992999977998288997047987799999599998999969991999988799824899824899869
Q 004594 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (743)
Q Consensus 565 pdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~ 644 (743)
+....+++++.|+.|++||......+..+.+|...+.++.+ ++.++++++.|+.|++||++.... +..+.+|...+.
T Consensus 145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~ 221 (342)
T d2ovrb2 145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTS 221 (342)
T ss_dssp ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEE
T ss_pred CCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEE-EEEECCCCCCEE
T ss_conf 13330243358986999525234366787275444210068--999999995899399952556536-567416653205
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-----CEEEECCCCEEEEEECCCEEEEEECCC---------
Q ss_conf 999906999099998179929999889990779985257-----124630799999996598499994631---------
Q 004594 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN-----LMPIILKGCFILNSIFNCYLLLHRIFL--------- 710 (743)
Q Consensus 645 sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~-----~i~~s~~g~~L~sgs~Dg~I~i~~~~i--------- 710 (743)
++.++++ ++++++.|+.|++||+...+....+..+. ..++..++.++++++.|+.|++|+...
T Consensus 222 ~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~ 298 (342)
T d2ovrb2 222 GMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298 (342)
T ss_dssp EEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EEECCCC---EEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 7706899---9999748988999865544221112210001101000013798449990899899999999979899862
Q ss_pred --------CEEEEEECCCCCEEEEEECCCC----EEEECCCC
Q ss_conf --------1389862189998999969990----99967996
Q 004594 711 --------NLLSVSEWCNPDEISTSSWKDS----CCSHRELY 740 (743)
Q Consensus 711 --------~~l~v~~~~~~~~iaSgs~Dg~----V~iWd~~~ 740 (743)
.+.++.+.++...+++|+.||+ |++||-..
T Consensus 299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 347898897899998799989999968999704899993899
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=4e-25 Score=169.67 Aligned_cols=181 Identities=18% Similarity=0.367 Sum_probs=159.8
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 97899821799489982699999877534222237784012479840799996899994899999999689929999779
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (743)
Q Consensus 506 ~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~ 585 (743)
+..+++++.|+.+++|+...+ ..+..+.+|...+.+++|++++.+|++++.|+.|++|+..
T Consensus 113 ~~~~~~~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~ 173 (317)
T d1vyhc1 113 GDHIVSASRDKTIKMWEVQTG-------------------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173 (317)
T ss_dssp SSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCCCEEEEECCCC-------------------EEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEEEEC
T ss_conf 855776526752357511443-------------------0346871677763000016679999999279829997512
Q ss_pred CCEEEEEECCCCCCEEEEEECCCC--------------------CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf 982889970479877999995999--------------------989999699919999887998248998248998699
Q 004594 586 SFTVKSTLEEHTQWITDVRFSPSL--------------------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (743)
Q Consensus 586 s~~~~~~l~~H~~~V~~iafspd~--------------------~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~s 645 (743)
+.+....+.+|...+.+++|+|+. ..+++++.|+.|++||++++. ++..+.+|...|.+
T Consensus 174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~ 252 (317)
T d1vyhc1 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRG 252 (317)
T ss_dssp TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEE
T ss_pred CCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEECCCCCEEE
T ss_conf 54034788247787337998632564111034563034302588614751699789998889996-88999688998799
Q ss_pred EEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99906999099998179929999889990779985257----124630799999996598499994
Q 004594 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 646 l~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs~Dg~I~i~~ 707 (743)
++|+|++. +|++++.|+.|++||+++++++.++.+|. .+.|++++.+|++++.|++|++|+
T Consensus 253 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 253 VLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99879999-999997989499999999919999928999889999949999999992899499829
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.5e-24 Score=166.02 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=127.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 99996899994899999999689929999779982889-97047987799999599998999969991999988799824
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (743)
Q Consensus 554 H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~-~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~ 632 (743)
....+.+++|+|++.+|++|+.|+.|++||+++.+... ....|...|++++|+|++.+|++++.|+.|++||+.++...
T Consensus 135 ~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 214 (299)
T d1nr0a2 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 214 (299)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11123322111111111111111111111111111111111111111111111111111111111111111111111111
Q ss_pred --EEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCC----CEEEECCCCEEEEEECCCEEE
Q ss_conf --899824899869999906999099998179929999889990779985--257----124630799999996598499
Q 004594 633 --LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--VCN----LMPIILKGCFILNSIFNCYLL 704 (743)
Q Consensus 633 --l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~--~~~----~i~~s~~g~~L~sgs~Dg~I~ 704 (743)
...+.+|...|++++|+|++. ++++++.|+.|++||++++.....+. .+. ...+.+++.+|++++.|++|+
T Consensus 215 ~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~ 293 (299)
T d1nr0a2 215 AHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293 (299)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf 11111111111111112466645-13888289979999899997314898348988968999977989999992899799
Q ss_pred EEECC
Q ss_conf 99463
Q 004594 705 LHRIF 709 (743)
Q Consensus 705 i~~~~ 709 (743)
+|+..
T Consensus 294 iWdl~ 298 (299)
T d1nr0a2 294 FWNVP 298 (299)
T ss_dssp EEECC
T ss_pred EEECC
T ss_conf 99444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.6e-24 Score=164.55 Aligned_cols=205 Identities=20% Similarity=0.264 Sum_probs=126.3
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+++++|+.|++|++|+...+ +.+.++.+|.+.|.+++|+++ +|++|+.|+.+++|+...
T Consensus 28 ~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 28 NRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET 86 (342)
T ss_dssp TEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCCCC
T ss_conf 99999918990999989999-------------------799999488999899994798--632100000111111110
Q ss_pred CEEEEEECCCCCCEEE--------------------------------------EEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 8288997047987799--------------------------------------99959999899996999199998879
Q 004594 587 FTVKSTLEEHTQWITD--------------------------------------VRFSPSLSRLATSSADRTVRVWDTEN 628 (743)
Q Consensus 587 ~~~~~~l~~H~~~V~~--------------------------------------iafspd~~~LaSgs~DgtIriWDi~~ 628 (743)
.........+...+.. ..+.+....+++++.|+.|++||++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 166 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 00000012333047652024652212344403787403556300111001111000001333024335898699952523
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC--EEEECCCCEEEEEECCCEEEEE
Q ss_conf 98248998248998699999069990999981799299998899907799852571--2463079999999659849999
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL--MPIILKGCFILNSIFNCYLLLH 706 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~--i~~s~~g~~L~sgs~Dg~I~i~ 706 (743)
.. ++..+.+|...+..+.++ +. .+++++.|+.|++||++.++++..+..|.. .++.+++.++++++.|+.+++|
T Consensus 167 ~~-~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 167 ET-CLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242 (342)
T ss_dssp TE-EEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CE-EEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEE
T ss_conf 43-667872754442100689--99-999995899399952556536567416653205770689999997489889998
Q ss_pred ECCCC---------------EEEEEECCCCCEEEEEECCCCEEEECC
Q ss_conf 46311---------------389862189998999969990999679
Q 004594 707 RIFLN---------------LLSVSEWCNPDEISTSSWKDSCCSHRE 738 (743)
Q Consensus 707 ~~~i~---------------~l~v~~~~~~~~iaSgs~Dg~V~iWd~ 738 (743)
+.... ..++.+. +..+++++.||+|++||-
T Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred ECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEEC
T ss_conf 655442211122100011010000137--984499908998999999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=9.7e-24 Score=161.04 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=153.3
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+++++|+.|++|++|+...+ +.+..+.+|.+.|++++|+|+ .+|++|+.|++|++|+...
T Consensus 24 ~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~ 83 (355)
T d1nexb2 24 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 83 (355)
T ss_dssp TEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTT
T ss_pred CEEEEEECCCEEEEEECCCC-------------------CEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCC
T ss_conf 99999918990999989999-------------------399999789998899998699-9999996452443211111
Q ss_pred CEEEEEECCCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCCCC----------------------------------
Q ss_conf 828899704798--77999995999989999699919999887998----------------------------------
Q 004594 587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENPD---------------------------------- 630 (743)
Q Consensus 587 ~~~~~~l~~H~~--~V~~iafspd~~~LaSgs~DgtIriWDi~~~~---------------------------------- 630 (743)
.........+.. .+....+.+++..+++++.|+.|++||++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d1nexb2 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163 (355)
T ss_dssp TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCC
T ss_conf 11111110011111111111112322045543888689998567730012465200010000011234012101100222
Q ss_pred ----------------------------EEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf ----------------------------2489982489986999990699909999817992999988999077998525
Q 004594 631 ----------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC 682 (743)
Q Consensus 631 ----------------------------~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~ 682 (743)
..+..+.++...+.++.|++++. ++++++.|+.|++||++++.++..+.+|
T Consensus 164 v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCE-EEECCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 100002563344211442044430131100011000123321111112100-2101245636876301221111111111
Q ss_pred CC--EEEECCCCEEEEEECCCEEEEEECCCCEEEEE----------ECCCCCEEEEEECCCCEEEECCC
Q ss_conf 71--24630799999996598499994631138986----------21899989999699909996799
Q 004594 683 NL--MPIILKGCFILNSIFNCYLLLHRIFLNLLSVS----------EWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 683 ~~--i~~s~~g~~L~sgs~Dg~I~i~~~~i~~l~v~----------~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
.. .++..++.++++++.|+.|++|+.......+. ...+.+.+++++.|+.|++||-.
T Consensus 243 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~ 311 (355)
T d1nexb2 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 311 (355)
T ss_dssp SSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETT
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECC
T ss_conf 111111123210033320111111111111110001246882299998499989999809979999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.9e-23 Score=155.73 Aligned_cols=154 Identities=19% Similarity=0.341 Sum_probs=78.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 24798407999968999948999999996899299997799828899704798779999959999899996999199998
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWD 625 (743)
.....+..|...|.++.+. ...+++++.|+.|++||+++.+.+..+.++...|.++.++ +..+++++.|++|++||
T Consensus 129 ~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d 204 (293)
T d1p22a2 129 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD 204 (293)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEC--CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEE
T ss_conf 2121000113543110000--0220110699860410078883889971554453221689--87588765899899986
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCC---------CEEEEEEECCCC--EEEECCCCEE
Q ss_conf 87998248998248998699999069990999981799299998899---------907799852571--2463079999
Q 004594 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKVCNL--MPIILKGCFI 694 (743)
Q Consensus 626 i~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~t---------g~~v~~~~~~~~--i~~s~~g~~L 694 (743)
+++... +..+.++...+..+. +++. ++++++.|+.|++||+.. ..++..+.+|.. ..+..++.+|
T Consensus 205 ~~~~~~-~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l 280 (293)
T d1p22a2 205 IECGAC-LRVLEGHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI 280 (293)
T ss_dssp TTTCCE-EEEECCCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCE
T ss_pred CCCCEE-EEEECCCCEEEEECC--CCCE-EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEE
T ss_conf 655614-665214310000014--5410-799986799799998888864445677545578458899889999719999
Q ss_pred EEEECCCEEEEEE
Q ss_conf 9996598499994
Q 004594 695 LNSIFNCYLLLHR 707 (743)
Q Consensus 695 ~sgs~Dg~I~i~~ 707 (743)
++++.|++|++|+
T Consensus 281 ~s~s~Dg~i~iWD 293 (293)
T d1p22a2 281 VSSSHDDTILIWD 293 (293)
T ss_dssp EECCSSSEEEEEC
T ss_pred EEEECCCEEEEEC
T ss_conf 9992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=8.3e-23 Score=155.23 Aligned_cols=193 Identities=13% Similarity=0.164 Sum_probs=135.4
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCC-----CCEEEEEECCCCEEE
Q ss_conf 789982179948998269999987753422223778401247984079999689999489-----999999968992999
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKAVL 581 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspd-----g~~Lasgs~Dg~V~I 581 (743)
.++++++.|+.+++|.................. .....+...+.+++|.++ +.++++++.|+.|++
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECC---------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCEEEEECCCCCCEEEEECCCCCE---------EEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEE
T ss_conf 689999489919999822898205651245632---------43115789668999844788654217999838981999
Q ss_pred EECCCCE------------------EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE------EEE
Q ss_conf 9779982------------------8899704798779999959999899996999199998879982489------982
Q 004594 582 WCTESFT------------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR------TFT 637 (743)
Q Consensus 582 Wd~~s~~------------------~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~------~l~ 637 (743)
|++.... .......+...+.+++|+|++ +|++|+.|++|++||+.++.. +. .+.
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~ 228 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP-LYNFESQHSMI 228 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE-EEEEECCC---
T ss_pred EEEECCCCCCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCC-CCCCCCCCCCC
T ss_conf 8740477534102331032000145100025789867899978999-899993898299986023321-10000111112
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCC---EEEEECCCCEEEEEEE-------------CC----CCEEEECCCCEEEEE
Q ss_conf 489986999990699909999817992---9999889990779985-------------25----712463079999999
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYWSINNGSCAGVFK-------------VC----NLMPIILKGCFILNS 697 (743)
Q Consensus 638 gh~~~V~sl~fsp~g~~llaSgs~Dg~---IrvWDl~tg~~v~~~~-------------~~----~~i~~s~~g~~L~sg 697 (743)
+|...|.+++|+|++. +|++++.|+. |++||+.+++++..+. +| ..++|+|++.+|+++
T Consensus 229 ~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~ 307 (393)
T d1sq9a_ 229 NNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307 (393)
T ss_dssp CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred CCCCEEEECCCCCCCC-EEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEE
T ss_conf 4256387700466532-011242898842100103532134443115666643102320235866600138988806987
Q ss_pred ECCCEEEEEECCCC
Q ss_conf 65984999946311
Q 004594 698 IFNCYLLLHRIFLN 711 (743)
Q Consensus 698 s~Dg~I~i~~~~i~ 711 (743)
+.|++|++|+....
T Consensus 308 s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 308 GWDGKLRFWDVKTK 321 (393)
T ss_dssp ETTSEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
T ss_conf 79998999999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=7.7e-23 Score=155.45 Aligned_cols=235 Identities=9% Similarity=-0.052 Sum_probs=151.0
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 42247899821898915899533236864467997899821799489982699999877534222237784012479840
Q 004594 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (743)
Q Consensus 473 ~l~~~~s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 552 (743)
.+...+...++.+.|+|++ +++++|+.|++|++|+..... ....+....
T Consensus 5 ~~~~~h~d~I~~l~fsp~~---------------~~L~s~s~Dg~v~iwd~~~~~----------------~~~~~~~~~ 53 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSL 53 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEE
T ss_pred ECCCCCCCCEEEEEEECCC---------------CEEEEEECCCEEEEEECCCCC----------------CCEEEEEEC
T ss_conf 7688998978889995899---------------999999799929999756998----------------636898855
Q ss_pred CCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEECCCCCC-EEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 79999689999489-999999968992999977998288997047987-7999995999989999699919999887998
Q 004594 553 ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 553 ~H~~~V~~i~fspd-g~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~-V~~iafspd~~~LaSgs~DgtIriWDi~~~~ 630 (743)
+|..+|+|++|+|+ +.+|++|+.|+.|++|++...........+... .....+.++...+++++.|+++++||++...
T Consensus 54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred CCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 89998899999589997899812653114542044320000011111111111111111111110122211102023444
Q ss_pred EEE---EEEECC--CCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---C-C----CEEEECCCCEEEEE
Q ss_conf 248---998248--998699999069990999981799299998899907799852---5-7----12463079999999
Q 004594 631 YSL---RTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV---C-N----LMPIILKGCFILNS 697 (743)
Q Consensus 631 ~~l---~~l~gh--~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~---~-~----~i~~s~~g~~L~sg 697 (743)
... .....+ ......+.+.+.+. .+++++.|+.|++||++.......... . . ...+..++..++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (342)
T d1yfqa_ 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp TBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred CCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 3302300024300120000010001687-024651798478876056763411121025422101467636999878865
Q ss_pred ECCCEEEEEECCC---------------------------CEEEEEECCCCCEEEEEECCCCEEEECCC
Q ss_conf 6598499994631---------------------------13898621899989999699909996799
Q 004594 698 IFNCYLLLHRIFL---------------------------NLLSVSEWCNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 698 s~Dg~I~i~~~~i---------------------------~~l~v~~~~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
+.|+.+.+|.... .+.++++.++..+|++|+.||+|++||-.
T Consensus 213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 489959999805986401112351256555314777623543159966984479998799989999999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=8.7e-21 Score=142.63 Aligned_cols=223 Identities=10% Similarity=-0.015 Sum_probs=153.7
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 99821898915899533236864467997899821799--4899826999998775342222377840124798407999
Q 004594 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD--NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (743)
Q Consensus 479 s~~~s~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~--~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~ 556 (743)
...+..+.|+||+ ++++.++.|. .+++|+...+ ....+..|..
T Consensus 42 ~~~v~~~~~spDg---------------~~l~~~~~~~g~~v~v~d~~~~--------------------~~~~~~~~~~ 86 (360)
T d1k32a3 42 PLRIRYVRRGGDT---------------KVAFIHGTREGDFLGIYDYRTG--------------------KAEKFEENLG 86 (360)
T ss_dssp CSCEEEEEECSSS---------------EEEEEEEETTEEEEEEEETTTC--------------------CEEECCCCCC
T ss_pred CCCEEEEEECCCC---------------CEEEEEECCCCCEEEEEECCCC--------------------CEEEEECCCC
T ss_conf 9988889998999---------------9999999289989999989999--------------------4887508971
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEEC
Q ss_conf 968999948999999996899299997799828899704798779999959999899996----------9991999988
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT 626 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs----------~DgtIriWDi 626 (743)
.|.+++|+|++++|++++.++.+++|++.+.+....+..|...+.+++|+|++.+|+.+. .++.+++||+
T Consensus 87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~ 166 (360)
T d1k32a3 87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166 (360)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred EEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECC
T ss_conf 27741211454321000111110000012221000000135520230121322566521233121100025654266304
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEE-------EEEEECCC----CEEE--------
Q ss_conf 7998248998248998699999069990999981799299998899907-------79985257----1246--------
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKVCN----LMPI-------- 687 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~-------v~~~~~~~----~i~~-------- 687 (743)
..+. ...+..+...+..+.|+|+++ .|++++.|+.+++||...... ...+..+. .+.+
T Consensus 167 ~~~~--~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 243 (360)
T d1k32a3 167 EGRK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243 (360)
T ss_dssp TTTE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred CCCC--EEEECCCCCCCCCCCCCCCCC-EEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCC
T ss_conf 5571--353035432211001257799-9999959985575333544023203641179852469601206877767155
Q ss_pred ----------------------------ECC-------------CCEEEEEECCCEEEEEECCC--------CEEEEEEC
Q ss_conf ----------------------------307-------------99999996598499994631--------13898621
Q 004594 688 ----------------------------ILK-------------GCFILNSIFNCYLLLHRIFL--------NLLSVSEW 718 (743)
Q Consensus 688 ----------------------------s~~-------------g~~L~sgs~Dg~I~i~~~~i--------~~l~v~~~ 718 (743)
.++ +.+++.++.++.+.+|+... .+..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~S 323 (360)
T d1k32a3 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLS 323 (360)
T ss_dssp CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEEC
T ss_pred CCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEC
T ss_conf 31136526654001012476752675413898569999735997069996489987999979997498864886879999
Q ss_pred CCCCEEEEEECCCCEEEECCC
Q ss_conf 899989999699909996799
Q 004594 719 CNPDEISTSSWKDSCCSHREL 739 (743)
Q Consensus 719 ~~~~~iaSgs~Dg~V~iWd~~ 739 (743)
+++..|++++.||.|++||-.
T Consensus 324 pDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 324 ADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp TTSCEEEEEETTSCEEEEESS
T ss_pred CCCCEEEEEECCCEEEEEECC
T ss_conf 989899999789949999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.3e-21 Score=147.80 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=98.0
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCC---------------------------CCCCCCCCCCC-EEEEEEEEECC--C
Q ss_conf 978998217994899826999998775---------------------------34222237784-01247984079--9
Q 004594 506 DRFVDDGSLDDNVESFLSPDDADPRDR---------------------------VGRSAEVGKGF-TFTEFQLIPAS--T 555 (743)
Q Consensus 506 ~~~lasGs~D~~V~iw~~~~~~~~~~~---------------------------~~~~~~~~~~~-~~~~~~~l~~H--~ 555 (743)
+.++++|+.|+.|++|+.......... ...+|+..... ..........+ .
T Consensus 69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T d1yfqa_ 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCC
T ss_conf 97899812653114542044320000011111111111111111111110122211102023444330230002430012
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 9968999948999999996899299997799828---899704798779999959-999899996999199998879982
Q 004594 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 556 ~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~---~~~l~~H~~~V~~iafsp-d~~~LaSgs~DgtIriWDi~~~~~ 631 (743)
....+..+.+.+..+++++.|+.|++|++..... ......+...+.+..+.+ ++..+++++.||.+.+|+......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~ 228 (342)
T d1yfqa_ 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCC
T ss_conf 00000100016870246517984788760567634111210254221014676369998788654899599998059864
Q ss_pred E--------EE------EEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEE
Q ss_conf 4--------89------982489986999990699909999817992999988999077998525---712463079999
Q 004594 632 S--------LR------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFI 694 (743)
Q Consensus 632 ~--------l~------~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L 694 (743)
. .. ...+|...|.+++|+|++. +|++|+.||.|++||+++++++..+..+ ..+++++++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l 307 (342)
T d1yfqa_ 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEE
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEE
T ss_conf 011123512565553147776235431599669844-7999879998999999989498870589998799999479999
Q ss_pred EEEECCCEEEEEEC
Q ss_conf 99965984999946
Q 004594 695 LNSIFNCYLLLHRI 708 (743)
Q Consensus 695 ~sgs~Dg~I~i~~~ 708 (743)
++++.|.++++|..
T Consensus 308 ~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 308 CLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECTHHHHCSS
T ss_pred EEEECCCCEEEEEE
T ss_conf 99991992788301
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.4e-20 Score=138.25 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=72.7
Q ss_pred ECCCCCEEEEEECCC-CEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 948999999996899-29999779982889970-4798779999959999899996999199998879982489982489
Q 004594 563 FSPDGKLLATGGHDK-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (743)
Q Consensus 563 fspdg~~Lasgs~Dg-~V~IWd~~s~~~~~~l~-~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~ 640 (743)
+++++..+++++.|+ .|++|++........+. .|...|++++|+|++.+|++++.|+.|++||+.++......+.+|.
T Consensus 126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~ 205 (287)
T d1pgua2 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT 205 (287)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 52147511100022100021000122100012102478536999516765211011111100000023321100011111
Q ss_pred CCEEEEEEECCC---------CEEEEEEECCCCEEEEECCC-CEEEEEEECCCCEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 986999990699---------90999981799299998899-90779985257124630799999996598499994631
Q 004594 641 TTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINN-GSCAGVFKVCNLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 641 ~~V~sl~fsp~g---------~~llaSgs~Dg~IrvWDl~t-g~~v~~~~~~~~i~~s~~g~~L~sgs~Dg~I~i~~~~i 710 (743)
..|.+++|+|.+ ..++++++.|+.|++||+++ .+++..+.+|.. .+
T Consensus 206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~------------------------~V 261 (287)
T d1pgua2 206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD------------------------GV 261 (287)
T ss_dssp SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT------------------------CE
T ss_pred CCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCC------------------------CE
T ss_conf 111000001365410012678870276649995999888999758999278789------------------------85
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEC
Q ss_conf 138986218999899996999099967
Q 004594 711 NLLSVSEWCNPDEISTSSWKDSCCSHR 737 (743)
Q Consensus 711 ~~l~v~~~~~~~~iaSgs~Dg~V~iWd 737 (743)
..+.+ .+ ...+++++.|++|++|+
T Consensus 262 ~~v~~--~~-~~~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 262 NNLLW--ET-PSTLVSSGADACIKRWN 285 (287)
T ss_dssp EEEEE--EE-TTEEEEEETTSCEEEEE
T ss_pred EEEEE--CC-CCEEEEEECCCEEEEEE
T ss_conf 89999--89-99899997999299999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=9.5e-20 Score=136.16 Aligned_cols=145 Identities=20% Similarity=0.285 Sum_probs=109.7
Q ss_pred CCCEEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE-EECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 997899821799-4899826999998775342222377840124798-40799996899994899999999689929999
Q 004594 505 MDRFVDDGSLDD-NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (743)
Q Consensus 505 ~~~~lasGs~D~-~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IW 582 (743)
.+..++.++.|+ .+++|.... ...... ...|.+.|++++|+|++.+|++|+.|+.|++|
T Consensus 129 ~~~~~~v~~~~~~~v~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 129 SQNYVAVGLEEGNTIQVFKLSD-------------------LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp CSSEEEEEETTTSCEEEEETTE-------------------EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCC-------------------CCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 4751110002210002100012-------------------210001210247853699951676521101111110000
Q ss_pred ECCCCEEEE-EECCCCCCEEEEEECCC----------CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf 779982889-97047987799999599----------9989999699919999887998248998248998699999069
Q 004594 583 CTESFTVKS-TLEEHTQWITDVRFSPS----------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (743)
Q Consensus 583 d~~s~~~~~-~l~~H~~~V~~iafspd----------~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~ 651 (743)
|+.+..... .+.+|...|.+++|+|. +.+|++++.|++|++||++.+...+..+.+|...|++++|+|+
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~ 269 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 00233211000111111110000013654100126788702766499959998889997589992787898589999899
Q ss_pred CCEEEEEEECCCCEEEEEC
Q ss_conf 9909999817992999988
Q 004594 652 KEDLLCSCDNNSEIRYWSI 670 (743)
Q Consensus 652 g~~llaSgs~Dg~IrvWDl 670 (743)
+ .+++++.|+.|++|++
T Consensus 270 ~--~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 S--TLVSSGADACIKRWNV 286 (287)
T ss_dssp T--EEEEEETTSCEEEEEE
T ss_pred C--EEEEEECCCEEEEEEE
T ss_conf 9--8999979992999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=3.1e-19 Score=132.94 Aligned_cols=189 Identities=6% Similarity=-0.064 Sum_probs=146.3
Q ss_pred EEEEEEC-CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 1898915-899533236864467997899821799489982699999877534222237784012479840799996899
Q 004594 483 SLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (743)
Q Consensus 483 s~i~fs~-d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i 561 (743)
-..-|+| || ++++.++ ++.+.+|+...+ . +..+ +|...|.++
T Consensus 6 ~~~~fSP~dG---------------~~~a~~~-~g~v~v~d~~~~-------------------~-~~~~-~~~~~v~~~ 48 (360)
T d1k32a3 6 FAEDFSPLDG---------------DLIAFVS-RGQAFIQDVSGT-------------------Y-VLKV-PEPLRIRYV 48 (360)
T ss_dssp GEEEEEECGG---------------GCEEEEE-TTEEEEECTTSS-------------------B-EEEC-SCCSCEEEE
T ss_pred HCCCCCCCCC---------------CEEEEEE-CCEEEEEECCCC-------------------C-EEEC-CCCCCEEEE
T ss_conf 0051468899---------------9999998-996999989999-------------------4-8991-699988889
Q ss_pred EECCCCCEEEEEECCC--CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC
Q ss_conf 9948999999996899--29999779982889970479877999995999989999699919999887998248998248
Q 004594 562 HFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (743)
Q Consensus 562 ~fspdg~~Lasgs~Dg--~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh 639 (743)
+|+||+++|++++.+. .|++||.++++. ..+..|...|.+++|+|++++|++++.++.+++|++..+.. ...+..|
T Consensus 49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~ 126 (360)
T d1k32a3 49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSR 126 (360)
T ss_dssp EECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECS
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCE-EEEEECC
T ss_conf 998999999999928998999998999948-87508971277412114543210001111100000122210-0000013
Q ss_pred CCCEEEEEEECCCCEEEEEE---------ECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99869999906999099998---------17992999988999077998525---7124630799999996598499994
Q 004594 640 STTVMSLDFHPSKEDLLCSC---------DNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~llaSg---------s~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~I~i~~ 707 (743)
...+.+++|+|++..++++. ..++.+++||+.++++....... ..+.++++|.+|+.++.++.+.+|+
T Consensus 127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d 206 (360)
T d1k32a3 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206 (360)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCC
T ss_conf 55202301213225665212331211000256542663045571353035432211001257799999995998557533
Q ss_pred CCC
Q ss_conf 631
Q 004594 708 IFL 710 (743)
Q Consensus 708 ~~i 710 (743)
...
T Consensus 207 ~~~ 209 (360)
T d1k32a3 207 RVV 209 (360)
T ss_dssp SSS
T ss_pred CCC
T ss_conf 354
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=5.4e-19 Score=131.47 Aligned_cols=214 Identities=9% Similarity=-0.021 Sum_probs=129.8
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 89982179948998269999987753422223778401247984079999689999489999999968992999977998
Q 004594 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (743)
Q Consensus 508 ~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~ 587 (743)
++++.+.|+.|.+|+... .+.+.++..|. .+..++|+|||+++++++.|++|++||+.++
T Consensus 34 ~~V~~~~dg~v~vwD~~t-------------------~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~ 93 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDS-------------------KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAK 93 (426)
T ss_dssp EEEEETTTTEEEEEETTT-------------------CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCCEEEEEECCC-------------------CCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 999975999799999999-------------------95999996899-8038999899999999958998899975688
Q ss_pred EEEEE-----ECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCE------------------------------
Q ss_conf 28899-----704798779999959999899-996999199998879982------------------------------
Q 004594 588 TVKST-----LEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDY------------------------------ 631 (743)
Q Consensus 588 ~~~~~-----l~~H~~~V~~iafspd~~~La-Sgs~DgtIriWDi~~~~~------------------------------ 631 (743)
+.... ..+|...+.+++|+|++++++ ++..++.+++||......
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 173 (426)
T d1hzua2 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173 (426)
T ss_dssp SCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred CEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCC
T ss_conf 60489998678887645885002688987999635897699985776412578622677736436427885038998787
Q ss_pred ------------------------EEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEE---------
Q ss_conf ------------------------48998248998699999069990999981799299998899907799---------
Q 004594 632 ------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--------- 678 (743)
Q Consensus 632 ------------------------~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~--------- 678 (743)
......++...+..+.|+|++++++++...+..+.+|+..+++.+..
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
T d1hzua2 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253 (426)
T ss_dssp SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred CCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCC
T ss_conf 87888852789769999924665204577566775376137788867886420110000000255627887505874443
Q ss_pred ---------------------------------------------EECC----CCEEEECCCCEEEE-------EECCCE
Q ss_conf ---------------------------------------------8525----71246307999999-------965984
Q 004594 679 ---------------------------------------------FKVC----NLMPIILKGCFILN-------SIFNCY 702 (743)
Q Consensus 679 ---------------------------------------------~~~~----~~i~~s~~g~~L~s-------gs~Dg~ 702 (743)
+.+| ..++++|++.++++ ++.+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t 333 (426)
T d1hzua2 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333 (426)
T ss_dssp SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC
T ss_pred CCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCE
T ss_conf 42011006987745774157896598852256652033025868986688763678748998618885067988022887
Q ss_pred EEEEECCC---------------------CEEEEEECCCCCEEE-EE----ECCCCEEEECCCCC
Q ss_conf 99994631---------------------138986218999899-99----69990999679964
Q 004594 703 LLLHRIFL---------------------NLLSVSEWCNPDEIS-TS----SWKDSCCSHRELYL 741 (743)
Q Consensus 703 I~i~~~~i---------------------~~l~v~~~~~~~~ia-Sg----s~Dg~V~iWd~~~i 741 (743)
+++|+... .+..+.+.+++.+++ ++ +.++.|++||..-+
T Consensus 334 v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred EEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCC
T ss_conf 99998987876708950211025677885189879999999999997248888982999999987
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=2.4e-18 Score=127.42 Aligned_cols=164 Identities=11% Similarity=0.013 Sum_probs=115.1
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEE
Q ss_conf 467997899821799489982699999877534222237784012479840799996899994899999-9996899299
Q 004594 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAV 580 (743)
Q Consensus 502 l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~L-asgs~Dg~V~ 580 (743)
+.+.++++++++.|+++.+|+...+ +.....++....+|.+.+.+..|+|||++| +++..+++|+
T Consensus 69 fSpDG~~l~~~s~dg~v~~~d~~t~--------------~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~ 134 (432)
T d1qksa2 69 LSASGRYLFVIGRDGKVNMIDLWMK--------------EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134 (432)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSS--------------SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred ECCCCCEEEEECCCCCEEEEEEECC--------------CCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEE
T ss_conf 8899999999828999789981089--------------81288998448898776984321888888999817898279
Q ss_pred EEECCCCEEEEEECCC-----------CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 9977998288997047-----------9877999995999989-999699919999887998248998248998699999
Q 004594 581 LWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (743)
Q Consensus 581 IWd~~s~~~~~~l~~H-----------~~~V~~iafspd~~~L-aSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~f 648 (743)
+||..+++++..+..| ......+.++|++..+ ++...++.|.+||..+..........+...+..+.|
T Consensus 135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~ 214 (432)
T d1qksa2 135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL 214 (432)
T ss_dssp EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred EEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEE
T ss_conf 99076554225402477643522016888505899878999899998168829999843787522799833675426538
Q ss_pred ECCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 0699909999817992999988999077998
Q 004594 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 649 sp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
+|+++++++++..+..+.+||..+++.+..+
T Consensus 215 spdg~~~~va~~~~~~v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 215 DGSHRYFITAANARNKLVVIDTKEGKLVAIE 245 (432)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 8988799995166636777614452688872
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=5.6e-18 Score=125.14 Aligned_cols=181 Identities=9% Similarity=-0.053 Sum_probs=127.2
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
-++++.+-|++|.+|+... .+.+..+..+. .+..++|+|||+++++++.|+.|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t-------------------~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGST-------------------YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEECCCCEEEEEECCC-------------------CCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 8999976999799998999-------------------83999973799-713799889999999982899978998108
Q ss_pred CEE--EEE---ECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEC-----------CCCCEEEEEEE
Q ss_conf 828--899---70479877999995999989-99969991999988799824899824-----------89986999990
Q 004594 587 FTV--KST---LEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH 649 (743)
Q Consensus 587 ~~~--~~~---l~~H~~~V~~iafspd~~~L-aSgs~DgtIriWDi~~~~~~l~~l~g-----------h~~~V~sl~fs 649 (743)
.+. ... ..+|.+.+.+.+|+||++++ +++..+++|++||..++.. +..+.. +......+.++
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC-EEEECCCCCCCCCEECCCCCCEEEEEEC
T ss_conf 981288998448898776984321888888999817898279990765542-2540247764352201688850589987
Q ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CC---CCEEEECCCCEEEEEECCC-EEEEEEC
Q ss_conf 6999099998179929999889990779985--25---7124630799999996598-4999946
Q 004594 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--VC---NLMPIILKGCFILNSIFNC-YLLLHRI 708 (743)
Q Consensus 650 p~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~--~~---~~i~~s~~g~~L~sgs~Dg-~I~i~~~ 708 (743)
+++..++++...++.|.+||..+.+...... .. ..+.++|+|+++++++.++ .+.+++.
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEEC
T ss_conf 89998999981688299998437875227998336754265388988799995166636777614
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=2.9e-15 Score=108.19 Aligned_cols=209 Identities=16% Similarity=0.126 Sum_probs=127.9
Q ss_pred CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEEC
Q ss_conf 789-98217994899826999998775342222377840124798407999968999948999999-9968992999977
Q 004594 507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCT 584 (743)
Q Consensus 507 ~~l-asGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~La-sgs~Dg~V~IWd~ 584 (743)
+++ ++++.++.|.+|+.... ..+..+..+.. +..+.|++++..++ ++..++.+.+|+.
T Consensus 44 ~~l~v~~~~~~~i~v~d~~t~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
T d1l0qa2 44 TKVYVANAHSNDVSIIDTATN-------------------NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (301)
T ss_dssp SEEEEEEGGGTEEEEEETTTT-------------------EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCC-------------------CEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 999999789998999999989-------------------41032000246-4311000111111111111100110012
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf 9982889970479877999995999989-999699919999887998248998248998699999069990999981799
Q 004594 585 ESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 585 ~s~~~~~~l~~H~~~V~~iafspd~~~L-aSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg 663 (743)
.+.+....+.. ...+.+++|+|++..+ +++..+..+.+|+..+... +..+.. ...+..+.++|++..+++++..++
T Consensus 104 ~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (301)
T d1l0qa2 104 TSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSV-GRSPKGIAVTPDGTKVYVANFDSM 180 (301)
T ss_dssp TTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTT
T ss_pred CCCEEEEECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCE-EEECCC-CCCCEEEEEECCCCCEEEECCCCC
T ss_conf 43024320244-444237876058971554201111001100014630-353156-788428886046540131012111
Q ss_pred CEEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEEC---CCEEEEEECCC-----------CEEEEEECCCCCEE-E
Q ss_conf 2999988999077998525---71246307999999965---98499994631-----------13898621899989-9
Q 004594 664 EIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIF---NCYLLLHRIFL-----------NLLSVSEWCNPDEI-S 725 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~---Dg~I~i~~~~i-----------~~l~v~~~~~~~~i-a 725 (743)
.+.+|+....+....+... ..+.+.+++.+++.+.. ++.+.+|+... ....+.+.+++.++ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~v 260 (301)
T d1l0qa2 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYV 260 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 11111111000111013357750311011110111100210000232365699819999848998779999189899999
Q ss_pred EEECCCCEEEECC
Q ss_conf 9969990999679
Q 004594 726 TSSWKDSCCSHRE 738 (743)
Q Consensus 726 Sgs~Dg~V~iWd~ 738 (743)
+++.|++|++||-
T Consensus 261 a~~~~~~i~v~D~ 273 (301)
T d1l0qa2 261 ALSFCNTVSVIDT 273 (301)
T ss_dssp EETTTTEEEEEET
T ss_pred EECCCCEEEEEEC
T ss_conf 9899996999999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=6.2e-15 Score=106.18 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=75.2
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC--CCCCEEEEEECCCCCEE-EEEECCCCEEEEE
Q ss_conf 78998217994899826999998775342222377840124798407--99996899994899999-9996899299997
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLL-ATGGHDKKAVLWC 583 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~i~fspdg~~L-asgs~Dg~V~IWd 583 (743)
+++++++.|++|.+|+.... +.+..+.. +...+.+++|+|||+++ ++++.++.|.+||
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D 62 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCC-------------------EEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 69999767998999999999-------------------49999987788998237999999899999978999499999
Q ss_pred CCCCEEEEEECCCCC-----CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf 799828899704798-----779999959999899996------------999199998879982489982489986999
Q 004594 584 TESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (743)
Q Consensus 584 ~~s~~~~~~l~~H~~-----~V~~iafspd~~~LaSgs------------~DgtIriWDi~~~~~~l~~l~gh~~~V~sl 646 (743)
+.+++.+..+..+.. .+..++|+|++.+++++. .+..+.+||..++.. +..+. +...+.++
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~ 140 (337)
T d1pbyb_ 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred CCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEE-EEECC-CCCCCEEE
T ss_conf 99992988872477731254025489868775799950477620342034555212035667759-88414-56872189
Q ss_pred EEECCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 990699909999817992999988999077998
Q 004594 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (743)
Q Consensus 647 ~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~ 679 (743)
+|+|+++.++ +++ +.+.+||..+++....+
T Consensus 141 ~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~ 170 (337)
T d1pbyb_ 141 AWARDGSKLY-GLG--RDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp EECTTSSCEE-EES--SSEEEEETTTTEEEEEE
T ss_pred EECCCCCEEE-EEC--CCCCEEEEECCCEEEEE
T ss_conf 9868888899-971--77505663037278886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.73 E-value=1.5e-15 Score=109.97 Aligned_cols=158 Identities=8% Similarity=0.051 Sum_probs=79.7
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEECCC--CCCEEEEEECCCCC-EE--EEEECCCEEEEEECC
Q ss_conf 999968999948999999996-8992999977998288997047--98779999959999-89--999699919999887
Q 004594 554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLS-RL--ATSSADRTVRVWDTE 627 (743)
Q Consensus 554 H~~~V~~i~fspdg~~Lasgs-~Dg~V~IWd~~s~~~~~~l~~H--~~~V~~iafspd~~-~L--aSgs~DgtIriWDi~ 627 (743)
+...+..+.|+|++++++++. .+..+.+++..+.+.+..+... .....++.+..... .+ ++...|+.+.+|+..
T Consensus 205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECC
T ss_conf 67753761377888678864201100000002556278875058744434201100698774577415789659885225
Q ss_pred CCC------EEEEEEECCCCCEEEEEEECCCCEEEE------EEECCCCEEEEECCCCEEEEEEECC-------------
Q ss_conf 998------248998248998699999069990999------9817992999988999077998525-------------
Q 004594 628 NPD------YSLRTFTGHSTTVMSLDFHPSKEDLLC------SCDNNSEIRYWSINNGSCAGVFKVC------------- 682 (743)
Q Consensus 628 ~~~------~~l~~l~gh~~~V~sl~fsp~g~~lla------Sgs~Dg~IrvWDl~tg~~v~~~~~~------------- 682 (743)
... .....+.+|...+.+++|+|++..+++ +++.|++|+|||+.++++...+..+
T Consensus 285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv 364 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364 (426)
T ss_dssp TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred CCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCE
T ss_conf 66520330258689866887636787489986188850679880228879999898787670895021102567788518
Q ss_pred CCEEEECCCCEEEEE-----ECCCEEEEEECCCC
Q ss_conf 712463079999999-----65984999946311
Q 004594 683 NLMPIILKGCFILNS-----IFNCYLLLHRIFLN 711 (743)
Q Consensus 683 ~~i~~s~~g~~L~sg-----s~Dg~I~i~~~~i~ 711 (743)
..+.|+|+|++++.. +.++.|++|+....
T Consensus 365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred EEEEECCCCCEEEEEEECCCCCCCEEEEEECCCC
T ss_conf 9879999999999997248888982999999987
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=9.1e-14 Score=98.90 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=63.0
Q ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEE-CCCCCEEEEEECCCCCEEE-EEECCCCEEEE
Q ss_conf 997899821799489982699999877534222237784012479840-7999968999948999999-99689929999
Q 004594 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKAVLW 582 (743)
Q Consensus 505 ~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~i~fspdg~~La-sgs~Dg~V~IW 582 (743)
.++++++++.|++|.+|+...+ +.+.++. .+...+.+++|+|||++++ ++..++.|++|
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~ 67 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCC-------------------CEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 9969999869997999999999-------------------899999948999704599978989999997899939999
Q ss_pred ECCCCEEEEEECCCC------CCEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCC
Q ss_conf 779982889970479------8779999959999899996------------99919999887998
Q 004594 583 CTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPD 630 (743)
Q Consensus 583 d~~s~~~~~~l~~H~------~~V~~iafspd~~~LaSgs------------~DgtIriWDi~~~~ 630 (743)
|+.+++.+..+.... ..+..++|+|+++++++++ .+..+.+|+..++.
T Consensus 68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 133 (346)
T d1jmxb_ 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133 (346)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE
T ss_conf 675671312310365434547741799990588889997057752156514676248998525632
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=3.3e-13 Score=95.38 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=107.9
Q ss_pred CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC-----CCCEEEEEECCCCCEEEEEE------
Q ss_conf 789-982179948998269999987753422223778401247984079-----99968999948999999996------
Q 004594 507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-----TSKVESCHFSPDGKLLATGG------ 574 (743)
Q Consensus 507 ~~l-asGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-----~~~V~~i~fspdg~~Lasgs------ 574 (743)
+++ ++++.++.|.+|+...+. .+..+..+ ...+..++|+|++++++++.
T Consensus 46 ~~l~v~~~~~~~v~v~D~~t~~-------------------~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~ 106 (337)
T d1pbyb_ 46 RIAYATVNKSESLVKIDLVTGE-------------------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE 106 (337)
T ss_dssp SEEEEEETTTTEEEEEETTTCC-------------------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC
T ss_pred CEEEEEECCCCEEEEEECCCCC-------------------EEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 9999997899949999999992-------------------988872477731254025489868775799950477620
Q ss_pred ------CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----------------------
Q ss_conf ------8992999977998288997047987799999599998999969991999988----------------------
Q 004594 575 ------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---------------------- 626 (743)
Q Consensus 575 ------~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi---------------------- 626 (743)
.+..+.+||..+.+....+.. ...+.+++|+|++.++++++.+ +.+||+
T Consensus 107 ~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 183 (337)
T d1pbyb_ 107 LTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQP 183 (337)
T ss_dssp SSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred EEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECCC--CCEEEEECCCEEEEEECCCCCCCCEECC
T ss_conf 342034555212035667759884145-6872189986888889997177--5056630372788861477543311357
Q ss_pred -------------------------------------------CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf -------------------------------------------7998248998248998699999069990999981799
Q 004594 627 -------------------------------------------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (743)
Q Consensus 627 -------------------------------------------~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg 663 (743)
..+......+..+...+..+.+++++. +++.+ ++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 260 (337)
T d1pbyb_ 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YN 260 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ES
T ss_pred CCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCE-EEEEC--CC
T ss_conf 7631401466531246632444103660454036761799986888588898328875058887426613-99973--55
Q ss_pred CEEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 2999988999077998525---7124630799999996598499994631
Q 004594 664 EIRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 664 ~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg~I~i~~~~i 710 (743)
.|++||+.+++++..+... ..++|+++|.++++++.++.|.+|+...
T Consensus 261 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 261 VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred CEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
T ss_conf 28999898896999974899889999978999999994999299999998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.65 E-value=3.7e-12 Score=88.84 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=119.5
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf 24798407999968999948999999-99689929999779982889970479877999995999989999699-91999
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRV 623 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~La-sgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~D-gtIri 623 (743)
.....+..+ ..+.++.|+|++..++ ++..++.+.+|+..+......+.. ...+.+++++|++..+++++.+ +.+.+
T Consensus 107 ~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (301)
T d1l0qa2 107 TVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISV 184 (301)
T ss_dssp EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEECCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCCEEEEEECCCCCEEEECCCCCCCCC
T ss_conf 243202444-44237876058971554201111001100014630353156-7884288860465401310121111111
Q ss_pred EECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEE--CCCCEEEEECCCCEEEEEEECC---CCEEEECCCCEEE-EE
Q ss_conf 9887998248998248998699999069990999981--7992999988999077998525---7124630799999-99
Q 004594 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCFIL-NS 697 (743)
Q Consensus 624 WDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs--~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~-sg 697 (743)
|+.... .....+. ....+..+.|++++..+++++. .++.|++||+.+++++..+..+ ..++|+|+|.+++ ++
T Consensus 185 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~ 262 (301)
T d1l0qa2 185 IDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVAL 262 (301)
T ss_dssp EETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred CCCCCE-EEEECCC-CCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 111100-0111013-35775031101111011110021000023236569981999984899877999918989999998
Q ss_pred ECCCEEEEEECCC
Q ss_conf 6598499994631
Q 004594 698 IFNCYLLLHRIFL 710 (743)
Q Consensus 698 s~Dg~I~i~~~~i 710 (743)
+.++.|.+|+...
T Consensus 263 ~~~~~i~v~D~~t 275 (301)
T d1l0qa2 263 SFCNTVSVIDTAT 275 (301)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCEEEEEECCC
T ss_conf 9999699999999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.59 E-value=2.6e-12 Score=89.78 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=23.4
Q ss_pred EECCCCEEEEECCCCEEEEEEECC---CCEEEECCCCE--EEEEECCCEEEEEECC
Q ss_conf 817992999988999077998525---71246307999--9999659849999463
Q 004594 659 CDNNSEIRYWSINNGSCAGVFKVC---NLMPIILKGCF--ILNSIFNCYLLLHRIF 709 (743)
Q Consensus 659 gs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~--L~sgs~Dg~I~i~~~~ 709 (743)
...++.|.+||+.+++.+..+... ..+.|+++|++ +++++.|++|++|+..
T Consensus 294 ~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 294 HAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 25898699998999969898668998258999989998999996799929999999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2e-12 Score=90.57 Aligned_cols=214 Identities=11% Similarity=0.090 Sum_probs=105.7
Q ss_pred CEE-EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf 789-982179948998269999987753422223778401247984079999689999489999999968-992999977
Q 004594 507 RFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (743)
Q Consensus 507 ~~l-asGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~-Dg~V~IWd~ 584 (743)
++| +++..|+.|.+|...... ........ ..+...+..++|+|||++|++++. ++.|.+|+.
T Consensus 49 ~~L~v~~~~d~~i~~~~i~~~~---------------~~~~~~~~-~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 49 RYLYVGVRPEFRVLAYRIAPDD---------------GALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTTT---------------CCEEEEEE-EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEECCC---------------CCEEEEEE-CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 9999997789969999996898---------------70798530-1369985499995999887420568883022001
Q ss_pred CCCEEE--EEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEE-----EECCCCCEEEEEEECCCCEEE
Q ss_conf 998288--997047987799999599998999969-991999988799824899-----824899869999906999099
Q 004594 585 ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRT-----FTGHSTTVMSLDFHPSKEDLL 656 (743)
Q Consensus 585 ~s~~~~--~~l~~H~~~V~~iafspd~~~LaSgs~-DgtIriWDi~~~~~~l~~-----l~gh~~~V~sl~fsp~g~~ll 656 (743)
...... .....+...+.++.++|+++++++++. +..|.+|+.......... ..........+.|++++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEE
T ss_conf 11000000100377853149886301013102565542056897326874100100013340388752799960201478
Q ss_pred EEEECCCCEEEEECCCCE----EEEEEEC----------CCCEEEECCCCEEEEEE-CCCEEEEEECCC-----------
Q ss_conf 998179929999889990----7799852----------57124630799999996-598499994631-----------
Q 004594 657 CSCDNNSEIRYWSINNGS----CAGVFKV----------CNLMPIILKGCFILNSI-FNCYLLLHRIFL----------- 710 (743)
Q Consensus 657 aSgs~Dg~IrvWDl~tg~----~v~~~~~----------~~~i~~s~~g~~L~sgs-~Dg~I~i~~~~i----------- 710 (743)
.+....+...+|++.... ....... ...+.+++++.+++... .++.+.+|....
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 272 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 62046672178851035552021002234306877655312689951567205504568827878873999789999996
Q ss_pred ----CEEEEEECCCCCEEEEEE-CCCCEEEE
Q ss_conf ----138986218999899996-99909996
Q 004594 711 ----NLLSVSEWCNPDEISTSS-WKDSCCSH 736 (743)
Q Consensus 711 ----~~l~v~~~~~~~~iaSgs-~Dg~V~iW 736 (743)
....+.+.+++.++++++ .++.|.+|
T Consensus 273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~ 303 (333)
T d1ri6a_ 273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303 (333)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 7899762899907989999998899939999
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.1e-11 Score=84.17 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=121.5
Q ss_pred CCCCCEEEEEEC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC-CCCEE
Q ss_conf 679978998217-9948998269999987753422223778401247984079999689999489999999968-99299
Q 004594 503 TDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAV 580 (743)
Q Consensus 503 ~~~~~~lasGs~-D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~-Dg~V~ 580 (743)
.+.++++.+++. +..+.+|.... ...........+...+.++.++|+++++++++. +..|.
T Consensus 91 spDg~~l~v~~~~~~~v~~~~~~~-----------------~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~ 153 (333)
T d1ri6a_ 91 DHQGQFVFVGSYNAGNVSVTRLED-----------------GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC 153 (333)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEET-----------------TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred CCCCCEEEECCCCCCCEEEECCCC-----------------CCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEE
T ss_conf 599988742056888302200111-----------------000000100377853149886301013102565542056
Q ss_pred EEECCCCEEEE------EECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEE---EEE------CCCCCEE
Q ss_conf 99779982889------970479877999995999989999-6999199998879982489---982------4899869
Q 004594 581 LWCTESFTVKS------TLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR---TFT------GHSTTVM 644 (743)
Q Consensus 581 IWd~~s~~~~~------~l~~H~~~V~~iafspd~~~LaSg-s~DgtIriWDi~~~~~~l~---~l~------gh~~~V~ 644 (743)
+|+........ ...........++|++++..++.. ...+...+|++......+. ... .......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (333)
T d1ri6a_ 154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 233 (333)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCE
T ss_conf 89732687410010001334038875279996020147862046672178851035552021002234306877655312
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-------CCCEEEECCCCEEEEEE-CCCEEEEEEC
Q ss_conf 9999069990999981799299998899907799852-------57124630799999996-5984999946
Q 004594 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV-------CNLMPIILKGCFILNSI-FNCYLLLHRI 708 (743)
Q Consensus 645 sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~-------~~~i~~s~~g~~L~sgs-~Dg~I~i~~~ 708 (743)
.+.++++++.+++.+..++.+++|++........... ...++|+|+|++|++++ .++.|.+|+.
T Consensus 234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred EEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 689951567205504568827878873999789999996789976289990798999999889993999999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.56 E-value=7.4e-13 Score=93.22 Aligned_cols=147 Identities=10% Similarity=-0.062 Sum_probs=89.5
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCC--------------------------CE
Q ss_conf 6899994899999999689929999779982889970479877999995999--------------------------98
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--------------------------SR 611 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~--------------------------~~ 611 (743)
+..+.+++++.++++ +..+.+|++.+.+.+..+..+.. +..+.++|++ ..
T Consensus 147 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (346)
T d1jmxb_ 147 VYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 222 (346)
T ss_dssp CCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred EEEEEECCCCEEEEE---CCCCEEEECCCCCEEEEEECCCC-CCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEE
T ss_conf 399995278789984---79626998069978999964898-66237712552899986499816765123111267325
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CCEEEE
Q ss_conf 99996999199998879982489982489986999990699909999817992999988999077998525---712463
Q 004594 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC---NLMPII 688 (743)
Q Consensus 612 LaSgs~DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~---~~i~~s 688 (743)
++++..+..+.+||+.++......+..+...+.++.+++++..++ ++. ++.|++||+.+++.+..+... ..++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s 300 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE-EEC-CCEEEEEECCCCCEEEEECCCCCEEEEEEC
T ss_conf 754047834999977788368787631566068889717997899-942-983899989999399997499977899996
Q ss_pred CCCCEEEEEECCCEEEEEECCC
Q ss_conf 0799999996598499994631
Q 004594 689 LKGCFILNSIFNCYLLLHRIFL 710 (743)
Q Consensus 689 ~~g~~L~sgs~Dg~I~i~~~~i 710 (743)
++|.++++++.|+.|.+|+...
T Consensus 301 ~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 301 KKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp SSSSCEEEESBSSEEEEEETTT
T ss_pred CCCCEEEEEECCCCEEEEECCC
T ss_conf 8999999994899299999965
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.55 E-value=8.9e-12 Score=86.50 Aligned_cols=225 Identities=9% Similarity=-0.095 Sum_probs=121.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC------
Q ss_conf 89891589953323686446799789982179948998269999987753422223778401247984079999------
Q 004594 484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK------ 557 (743)
Q Consensus 484 ~i~fs~d~~~~l~~~~~~l~~~~~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~------ 557 (743)
.+.|+||+.......... .....++.++.|.+|+.... +.+..+..+...
T Consensus 70 ~~a~SpDG~~l~va~~~~-----~~~~~~~~~~~v~v~D~~t~-------------------~~~~~~~~~~~~~~~~~~ 125 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSF-----SRIAKGKRTDYVEVFDPVTF-------------------LPIADIELPDAPRFDVGP 125 (373)
T ss_pred CEEECCCCCEEEEEEECC-----CCCCCCCCCEEEEEEECCCC-------------------CEEEEEECCCCCEEEECC
T ss_conf 079868999899996057-----75321245318999977789-------------------388897268851368516
Q ss_pred -EEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEE
Q ss_conf -68999948999999996--8992999977998288997047987799999599998-9999699919999887998248
Q 004594 558 -VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (743)
Q Consensus 558 -V~~i~fspdg~~Lasgs--~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~-LaSgs~DgtIriWDi~~~~~~l 633 (743)
...+.|+++++.++... .+..+.+|+....+... +...+.++.|+|++.. +++.+.|+.+.+|+...... .
T Consensus 126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-~ 200 (373)
T d2madh_ 126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-G 200 (373)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEE----EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-E
T ss_conf 8970899858993799998698746776236872899----8245206999628991999994799399997477426-6
Q ss_pred EEEECC------CCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC----------------CCCEEEECCC
Q ss_conf 998248------998699999069990999981799299998899907799852----------------5712463079
Q 004594 634 RTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV----------------CNLMPIILKG 691 (743)
Q Consensus 634 ~~l~gh------~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~----------------~~~i~~s~~g 691 (743)
.....+ ......+.+.+++ .++..+.++.+++|+............ ...+.+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 278 (373)
T d2madh_ 201 AGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEEEECCCCCCCCEEEEEEECCCC--EEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 7886300366753043458878994--29992589659999768990789776305647578664136741335771499
Q ss_pred CEEE----------EEECCCEEEEEECCCC-----------EEEEEECCCCC--EEEEEECCCCEEEECCC
Q ss_conf 9999----------9965984999946311-----------38986218999--89999699909996799
Q 004594 692 CFIL----------NSIFNCYLLLHRIFLN-----------LLSVSEWCNPD--EISTSSWKDSCCSHREL 739 (743)
Q Consensus 692 ~~L~----------sgs~Dg~I~i~~~~i~-----------~l~v~~~~~~~--~iaSgs~Dg~V~iWd~~ 739 (743)
.+++ ....++.+.+|+.... ...+.+.+++. ++++++.|++|++||..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 75999548882478625898699998999969898668998258999989998999996799929999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=5.5e-11 Score=81.55 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=25.3
Q ss_pred EEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEECC
Q ss_conf 68999948999999996--899299997799828899704
Q 004594 558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEE 595 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs--~Dg~V~IWd~~s~~~~~~l~~ 595 (743)
...+.|+++++.++.+. .+..+.+|+..+++.+..+..
T Consensus 108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d2bbkh_ 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147 (355)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 7349993388715773279882045430578837667705
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.36 E-value=1.1e-10 Score=79.76 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=31.0
Q ss_pred EEEECCCCCEEEEE----------ECCCCEEEEECCCCEEEEEECCCCC-------CEEEEEECCCCCEEEEEE--CCCE
Q ss_conf 99994899999999----------6899299997799828899704798-------779999959999899996--9991
Q 004594 560 SCHFSPDGKLLATG----------GHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSS--ADRT 620 (743)
Q Consensus 560 ~i~fspdg~~Lasg----------s~Dg~V~IWd~~s~~~~~~l~~H~~-------~V~~iafspd~~~LaSgs--~Dgt 620 (743)
.++|+||+++|+++ +.|+.|++||+.+++.+..+..+.. ....++|+|++.+++.+. .+..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCE
T ss_conf 56994899999999677764201589998999999999798898058864031179873499933887157732798820
Q ss_pred EEEEECCCC
Q ss_conf 999988799
Q 004594 621 VRVWDTENP 629 (743)
Q Consensus 621 IriWDi~~~ 629 (743)
+++|+..++
T Consensus 131 ~~~~~~~~~ 139 (355)
T d2bbkh_ 131 VGVVDLEGK 139 (355)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
T ss_conf 454305788
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=6.1e-10 Score=75.06 Aligned_cols=70 Identities=7% Similarity=-0.109 Sum_probs=46.5
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 68999948999999996-89929999779982889970479877999995999989999699919999887998
Q 004594 558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs-~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~ 630 (743)
...++|+|||++++++. .++.+.+||+.+.+....+..+...... ......++..+.||.+.+|++....
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSC
T ss_pred CCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---CCCCCEEEEECCCCCEEEEEECCCC
T ss_conf 6405887899899999689985999989989386786046752374---6998239999489988999826896
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.26 E-value=2.1e-09 Score=71.75 Aligned_cols=128 Identities=11% Similarity=0.036 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCC----------EEEEEEECCCCCEE
Q ss_conf 99299997799828899704798779999959999899-99699919999887998----------24899824899869
Q 004594 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD----------YSLRTFTGHSTTVM 644 (743)
Q Consensus 576 Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~La-Sgs~DgtIriWDi~~~~----------~~l~~l~gh~~~V~ 644 (743)
++.+.|++....+.+..+..... ...+.++|++++++ ++..+++|.|||+.+.. .++.......-...
T Consensus 237 ~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgpl 315 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPL 315 (441)
T ss_dssp CCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEE
T ss_pred CCCEEEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 98289980368706899717988-66726899987899907759938999832244575256884247996014554766
Q ss_pred EEEEECCCCEEEEEEECCCCEEEEECCC----------CEEEEEE-----ECC----CCEEEECCCCEEEEE---ECCCE
Q ss_conf 9999069990999981799299998899----------9077998-----525----712463079999999---65984
Q 004594 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVF-----KVC----NLMPIILKGCFILNS---IFNCY 702 (743)
Q Consensus 645 sl~fsp~g~~llaSgs~Dg~IrvWDl~t----------g~~v~~~-----~~~----~~i~~s~~g~~L~sg---s~Dg~ 702 (743)
...|++++ +.+.+...|..|..|++.. ...+..+ .+| .+.+++|+|+||+++ +.|+.
T Consensus 316 h~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 316 HTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp EEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred CCEECCCC-EEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 52265785-59985244316897235422133226777656864532668987752454223898848996574442557
Q ss_pred EEE
Q ss_conf 999
Q 004594 703 LLL 705 (743)
Q Consensus 703 I~i 705 (743)
+.+
T Consensus 395 ~~~ 397 (441)
T d1qnia2 395 LPV 397 (441)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 678
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.23 E-value=1.5e-10 Score=78.92 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=17.4
Q ss_pred CCCCEEEEEEECCCCEEEEEEECCC--CEEEEECCCCEEEEEEE
Q ss_conf 8998699999069990999981799--29999889990779985
Q 004594 639 HSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK 680 (743)
Q Consensus 639 h~~~V~sl~fsp~g~~llaSgs~Dg--~IrvWDl~tg~~v~~~~ 680 (743)
|...+.++.|+|+|++++.+++... .+++|+..++++++.+.
T Consensus 414 ~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 88987999999899999998328999819999989998999980
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.13 E-value=5.2e-10 Score=75.48 Aligned_cols=140 Identities=6% Similarity=-0.025 Sum_probs=64.2
Q ss_pred CEEEEEECCCCCEEEEEE-CCC---CEEEE--ECCCCEEEEEEC------CCCCCE-----EEEEECCC--CCEEEEEEC
Q ss_conf 968999948999999996-899---29999--779982889970------479877-----99999599--998999969
Q 004594 557 KVESCHFSPDGKLLATGG-HDK---KAVLW--CTESFTVKSTLE------EHTQWI-----TDVRFSPS--LSRLATSSA 617 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs-~Dg---~V~IW--d~~s~~~~~~l~------~H~~~V-----~~iafspd--~~~LaSgs~ 617 (743)
.+..+.|.+++.+++... ... .+.+| |..++....... .....+ ....|.++ +.+++.+..
T Consensus 261 ~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~ 340 (470)
T d2bgra1 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (470)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECC
T ss_conf 67788876878334787304688159999996188894789998751466214335313577724542378847987436
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCC----C--EEEEECCCCEEEEEEEC----C----C
Q ss_conf 9919999887998248998248998699999069990999981799----2--99998899907799852----5----7
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----E--IRYWSINNGSCAGVFKV----C----N 683 (743)
Q Consensus 618 DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg----~--IrvWDl~tg~~v~~~~~----~----~ 683 (743)
||..++|.+.........+..+...|..+ +.+++..+++++..++ . |...++..+.....+.. + .
T Consensus 341 dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~ 419 (470)
T d2bgra1 341 EGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYY 419 (470)
T ss_dssp TSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBE
T ss_pred CCCCEEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEE
T ss_conf 75764599952687304511698048787-89779999999956899835179999988899860570354358889879
Q ss_pred CEEEECCCCEEEEE
Q ss_conf 12463079999999
Q 004594 684 LMPIILKGCFILNS 697 (743)
Q Consensus 684 ~i~~s~~g~~L~sg 697 (743)
.+.|+|+|+|++..
T Consensus 420 s~~fSpdgky~~~~ 433 (470)
T d2bgra1 420 SVSFSKEAKYYQLR 433 (470)
T ss_dssp EEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
T ss_conf 99999899999998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.05 E-value=9e-09 Score=67.75 Aligned_cols=91 Identities=7% Similarity=-0.079 Sum_probs=61.1
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCEEEEEECCCCC-------CEEEEEECCC
Q ss_conf 24798407999968999948999999996----------899299997799828899704798-------7799999599
Q 004594 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPS 608 (743)
Q Consensus 546 ~~~~~l~~H~~~V~~i~fspdg~~Lasgs----------~Dg~V~IWd~~s~~~~~~l~~H~~-------~V~~iafspd 608 (743)
+.+..+..+... .++|+||++.|++++ .|+.|.+||..+++++..+..+.. ....++|+||
T Consensus 57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred CEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCC
T ss_conf 377888578777--513989998899975567640103567869999899993830643785421024688640588789
Q ss_pred CCEEEEEE-CCCEEEEEECCCCCEEEEEEECC
Q ss_conf 99899996-99919999887998248998248
Q 004594 609 LSRLATSS-ADRTVRVWDTENPDYSLRTFTGH 639 (743)
Q Consensus 609 ~~~LaSgs-~DgtIriWDi~~~~~~l~~l~gh 639 (743)
+++++++. .++.|.+||+.+++. +..+..+
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~ 165 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKSA 165 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE-EEEEECS
T ss_pred CCEEEEEECCCCEEEEEECCCCCE-EEEEECC
T ss_conf 989999968998599998998938-6786046
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.93 E-value=4.6e-08 Score=63.37 Aligned_cols=152 Identities=7% Similarity=-0.044 Sum_probs=82.8
Q ss_pred CCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 999968999948999--999996899-----------------2999977998288997047987799999599998999
Q 004594 554 STSKVESCHFSPDGK--LLATGGHDK-----------------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (743)
Q Consensus 554 H~~~V~~i~fspdg~--~Lasgs~Dg-----------------~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaS 614 (743)
+...+..++|+|+++ +++..+.+. .+..+|..+.+....+... ..+..++|+|+++++++
T Consensus 114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~v 192 (441)
T d1qnia2 114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATS 192 (441)
T ss_dssp TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEE
T ss_pred CCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC-CCCCCEEECCCCCEEEE
T ss_conf 88786434870569989999566775443676630014555323886637556064787369-98654698799998999
Q ss_pred EECC-----------------------------------------CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 9699-----------------------------------------91999988799824899824899869999906999
Q 004594 615 SSAD-----------------------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (743)
Q Consensus 615 gs~D-----------------------------------------gtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~ 653 (743)
.+.+ +.+.+++..... .+..+... .....+.++|+|+
T Consensus 193 t~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~-v~~~IPvg-ksPhGv~vSPDGk 270 (441)
T d1qnia2 193 TCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE-FTRYIPVP-KNPHGLNTSPDGK 270 (441)
T ss_dssp EESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS-SEEEECCB-SSCCCEEECTTSC
T ss_pred EECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEECCCCCEEEECCCCCC-EEEEEECC-CCCCCCEECCCCC
T ss_conf 851787318985157121789996885110799669999996999828998036870-68997179-8866726899987
Q ss_pred EEEEEEECCCCEEEEECCCCE-----------EEEEEE-C---CCCEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 099998179929999889990-----------779985-2---571246307999999965984999946
Q 004594 654 DLLCSCDNNSEIRYWSINNGS-----------CAGVFK-V---CNLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 654 ~llaSgs~Dg~IrvWDl~tg~-----------~v~~~~-~---~~~i~~s~~g~~L~sgs~Dg~I~i~~~ 708 (743)
++++++..+++|.|||+.+.. ++.... . .....|.++|+.+.+...|..|..|+.
T Consensus 271 yl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 271 YFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred EEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECC
T ss_conf 8999077599389998322445752568842479960145547665226578559985244316897235
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.84 E-value=2.3e-06 Score=52.79 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=100.1
Q ss_pred CCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCC-EEE--EEE--CCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECC
Q ss_conf 999689999489999999968-992999977998-288--997--04798779999959999899996-99919999887
Q 004594 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESF-TVK--STL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (743)
Q Consensus 555 ~~~V~~i~fspdg~~Lasgs~-Dg~V~IWd~~s~-~~~--~~l--~~H~~~V~~iafspd~~~LaSgs-~DgtIriWDi~ 627 (743)
...+.++.|+|+++++++++. ...|.+|+.... ... ..+ .........++|+|+++++++.. .+++|.+|++.
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 98115978889999899820799879999706887166525111127887408999889986699951589989999955
Q ss_pred CCCEEE-EE---EE--------------CCCCCEEEEEEECCCCEEEEEEECCCC-----EEEEECCCCEEEEEEE----
Q ss_conf 998248-99---82--------------489986999990699909999817992-----9999889990779985----
Q 004594 628 NPDYSL-RT---FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFK---- 680 (743)
Q Consensus 628 ~~~~~l-~~---l~--------------gh~~~V~sl~fsp~g~~llaSgs~Dg~-----IrvWDl~tg~~v~~~~---- 680 (743)
...... .. .. .+......+.++|+++.++++...+.. |..|++.....+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEE
T ss_conf 98753778731240245565566654444357763169989999789971357875422799998568871446767667
Q ss_pred ------CCCCEEEEC-CCCEEEEE-ECCCEEEEEECCCCEE
Q ss_conf ------257124630-79999999-6598499994631138
Q 004594 681 ------VCNLMPIIL-KGCFILNS-IFNCYLLLHRIFLNLL 713 (743)
Q Consensus 681 ------~~~~i~~s~-~g~~L~sg-s~Dg~I~i~~~~i~~l 713 (743)
....+.+++ +|+|++++ ..++.|.+|+.....+
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 77679986478964899999999967999499999828867
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.81 E-value=3e-06 Score=52.04 Aligned_cols=181 Identities=10% Similarity=0.040 Sum_probs=99.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCE
Q ss_conf 79999689999489999999968992999977998288997047987799999599998999969-99199998879982
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY 631 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~-DgtIriWDi~~~~~ 631 (743)
.+...|.+..+.+++........+...++... ....-......+.+++|+|+++++++++. ...|.+|+......
T Consensus 104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~ 179 (365)
T d1jofa_ 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKN----VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEE----EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCEEEEEECCCCCCCCEEEEEEECCEECCC----CCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 79978998674578874206866403300476----46755688981159788899998998207998799997068871
Q ss_pred EE--EEE--ECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEE--EEEEC---------------------CCC
Q ss_conf 48--998--2489986999990699909999817992999988999077--99852---------------------571
Q 004594 632 SL--RTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKV---------------------CNL 684 (743)
Q Consensus 632 ~l--~~l--~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v--~~~~~---------------------~~~ 684 (743)
.. ... .........+.|+|+++.+++++..+++|.+|++...... ..... ...
T Consensus 180 ~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T d1jofa_ 180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred EEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66525111127887408999889986699951589989999955987537787312402455655666544443577631
Q ss_pred EEEECCCCEEEEEEC--C----CEEEEEECCC------------------CEEEEEECC-CCCEEEE-EECCCCEEEEC
Q ss_conf 246307999999965--9----8499994631------------------138986218-9998999-96999099967
Q 004594 685 MPIILKGCFILNSIF--N----CYLLLHRIFL------------------NLLSVSEWC-NPDEIST-SSWKDSCCSHR 737 (743)
Q Consensus 685 i~~s~~g~~L~sgs~--D----g~I~i~~~~i------------------~~l~v~~~~-~~~~iaS-gs~Dg~V~iWd 737 (743)
+.++|+|+++++... + ..+..++... ....+...+ ++.+++. ...++.|.+|+
T Consensus 260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf 6998999978997135787542279999856887144676766777679986478964899999999967999499999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.79 E-value=3.5e-06 Score=51.65 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=118.8
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 78998217994899826999998775342222377840124798407999968999948999999996899299997799
Q 004594 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (743)
Q Consensus 507 ~~lasGs~D~~V~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s 586 (743)
+++++...++.|..|+.. +. ...+......+.+++|+++++++++...++.+.+|+...
T Consensus 40 ~l~vt~~~~~~I~~i~p~-----------------g~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 40 TIFVTNHEVGEIVSITPD-----------------GN----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEETTTTEEEEECTT-----------------CC----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CEEEEECCCCEEEEEECC-----------------CC----EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECC
T ss_conf 899996889989999089-----------------98----899971799853689867788699832895378887101
Q ss_pred --CEEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC---------CCCCEEEEEEECCCCE
Q ss_conf --828899-7047987799999599998999969991999988799824899824---------8998699999069990
Q 004594 587 --FTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKED 654 (743)
Q Consensus 587 --~~~~~~-l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~g---------h~~~V~sl~fsp~g~~ 654 (743)
+..... ..........+++.+++.++++.+.++.+..++...+...+..... ....+..+.+. +..
T Consensus 99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~ 176 (302)
T d2p4oa1 99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNF 176 (302)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTE
T ss_pred CCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCC--CCC
T ss_conf 111012102357863221667715797875035655410242168730367518864014315763224320116--983
Q ss_pred EEEEEECCCCEEEEECCCCEEE---E---EEECCCCEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 9999817992999988999077---9---9852571246307999999965984999946311
Q 004594 655 LLCSCDNNSEIRYWSINNGSCA---G---VFKVCNLMPIILKGCFILNSIFNCYLLLHRIFLN 711 (743)
Q Consensus 655 llaSgs~Dg~IrvWDl~tg~~v---~---~~~~~~~i~~s~~g~~L~sgs~Dg~I~i~~~~i~ 711 (743)
++++....+.|+.+++...... . .......+++.++|+++++...++.|...+....
T Consensus 177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred EEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCCC
T ss_conf 044037887698634433332345310158998752378799999999748991899878997
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.65 E-value=8.9e-06 Score=49.10 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=46.7
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE
Q ss_conf 68999948999999996899299997799828899704798779999959999899996999199998879982489982
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~ 637 (743)
..++++.++++++++-.....+.+++..................+++++++++.+++...++.|..++...... .....
T Consensus 100 p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~ 178 (260)
T d1rwia_ 100 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPF 178 (260)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCC
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE-EEEEC
T ss_conf 00002455320575033555321123222201223203667752054548998864102564332223431001-22210
Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCEEEEECC
Q ss_conf 4899869999906999099998179929999889
Q 004594 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (743)
Q Consensus 638 gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~ 671 (743)
........+++++++. ++++....+.|..++..
T Consensus 179 ~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~ 211 (260)
T d1rwia_ 179 TDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAG 211 (260)
T ss_dssp SSCCSEEEEEECTTCC-EEEEETTTTEEEEECTT
T ss_pred CCCCCCCCCEEEEEEE-EEEEECCCCEEEEEECC
T ss_conf 1147876312310001-34321489989999699
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.60 E-value=1.3e-05 Score=48.13 Aligned_cols=143 Identities=8% Similarity=-0.054 Sum_probs=82.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECC----------CCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 999968999948999999996899299997799828899704----------7987799999599998999969991999
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----------HTQWITDVRFSPSLSRLATSSADRTVRV 623 (743)
Q Consensus 554 H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~----------H~~~V~~iafspd~~~LaSgs~DgtIri 623 (743)
.......+.+.++++++++.+.++.+..++............ ....+..+.+.. ..++++....+.|+.
T Consensus 111 ~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~ 189 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLR 189 (302)
T ss_dssp TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC-CCEEEECCCCCEEEE
T ss_conf 8632216677157978750356554102421687303675188640143157632243201169-830440378876986
Q ss_pred EECCCCCEE--EEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC------CCCEEE---ECCCC
Q ss_conf 988799824--8998248998699999069990999981799299998899907799852------571246---30799
Q 004594 624 WDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPI---ILKGC 692 (743)
Q Consensus 624 WDi~~~~~~--l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~------~~~i~~---s~~g~ 692 (743)
+++...... ...+. .......++|+++|. ++++...++.|..++.. ++....... .+.++| .++++
T Consensus 190 ~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 190 IPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT 266 (302)
T ss_dssp EEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CCCCCCCCCCCCCCCC-CCCCCCCEEECCCCC-EEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCC
T ss_conf 3443333234531015-899875237879999-99997489918998789-97899996378988824899708788789
Q ss_pred EEEEEECC
Q ss_conf 99999659
Q 004594 693 FILNSIFN 700 (743)
Q Consensus 693 ~L~sgs~D 700 (743)
.|++.+..
T Consensus 267 ~Lyvtt~~ 274 (302)
T d2p4oa1 267 AIYVVTNG 274 (302)
T ss_dssp EEEEEECT
T ss_pred EEEEECCC
T ss_conf 89999889
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=2e-05 Score=46.83 Aligned_cols=122 Identities=13% Similarity=0.273 Sum_probs=79.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf 9999689999489999999968992999977998288997--04798779999959999899996999199998879982
Q 004594 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (743)
Q Consensus 554 H~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l--~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~ 631 (743)
......++++.+++.++++....+.+.+++.. ++.+..+ ..+......+++.+++..+++....+.|++||... ..
T Consensus 112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~ 189 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY 189 (279)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE
T ss_pred CCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEECCC-CE
T ss_conf 64254200001478479996326325676268-75010022001025662432012001786201355100230479-44
Q ss_pred EEEEEE--CCCCCEEEEEEECCCCEEEEEEE-CCCCEEEEECCCCEEEEEEE
Q ss_conf 489982--48998699999069990999981-79929999889990779985
Q 004594 632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 680 (743)
Q Consensus 632 ~l~~l~--gh~~~V~sl~fsp~g~~llaSgs-~Dg~IrvWDl~tg~~v~~~~ 680 (743)
+..+. +.......+++++++. ++++-. .+..|.+|+. +++.+..+.
T Consensus 190 -~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~-~G~~~~~~~ 238 (279)
T d1q7fa_ 190 -LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALE 238 (279)
T ss_dssp -EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred -EEEECCCCCCCCCCCCCCCCCCE-EEEEECCCCCEEEEECC-CCCEEEEEE
T ss_conf -45301132114876232314786-99997899808999999-999999996
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.43 E-value=3.5e-05 Score=45.39 Aligned_cols=149 Identities=6% Similarity=-0.006 Sum_probs=97.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 96899994899999999689929999779982889970479877999995999989999699919999887998248998
Q 004594 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l 636 (743)
....++++++++++++....+.+++++..+...+.... ......++++.++++++++-..+..+..++...........
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~ 136 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 136 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred CCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEE
T ss_conf 84089993899889863100003554211200000010-00000000245532057503355532112322220122320
Q ss_pred ECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEE----ECCCCEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 2489986999990699909999817992999988999077998----52571246307999999965984999946
Q 004594 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KVCNLMPIILKGCFILNSIFNCYLLLHRI 708 (743)
Q Consensus 637 ~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~----~~~~~i~~s~~g~~L~sgs~Dg~I~i~~~ 708 (743)
. ......++++++++. ++++...++.|..++.......... .....+++.++|.++++....+.+.....
T Consensus 137 ~-~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 137 T-GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp C-SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred C-CCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEC
T ss_conf 3-667752054548998-8641025643322234310012221011478763123100013432148998999969
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3.8e-05 Score=45.19 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=85.5
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEC-CCC--EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEE--
Q ss_conf 984079999689999489999999968-992--9999779982889970479877999995999989-9996999199--
Q 004594 549 QLIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVR-- 622 (743)
Q Consensus 549 ~~l~~H~~~V~~i~fspdg~~Lasgs~-Dg~--V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~L-aSgs~DgtIr-- 622 (743)
..+..+.+.+.+..|+|++..++.... ++. +..+........ .............+.+++..+ ++...++...
T Consensus 76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 154 (269)
T d2hqsa1 76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 154 (269)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCCCCCCE-EEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEE
T ss_conf 677642024543024488986467640278641000022212200-0010144211454345544330000126874386
Q ss_pred EEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEC--CCCEEEEEEECC---CCEEEECCCCEEEEE
Q ss_conf 998879982489982489986999990699909999817992999988--999077998525---712463079999999
Q 004594 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKVC---NLMPIILKGCFILNS 697 (743)
Q Consensus 623 iWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl--~tg~~v~~~~~~---~~i~~s~~g~~L~sg 697 (743)
+.++.... ...............|+|++..+++.....+...+|.. ..+.. ...... ....|+|+|++|+-.
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~ 231 (269)
T d2hqsa1 155 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYS 231 (269)
T ss_dssp EEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEE
T ss_pred EEECCCCC--CEEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEEEE
T ss_conf 54213310--001000122223432234543057786058801256760356440-585068654455898999999999
Q ss_pred EC
Q ss_conf 65
Q 004594 698 IF 699 (743)
Q Consensus 698 s~ 699 (743)
+.
T Consensus 232 s~ 233 (269)
T d2hqsa1 232 SS 233 (269)
T ss_dssp EE
T ss_pred EC
T ss_conf 81
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.31 E-value=6.6e-05 Score=43.68 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=91.4
Q ss_pred CCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEEC------CCE
Q ss_conf 799996899994899999999689----9299997799828899704--7987799999599998999969------991
Q 004594 553 ASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSA------DRT 620 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~Lasgs~D----g~V~IWd~~s~~~~~~l~~--H~~~V~~iafspd~~~LaSgs~------Dgt 620 (743)
........++++++|+++++...+ +.+...+............ -...+..+++.+++++.++... .+.
T Consensus 79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~ 158 (319)
T d2dg1a1 79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 158 (319)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCE
T ss_conf 89987038999999999999568973110499873899636444267775558752267730653200135400257421
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCC-EEEEEEE-----------CCCCEEEE
Q ss_conf 99998879982489982489986999990699909999817992999988999-0779985-----------25712463
Q 004594 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-----------VCNLMPII 688 (743)
Q Consensus 621 IriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg-~~v~~~~-----------~~~~i~~s 688 (743)
+..++..... +..+...-.....++|+|+++.++++-+..+.|+.|++... ....... ....+++.
T Consensus 159 v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 159 VYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp EEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred EEEEECCCCE--EEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf 5788416633--57886123301000101222127874046891479997699836202463333125776410364173
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 0799999996598499994631138
Q 004594 689 LKGCFILNSIFNCYLLLHRIFLNLL 713 (743)
Q Consensus 689 ~~g~~L~sgs~Dg~I~i~~~~i~~l 713 (743)
.+|++.++....+.|.+.+.....+
T Consensus 237 ~~G~l~Va~~~~g~V~~~~p~G~~l 261 (319)
T d2dg1a1 237 SDDNLYVAMYGQGRVLVFNKRGYPI 261 (319)
T ss_dssp TTCCEEEEEETTTEEEEECTTSCEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCEE
T ss_conf 8999999984899899997999598
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.31 E-value=6.9e-05 Score=43.56 Aligned_cols=141 Identities=9% Similarity=0.039 Sum_probs=86.6
Q ss_pred CCCEEEEEECCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECC
Q ss_conf 9996899994899999999689------9299997799828899704798779999959999899-99699919999887
Q 004594 555 TSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTE 627 (743)
Q Consensus 555 ~~~V~~i~fspdg~~Lasgs~D------g~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~La-Sgs~DgtIriWDi~ 627 (743)
...+..+++.++|++.++.... +.+..++.+.. .+..+...-.....++|+|+++.|+ +-...+.|+.|++.
T Consensus 129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCC-EEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf 558752267730653200135400257421578841663-3578861233010001012221278740468914799976
Q ss_pred CCCEEEEE-------EECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC----------CCEEEECC
Q ss_conf 99824899-------82489986999990699909999817992999988999077998525----------71246307
Q 004594 628 NPDYSLRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----------NLMPIILK 690 (743)
Q Consensus 628 ~~~~~l~~-------l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----------~~i~~s~~ 690 (743)
........ ..........++++.+|. ++++....+.|.+||. .++.+..+... .++++.+.
T Consensus 208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~ 285 (319)
T d2dg1a1 208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 285 (319)
T ss_dssp TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CCCCEECCCCCEEEECCCCCCCEEEEEECCCCC-EEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf 998362024633331257764103641738999-9999848998999979-99598899688757786750466778079
Q ss_pred CCEEEEEE
Q ss_conf 99999996
Q 004594 691 GCFILNSI 698 (743)
Q Consensus 691 g~~L~sgs 698 (743)
...+++..
T Consensus 286 ~~~~~~t~ 293 (319)
T d2dg1a1 286 TNQLIICS 293 (319)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEC
T ss_conf 98899985
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.05 E-value=0.00024 Score=40.17 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=70.8
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC-C----CCEEEEEECCCCCEEEEEEC---------------
Q ss_conf 689999489999999968992999977998288997047-9----87799999599998999969---------------
Q 004594 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITDVRFSPSLSRLATSSA--------------- 617 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H-~----~~V~~iafspd~~~LaSgs~--------------- 617 (743)
-..+.|.++++.++++.....|..++.+..... .+... . ....++++.+++.+.++-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CEEEEEECCCCEEEEEECCCEEEEEECCCCEEE-EEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf 306999079998999977983999947774799-9733432454578727898889989991486675432011000268
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC----EEEEEEECCCCEEEEECCCCEEEE---EEE--------CC
Q ss_conf 991999988799824899824899869999906999----099998179929999889990779---985--------25
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSEIRYWSINNGSCAG---VFK--------VC 682 (743)
Q Consensus 618 DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~----~llaSgs~Dg~IrvWDl~tg~~v~---~~~--------~~ 682 (743)
+|.|..++.. +.. ... .........++|++++. .++++-+..+.|+.||+.....+. .+. ..
T Consensus 152 ~G~v~~~~~d-g~~-~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQM-IQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp CEEEEEECTT-SCE-EEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred CCEEEEEEEC-CCE-EEE-ECCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 8438999525-740-375-0785322136997887763037999860243117761167654301568997133566641
Q ss_pred CCEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 7124630799999996598499994
Q 004594 683 NLMPIILKGCFILNSIFNCYLLLHR 707 (743)
Q Consensus 683 ~~i~~s~~g~~L~sgs~Dg~I~i~~ 707 (743)
..+++..+|+..++....+.|.+++
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred EEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 0257834785799982799999996
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=0.00026 Score=39.99 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=70.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCC
Q ss_conf 999968999948999999996899---2999977998288997047987799999599998999969-991999988799
Q 004594 554 STSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP 629 (743)
Q Consensus 554 H~~~V~~i~fspdg~~Lasgs~Dg---~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~-DgtIriWDi~~~ 629 (743)
+...+...+|||||+.||....+. .+.+.+...... ..+..+...+.+..|+|++..++.... ++...++.....
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCC
T ss_conf 898426038878999899998152675134431136750-6776420245430244889864676402786410000222
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCC--EEEEECCCCEEEEEEECC---CCEEEECCCCEEEEEECCC
Q ss_conf 82489982489986999990699909999817992--999988999077998525---7124630799999996598
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKVC---NLMPIILKGCFILNSIFNC 701 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~--IrvWDl~tg~~v~~~~~~---~~i~~s~~g~~L~sgs~Dg 701 (743)
..................+.+++..++++...++. |.+.++..+......... ....+++++.+++..+.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 12200001014421145434554433000012687438654213310001000122223432234543057786058
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.97 E-value=0.00033 Score=39.32 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=112.2
Q ss_pred EEEEEECCC-CCEEEEE-ECCCCEEEEECCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 689999489-9999999-689929999779982889970-4798779999959999899996999199998879982489
Q 004594 558 VESCHFSPD-GKLLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (743)
Q Consensus 558 V~~i~fspd-g~~Lasg-s~Dg~V~IWd~~s~~~~~~l~-~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~ 634 (743)
-..+.+..+ +..+++. +.++.|.+++.. ++....+. ........+++.+++.++++....+.+.+++... .. +.
T Consensus 72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~-~~ 148 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LH 148 (279)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCC-CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCCC-CE-EE
T ss_conf 630001234455200004775310000025-6302403888642542000014784799963263256762687-50-10
Q ss_pred EE--ECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEEC------CCCEEEECCCCEEEEEEC-CCEEEE
Q ss_conf 98--248998699999069990999981799299998899907799852------571246307999999965-984999
Q 004594 635 TF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKV------CNLMPIILKGCFILNSIF-NCYLLL 705 (743)
Q Consensus 635 ~l--~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~------~~~i~~s~~g~~L~sgs~-Dg~I~i 705 (743)
.+ ..+......+++.+++. ++++....+.|++||.. ++.+..+.. ...+++.++|+.+++-.. +++|.+
T Consensus 149 ~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~ 226 (279)
T d1q7fa_ 149 KFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 226 (279)
T ss_dssp EEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred CCCCCCCCCCCCEEEECCCEE-EEEEECCCCCEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 022001025662432012001-78620135510023047-9444530113211487623231478699997899808999
Q ss_pred EECCCC-------------EEEEEECCCCCEEEEEECCCCEEEECCCCC
Q ss_conf 946311-------------389862189998999969990999679964
Q 004594 706 HRIFLN-------------LLSVSEWCNPDEISTSSWKDSCCSHRELYL 741 (743)
Q Consensus 706 ~~~~i~-------------~l~v~~~~~~~~iaSgs~Dg~V~iWd~~~i 741 (743)
.+...+ ...++... .+.++..+.+..|++|+-..+
T Consensus 227 f~~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 227 FTQDGQLISALESKVKHAQCFDVALMD-DGSVVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp ECTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEEETTTEEEEEECSCC
T ss_pred ECCCCCEEEEEECCCCCCCEEEEEEEC-CCCEEEEECCCEEEEEEEEEE
T ss_conf 999999999996888889883799908-991999918996999872203
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00058 Score=37.78 Aligned_cols=144 Identities=8% Similarity=0.063 Sum_probs=74.9
Q ss_pred CEEEEEECCCCCEEEEEEC-C---CCEEEEECCCCEEEEEECCCC-CCE----EEEEECCCCCEEE---EEECCC--EEE
Q ss_conf 9689999489999999968-9---929999779982889970479-877----9999959999899---996999--199
Q 004594 557 KVESCHFSPDGKLLATGGH-D---KKAVLWCTESFTVKSTLEEHT-QWI----TDVRFSPSLSRLA---TSSADR--TVR 622 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~-D---g~V~IWd~~s~~~~~~l~~H~-~~V----~~iafspd~~~La---Sgs~Dg--tIr 622 (743)
.+..+.|++++++++.... + ..|.++|..++++...+.++. .+| ....|.+++..++ ....+| .++
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly 335 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred EEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEE
T ss_conf 04566875799389999741003013799707999278778972785173567860574689805777765431667168
Q ss_pred EEECCC-----CCEEEEEEECCCCCEEEE-EEECCCCEEEEEEECCC--CEEEEE--CCCCEEEEEEE-------CCCCE
Q ss_conf 998879-----982489982489986999-99069990999981799--299998--89990779985-------25712
Q 004594 623 VWDTEN-----PDYSLRTFTGHSTTVMSL-DFHPSKEDLLCSCDNNS--EIRYWS--INNGSCAGVFK-------VCNLM 685 (743)
Q Consensus 623 iWDi~~-----~~~~l~~l~gh~~~V~sl-~fsp~g~~llaSgs~Dg--~IrvWD--l~tg~~v~~~~-------~~~~i 685 (743)
..++.. ....+..+....-.|..+ .|+.+++.+++++..++ .-++|. +..+....++. +...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~ 415 (465)
T d1xfda1 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA 415 (465)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred EEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEE
T ss_conf 99831566667886269822699219977898389999999996899982689999778998605531446788987999
Q ss_pred EEECCCCEEEEEECC
Q ss_conf 463079999999659
Q 004594 686 PIILKGCFILNSIFN 700 (743)
Q Consensus 686 ~~s~~g~~L~sgs~D 700 (743)
.|++++.|++.....
T Consensus 416 ~~S~~~~y~v~~~s~ 430 (465)
T d1xfda1 416 SFSHSMDFFLLKCEG 430 (465)
T ss_dssp EECTTSSEEEEECCS
T ss_pred EECCCCCEEEEEEEC
T ss_conf 999999999998006
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00023 Score=40.31 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=14.5
Q ss_pred EEEEEECCCCCEEEEE-ECC---CEEEEEECCCCCE
Q ss_conf 7999995999989999-699---9199998879982
Q 004594 600 ITDVRFSPSLSRLATS-SAD---RTVRVWDTENPDY 631 (743)
Q Consensus 600 V~~iafspd~~~LaSg-s~D---gtIriWDi~~~~~ 631 (743)
+..+.|.+++++++.. ..+ ..|.++|+.++..
T Consensus 257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~ 292 (465)
T d1xfda1 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (465)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred EEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCE
T ss_conf 456687579938999974100301379970799927
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.72 E-value=0.00086 Score=36.71 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred EEEEEECCCCCEEEEEEC---------------CCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCC----EE-EEEEC
Q ss_conf 689999489999999968---------------99299997799828899704798779999959999----89-99969
Q 004594 558 VESCHFSPDGKLLATGGH---------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS----RL-ATSSA 617 (743)
Q Consensus 558 V~~i~fspdg~~Lasgs~---------------Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~----~L-aSgs~ 617 (743)
...+++.++|++.++-.. ++.|..++.+ ++..... ..-.....++|+|++. .| ++-..
T Consensus 119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~ 196 (314)
T d1pjxa_ 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP 196 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEE-CCCCEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 7278988899899914866754320110002688438999525-7403750-7853221369978877630379998602
Q ss_pred CCEEEEEECCCCCEEE--EEEE---C-CCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC----CCEEE
Q ss_conf 9919999887998248--9982---4-89986999990699909999817992999988999077998525----71246
Q 004594 618 DRTVRVWDTENPDYSL--RTFT---G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPI 687 (743)
Q Consensus 618 DgtIriWDi~~~~~~l--~~l~---g-h~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~ 687 (743)
.+.|..||+....... ..+. + .....-.++++.+|. ++++....+.|.+||...+..+..+... ..++|
T Consensus 197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af 275 (314)
T d1pjxa_ 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF 275 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCC-EEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEE
T ss_conf 431177611676543015689971335666410257834785-7999827999999969999799999799998789999
Q ss_pred ECCCCEEEEE-ECCCEEEE
Q ss_conf 3079999999-65984999
Q 004594 688 ILKGCFILNS-IFNCYLLL 705 (743)
Q Consensus 688 s~~g~~L~sg-s~Dg~I~i 705 (743)
.++++.|++. +.++.|..
T Consensus 276 g~d~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 276 KPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp CTTSSEEEEEETTTTEEEE
T ss_pred ECCCCEEEEEECCCCCEEE
T ss_conf 2898999999878991999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.42 E-value=0.016 Score=28.77 Aligned_cols=152 Identities=13% Similarity=-0.030 Sum_probs=94.8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCC----CCCEEEEEECCCCCEEEEEEC----CCEEEEEEC
Q ss_conf 999689999489999999968992999977998288997047----987799999599998999969----991999988
Q 004594 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSA----DRTVRVWDT 626 (743)
Q Consensus 555 ~~~V~~i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H----~~~V~~iafspd~~~LaSgs~----DgtIriWDi 626 (743)
...+.++++.+++.++++ +.+ .+.++|..+++........ ...+.++.+.|++++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 998179899659988999-737-638950464513578664047876610135797999998874264313333057662
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCE-----EEEEEE---C----CCCEEEECCCCEE
Q ss_conf 799824899824899869999906999099998179929999889990-----779985---2----5712463079999
Q 004594 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFK---V----CNLMPIILKGCFI 694 (743)
Q Consensus 627 ~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~-----~v~~~~---~----~~~i~~s~~g~~L 694 (743)
..+.. ...+.. -.....++|++++..++++.+..+.|..+++.... ....+. . ...+++..+|++.
T Consensus 136 ~~g~~-~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AKGKV-TKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ETTEE-EEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred CCCCE-EEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
T ss_conf 29968-998650-6876402465877668985156632467645355553245357884167555666326786999989
Q ss_pred EEEECCCEEEEEECCC
Q ss_conf 9996598499994631
Q 004594 695 LNSIFNCYLLLHRIFL 710 (743)
Q Consensus 695 ~sgs~Dg~I~i~~~~i 710 (743)
++....+.|..++...
T Consensus 214 va~~~~g~V~~~dp~G 229 (295)
T d2ghsa1 214 NARWGEGAVDRYDTDG 229 (295)
T ss_dssp EEEETTTEEEEECTTC
T ss_pred EEEECCCCEEEECCCC
T ss_conf 5320788468856999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.89 E-value=0.03 Score=27.15 Aligned_cols=138 Identities=9% Similarity=0.062 Sum_probs=88.5
Q ss_pred CEEEEEECCCCCEEEEEECC----CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCC-
Q ss_conf 96899994899999999689----929999779982889970479877999995999989-999699919999887998-
Q 004594 557 KVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD- 630 (743)
Q Consensus 557 ~V~~i~fspdg~~Lasgs~D----g~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~L-aSgs~DgtIriWDi~~~~- 630 (743)
.++.+.+.|+|++.++...+ +.-.+|.+..++....+.. -.....++|++++..+ ++-+..+.|..+++....
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~ 182 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 182 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred CCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf 1013579799999887426431333305766229968998650-687640246587766898515663246764535555
Q ss_pred ------EEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECC----CCEEEE-CCCCEEEEE
Q ss_conf ------2489982489986999990699909999817992999988999077998525----712463-079999999
Q 004594 631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVC----NLMPII-LKGCFILNS 697 (743)
Q Consensus 631 ------~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~----~~i~~s-~~g~~L~sg 697 (743)
.....+.+..+....++++.+|. ++++.-..+.|.+||. .++.+..+... +.++|- ++.+.|++.
T Consensus 183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCCCEEEEECCCCCCCCCCCEEECCCCC-EEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 32453578841675556663267869999-8953207884688569-9928668638998527989828999999999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.84 E-value=0.031 Score=27.01 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=37.7
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCEEEEEECCC-------CCCEEEEEECCCCCEEEEEE
Q ss_conf 84079999689999489999999968-99-----2999977998288997047-------98779999959999899996
Q 004594 550 LIPASTSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSS 616 (743)
Q Consensus 550 ~l~~H~~~V~~i~fspdg~~Lasgs~-Dg-----~V~IWd~~s~~~~~~l~~H-------~~~V~~iafspd~~~LaSgs 616 (743)
.+..+.+.+...+|||||+.||.... ++ .|.+++...++... +..+ ........|+|+++.++...
T Consensus 35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 976699852677987899989999862898772289999825995288-6416887547644434310279887799997
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.25 E-value=0.05 Score=25.70 Aligned_cols=76 Identities=7% Similarity=0.050 Sum_probs=46.4
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC-
Q ss_conf 919999887998248998248998699999069990999981799299998899907799852571-----24630799-
Q 004594 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC- 692 (743)
Q Consensus 619 gtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~- 692 (743)
|.|.-||+.+++. +....... ...+=.....+. +++.++.|+.++.+|.++|+.+..+..... +.+..+|+
T Consensus 457 G~l~AiD~~tGk~-~W~~~~~~-p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 457 GRLLAWDPVAQKA-AWSVEHVS-PWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEECCCCCCE-EEEECCCC-CCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 6178757877866-70516889-887760798699-89997799919999999886857998989945167799989999
Q ss_pred EEEEE
Q ss_conf 99999
Q 004594 693 FILNS 697 (743)
Q Consensus 693 ~L~sg 697 (743)
||++.
T Consensus 534 Yv~v~ 538 (573)
T d1kb0a2 534 YVSVA 538 (573)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.061 Score=25.21 Aligned_cols=156 Identities=6% Similarity=-0.035 Sum_probs=90.5
Q ss_pred CCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEE--ECCC
Q ss_conf 7999968999948999999-9968992999977998288997047987799999599998999969-9919999--8879
Q 004594 553 ASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW--DTEN 628 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~La-sgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~-DgtIriW--Di~~ 628 (743)
.....+.++++..-+..|+ +-...+.|.+.+++.......+......+..++++|...+++-... .+..++| +++.
T Consensus 76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG 155 (263)
T d1npea_ 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (263)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred ECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCC
T ss_conf 01264207999636886888426789799880588167777125666872799925669279953489976899966789
Q ss_pred CCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-EEEECCCCEEEEEE-CCCEEEEE
Q ss_conf 98248998248998699999069990999981799299998899907799852571-24630799999996-59849999
Q 004594 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-MPIILKGCFILNSI-FNCYLLLH 706 (743)
Q Consensus 629 ~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-i~~s~~g~~L~sgs-~Dg~I~i~ 706 (743)
... .......-....++++++....++.+-...+.|...++........+.+... ..+..++.+|+... ..+.|...
T Consensus 156 ~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 156 TNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp CCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCC-EEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCEEEEEECCCCEEEEE
T ss_conf 972-3655303555530799504758999928999999999999976999889998689999999999999999979999
Q ss_pred ECC
Q ss_conf 463
Q 004594 707 RIF 709 (743)
Q Consensus 707 ~~~ 709 (743)
+..
T Consensus 235 ~~~ 237 (263)
T d1npea_ 235 DLA 237 (263)
T ss_dssp ETT
T ss_pred ECC
T ss_conf 898
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.86 E-value=0.065 Score=25.01 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=47.5
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC-
Q ss_conf 919999887998248998248998699999069990999981799299998899907799852571-----24630799-
Q 004594 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC- 692 (743)
Q Consensus 619 gtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~- 692 (743)
|.|.-||+.+++. +..+.- .....+-.+.-.+. +++.++.|+.++.+|.++|+.+..+..... +.+..+|+
T Consensus 438 G~l~A~D~~tGk~-~W~~~~-~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 438 GALLAWDPVKQKA-AWKVPY-PTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEEETTTTEE-EEEEEE-SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEEECCCCEE-EEECCC-CCCCCCCEEEECCC-EEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 6468870778837-310257-88887740598799-89997789819999999985827998999955167799989999
Q ss_pred EEEEEE
Q ss_conf 999996
Q 004594 693 FILNSI 698 (743)
Q Consensus 693 ~L~sgs 698 (743)
||++..
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999991
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.57 E-value=0.077 Score=24.57 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=64.6
Q ss_pred CCEEEEEECCCCCEEEEEECC------CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC----------
Q ss_conf 996899994899999999689------9299997799828899704798779999959999899996999----------
Q 004594 556 SKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---------- 619 (743)
Q Consensus 556 ~~V~~i~fspdg~~Lasgs~D------g~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~Dg---------- 619 (743)
.......|+|+++.|+..... ..+.+.+........ . +......+.+.+....++....+.
T Consensus 95 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (281)
T d1k32a2 95 MFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-L--NLGPATHILFADGRRVIGRNTFELPHWKGYRGGT 171 (281)
T ss_dssp ECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-C--CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEE-E--CCCCCCEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 443431027988779999713787652024651587760688-0--1786523464699849886204664044420588
Q ss_pred -EEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECC--CCEEEEECCCCEEEEEEEC--CCCEEEECCCCEE
Q ss_conf -1999988799824899824899869999906999099998179--9299998899907799852--5712463079999
Q 004594 620 -TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKV--CNLMPIILKGCFI 694 (743)
Q Consensus 620 -tIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~D--g~IrvWDl~tg~~v~~~~~--~~~i~~s~~g~~L 694 (743)
...++.... .. ...............+.++ .++.....+ ..|.++|+.+++....... .....++++|..|
T Consensus 172 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I 247 (281)
T d1k32a2 172 RGKIWIEVNS-GA-FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRI 247 (281)
T ss_dssp CCEEEEEEET-TE-EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCE
T ss_pred CCEEEEECCC-CC-EEECCCCCCCCCEEEEECC--CCCEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCEE
T ss_conf 6204441136-61-2240477666421331035--320001134552128996899965981058986443286798999
Q ss_pred EEEECCCEEEEEECC
Q ss_conf 999659849999463
Q 004594 695 LNSIFNCYLLLHRIF 709 (743)
Q Consensus 695 ~sgs~Dg~I~i~~~~ 709 (743)
+... ++.+.+.+..
T Consensus 248 ~f~~-~~~l~~~d~~ 261 (281)
T d1k32a2 248 LFSK-GGSIYIFNPD 261 (281)
T ss_dssp EEEE-TTEEEEECTT
T ss_pred EEEE-CCEEEEEECC
T ss_conf 9985-9999999899
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.37 E-value=0.13 Score=23.14 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=63.3
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 99948999999996899299997799828899704798779999959999899996999199998879982489982489
Q 004594 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (743)
Q Consensus 561 i~fspdg~~Lasgs~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi~~~~~~l~~l~gh~ 640 (743)
.+++|+..+++....+....+..... .. ..+-......+.+.+.... ......|.|..+|+.+++. +.....-.
T Consensus 391 ~a~dP~~~~~yv~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~~G~l~AiD~~TG~~-~W~~~~~~ 464 (571)
T d2ad6a1 391 DSYDPESRTLYAGLNHICMDWEPFML-PY---RAGQFFVGATLAMYPGPNG-PTKKEMGQIRAFDLTTGKA-KWTKWEKF 464 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCC-CC---CTTSCCCCEEEEEEECTTS-TTSCCCEEEEEECTTTCCE-EEEEEESS
T ss_pred CEECCCCCEEEEECCCCCCCCCCCCC-CC---CCCCCCCCCCEEECCCCCC-CCCCCCCCEEEECCCCCCE-EEECCCCC
T ss_conf 20778886289765534433430024-56---6775321563033146677-6667756178853677846-42767899
Q ss_pred CCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC-EEEEE
Q ss_conf 98699999069990999981799299998899907799852571-----24630799-99999
Q 004594 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC-FILNS 697 (743)
Q Consensus 641 ~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~-~L~sg 697 (743)
...... ....+. +++.++.|+.++.+|.++|+.+..+..... +.+..+|+ ||++.
T Consensus 465 ~~~~g~-l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 465 AAWGGT-LYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp CCCSBC-EEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCCE-EEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEE
T ss_conf 987560-596699-7999778996999999998687899899996515648988999999999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.71 E-value=0.21 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=7.6
Q ss_pred CEEEECCCCCC
Q ss_conf 09996799645
Q 004594 732 SCCSHRELYLY 742 (743)
Q Consensus 732 ~V~iWd~~~i~ 742 (743)
.|.+|+..|||
T Consensus 374 ~~e~y~Ppyl~ 384 (387)
T d1k3ia3 374 DAQIFTPNYLY 384 (387)
T ss_dssp EEEEEECGGGB
T ss_pred EEEEECCHHCC
T ss_conf 48998260405
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.53 E-value=0.033 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf 888999999996228969999999860799999
Q 004594 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (743)
Q Consensus 9 ~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (743)
++-||--|++||..+|+.++|.+|.+|+.++.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~ 39 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 39 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999999988829999999998778987
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.49 E-value=0.28 Score=21.06 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=49.0
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC
Q ss_conf 9919999887998248998248998699999069990999981799299998899907799852571-----24630799
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC 692 (743)
Q Consensus 618 DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~ 692 (743)
-|.|.-||+.+++. +.... +...+.+-.+...+. +++.++.|+.++.+|.++|+.+..+..... +.+..+|+
T Consensus 452 ~G~l~A~D~~TG~~-~W~~~-~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGk 528 (596)
T d1w6sa_ 452 LGQIKAYNAITGDY-KWEKM-ERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGT 528 (596)
T ss_dssp CEEEEEECTTTCCE-EEEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEEECCCCCE-ECCCC-CCCCCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf 55389980788856-23327-888874414686699-7999789995999999998483699899995407768998999
Q ss_pred -EEEEE
Q ss_conf -99999
Q 004594 693 -FILNS 697 (743)
Q Consensus 693 -~L~sg 697 (743)
||++.
T Consensus 529 QYvav~ 534 (596)
T d1w6sa_ 529 QYVAIY 534 (596)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.82 E-value=0.32 Score=20.71 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=64.5
Q ss_pred CEEEEEECCCCCEEEEEE-CCCEEEEEECCCC----------CEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEE
Q ss_conf 779999959999899996-9991999988799----------82489982489986999990699909999817992999
Q 004594 599 WITDVRFSPSLSRLATSS-ADRTVRVWDTENP----------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (743)
Q Consensus 599 ~V~~iafspd~~~LaSgs-~DgtIriWDi~~~----------~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~Irv 667 (743)
....+.++||++++++++ .+.+|.|+|++.- +.++.......-.....+|+..| +.+.|.--|..|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCC-EEEEEEECCCEEEE
T ss_conf 87733889999789993885895799982253566504688452179611357676620338984-29998612316999
Q ss_pred EECCCC----------EEEEEEECC-----C----CEEEECCCCEEEEEE
Q ss_conf 988999----------077998525-----7----124630799999996
Q 004594 668 WSINNG----------SCAGVFKVC-----N----LMPIILKGCFILNSI 698 (743)
Q Consensus 668 WDl~tg----------~~v~~~~~~-----~----~i~~s~~g~~L~sgs 698 (743)
|++... ..+..+..| . +-...++|+|+++..
T Consensus 355 w~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 355 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 73440556644666773113543345788774576786788887899803
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.44 E-value=0.34 Score=20.53 Aligned_cols=77 Identities=9% Similarity=0.086 Sum_probs=49.6
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCC-----EEEECCCC
Q ss_conf 9919999887998248998248998699999069990999981799299998899907799852571-----24630799
Q 004594 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCNL-----MPIILKGC 692 (743)
Q Consensus 618 DgtIriWDi~~~~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~~-----i~~s~~g~ 692 (743)
.|.|.-+|+.+++. +..+..+. ++.+-.....+. +++.++.|+.++.+|.++|+.+..++.... +.+..+|+
T Consensus 465 ~G~l~AiD~~TG~i-~W~~~~~~-p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 465 VGSLRAMDPVSGKV-VWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCCCE-EEECCCCC-CCCCCEEEECCC-EEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf 77599980789958-73267799-974501697698-6999679996999999998686798899996216779998999
Q ss_pred -EEEEE
Q ss_conf -99999
Q 004594 693 -FILNS 697 (743)
Q Consensus 693 -~L~sg 697 (743)
|+++.
T Consensus 542 qYv~i~ 547 (582)
T d1flga_ 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999999
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| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.37 Score=20.34 Aligned_cols=152 Identities=7% Similarity=-0.060 Sum_probs=94.3
Q ss_pred CCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC--CCEEEEEECCCC
Q ss_conf 799996899994899999999-68992999977998288997047987799999599998999969--991999988799
Q 004594 553 ASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENP 629 (743)
Q Consensus 553 ~H~~~V~~i~fspdg~~Lasg-s~Dg~V~IWd~~s~~~~~~l~~H~~~V~~iafspd~~~LaSgs~--DgtIriWDi~~~ 629 (743)
.....+.++++.+.+..|+.+ ...+.|.+.+++.......+.........++++|...+++-... .+.|.-.+++..
T Consensus 74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs 153 (266)
T d1ijqa1 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (266)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCC
T ss_conf 89998546898642652899954899998576489537888727998833699980039488712699730268636888
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC----CEEEECCCCEEEEEE-CCCEEE
Q ss_conf 824899824899869999906999099998179929999889990779985257----124630799999996-598499
Q 004594 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKVCN----LMPIILKGCFILNSI-FNCYLL 704 (743)
Q Consensus 630 ~~~l~~l~gh~~~V~sl~fsp~g~~llaSgs~Dg~IrvWDl~tg~~v~~~~~~~----~i~~s~~g~~L~sgs-~Dg~I~ 704 (743)
.. .......-....++++++.+..++.+-...+.|...++....+........ -..+...+.+|+... .++.|.
T Consensus 154 ~~-~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 154 DI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 232 (266)
T ss_dssp CE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEE
T ss_pred CE-ECCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCEEEEEECCCCEEE
T ss_conf 34-41200453201699861335699995289679999989999779999389855664799998999999989999699
Q ss_pred E
Q ss_conf 9
Q 004594 705 L 705 (743)
Q Consensus 705 i 705 (743)
.
T Consensus 233 ~ 233 (266)
T d1ijqa1 233 S 233 (266)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.69 E-value=0.44 Score=19.81 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=13.8
Q ss_pred CCCEEEEEEECCCCEEEEEEECCC--CEEEEECCCCEE
Q ss_conf 998699999069990999981799--299998899907
Q 004594 640 STTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 675 (743)
Q Consensus 640 ~~~V~sl~fsp~g~~llaSgs~Dg--~IrvWDl~tg~~ 675 (743)
...+..-.+...+..+++..-.++ .|+++++..++.
T Consensus 334 ~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL 371 (430)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCEEEEEEEEECCEEEEEEECCCEEEEEEEECCCCCE
T ss_conf 75255567897799999999918870899998999958
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| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=83.76 E-value=0.69 Score=18.61 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=76.1
Q ss_pred EEEEEE--CC-CCC-EEEEEECCCCEEEEECC---C----CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 689999--48-999-99999689929999779---9----8288997047987799999599998999969991999988
Q 004594 558 VESCHF--SP-DGK-LLATGGHDKKAVLWCTE---S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (743)
Q Consensus 558 V~~i~f--sp-dg~-~Lasgs~Dg~V~IWd~~---s----~~~~~~l~~H~~~V~~iafspd~~~LaSgs~DgtIriWDi 626 (743)
|+.+++ ++ ++. ++++...++.+..|.+. . .+.++.+.. ...+..|.+......|+.+-.+.-|..+++
T Consensus 130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred CEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCC-CCCCCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf 5699977427778079999758860899999747897255576303588-886216998178894999547552388880
Q ss_pred CCCC----EEEEEEEC--CCCCEEEEEEE--CCCC-EEEEEEECCCCEEEEECCC-CEEEEEEEC
Q ss_conf 7998----24899824--89986999990--6999-0999981799299998899-907799852
Q 004594 627 ENPD----YSLRTFTG--HSTTVMSLDFH--PSKE-DLLCSCDNNSEIRYWSINN-GSCAGVFKV 681 (743)
Q Consensus 627 ~~~~----~~l~~l~g--h~~~V~sl~fs--p~g~-~llaSgs~Dg~IrvWDl~t-g~~v~~~~~ 681 (743)
.... ..+....+ ...-+-.|+.- .++. ++++|.-.+.+..+||... .+.+..|..
T Consensus 209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
T ss_conf 45777662243113675445785453799847998599997379976999956788653325998
|